******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:87845991-87846491 1.0000 100 chr19:35643432-35643932 1.0000 100 chr21:28885034-28885534 1.0000 100 chr5:125550183-125550683 1.0000 100 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chr12:106357538-10635803 1.0000 100 chrX:106611717-106612217 1.0000 100 chr20:32357849-32358349 1.0000 100 chr19:38684246-38684746 1.0000 100 chr2:73214205-73214705 1.0000 100 chr6:44387687-44388187 1.0000 100 chrUn_KI270467v1:2915-34 1.0000 100 chr14:21511126-21511626 1.0000 100 chr2:176157954-176158454 1.0000 100 chr11:36509922-36510422 1.0000 100 chr11:65569915-65570415 1.0000 100 chr15:70096208-70096708 1.0000 100 chr19:1407199-1407699 1.0000 100 chr1:26900239-26900739 1.0000 100 chr19:4791364-4791864 1.0000 100 chr22:39502198-39502698 1.0000 100 chr15:57706416-57706916 1.0000 100 chr11:66466364-66466864 1.0000 100 chr11:46617807-46618307 1.0000 100 chr14:60485848-60486348 1.0000 100 chr10:132332188-13233268 1.0000 100 chr9:121201644-121202144 1.0000 100 chr9:128419102-128419602 1.0000 100 chr19:40420934-40421434 1.0000 100 chr19:3573547-3574047 1.0000 100 chr1:202143696-202144196 1.0000 100 chr9:128159736-128160236 1.0000 100 chr12:56299842-56300342 1.0000 100 chr7:100895868-100896368 1.0000 100 chr19:57350985-57351485 1.0000 100 chr1:52365052-52365552 1.0000 100 chrX:24054469-24054969 1.0000 100 chr14:23567501-23568001 1.0000 100 chr19:19385101-19385601 1.0000 100 chr19:44890583-44891083 1.0000 100 chr15:51971498-51971998 1.0000 100 chrX:154397513-154398013 1.0000 100 chr17:64507284-64507784 1.0000 100 chr1:61725042-61725542 1.0000 100 chr6:166342278-166342778 1.0000 100 chr1:150067015-150067515 1.0000 100 chr7:105013776-105014276 1.0000 100 chr3:5188626-5189126 1.0000 100 chr1:234676110-234676610 1.0000 100 chr3:9397295-9397795 1.0000 100 chr12:106955342-10695584 1.0000 100 chr20:63973775-63974275 1.0000 100 chr19:42220110-42220610 1.0000 100 chrX:111680967-111681467 1.0000 100 chr20:32109608-32110108 1.0000 100 chr12:57771812-57772312 1.0000 100 chr19:37594262-37594762 1.0000 100 chrX:77895288-77895788 1.0000 100 chr8:77000459-77000959 1.0000 100 chr19:47243984-47244484 1.0000 100 chr2:9630965-9631465 1.0000 100 chr10:73096934-73097434 1.0000 100 chr19:18157569-18158069 1.0000 100 chr22:24270791-24271291 1.0000 100 chr8:100951822-100952322 1.0000 100 chr2:55232385-55232885 1.0000 100 chr16:24539321-24539821 1.0000 100 chr3:186783078-186783578 1.0000 100 chr17:28719752-28720252 1.0000 100 chr4:75673215-75673715 1.0000 100 chr17:7484009-7484509 1.0000 100 chr7:100450327-100450827 1.0000 100 chr19:41859947-41860447 1.0000 100 chr19:13764075-13764575 1.0000 100 chr19:49496137-49496637 1.0000 100 chr2:55617407-55617907 1.0000 100 chr19:1905529-1906029 1.0000 100 chr1:23344121-23344621 1.0000 100 chr11:62599180-62599680 1.0000 100 chr19:49487312-49487812 1.0000 100 chr19:52189757-52190257 1.0000 100 chr1:22052442-22052942 1.0000 100 chr5:151771323-151771823 1.0000 100 chr14:91510071-91510571 1.0000 100 chr15:72473957-72474457 1.0000 100 chr20:44885348-44885848 1.0000 100 chr16:3003784-3004284 1.0000 100 chr19:39435697-39436197 1.0000 100 chr20:35742048-35742548 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.196 C 0.304 G 0.304 T 0.196 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.198 C 0.302 G 0.302 T 0.198 ******************************************************************************** ******************************************************************************** MOTIF GCAGGGGC MEME-1 width = 8 sites = 188 llr = 1634 E-value = 5.6e-098 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGGGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a::::: pos.-specific C 2a:::::9 probability G 6::aaaa: matrix T 1::::::1 bits 2.3 * 2.1 * 1.9 * 1.6 ** *** Relative 1.4 ******* Entropy 1.2 ******* (12.5 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGGGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------- chr20:44885348-44885848 - 4 4.54e-05 AGGCAGGGTT GCAGGGGC CGG chr15:72473957-72474457 + 83 4.54e-05 CGGGCTCCAC GCAGGGGC GGTGGGGCGG chr14:91510071-91510571 + 63 4.54e-05 GGGAGCAGCT GCAGGGGC GGCTCGTAGC chr11:62599180-62599680 - 38 4.54e-05 GCCCCATCTG GCAGGGGC TGACCTTGGC chr2:55617407-55617907 + 47 4.54e-05 GGCTGTCCTA GCAGGGGC TACGGCGGCC chr19:49496137-49496637 - 52 4.54e-05 TATCGATTAC GCAGGGGC TGGAGAGGAA chr8:100951822-100952322 + 71 4.54e-05 AGCCCCGGCA GCAGGGGC ACCACACGCA chr19:18157569-18158069 - 67 4.54e-05 CTGGCACACA GCAGGGGC AAGCCGGGGC chr19:37594262-37594762 + 4 4.54e-05 GCG GCAGGGGC TCCAGGGGCA chr19:42220110-42220610 + 49 4.54e-05 GTCAAGAGCG GCAGGGGC TGCAGGAGAT chr17:64507284-64507784 - 43 4.54e-05 CTACTATTCT GCAGGGGC ATAATAAATC chr19:19385101-19385601 - 54 4.54e-05 GCAGTGCTCT GCAGGGGC TCCCCACCCA chr19:57350985-57351485 + 52 4.54e-05 GCTCTGGGCT GCAGGGGC GAGACTTCTG chr11:46617807-46618307 - 56 4.54e-05 TGCCAAACAA GCAGGGGC CAACGGGGCC chr1:26900239-26900739 - 66 4.54e-05 ATCTCGCAAC GCAGGGGC TGGAACGTTG chr2:73214205-73214705 - 75 4.54e-05 CGGGCCGCGA GCAGGGGC AGGGCCGTAG chr19:38684246-38684746 + 62 4.54e-05 CCTGAGAGCA GCAGGGGC CCCTTTGTCC chrX:106611717-106612217 + 56 4.54e-05 TTGCCTGTCA GCAGGGGC AGAGTAGCGA chr20:50790685-50791185 + 71 4.54e-05 GCAGGGAGCA GCAGGGGC AGGGCCCCCG chr1:5992500-5993000 + 26 4.54e-05 CGCTAAAGTC GCAGGGGC AGGGCGGGAA chr17:57849899-57850399 - 26 4.54e-05 CCGCTCTCCC GCAGGGGC TGCGGTGAAA chr17:32142567-32143067 - 35 4.54e-05 GGTTGGGGCT GCAGGGGC GACAGGGGCG chr20:34302464-34302964 - 20 4.54e-05 CACCCCTCCA GCAGGGGC AGCCTTGCAG chr5:57173477-57173977 - 77 4.54e-05 AGGCCCCGGA GCAGGGGC GCGCGGGGGG chrX:47659095-47659595 + 26 4.54e-05 GGGCGTGCGA GCAGGGGC CGTCTGGCAA chr19:50384235-50384735 + 84 4.54e-05 GCAGGAGAGG GCAGGGGC CAGGGGTTT chr20:59032200-59032700 - 16 4.54e-05 CGGCAGGGCA GCAGGGGC CGTGCTCAGG chr20:49219114-49219614 + 15 4.54e-05 GGGGAGGGCG GCAGGGGC TCTGGAACGG chr10:99519952-99520452 + 10 4.54e-05 AGGGAGTTC GCAGGGGC TGCCCTTCTC chr3:128617779-128618279 + 90 4.54e-05 CCTAGGGGAA GCAGGGGC TGC chr19:34134487-34134987 - 18 4.54e-05 AGGGTCCGGG GCAGGGGC CGGGAAGACT chr3:48429817-48430317 - 42 4.54e-05 GGGGCGGTGA GCAGGGGC GGTGGGCAGG chr10:122504470-12250497 + 72 4.54e-05 GTCATGCCTG GCAGGGGC TGCTGGCCCA chr19:17303135-17303635 + 52 4.54e-05 GGCGGTCAGC GCAGGGGC ATCCCGCGGC chr15:90932317-90932817 + 52 4.54e-05 GACTGCGGCC GCAGGGGC AGGGACGGAA chr2:10689701-10690201 - 38 4.54e-05 ACGCCGCGGA GCAGGGGC TCGGAGGTCC chr8:9555604-9556104 - 15 4.54e-05 AGGCGGGGTA GCAGGGGC CAAAGAGAAG chr17:42554478-42554978 - 56 4.54e-05 CGCATCCGCA GCAGGGGC AGGAAGCGCT chr19:36127794-36128294 - 54 4.54e-05 CGCAACGCCG GCAGGGGC GAGACCTCAG chr17:76557493-76557993 + 57 4.54e-05 AGACTTGCGC GCAGGGGC GGTCTCGCGT chr1:26787809-26788309 + 11 4.54e-05 GTCGGGACGG GCAGGGGC TGAGGACCCC chr10:43574332-43574832 + 31 4.54e-05 CCCCACGCCT GCAGGGGC CAGATTCCGG chr12:4321022-4321522 + 1 4.54e-05 . GCAGGGGC AGCGCGGCGC chr10:17201384-17201884 + 38 4.54e-05 TCCAGCACCC GCAGGGGC TCCATCCCCG chr2:86623716-86624216 + 1 4.54e-05 . GCAGGGGC CGAGGGCGGG chr5:80487825-80488325 + 51 4.54e-05 TGCCCGGTTA GCAGGGGC GCCAGCCTGG chr16:4253860-4254360 + 53 4.54e-05 CTCCGCTTTC GCAGGGGC TGGGCGTTCC chr8:42271503-42272003 - 40 4.54e-05 GCCCGAGGTG GCAGGGGC AGAACCTACT chr10:25933957-25934457 - 92 4.54e-05 G GCAGGGGC AGCCGAGCAG chr5:179818831-179819331 + 33 4.54e-05 ATGGGTGGCA GCAGGGGC CGGGGATCCC chr1:225923958-225924458 + 36 4.54e-05 GGCGGACAGC GCAGGGGC GAACGGGCGG chr1:202926999-202927499 - 37 4.54e-05 TCGCGCGGCC GCAGGGGC CAGACCCGGA chr22:23913965-23914465 - 39 4.54e-05 CTCAGAGAAC GCAGGGGC GAAACGCCGG chr1:193121798-193122298 - 39 4.54e-05 TACGACAGCA GCAGGGGC AGTAGCCACC chr6:18263717-18264217 + 51 4.54e-05 CCCCTCCGCA GCAGGGGC CGAGGCGGAC chr1:16904777-16905277 + 15 4.54e-05 ATGAGGCAGC GCAGGGGC TGCTGCTTCG chr19:58554745-58555245 + 28 4.54e-05 CCACGGTCCA GCAGGGGC CACTCACCGG chr19:18282236-18282736 - 74 4.54e-05 AAGGGGCTGC GCAGGGGC CTGGACTCCC chr19:4455640-4456140 - 28 4.54e-05 AGGAGGGTGA GCAGGGGC CGTCAGGTGG chr2:85327808-85328308 - 25 4.54e-05 GACGCGCGCA GCAGGGGC GGGACTGGAG chr19:13774252-13774752 + 31 4.54e-05 GGACCATGGC GCAGGGGC AGCGCAAGTT chr22:41446617-41447117 + 68 4.54e-05 CCTCCGCCCT GCAGGGGC GGGGCCAGGG chr16:30534659-30535159 - 26 4.54e-05 GTACAATTGC GCAGGGGC AAAGGTCGAG chr22:36366355-36366855 + 60 4.54e-05 CTGCCGATGT GCAGGGGC AAGAGCACAA chr14:20684148-20684648 - 78 4.54e-05 CCCAGGGGCC GCAGGGGC AGCCCAGGCA chr22:31749814-31750314 - 21 4.54e-05 GGCTGCAGCT GCAGGGGC TGAGCTGGCT chr14:35825974-35826474 - 26 4.54e-05 TCTCAGACCT GCAGGGGC TGCACGCTTC chr5:103562302-103562802 - 25 4.54e-05 GGACGCATTT GCAGGGGC TCCCGCGACA chr17:75855458-75855958 + 31 4.54e-05 TCCGCTCCTG GCAGGGGC GCGATCTTGG chr12:22544249-22544749 - 24 4.54e-05 GGAGAGACAA GCAGGGGC GGCAGAGGCT chr2:165953696-165954196 + 4 4.54e-05 GGA GCAGGGGC GGCGGGGACC chr19:36418507-36419007 - 29 4.54e-05 TTCACGCAGA GCAGGGGC TGCACCAGCG chr14:22982542-22983042 + 35 4.54e-05 TGAGAGGCGG GCAGGGGC AGTTGGGGCA chr17:8121803-8122303 + 68 4.54e-05 ggtgggcagg gcaggggc ccggcagggg chr19:8240325-8240825 + 29 4.54e-05 GGGCCAGGCT GCAGGGGC GGGTGAGTGA chr6:133952055-133952555 - 41 4.54e-05 AAGTAGCCCT GCAGGGGC CGGGGGACCC chr13:20567103-20567603 - 3 4.54e-05 ACAGGACGCC GCAGGGGC AC chr10:100346888-10034738 + 8 4.54e-05 CCCAGAG GCAGGGGC AGGGGCAGAG chr2:237085601-237086101 + 51 4.54e-05 GGTCTGGTAC GCAGGGGC GCTCGGCGGC chr21:44454952-44455452 - 81 4.54e-05 GACCCAGGTC GCAGGGGC TGTGGGCGGG chr11:62791663-62792163 + 56 4.54e-05 GTCGTGCCTT GCAGGGGC CGGCAGGTGA chr1:26500429-26500929 - 52 4.54e-05 CCGAGCCTGA GCAGGGGC AGGCTCTAGC chr22:19984259-19984759 - 86 4.54e-05 ATGTGTA GCAGGGGC CGGGCTTTCC chr2:44167864-44168364 - 46 4.54e-05 ACCCGGAATT GCAGGGGC TTGGCTACTG chr19:36573132-36573632 + 70 4.54e-05 CCCGCTGGCC GCAGGGGC CGCACCACGC chr6:24774863-24775363 + 83 4.54e-05 AAGTGGGTAC GCAGGGGC GCAAGGCGCA chr19:38851514-38852014 - 7 4.54e-05 ACGCTGGAGT GCAGGGGC GCGATC chr17:43983587-43984087 + 78 4.54e-05 CCAGGCGCGC GCAGGGGC CGCGTGTCCG chr20:38730918-38731418 + 12 4.54e-05 CCTGAGGGTG GCAGGGGC GGGAGAACTA chr10:62268465-62268965 + 61 4.54e-05 AGTCCCAGTC GCAGGGGC CGGGGGCGCA chr3:4978431-4978931 - 25 4.54e-05 ACGGCCAAGC GCAGGGGC AGCTGAGGCT chr17:17913881-17914381 - 23 4.54e-05 GTCACACACA GCAGGGGC ATGTCTGCAG chr1:225428300-225428800 + 90 4.54e-05 TCGAAGGCGA GCAGGGGC GCT chr6:108562571-108563071 - 65 4.54e-05 CAGCAGCCCA GCAGGGGC AGAGGAGTTA chr8:43139953-43140453 + 52 4.54e-05 CTCCTGGCCT GCAGGGGC CTCTCTTCCG chr14:23640561-23641061 - 53 4.54e-05 AAGCTGCTCA GCAGGGGC TGCAGGGAGC chr1:200669453-200669953 + 17 4.54e-05 GGAAGGCCGC GCAGGGGC ACCAGTTCTG chr7:129948887-129949387 + 6 4.54e-05 CTTCA GCAGGGGC CACTGGTTCA chr1:153783457-153783957 - 92 4.54e-05 T GCAGGGGC CCGCCGGGCG chr19:39480359-39480859 + 44 4.54e-05 TGCGTCCTTT GCAGGGGC GGTGGCGCTC chr15:49169779-49170279 + 61 4.54e-05 CGTGCTCTGC GCAGGGGC TCCTGCGAGG chr2:168455858-168456358 - 38 4.54e-05 CGCCCTGGGC GCAGGGGC ACCGCTCCGG chr3:9397295-9397795 - 84 9.07e-05 GCGCCGGCG CCAGGGGC ACCCGGGACA chr1:52365052-52365552 + 65 9.07e-05 cggggttgcc ccaggggc catgggtgcc chr14:60485848-60486348 - 34 9.07e-05 AGGGCTGGTA CCAGGGGC GTGGGGGCGG chr18:21612102-21612602 - 25 9.07e-05 AGCGCCTACT CCAGGGGC TCCGGACGTC chr3:9749736-9750236 - 32 9.07e-05 TCTGGGTTCT CCAGGGGC AGACCACAGC chr15:70196503-70197003 + 30 9.07e-05 CGTTCACATT CCAGGGGC ACCGAGTCCA chr14:103520682-10352118 - 17 9.07e-05 TGGGATTCTA CCAGGGGC TGGTGACGCC chr12:51026276-51026776 - 51 9.07e-05 GCCGCGTGCC CCAGGGGC CGCCGCATCC chr1:147172138-147172638 + 66 9.07e-05 GCGCTCACTG CCAGGGGC GCCCCCACTC chr8:30727845-30728345 - 6 9.07e-05 CGCTCGGGAT CCAGGGGC CGGGG chr11:67277288-67277788 - 34 9.07e-05 GGGCCGACAG CCAGGGGC AAGGAGGCAC chr19:37466994-37467494 + 28 9.07e-05 GTCCGTTACA CCAGGGGC GACGCTTCCC chr6:6008485-6008985 + 78 9.07e-05 CTTCCGGTGT CCAGGGGC ACGGTGGCGG chr5:96934781-96935281 - 4 9.07e-05 GGCCGAACCG CCAGGGGC CCC chr1:155000848-155001348 - 23 9.07e-05 TGCGCCCCAG CCAGGGGC GGAAAGTGTG chr1:228781126-228781626 + 7 9.07e-05 ATCCCG CCAGGGGC AGGCTGTGTA chr21:46323600-46324100 + 31 9.07e-05 GACACAAAGC CCAGGGGC CGCCCGCGCG chr7:99465945-99466445 + 64 9.07e-05 CACGCCCCAT CCAGGGGC GTAGAGCAGA chr16:12803296-12803796 - 41 9.07e-05 CTTAGGGATT CCAGGGGC GCAGTTGAGA chr11:65083940-65084440 + 41 9.07e-05 GAGGCGTGGC CCAGGGGC GCGATGGCGT chr12:47812638-47813138 - 39 9.07e-05 TGAGAGTGAG CCAGGGGC ATCGTGTGAT chr19:42280198-42280698 - 44 9.07e-05 AGGTCTGCAC CCAGGGGC GCGCGGGAAC chr17:1463127-1463627 - 53 9.07e-05 GACAGAGCTA CCAGGGGC ACACCGGAAC chr1:225777840-225778340 - 37 9.07e-05 TGGGGAAGCT CCAGGGGC CGAGTGGATG chr16:67226742-67227242 + 35 9.07e-05 CCTCTCACCT CCAGGGGC AGCGACTCCG chr12:50102866-50103366 - 48 9.07e-05 AGGTACTGCC CCAGGGGC TTCATCAGGT chr6:75748731-75749231 + 75 9.07e-05 CCCGGCTTGT CCAGGGGC AGCCCCTCTC chr15:75368255-75368755 + 15 9.07e-05 CTGCGGGGGA CCAGGGGC CACACCTGCC chr20:38472556-38473056 - 78 9.07e-05 CTTCCGACTG CCAGGGGC GGCGGCGTCA chr3:169966446-169966946 + 66 9.07e-05 CCTCCCCATT CCAGGGGC GCCAGCCGGC chr19:11374500-11375000 + 9 9.07e-05 GGTGCTAA CCAGGGGC GGTGCGGCCT chr2:55268948-55269448 - 33 9.07e-05 TGCTCAGAAT CCAGGGGC CCGGGGCTGT chr6:73310124-73310624 + 81 9.07e-05 CCAGCGCTTT CCAGGGGC TCCAGCCTAC chr1:12019270-12019770 - 20 9.07e-05 CTGAGCCGTT CCAGGGGC CTCGGCCGGC chr17:45431497-45431997 + 19 9.07e-05 GGCGGGGTTT CCAGGGGC GAGGCCGGAG chr1:179882481-179882981 - 34 9.07e-05 TCTTTGGCCA CCAGGGGC TCGAAGTCGC chr11:28110016-28110516 + 83 9.07e-05 CAAGTTTCCC CCAGGGGC AGGACCTAGA chr4:141133263-141133763 - 74 9.07e-05 CAAGAGAATC CCAGGGGC TTTGACATCA chr4:30719306-30719806 - 50 9.07e-05 AGCCTCAGCT CCAGGGGC CGCTCAAAGT chr1:22052442-22052942 - 37 1.20e-04 CGGCTGCCGG ACAGGGGC ACGCACCTGA chr19:52189757-52190257 - 21 1.20e-04 GAGCCAGTTT ACAGGGGC TGCTCCACGG chr19:49487312-49487812 - 52 1.20e-04 ATCCCTTGAA ACAGGGGC GGCAGAAGTG chr3:5188626-5189126 + 38 1.20e-04 CCTCTCCTTC ACAGGGGC TGCTTCTTAG chr1:150067015-150067515 + 37 1.20e-04 CAGCCTCAAC ACAGGGGC ACTGTTCCCG chr19:18437025-18437525 - 68 1.20e-04 CGGGAGTCTT ACAGGGGC GGAGCTTAAG chr16:1826943-1827443 + 74 1.20e-04 CCACGTGACT ACAGGGGC ACTTGATGGG chr1:1724164-1724664 + 26 1.20e-04 ACTCAAGACG ACAGGGGC TCGCTCTGTG chr16:30787104-30787604 - 30 1.20e-04 GGAGACGGGG ACAGGGGC GTCGTCCCAG chr10:102152082-10215258 - 66 1.20e-04 CAGGAACCCA ACAGGGGC AGTGGGCGGG chr11:65711838-65712338 + 79 1.20e-04 CCCCCGAGTC ACAGGGGC AGTCTTGCCC chr11:64335069-64335569 - 76 1.20e-04 AAGTGTGGTG ACAGGGGC TCACCTCCTG chrX:47362024-47362524 + 20 1.20e-04 GCACATAGCA ACAGGGGC TTCTCCCTAG chr10:102917690-10291819 + 57 1.20e-04 GGGATCTACT ACAGGGGC CCCTGGGGAG chr8:37514258-37514758 - 45 1.20e-04 AACATTGCTC ACAGGGGC AGACGAGTTG chr6:166342278-166342778 - 45 1.50e-04 CTGGTGGGCG TCAGGGGC AGGCAACAGA chr19:4791364-4791864 + 24 1.50e-04 CTCACAGCTC TCAGGGGC TGTCCTGTGG chr5:150436054-150436554 + 54 1.50e-04 GGGGCTCCCT TCAGGGGC AGGACTCTGC chr19:38899723-38900223 - 89 1.50e-04 CGCC TCAGGGGC CCCCCGCAGT chr8:125091536-125092036 - 22 1.50e-04 GCCTGGGGAG TCAGGGGC GGAAGTCGGG chr8:28445272-28445772 + 46 1.50e-04 TCCTTGCCTA TCAGGGGC TGGAAACCAG chr15:65869155-65869655 + 37 1.50e-04 CTTGTTGGGC TCAGGGGC GGGGCGCCGC chr16:67846504-67847004 + 24 1.50e-04 ACCACAATTC TCAGGGGC TTGCCCCGGC chr1:218304614-218305114 - 91 1.50e-04 TG TCAGGGGC TTTTAAAAAA chr5:111757912-111758412 - 67 1.50e-04 GGCCCGGCCT TCAGGGGC GCTCCCCGCC chr10:132335549-13233604 + 46 1.50e-04 cccagtcagc tcaggggc tcttcaagta chr4:75673215-75673715 - 34 1.80e-04 GGCCCTTTCG GCAGGGGT AAAACAATAA chr18:62325672-62326172 - 63 1.80e-04 AGGCGAGCTG GCAGGGGT GTCCCCGAAG chr19:12610743-12611243 - 56 1.80e-04 CGCATCCGAT GCAGGGGT ACAGCAACCT chr19:39031582-39032082 + 89 1.80e-04 CACCTTGGCC GCAGGGGT TGCG chrX:48003748-48004248 + 74 1.80e-04 CTAAAGGGCT GCAGGGGT CGGTTCTGCG chr19:38975033-38975533 + 36 1.80e-04 GCAGCGTTTG GCAGGGGT TTTGGATGGT chr5:181222311-181222811 - 56 1.80e-04 GCCGGCCGCG GCAGGGGT CCCCGGGCCT chr22:39399547-39400047 + 39 1.80e-04 GGGCGCTCCC GCAGGGGT TCCTCCAAGA chr19:2096193-2096693 + 27 1.80e-04 GAAGCGGCGT GCAGGGGT CTCCCAGACT chr19:36528253-36528753 + 21 1.80e-04 CCTGGCCGGG GCAGGGGT GTAAGGCCTT chr1:144551635-144552135 + 16 1.80e-04 tggggaaatc gcaggggt cagcacatcc chr9:129334440-129334940 + 82 1.80e-04 GAGAGACAGA GCAGGGGT GCAGTTGGCT chr19:38336598-38337098 + 69 1.80e-04 AGGCGGAGGA GCAGGGGT GTGGCCAGAA chr20:35742048-35742548 + 51 2.25e-04 AGAGCCCTCA GCACGGGC TCTCGCGAGA chr16:24539321-24539821 - 16 2.25e-04 AGCAGGGATT GCACGGGC GGCGCGCGCG chrX:24054469-24054969 + 9 2.25e-04 CCCGCCTC GCACGGGC CGGCGGGGCG chr19:47608910-47609410 - 5 2.25e-04 AGACGGCCCC GCACGGGC TGCA chr19:39445297-39445797 - 10 2.25e-04 TCCGGGGCTG GCACGGGC GACGCACTT chr18:76451352-76451852 - 83 2.25e-04 CTCAGCACAC GCACGGGC TTCTGCGCCG chr19:52189960-52190460 + 64 2.25e-04 GTACCTGGGG GCACGGGC GGCCCTCGCG chr19:37077905-37078405 + 26 2.55e-04 CTCTCTCCTG CCAGGGGT AGACCCTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:44885348-44885848 4.5e-05 3_[-1]_89 chr15:72473957-72474457 4.5e-05 82_[+1]_10 chr14:91510071-91510571 4.5e-05 62_[+1]_30 chr11:62599180-62599680 4.5e-05 37_[-1]_55 chr2:55617407-55617907 4.5e-05 46_[+1]_46 chr19:49496137-49496637 4.5e-05 51_[-1]_41 chr8:100951822-100952322 4.5e-05 70_[+1]_22 chr19:18157569-18158069 4.5e-05 66_[-1]_26 chr19:37594262-37594762 4.5e-05 3_[+1]_89 chr19:42220110-42220610 4.5e-05 48_[+1]_44 chr17:64507284-64507784 4.5e-05 42_[-1]_50 chr19:19385101-19385601 4.5e-05 53_[-1]_39 chr19:57350985-57351485 4.5e-05 51_[+1]_41 chr11:46617807-46618307 4.5e-05 55_[-1]_37 chr1:26900239-26900739 4.5e-05 65_[-1]_27 chr2:73214205-73214705 4.5e-05 74_[-1]_18 chr19:38684246-38684746 4.5e-05 61_[+1]_31 chrX:106611717-106612217 4.5e-05 55_[+1]_37 chr20:50790685-50791185 4.5e-05 70_[+1]_22 chr1:5992500-5993000 4.5e-05 25_[+1]_67 chr17:57849899-57850399 4.5e-05 25_[-1]_67 chr17:32142567-32143067 4.5e-05 34_[-1]_58 chr20:34302464-34302964 4.5e-05 19_[-1]_73 chr5:57173477-57173977 4.5e-05 76_[-1]_16 chrX:47659095-47659595 4.5e-05 25_[+1]_67 chr19:50384235-50384735 4.5e-05 83_[+1]_9 chr20:59032200-59032700 4.5e-05 15_[-1]_77 chr20:49219114-49219614 4.5e-05 14_[+1]_78 chr10:99519952-99520452 4.5e-05 9_[+1]_83 chr3:128617779-128618279 4.5e-05 89_[+1]_3 chr19:34134487-34134987 4.5e-05 17_[-1]_75 chr3:48429817-48430317 4.5e-05 41_[-1]_51 chr10:122504470-12250497 4.5e-05 71_[+1]_21 chr19:17303135-17303635 4.5e-05 51_[+1]_41 chr15:90932317-90932817 4.5e-05 51_[+1]_41 chr2:10689701-10690201 4.5e-05 37_[-1]_55 chr8:9555604-9556104 4.5e-05 14_[-1]_78 chr17:42554478-42554978 4.5e-05 55_[-1]_37 chr19:36127794-36128294 4.5e-05 53_[-1]_39 chr17:76557493-76557993 4.5e-05 56_[+1]_36 chr1:26787809-26788309 4.5e-05 10_[+1]_82 chr10:43574332-43574832 4.5e-05 30_[+1]_62 chr12:4321022-4321522 4.5e-05 [+1]_92 chr10:17201384-17201884 4.5e-05 37_[+1]_55 chr2:86623716-86624216 4.5e-05 [+1]_92 chr5:80487825-80488325 4.5e-05 50_[+1]_42 chr16:4253860-4254360 4.5e-05 52_[+1]_40 chr8:42271503-42272003 4.5e-05 39_[-1]_53 chr10:25933957-25934457 4.5e-05 91_[-1]_1 chr5:179818831-179819331 4.5e-05 32_[+1]_60 chr1:225923958-225924458 4.5e-05 35_[+1]_57 chr1:202926999-202927499 4.5e-05 36_[-1]_56 chr22:23913965-23914465 4.5e-05 38_[-1]_54 chr1:193121798-193122298 4.5e-05 38_[-1]_54 chr6:18263717-18264217 4.5e-05 50_[+1]_42 chr1:16904777-16905277 4.5e-05 14_[+1]_78 chr19:58554745-58555245 4.5e-05 27_[+1]_65 chr19:18282236-18282736 4.5e-05 73_[-1]_19 chr19:4455640-4456140 4.5e-05 27_[-1]_65 chr2:85327808-85328308 4.5e-05 24_[-1]_68 chr19:13774252-13774752 4.5e-05 30_[+1]_62 chr22:41446617-41447117 4.5e-05 67_[+1]_25 chr16:30534659-30535159 4.5e-05 25_[-1]_67 chr22:36366355-36366855 4.5e-05 59_[+1]_33 chr14:20684148-20684648 4.5e-05 77_[-1]_15 chr22:31749814-31750314 4.5e-05 20_[-1]_72 chr14:35825974-35826474 4.5e-05 25_[-1]_67 chr5:103562302-103562802 4.5e-05 24_[-1]_68 chr17:75855458-75855958 4.5e-05 30_[+1]_62 chr12:22544249-22544749 4.5e-05 23_[-1]_69 chr2:165953696-165954196 4.5e-05 3_[+1]_89 chr19:36418507-36419007 4.5e-05 28_[-1]_64 chr14:22982542-22983042 4.5e-05 34_[+1]_58 chr17:8121803-8122303 4.5e-05 67_[+1]_25 chr19:8240325-8240825 4.5e-05 28_[+1]_64 chr6:133952055-133952555 4.5e-05 40_[-1]_52 chr13:20567103-20567603 4.5e-05 2_[-1]_90 chr10:100346888-10034738 4.5e-05 7_[+1]_85 chr2:237085601-237086101 4.5e-05 50_[+1]_42 chr21:44454952-44455452 4.5e-05 80_[-1]_12 chr11:62791663-62792163 4.5e-05 55_[+1]_37 chr1:26500429-26500929 4.5e-05 51_[-1]_41 chr22:19984259-19984759 4.5e-05 85_[-1]_7 chr2:44167864-44168364 4.5e-05 45_[-1]_47 chr19:36573132-36573632 4.5e-05 69_[+1]_23 chr6:24774863-24775363 4.5e-05 82_[+1]_10 chr19:38851514-38852014 4.5e-05 6_[-1]_86 chr17:43983587-43984087 4.5e-05 77_[+1]_15 chr20:38730918-38731418 4.5e-05 11_[+1]_81 chr10:62268465-62268965 4.5e-05 60_[+1]_32 chr3:4978431-4978931 4.5e-05 24_[-1]_68 chr17:17913881-17914381 4.5e-05 22_[-1]_70 chr1:225428300-225428800 4.5e-05 89_[+1]_3 chr6:108562571-108563071 4.5e-05 64_[-1]_28 chr8:43139953-43140453 4.5e-05 51_[+1]_41 chr14:23640561-23641061 4.5e-05 52_[-1]_40 chr1:200669453-200669953 4.5e-05 16_[+1]_76 chr7:129948887-129949387 4.5e-05 5_[+1]_87 chr1:153783457-153783957 4.5e-05 91_[-1]_1 chr19:39480359-39480859 4.5e-05 43_[+1]_49 chr15:49169779-49170279 4.5e-05 60_[+1]_32 chr2:168455858-168456358 4.5e-05 37_[-1]_55 chr3:9397295-9397795 9.1e-05 83_[-1]_9 chr1:52365052-52365552 9.1e-05 64_[+1]_28 chr14:60485848-60486348 9.1e-05 33_[-1]_59 chr18:21612102-21612602 9.1e-05 24_[-1]_68 chr3:9749736-9750236 9.1e-05 31_[-1]_61 chr15:70196503-70197003 9.1e-05 29_[+1]_63 chr14:103520682-10352118 9.1e-05 16_[-1]_76 chr12:51026276-51026776 9.1e-05 50_[-1]_42 chr1:147172138-147172638 9.1e-05 65_[+1]_27 chr8:30727845-30728345 9.1e-05 5_[-1]_87 chr11:67277288-67277788 9.1e-05 33_[-1]_59 chr19:37466994-37467494 9.1e-05 27_[+1]_65 chr6:6008485-6008985 9.1e-05 77_[+1]_15 chr5:96934781-96935281 9.1e-05 3_[-1]_89 chr1:155000848-155001348 9.1e-05 22_[-1]_70 chr1:228781126-228781626 9.1e-05 6_[+1]_86 chr21:46323600-46324100 9.1e-05 30_[+1]_62 chr7:99465945-99466445 9.1e-05 63_[+1]_29 chr16:12803296-12803796 9.1e-05 40_[-1]_52 chr11:65083940-65084440 9.1e-05 40_[+1]_52 chr12:47812638-47813138 9.1e-05 38_[-1]_54 chr19:42280198-42280698 9.1e-05 43_[-1]_49 chr17:1463127-1463627 9.1e-05 52_[-1]_40 chr1:225777840-225778340 9.1e-05 36_[-1]_56 chr16:67226742-67227242 9.1e-05 34_[+1]_58 chr12:50102866-50103366 9.1e-05 47_[-1]_45 chr6:75748731-75749231 9.1e-05 74_[+1]_18 chr15:75368255-75368755 9.1e-05 14_[+1]_78 chr20:38472556-38473056 9.1e-05 77_[-1]_15 chr3:169966446-169966946 9.1e-05 65_[+1]_27 chr19:11374500-11375000 9.1e-05 8_[+1]_84 chr2:55268948-55269448 9.1e-05 32_[-1]_60 chr6:73310124-73310624 9.1e-05 80_[+1]_12 chr1:12019270-12019770 9.1e-05 19_[-1]_73 chr17:45431497-45431997 9.1e-05 18_[+1]_74 chr1:179882481-179882981 9.1e-05 33_[-1]_59 chr11:28110016-28110516 9.1e-05 82_[+1]_10 chr4:141133263-141133763 9.1e-05 73_[-1]_19 chr4:30719306-30719806 9.1e-05 49_[-1]_43 chr1:22052442-22052942 0.00012 36_[-1]_56 chr19:52189757-52190257 0.00012 20_[-1]_72 chr19:49487312-49487812 0.00012 51_[-1]_41 chr3:5188626-5189126 0.00012 37_[+1]_55 chr1:150067015-150067515 0.00012 36_[+1]_56 chr19:18437025-18437525 0.00012 67_[-1]_25 chr16:1826943-1827443 0.00012 73_[+1]_19 chr1:1724164-1724664 0.00012 25_[+1]_67 chr16:30787104-30787604 0.00012 29_[-1]_63 chr10:102152082-10215258 0.00012 65_[-1]_27 chr11:65711838-65712338 0.00012 78_[+1]_14 chr11:64335069-64335569 0.00012 75_[-1]_17 chrX:47362024-47362524 0.00012 19_[+1]_73 chr10:102917690-10291819 0.00012 56_[+1]_36 chr8:37514258-37514758 0.00012 44_[-1]_48 chr6:166342278-166342778 0.00015 44_[-1]_48 chr19:4791364-4791864 0.00015 23_[+1]_69 chr5:150436054-150436554 0.00015 53_[+1]_39 chr19:38899723-38900223 0.00015 88_[-1]_4 chr8:125091536-125092036 0.00015 21_[-1]_71 chr8:28445272-28445772 0.00015 45_[+1]_47 chr15:65869155-65869655 0.00015 36_[+1]_56 chr16:67846504-67847004 0.00015 23_[+1]_69 chr1:218304614-218305114 0.00015 90_[-1]_2 chr5:111757912-111758412 0.00015 66_[-1]_26 chr10:132335549-13233604 0.00015 45_[+1]_47 chr4:75673215-75673715 0.00018 33_[-1]_59 chr18:62325672-62326172 0.00018 62_[-1]_30 chr19:12610743-12611243 0.00018 55_[-1]_37 chr19:39031582-39032082 0.00018 88_[+1]_4 chrX:48003748-48004248 0.00018 73_[+1]_19 chr19:38975033-38975533 0.00018 35_[+1]_57 chr5:181222311-181222811 0.00018 55_[-1]_37 chr22:39399547-39400047 0.00018 38_[+1]_54 chr19:2096193-2096693 0.00018 26_[+1]_66 chr19:36528253-36528753 0.00018 20_[+1]_72 chr1:144551635-144552135 0.00018 15_[+1]_77 chr9:129334440-129334940 0.00018 81_[+1]_11 chr19:38336598-38337098 0.00018 68_[+1]_24 chr20:35742048-35742548 0.00023 50_[+1]_42 chr16:24539321-24539821 0.00023 15_[-1]_77 chrX:24054469-24054969 0.00023 8_[+1]_84 chr19:47608910-47609410 0.00023 4_[-1]_88 chr19:39445297-39445797 0.00023 9_[-1]_83 chr18:76451352-76451852 0.00023 82_[-1]_10 chr19:52189960-52190460 0.00023 63_[+1]_29 chr19:37077905-37078405 0.00026 25_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGGGGC width=8 seqs=188 chr20:44885348-44885848 ( 4) GCAGGGGC 1 chr15:72473957-72474457 ( 83) GCAGGGGC 1 chr14:91510071-91510571 ( 63) GCAGGGGC 1 chr11:62599180-62599680 ( 38) GCAGGGGC 1 chr2:55617407-55617907 ( 47) GCAGGGGC 1 chr19:49496137-49496637 ( 52) GCAGGGGC 1 chr8:100951822-100952322 ( 71) GCAGGGGC 1 chr19:18157569-18158069 ( 67) GCAGGGGC 1 chr19:37594262-37594762 ( 4) GCAGGGGC 1 chr19:42220110-42220610 ( 49) GCAGGGGC 1 chr17:64507284-64507784 ( 43) GCAGGGGC 1 chr19:19385101-19385601 ( 54) GCAGGGGC 1 chr19:57350985-57351485 ( 52) GCAGGGGC 1 chr11:46617807-46618307 ( 56) GCAGGGGC 1 chr1:26900239-26900739 ( 66) GCAGGGGC 1 chr2:73214205-73214705 ( 75) GCAGGGGC 1 chr19:38684246-38684746 ( 62) GCAGGGGC 1 chrX:106611717-106612217 ( 56) GCAGGGGC 1 chr20:50790685-50791185 ( 71) GCAGGGGC 1 chr1:5992500-5993000 ( 26) GCAGGGGC 1 chr17:57849899-57850399 ( 26) GCAGGGGC 1 chr17:32142567-32143067 ( 35) GCAGGGGC 1 chr20:34302464-34302964 ( 20) GCAGGGGC 1 chr5:57173477-57173977 ( 77) GCAGGGGC 1 chrX:47659095-47659595 ( 26) GCAGGGGC 1 chr19:50384235-50384735 ( 84) GCAGGGGC 1 chr20:59032200-59032700 ( 16) GCAGGGGC 1 chr20:49219114-49219614 ( 15) GCAGGGGC 1 chr10:99519952-99520452 ( 10) GCAGGGGC 1 chr3:128617779-128618279 ( 90) GCAGGGGC 1 chr19:34134487-34134987 ( 18) GCAGGGGC 1 chr3:48429817-48430317 ( 42) GCAGGGGC 1 chr10:122504470-12250497 ( 72) GCAGGGGC 1 chr19:17303135-17303635 ( 52) GCAGGGGC 1 chr15:90932317-90932817 ( 52) GCAGGGGC 1 chr2:10689701-10690201 ( 38) GCAGGGGC 1 chr8:9555604-9556104 ( 15) GCAGGGGC 1 chr17:42554478-42554978 ( 56) GCAGGGGC 1 chr19:36127794-36128294 ( 54) GCAGGGGC 1 chr17:76557493-76557993 ( 57) GCAGGGGC 1 chr1:26787809-26788309 ( 11) GCAGGGGC 1 chr10:43574332-43574832 ( 31) GCAGGGGC 1 chr12:4321022-4321522 ( 1) GCAGGGGC 1 chr10:17201384-17201884 ( 38) GCAGGGGC 1 chr2:86623716-86624216 ( 1) GCAGGGGC 1 chr5:80487825-80488325 ( 51) GCAGGGGC 1 chr16:4253860-4254360 ( 53) GCAGGGGC 1 chr8:42271503-42272003 ( 40) GCAGGGGC 1 chr10:25933957-25934457 ( 92) GCAGGGGC 1 chr5:179818831-179819331 ( 33) GCAGGGGC 1 chr1:225923958-225924458 ( 36) GCAGGGGC 1 chr1:202926999-202927499 ( 37) GCAGGGGC 1 chr22:23913965-23914465 ( 39) GCAGGGGC 1 chr1:193121798-193122298 ( 39) GCAGGGGC 1 chr6:18263717-18264217 ( 51) GCAGGGGC 1 chr1:16904777-16905277 ( 15) GCAGGGGC 1 chr19:58554745-58555245 ( 28) GCAGGGGC 1 chr19:18282236-18282736 ( 74) GCAGGGGC 1 chr19:4455640-4456140 ( 28) GCAGGGGC 1 chr2:85327808-85328308 ( 25) GCAGGGGC 1 chr19:13774252-13774752 ( 31) GCAGGGGC 1 chr22:41446617-41447117 ( 68) GCAGGGGC 1 chr16:30534659-30535159 ( 26) GCAGGGGC 1 chr22:36366355-36366855 ( 60) GCAGGGGC 1 chr14:20684148-20684648 ( 78) GCAGGGGC 1 chr22:31749814-31750314 ( 21) GCAGGGGC 1 chr14:35825974-35826474 ( 26) GCAGGGGC 1 chr5:103562302-103562802 ( 25) GCAGGGGC 1 chr17:75855458-75855958 ( 31) GCAGGGGC 1 chr12:22544249-22544749 ( 24) GCAGGGGC 1 chr2:165953696-165954196 ( 4) GCAGGGGC 1 chr19:36418507-36419007 ( 29) GCAGGGGC 1 chr14:22982542-22983042 ( 35) GCAGGGGC 1 chr17:8121803-8122303 ( 68) GCAGGGGC 1 chr19:8240325-8240825 ( 29) GCAGGGGC 1 chr6:133952055-133952555 ( 41) GCAGGGGC 1 chr13:20567103-20567603 ( 3) GCAGGGGC 1 chr10:100346888-10034738 ( 8) GCAGGGGC 1 chr2:237085601-237086101 ( 51) GCAGGGGC 1 chr21:44454952-44455452 ( 81) GCAGGGGC 1 chr11:62791663-62792163 ( 56) GCAGGGGC 1 chr1:26500429-26500929 ( 52) GCAGGGGC 1 chr22:19984259-19984759 ( 86) GCAGGGGC 1 chr2:44167864-44168364 ( 46) GCAGGGGC 1 chr19:36573132-36573632 ( 70) GCAGGGGC 1 chr6:24774863-24775363 ( 83) GCAGGGGC 1 chr19:38851514-38852014 ( 7) GCAGGGGC 1 chr17:43983587-43984087 ( 78) GCAGGGGC 1 chr20:38730918-38731418 ( 12) GCAGGGGC 1 chr10:62268465-62268965 ( 61) GCAGGGGC 1 chr3:4978431-4978931 ( 25) GCAGGGGC 1 chr17:17913881-17914381 ( 23) GCAGGGGC 1 chr1:225428300-225428800 ( 90) GCAGGGGC 1 chr6:108562571-108563071 ( 65) GCAGGGGC 1 chr8:43139953-43140453 ( 52) GCAGGGGC 1 chr14:23640561-23641061 ( 53) GCAGGGGC 1 chr1:200669453-200669953 ( 17) GCAGGGGC 1 chr7:129948887-129949387 ( 6) GCAGGGGC 1 chr1:153783457-153783957 ( 92) GCAGGGGC 1 chr19:39480359-39480859 ( 44) GCAGGGGC 1 chr15:49169779-49170279 ( 61) GCAGGGGC 1 chr2:168455858-168456358 ( 38) GCAGGGGC 1 chr3:9397295-9397795 ( 84) CCAGGGGC 1 chr1:52365052-52365552 ( 65) CCAGGGGC 1 chr14:60485848-60486348 ( 34) CCAGGGGC 1 chr18:21612102-21612602 ( 25) CCAGGGGC 1 chr3:9749736-9750236 ( 32) CCAGGGGC 1 chr15:70196503-70197003 ( 30) CCAGGGGC 1 chr14:103520682-10352118 ( 17) CCAGGGGC 1 chr12:51026276-51026776 ( 51) CCAGGGGC 1 chr1:147172138-147172638 ( 66) CCAGGGGC 1 chr8:30727845-30728345 ( 6) CCAGGGGC 1 chr11:67277288-67277788 ( 34) CCAGGGGC 1 chr19:37466994-37467494 ( 28) CCAGGGGC 1 chr6:6008485-6008985 ( 78) CCAGGGGC 1 chr5:96934781-96935281 ( 4) CCAGGGGC 1 chr1:155000848-155001348 ( 23) CCAGGGGC 1 chr1:228781126-228781626 ( 7) CCAGGGGC 1 chr21:46323600-46324100 ( 31) CCAGGGGC 1 chr7:99465945-99466445 ( 64) CCAGGGGC 1 chr16:12803296-12803796 ( 41) CCAGGGGC 1 chr11:65083940-65084440 ( 41) CCAGGGGC 1 chr12:47812638-47813138 ( 39) CCAGGGGC 1 chr19:42280198-42280698 ( 44) CCAGGGGC 1 chr17:1463127-1463627 ( 53) CCAGGGGC 1 chr1:225777840-225778340 ( 37) CCAGGGGC 1 chr16:67226742-67227242 ( 35) CCAGGGGC 1 chr12:50102866-50103366 ( 48) CCAGGGGC 1 chr6:75748731-75749231 ( 75) CCAGGGGC 1 chr15:75368255-75368755 ( 15) CCAGGGGC 1 chr20:38472556-38473056 ( 78) CCAGGGGC 1 chr3:169966446-169966946 ( 66) CCAGGGGC 1 chr19:11374500-11375000 ( 9) CCAGGGGC 1 chr2:55268948-55269448 ( 33) CCAGGGGC 1 chr6:73310124-73310624 ( 81) CCAGGGGC 1 chr1:12019270-12019770 ( 20) CCAGGGGC 1 chr17:45431497-45431997 ( 19) CCAGGGGC 1 chr1:179882481-179882981 ( 34) CCAGGGGC 1 chr11:28110016-28110516 ( 83) CCAGGGGC 1 chr4:141133263-141133763 ( 74) CCAGGGGC 1 chr4:30719306-30719806 ( 50) CCAGGGGC 1 chr1:22052442-22052942 ( 37) ACAGGGGC 1 chr19:52189757-52190257 ( 21) ACAGGGGC 1 chr19:49487312-49487812 ( 52) ACAGGGGC 1 chr3:5188626-5189126 ( 38) ACAGGGGC 1 chr1:150067015-150067515 ( 37) ACAGGGGC 1 chr19:18437025-18437525 ( 68) ACAGGGGC 1 chr16:1826943-1827443 ( 74) ACAGGGGC 1 chr1:1724164-1724664 ( 26) ACAGGGGC 1 chr16:30787104-30787604 ( 30) ACAGGGGC 1 chr10:102152082-10215258 ( 66) ACAGGGGC 1 chr11:65711838-65712338 ( 79) ACAGGGGC 1 chr11:64335069-64335569 ( 76) ACAGGGGC 1 chrX:47362024-47362524 ( 20) ACAGGGGC 1 chr10:102917690-10291819 ( 57) ACAGGGGC 1 chr8:37514258-37514758 ( 45) ACAGGGGC 1 chr6:166342278-166342778 ( 45) TCAGGGGC 1 chr19:4791364-4791864 ( 24) TCAGGGGC 1 chr5:150436054-150436554 ( 54) TCAGGGGC 1 chr19:38899723-38900223 ( 89) TCAGGGGC 1 chr8:125091536-125092036 ( 22) TCAGGGGC 1 chr8:28445272-28445772 ( 46) TCAGGGGC 1 chr15:65869155-65869655 ( 37) TCAGGGGC 1 chr16:67846504-67847004 ( 24) TCAGGGGC 1 chr1:218304614-218305114 ( 91) TCAGGGGC 1 chr5:111757912-111758412 ( 67) TCAGGGGC 1 chr10:132335549-13233604 ( 46) TCAGGGGC 1 chr4:75673215-75673715 ( 34) GCAGGGGT 1 chr18:62325672-62326172 ( 63) GCAGGGGT 1 chr19:12610743-12611243 ( 56) GCAGGGGT 1 chr19:39031582-39032082 ( 89) GCAGGGGT 1 chrX:48003748-48004248 ( 74) GCAGGGGT 1 chr19:38975033-38975533 ( 36) GCAGGGGT 1 chr5:181222311-181222811 ( 56) GCAGGGGT 1 chr22:39399547-39400047 ( 39) GCAGGGGT 1 chr19:2096193-2096693 ( 27) GCAGGGGT 1 chr19:36528253-36528753 ( 21) GCAGGGGT 1 chr1:144551635-144552135 ( 16) GCAGGGGT 1 chr9:129334440-129334940 ( 82) GCAGGGGT 1 chr19:38336598-38337098 ( 69) GCAGGGGT 1 chr20:35742048-35742548 ( 51) GCACGGGC 1 chr16:24539321-24539821 ( 16) GCACGGGC 1 chrX:24054469-24054969 ( 9) GCACGGGC 1 chr19:47608910-47609410 ( 5) GCACGGGC 1 chr19:39445297-39445797 ( 10) GCACGGGC 1 chr18:76451352-76451852 ( 83) GCACGGGC 1 chr19:52189960-52190460 ( 64) GCACGGGC 1 chr19:37077905-37078405 ( 26) CCAGGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 55800 bayes= 8.63507 E= 5.6e-098 -131 -50 110 -176 -1420 173 -1420 -1420 233 -1420 -1420 -1420 -1420 -302 167 -1420 -1420 -1420 173 -1420 -1420 -1420 173 -1420 -1420 -1420 173 -1420 -1420 162 -1420 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 188 E= 5.6e-098 0.079787 0.212766 0.648936 0.058511 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.037234 0.962766 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.925532 0.000000 0.074468 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGGGC MEME-1 regular expression -------------------------------------------------------------------------------- [GC]CAGGGGC -------------------------------------------------------------------------------- Time 422.04 secs. ******************************************************************************** ******************************************************************************** MOTIF RGGARACCCCGB MEME-2 width = 12 sites = 104 llr = 1044 E-value = 2.8e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGARACCCCGB MEME-2 Description -------------------------------------------------------------------------------- Simplified A 31:958::::11 pos.-specific C :::1::aaa9:2 probability G 59a:52::::72 matrix T 1::::::::114 bits 2.3 2.1 1.9 1.6 ** *** Relative 1.4 ** **** Entropy 1.2 ********* (14.5 bits) 0.9 ********* 0.7 ********** 0.5 *********** 0.2 ************ 0.0 ------------ Multilevel GGGAAACCCCGT consensus A G C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARACCCCGB MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr2:55232385-55232885 + 71 1.06e-07 CGGGAGCTCC GGGAAACCCCGT GGGCCTGCGC chr10:73096934-73097434 - 16 1.06e-07 ACAGGAGCGG GGGAAACCCCGT GGTAACCACG chr17:8127444-8127944 + 45 1.06e-07 ctgccaacat gggaaaccccgt ctgtactaaa chr6:131063502-131064002 + 55 1.06e-07 GGAGGGGTTG GGGAAACCCCGT GGAGGAAAGG chr1:28235297-28235797 - 30 1.06e-07 GGCCAACATG GGGAAACCCCGT CTCTACTAAA chr19:3095360-3095860 + 44 1.06e-07 TTCCTGTTCC GGGAAACCCCGT ACTCCTCTTG chr8:100951822-100952322 - 40 1.76e-07 TGGTGATTGG AGGAAACCCCGT GTCTGCGGAG chr2:9630965-9631465 - 58 1.76e-07 ATCTAATTGG AGGAAACCCCGT GGCCGAAGCC chr10:5812474-5812974 + 61 1.76e-07 AAGACTTGTC AGGAAACCCCGT ACTCGGCTTT chr1:89994504-89995004 + 26 1.76e-07 GTCTCCATGG AGGAAACCCCGT AAGTACTTAC chr19:1905529-1906029 + 2 3.38e-07 C GGGAGACCCCGT ATCCTCCAGC chr9:128419102-128419602 + 74 3.38e-07 AAAGGCTGAA GGGAGACCCCGT GCTGTTCCTA chr12:42325938-42326438 - 65 3.38e-07 CTGGCCCTCC GGGAGACCCCGT AAATGCAGCC chr9:76394461-76394961 + 19 5.14e-07 GGAACTAATG TGGAAACCCCGT TTTCAGCCTG chr1:23344121-23344621 - 18 8.39e-07 AAGCAGTTCC GGGAAACCCCGC GTGCTGCCGG chrX:154397513-154398013 - 16 8.39e-07 CTCATGGCCT GGGAAACCCCGG GGCATCTCTA chr22:42090849-42091349 - 28 8.39e-07 AGGACGCTGA GGGAAACCCCGC AGTCGCTCGG chr15:73051837-73052337 - 58 8.39e-07 GCTGGCGTCA GGGAAACCCCGG AGAAGCGGAT chr8:94553414-94553914 - 73 1.45e-06 TTTGAACCAC TGGAGACCCCGT AGTCCCCATC chr22:36366355-36366855 - 28 1.45e-06 GGATGTTCCC GGGAAACCCTGT ACCTAGGCAA chr6:166342278-166342778 + 61 2.06e-06 GACGCCCACC AGGAAACCCCGA ACCCGAAACC chr12:56299842-56300342 + 39 2.06e-06 GGGTGTGGGA GGGAGACCCCGG CGCCGGAGGG chr9:121201644-121202144 - 41 2.06e-06 CGAGGGTGAC AGGAAACCCTGT GCAGGGAGCG chr2:176157954-176158454 + 71 2.06e-06 CAGCCCGAGT GGGAGACCCCGG GGCGACGGGA chr16:1770234-1770734 + 28 2.06e-06 CTCCTCGGGC AGGAAACCCTGT ACGCCAGGGA chr1:22052442-22052942 + 55 2.45e-06 CCGGCAGCCG AGGAGACCCCGC GCAGTGCTGC chr13:21176395-21176895 + 40 2.45e-06 CCGAGGCCCC AGGAGACCCCGC GAGACGGGTG chr1:183471126-183471626 + 81 2.45e-06 GGCAGTTGTG GGGAAACCCCTT GCCCTTCC chr19:2739966-2740466 - 7 2.61e-06 GCTCAGCGGG AGGAAACCCCTT TCCTGT chr5:142324323-142324823 - 38 3.39e-06 TCTGAGACTC GGGAAGCCCCGT GCGTGTCCCG chr1:1116138-1116638 - 67 3.39e-06 GCGGTCGCCC GGGAGACCCCGA CGACGCCCCG chr6:44387687-44388187 + 66 3.76e-06 GGGGGCGACG AGGAGACCCTGT GGGGTCTGCG chr11:65711838-65712338 - 20 3.76e-06 GAGCCCTAGG TGGAAACCCCAT AACGTGCACA chr1:150234416-150234916 + 63 4.08e-06 TCCGACTGAC GGGAAACCCCAC ACGGGGCGGG chr7:139230779-139231279 + 62 4.08e-06 TAAACTGCTC GGGAAACCCCAG AACCCTCCCT chr1:212477103-212477603 + 60 4.08e-06 CATCTGGCCT GGGAAACCCCAG ACCTGCTCTT chr19:37655756-37656256 + 74 4.41e-06 AGTTGGATGG AGGAAACCCCAG TATCGCGAGC chr7:77538603-77539103 + 33 4.41e-06 ACTGGGGCGT TGGAAACCCTGT AGGTCTGGGG chr8:77000459-77000959 + 57 5.48e-06 AAGCGCTCCC GAGAGACCCCGT AGAGCGGGCC chr6:31462759-31463259 - 44 6.38e-06 AGCGGAGCTC GGGAAACCCCAA AGCTGAGCCG chr1:15798990-15799490 - 40 6.38e-06 GAGCAGTCTT GGGAAACCCCAA GCTGCCAGGC chr7:150049121-150049621 + 59 6.38e-06 AACGTGGGCC GGGAAACCCCAA CTCCAGAGGG chr15:72473957-72474457 - 61 7.03e-06 GTGGAGCCCG GGGAGACCCCAC GGCCCGGCCT chr12:27780624-27781124 - 11 7.64e-06 GAGCTTGGGG AGGAGACCCCAG GAGGTGGAAC chr6:42048021-42048521 - 18 7.64e-06 CCAGCTGATC TGGAAGCCCCGT GGCTTTACCG chr19:3761715-3762215 + 88 7.64e-06 GGAAGCGTCG TGGAGACCCTGT T chr19:12484493-12484993 + 71 7.64e-06 TTCTGGGGTG AGGAGACCCCAG AGCGGAGCGC chr12:57771812-57772312 - 81 8.82e-06 ATTTGGTA GAGAAACCCCGG ACTGGGATCA chr1:234676110-234676610 + 53 8.82e-06 gattctggat gggaagccccgg aggaagccac chr19:44207264-44207764 - 68 8.82e-06 AGCAACTAAA GAGAAACCCCGG ATCACTTCCC chr1:202143696-202144196 - 47 9.89e-06 TTGCCGGAAG AGGAAGCCCCGG CCCTATTGAG chrX:77895288-77895788 + 39 1.11e-05 CAGCCCTGCC GGGAGACCCCTC ACATTACGTC chr12:121801299-12180179 - 23 1.11e-05 TGCCCCTTCG AGGAAACCCTTT TGCAGGCCAA chr3:57596932-57597432 + 52 1.11e-05 AAGGGGTTTG GGGCGACCCCGT GCTTTCTCCT chr1:200739054-200739554 - 64 1.11e-05 CCTCGGAGCG GGGAGACCCCTC AGGCCCCGGG chr1:234607973-234608473 + 45 1.11e-05 TGCTGGGAAA GGAAAACCCCGT GTCAGAGCGT chr19:12610743-12611243 - 18 1.19e-05 TCAAGGGGCC AGGAGACCCCAA GCTAAGCACA chr7:140396262-140396762 - 38 1.19e-05 AATGTGGTTT TGGAAACCCTGG AATAAAATGA chr11:18526390-18526890 - 4 1.27e-05 CGCCTGGTGC GGGAATCCCCGT ACG chr10:94362838-94363338 + 57 1.27e-05 ACTGGCACGA GGGAAGCCCCGA GGGCGTCGGT chr20:44885348-44885848 + 71 1.47e-05 CGTGGGGCCG TGGCAACCCCGT GCCTCGCTTG chr19:18157569-18158069 + 43 1.47e-05 CCATCACTCA GGGAGGCCCCGC AGGCCCCGGC chr19:3573547-3574047 + 78 1.47e-05 GCTGAGCTGG GGGAGGCCCCGG GCTCCCGCCC chr14:60485848-60486348 + 52 1.47e-05 TACCAGCCCT GAGAGACCCCGC GGAGCACGCC chr20:50790685-50791185 - 30 1.47e-05 GCAGCCCTTG GGGAGGCCCCGG ACAGCCGCGA chr12:50102866-50103366 + 66 1.47e-05 GGCAGTACCT TGGAAACCCCTG AGAGGAGGAG chr16:24539321-24539821 + 35 1.70e-05 ATCCCTGCTT AAGAGACCCCGC AGTGGGGCGC chr20:63973775-63974275 - 42 1.70e-05 AGGGGCGTCT GGGCAACCCCGC GCAGAGGCTG chr1:61725042-61725542 + 41 1.70e-05 GAATCACATT GGGAGACCCTTT TAAAATATGC chr5:57173477-57173977 - 86 1.70e-05 TCG AGGAGGCCCCGG AGCAGGGGCG chr6:85643816-85644316 + 71 1.70e-05 GGCTTGGACG CGGAAACCCCGG CTGCTTTTGA chr17:44899470-44899970 - 78 1.70e-05 CAGAACAGGA GGGCAACCCCGC GCAGACCACG chr6:42142089-42142589 - 32 1.70e-05 ATCTTCACCC AGGAGGCCCCGG AGGAGGGGAC chr15:57706416-57706916 + 88 1.92e-05 TTCGGCTCGA AGAAGACCCCGT T chr6:31497885-31498385 - 38 1.92e-05 GAAACCCGTG AGAAGACCCCGT CGAAATTTAG chr14:73136476-73136976 + 49 2.08e-05 ggttggggct gggGAACCCCGT GTGGGAAACC chr19:47608910-47609410 + 23 2.56e-05 GGGGCCGTCT CGGAGACCCCGC GCCGACGGCT chr1:107056308-107056808 + 89 2.56e-05 GCCGCCGGCC GGGCGACCCCGC chr3:149129456-149129956 - 9 2.56e-05 GCAGGGCGCC CGGAGACCCCGC GCTGACCG chr18:62325672-62326172 + 80 2.97e-05 CCAGCTCGCC TGGAGGCCCCGC ACGGCGGGG chr6:169751945-169752445 + 59 2.97e-05 ctgggcgacg gcgagaccccgt ctccaaaaTG chr19:58499256-58499756 + 17 2.97e-05 GCCCCGCCCC GAGAAACCCTGC CTCGGACCGG chr19:49487312-49487812 + 70 3.22e-05 TTCAAGGGAT AAGAAACCCTGC GACAAAACCT chr17:28719752-28720252 + 35 3.22e-05 GAACGAGCAT TGGAGACCCTTT TCACAAGATG chr12:106955342-10695584 + 39 3.22e-05 GAAGAAGGCG GGGAGACCCCCG GAGGAGGGGC chr15:75450729-75451229 + 79 3.22e-05 ATCTACACGC GGGAGACCCCCC CCTACCCCTC chr11:2954198-2954698 - 40 3.22e-05 ATTGTGGCTT AGGAAACCCCCA TGCCTAATCT chrX:54492185-54492685 + 55 3.22e-05 ATTGAAGCTC AGGAAACCCTCT CTGTCTCTCT chr16:29811216-29811716 + 11 3.55e-05 TGGAGGTTTG AAGAGGCCCCGT CAGAAACCCA chr1:107057375-107057875 + 44 3.55e-05 AGGGGAGTCG GAGAAACCCCTG GTGCTGTCCA chr6:153002830-153003330 - 41 4.10e-05 ACTGCGGCTC TGGAGGCCCCGA CTCAGTGCAT chr11:62599180-62599680 + 56 4.46e-05 CAGATGGGGC TGGAAACCCTAA AGGGCCAAGG chr7:100450327-100450827 - 31 4.86e-05 CCTCTGGCTG GGGAAGCCCCTA CGGCCTAATG chr19:18437025-18437525 + 86 4.86e-05 AAGACTCCCG AGGAGTCCCCGC TAC chr16:25257944-25258444 - 30 4.86e-05 CGCCAGACAC AGGAGTCCCCGC TCCCGTGCTC chr2:70301746-70302246 + 65 4.86e-05 AGCTCAGCCA TGGCGACCccgc gctgccccgc chr19:47243984-47244484 + 63 5.18e-05 GGCGGAGGCC GGGCGGCCCCGT GGCTTCCGGA chr17:7484009-7484509 + 67 5.53e-05 GGGCCTGCGC AGGCGGCCCCGT AGCGCAAGGG chr19:34134487-34134987 - 81 5.91e-05 CGGCGCCG GCGAGACCCCGG GCCGGTTGCT chr16:30814140-30814640 - 57 6.38e-05 CTGCCCGTGG AGGCGACCCCAG CGGCCCAGAC chr6:133952055-133952555 - 28 6.38e-05 TGCAGGGGCC GGGGGACCCCGG GGGCGCACAA chr5:96934781-96935281 - 32 6.99e-05 GTGCCAAATC GGGCAGCCCCGC TAGCCTCCGA chr22:30423854-30424354 + 55 6.99e-05 ACAGTGACGG CGGAGACCCTGC CCCGCCAGCT chr11:67277288-67277788 + 52 8.86e-05 CTGTCGGCCC AGGGAGCCCCGT GGTGGGGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARACCCCGB MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:55232385-55232885 1.1e-07 70_[+2]_18 chr10:73096934-73097434 1.1e-07 15_[-2]_73 chr17:8127444-8127944 1.1e-07 44_[+2]_44 chr6:131063502-131064002 1.1e-07 54_[+2]_34 chr1:28235297-28235797 1.1e-07 29_[-2]_59 chr19:3095360-3095860 1.1e-07 43_[+2]_45 chr8:100951822-100952322 1.8e-07 39_[-2]_49 chr2:9630965-9631465 1.8e-07 57_[-2]_31 chr10:5812474-5812974 1.8e-07 60_[+2]_28 chr1:89994504-89995004 1.8e-07 25_[+2]_63 chr19:1905529-1906029 3.4e-07 1_[+2]_87 chr9:128419102-128419602 3.4e-07 73_[+2]_15 chr12:42325938-42326438 3.4e-07 64_[-2]_24 chr9:76394461-76394961 5.1e-07 18_[+2]_70 chr1:23344121-23344621 8.4e-07 17_[-2]_71 chrX:154397513-154398013 8.4e-07 15_[-2]_73 chr22:42090849-42091349 8.4e-07 27_[-2]_61 chr15:73051837-73052337 8.4e-07 57_[-2]_31 chr8:94553414-94553914 1.4e-06 72_[-2]_16 chr22:36366355-36366855 1.4e-06 27_[-2]_61 chr6:166342278-166342778 2.1e-06 60_[+2]_28 chr12:56299842-56300342 2.1e-06 38_[+2]_50 chr9:121201644-121202144 2.1e-06 40_[-2]_48 chr2:176157954-176158454 2.1e-06 70_[+2]_18 chr16:1770234-1770734 2.1e-06 27_[+2]_61 chr1:22052442-22052942 2.5e-06 54_[+2]_34 chr13:21176395-21176895 2.5e-06 39_[+2]_49 chr1:183471126-183471626 2.5e-06 80_[+2]_8 chr19:2739966-2740466 2.6e-06 6_[-2]_82 chr5:142324323-142324823 3.4e-06 37_[-2]_51 chr1:1116138-1116638 3.4e-06 66_[-2]_22 chr6:44387687-44388187 3.8e-06 65_[+2]_23 chr11:65711838-65712338 3.8e-06 19_[-2]_69 chr1:150234416-150234916 4.1e-06 62_[+2]_26 chr7:139230779-139231279 4.1e-06 61_[+2]_27 chr1:212477103-212477603 4.1e-06 59_[+2]_29 chr19:37655756-37656256 4.4e-06 73_[+2]_15 chr7:77538603-77539103 4.4e-06 32_[+2]_56 chr8:77000459-77000959 5.5e-06 56_[+2]_32 chr6:31462759-31463259 6.4e-06 43_[-2]_45 chr1:15798990-15799490 6.4e-06 39_[-2]_49 chr7:150049121-150049621 6.4e-06 58_[+2]_30 chr15:72473957-72474457 7e-06 60_[-2]_28 chr12:27780624-27781124 7.6e-06 10_[-2]_78 chr6:42048021-42048521 7.6e-06 17_[-2]_71 chr19:3761715-3762215 7.6e-06 87_[+2]_1 chr19:12484493-12484993 7.6e-06 70_[+2]_18 chr12:57771812-57772312 8.8e-06 80_[-2]_8 chr1:234676110-234676610 8.8e-06 52_[+2]_36 chr19:44207264-44207764 8.8e-06 67_[-2]_21 chr1:202143696-202144196 9.9e-06 46_[-2]_42 chrX:77895288-77895788 1.1e-05 38_[+2]_50 chr12:121801299-12180179 1.1e-05 22_[-2]_66 chr3:57596932-57597432 1.1e-05 51_[+2]_37 chr1:200739054-200739554 1.1e-05 63_[-2]_25 chr1:234607973-234608473 1.1e-05 44_[+2]_44 chr19:12610743-12611243 1.2e-05 17_[-2]_71 chr7:140396262-140396762 1.2e-05 37_[-2]_51 chr11:18526390-18526890 1.3e-05 3_[-2]_85 chr10:94362838-94363338 1.3e-05 56_[+2]_32 chr20:44885348-44885848 1.5e-05 70_[+2]_18 chr19:18157569-18158069 1.5e-05 42_[+2]_46 chr19:3573547-3574047 1.5e-05 77_[+2]_11 chr14:60485848-60486348 1.5e-05 51_[+2]_37 chr20:50790685-50791185 1.5e-05 29_[-2]_59 chr12:50102866-50103366 1.5e-05 65_[+2]_23 chr16:24539321-24539821 1.7e-05 34_[+2]_54 chr20:63973775-63974275 1.7e-05 41_[-2]_47 chr1:61725042-61725542 1.7e-05 40_[+2]_48 chr5:57173477-57173977 1.7e-05 85_[-2]_3 chr6:85643816-85644316 1.7e-05 70_[+2]_18 chr17:44899470-44899970 1.7e-05 77_[-2]_11 chr6:42142089-42142589 1.7e-05 31_[-2]_57 chr15:57706416-57706916 1.9e-05 87_[+2]_1 chr6:31497885-31498385 1.9e-05 37_[-2]_51 chr14:73136476-73136976 2.1e-05 48_[+2]_40 chr19:47608910-47609410 2.6e-05 22_[+2]_66 chr1:107056308-107056808 2.6e-05 88_[+2] chr3:149129456-149129956 2.6e-05 8_[-2]_80 chr18:62325672-62326172 3e-05 79_[+2]_9 chr6:169751945-169752445 3e-05 58_[+2]_30 chr19:58499256-58499756 3e-05 16_[+2]_72 chr19:49487312-49487812 3.2e-05 69_[+2]_19 chr17:28719752-28720252 3.2e-05 34_[+2]_54 chr12:106955342-10695584 3.2e-05 38_[+2]_50 chr15:75450729-75451229 3.2e-05 78_[+2]_10 chr11:2954198-2954698 3.2e-05 39_[-2]_49 chrX:54492185-54492685 3.2e-05 54_[+2]_34 chr16:29811216-29811716 3.5e-05 10_[+2]_78 chr1:107057375-107057875 3.5e-05 43_[+2]_45 chr6:153002830-153003330 4.1e-05 40_[-2]_48 chr11:62599180-62599680 4.5e-05 55_[+2]_33 chr7:100450327-100450827 4.9e-05 30_[-2]_58 chr19:18437025-18437525 4.9e-05 85_[+2]_3 chr16:25257944-25258444 4.9e-05 29_[-2]_59 chr2:70301746-70302246 4.9e-05 64_[+2]_24 chr19:47243984-47244484 5.2e-05 62_[+2]_26 chr17:7484009-7484509 5.5e-05 66_[+2]_22 chr19:34134487-34134987 5.9e-05 80_[-2]_8 chr16:30814140-30814640 6.4e-05 56_[-2]_32 chr6:133952055-133952555 6.4e-05 27_[-2]_61 chr5:96934781-96935281 7e-05 31_[-2]_57 chr22:30423854-30424354 7e-05 54_[+2]_34 chr11:67277288-67277788 8.9e-05 51_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARACCCCGB MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGARACCCCGB width=12 seqs=104 chr2:55232385-55232885 ( 71) GGGAAACCCCGT 1 chr10:73096934-73097434 ( 16) GGGAAACCCCGT 1 chr17:8127444-8127944 ( 45) GGGAAACCCCGT 1 chr6:131063502-131064002 ( 55) GGGAAACCCCGT 1 chr1:28235297-28235797 ( 30) GGGAAACCCCGT 1 chr19:3095360-3095860 ( 44) GGGAAACCCCGT 1 chr8:100951822-100952322 ( 40) AGGAAACCCCGT 1 chr2:9630965-9631465 ( 58) AGGAAACCCCGT 1 chr10:5812474-5812974 ( 61) AGGAAACCCCGT 1 chr1:89994504-89995004 ( 26) AGGAAACCCCGT 1 chr19:1905529-1906029 ( 2) GGGAGACCCCGT 1 chr9:128419102-128419602 ( 74) GGGAGACCCCGT 1 chr12:42325938-42326438 ( 65) GGGAGACCCCGT 1 chr9:76394461-76394961 ( 19) TGGAAACCCCGT 1 chr1:23344121-23344621 ( 18) GGGAAACCCCGC 1 chrX:154397513-154398013 ( 16) GGGAAACCCCGG 1 chr22:42090849-42091349 ( 28) GGGAAACCCCGC 1 chr15:73051837-73052337 ( 58) GGGAAACCCCGG 1 chr8:94553414-94553914 ( 73) TGGAGACCCCGT 1 chr22:36366355-36366855 ( 28) GGGAAACCCTGT 1 chr6:166342278-166342778 ( 61) AGGAAACCCCGA 1 chr12:56299842-56300342 ( 39) GGGAGACCCCGG 1 chr9:121201644-121202144 ( 41) AGGAAACCCTGT 1 chr2:176157954-176158454 ( 71) GGGAGACCCCGG 1 chr16:1770234-1770734 ( 28) AGGAAACCCTGT 1 chr1:22052442-22052942 ( 55) AGGAGACCCCGC 1 chr13:21176395-21176895 ( 40) AGGAGACCCCGC 1 chr1:183471126-183471626 ( 81) GGGAAACCCCTT 1 chr19:2739966-2740466 ( 7) AGGAAACCCCTT 1 chr5:142324323-142324823 ( 38) GGGAAGCCCCGT 1 chr1:1116138-1116638 ( 67) GGGAGACCCCGA 1 chr6:44387687-44388187 ( 66) AGGAGACCCTGT 1 chr11:65711838-65712338 ( 20) TGGAAACCCCAT 1 chr1:150234416-150234916 ( 63) GGGAAACCCCAC 1 chr7:139230779-139231279 ( 62) GGGAAACCCCAG 1 chr1:212477103-212477603 ( 60) GGGAAACCCCAG 1 chr19:37655756-37656256 ( 74) AGGAAACCCCAG 1 chr7:77538603-77539103 ( 33) TGGAAACCCTGT 1 chr8:77000459-77000959 ( 57) GAGAGACCCCGT 1 chr6:31462759-31463259 ( 44) GGGAAACCCCAA 1 chr1:15798990-15799490 ( 40) GGGAAACCCCAA 1 chr7:150049121-150049621 ( 59) GGGAAACCCCAA 1 chr15:72473957-72474457 ( 61) GGGAGACCCCAC 1 chr12:27780624-27781124 ( 11) AGGAGACCCCAG 1 chr6:42048021-42048521 ( 18) TGGAAGCCCCGT 1 chr19:3761715-3762215 ( 88) TGGAGACCCTGT 1 chr19:12484493-12484993 ( 71) AGGAGACCCCAG 1 chr12:57771812-57772312 ( 81) GAGAAACCCCGG 1 chr1:234676110-234676610 ( 53) GGGAAGCCCCGG 1 chr19:44207264-44207764 ( 68) GAGAAACCCCGG 1 chr1:202143696-202144196 ( 47) AGGAAGCCCCGG 1 chrX:77895288-77895788 ( 39) GGGAGACCCCTC 1 chr12:121801299-12180179 ( 23) AGGAAACCCTTT 1 chr3:57596932-57597432 ( 52) GGGCGACCCCGT 1 chr1:200739054-200739554 ( 64) GGGAGACCCCTC 1 chr1:234607973-234608473 ( 45) GGAAAACCCCGT 1 chr19:12610743-12611243 ( 18) AGGAGACCCCAA 1 chr7:140396262-140396762 ( 38) TGGAAACCCTGG 1 chr11:18526390-18526890 ( 4) GGGAATCCCCGT 1 chr10:94362838-94363338 ( 57) GGGAAGCCCCGA 1 chr20:44885348-44885848 ( 71) TGGCAACCCCGT 1 chr19:18157569-18158069 ( 43) GGGAGGCCCCGC 1 chr19:3573547-3574047 ( 78) GGGAGGCCCCGG 1 chr14:60485848-60486348 ( 52) GAGAGACCCCGC 1 chr20:50790685-50791185 ( 30) GGGAGGCCCCGG 1 chr12:50102866-50103366 ( 66) TGGAAACCCCTG 1 chr16:24539321-24539821 ( 35) AAGAGACCCCGC 1 chr20:63973775-63974275 ( 42) GGGCAACCCCGC 1 chr1:61725042-61725542 ( 41) GGGAGACCCTTT 1 chr5:57173477-57173977 ( 86) AGGAGGCCCCGG 1 chr6:85643816-85644316 ( 71) CGGAAACCCCGG 1 chr17:44899470-44899970 ( 78) GGGCAACCCCGC 1 chr6:42142089-42142589 ( 32) AGGAGGCCCCGG 1 chr15:57706416-57706916 ( 88) AGAAGACCCCGT 1 chr6:31497885-31498385 ( 38) AGAAGACCCCGT 1 chr14:73136476-73136976 ( 49) GGGGAACCCCGT 1 chr19:47608910-47609410 ( 23) CGGAGACCCCGC 1 chr1:107056308-107056808 ( 89) GGGCGACCCCGC 1 chr3:149129456-149129956 ( 9) CGGAGACCCCGC 1 chr18:62325672-62326172 ( 80) TGGAGGCCCCGC 1 chr6:169751945-169752445 ( 59) GCGAGACCCCGT 1 chr19:58499256-58499756 ( 17) GAGAAACCCTGC 1 chr19:49487312-49487812 ( 70) AAGAAACCCTGC 1 chr17:28719752-28720252 ( 35) TGGAGACCCTTT 1 chr12:106955342-10695584 ( 39) GGGAGACCCCCG 1 chr15:75450729-75451229 ( 79) GGGAGACCCCCC 1 chr11:2954198-2954698 ( 40) AGGAAACCCCCA 1 chrX:54492185-54492685 ( 55) AGGAAACCCTCT 1 chr16:29811216-29811716 ( 11) AAGAGGCCCCGT 1 chr1:107057375-107057875 ( 44) GAGAAACCCCTG 1 chr6:153002830-153003330 ( 41) TGGAGGCCCCGA 1 chr11:62599180-62599680 ( 56) TGGAAACCCTAA 1 chr7:100450327-100450827 ( 31) GGGAAGCCCCTA 1 chr19:18437025-18437525 ( 86) AGGAGTCCCCGC 1 chr16:25257944-25258444 ( 30) AGGAGTCCCCGC 1 chr2:70301746-70302246 ( 65) TGGCGACCCCGC 1 chr19:47243984-47244484 ( 63) GGGCGGCCCCGT 1 chr17:7484009-7484509 ( 67) AGGCGGCCCCGT 1 chr19:34134487-34134987 ( 81) GCGAGACCCCGG 1 chr16:30814140-30814640 ( 57) AGGCGACCCCAG 1 chr6:133952055-133952555 ( 28) GGGGGACCCCGG 1 chr5:96934781-96935281 ( 32) GGGCAGCCCCGC 1 chr22:30423854-30424354 ( 55) CGGAGACCCTGC 1 chr11:67277288-67277788 ( 52) AGGGAGCCCCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARACCCCGB MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 10.1672 E= 2.8e-067 59 -297 81 -56 -120 -397 157 -1334 -278 -1334 169 -1334 214 -165 -339 -1334 144 -1334 61 -1334 201 -1334 -80 -278 -1334 173 -1334 -1334 -1334 173 -1334 -1334 -1334 173 -1334 -1334 -1334 150 -1334 -46 -56 -297 128 -104 -91 -33 -33 106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARACCCCGB MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 104 E= 2.8e-067 0.298077 0.038462 0.528846 0.134615 0.086538 0.019231 0.894231 0.000000 0.028846 0.000000 0.971154 0.000000 0.875000 0.096154 0.028846 0.000000 0.538462 0.000000 0.461538 0.000000 0.798077 0.000000 0.173077 0.028846 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.855769 0.000000 0.144231 0.134615 0.038462 0.730769 0.096154 0.105769 0.240385 0.240385 0.413462 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARACCCCGB MEME-2 regular expression -------------------------------------------------------------------------------- [GA]GGA[AG]ACCCCG[TCG] -------------------------------------------------------------------------------- Time 804.00 secs. ******************************************************************************** ******************************************************************************** MOTIF WDWHAYAMAMWMWYAMANAHAH MEME-3 width = 22 sites = 77 llr = 841 E-value = 1.1e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif WDWHAYAMAMWMWYAMANAHAH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 526462647455626563a264 pos.-specific C :2:314142324:424:3:423 probability G :3::::1::2::11:112:1:: matrix T 544324121232432132:423 bits 2.3 2.1 * 1.9 * 1.6 * Relative 1.4 * * * Entropy 1.2 * * * * (15.8 bits) 0.9 * * * * * * * 0.7 * ***** * *** * * * * 0.5 * ******* *** *** * ** 0.2 ***************** **** 0.0 ---------------------- Multilevel TTAAACACAAAAACAAAAACAA consensus AGTTTT A CTCTTCCTC TTT sequence A C T A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDWHAYAMAMWMWYAMANAHAH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:35881943-35882443 + 32 1.54e-11 aaaataaaaa ataaataaataaataaataaat aaataaataa chr5:160008637-160009137 + 17 1.54e-11 tgtctcaaaa ataaataaataaataaataaat aaataaataa chr21:36122963-36123463 + 31 1.54e-11 tctcaaaaaa ataaataaataaataaataaat aaataaataa chr1:59214654-59215154 + 19 5.70e-09 CACCAGTTCA TGTTATACAAACACACAGAAAT GTCATTAAGG chr4:141133263-141133763 - 15 6.99e-09 CACGCACACA TTATACACACACACACACACAC ACACAAACAT chr20:35742048-35742548 + 9 2.65e-08 accagcac acatacacacacacaaacacac GGGGCCTCAC chr17:8127444-8127944 + 58 2.65e-08 aaaccccgtc tgtactaaaaatacaaaaatta gccgggcgtg chr5:17305910-17306410 + 67 3.77e-08 TTTAATGCCA AGTTACACAATCAGAAAGACAA CAATCTGTTT chr10:50463966-50464466 + 7 3.77e-08 tatgtg ttttttaccacaataaaaacaa ACAAgagatt chr6:28349818-28350318 - 66 5.30e-08 ACAAACACAC ACACACACACACACACACACAT ACTCCTGCAA chr1:232682248-232682748 + 72 7.38e-08 AGGTTAAAAA AAACACACACACACCAAGATAA CATAGAA chr1:28235297-28235797 - 7 1.38e-07 AAACCCCGTC TCTACTAAAAATACAAAAATCA GCCGGG chr19:8240325-8240825 - 63 1.61e-07 GAAAACACAC ACACACACACACACACACACAC ACTTGCATAC chr1:156661306-156661806 - 50 1.61e-07 ACACACACAC ACACACACACACACACACACAC GGACTGGGCC chr5:125550183-125550683 - 74 1.61e-07 CACAC ACACACACACACACACACACAC ACCCTTTTAT chr2:176157954-176158454 - 4 1.87e-07 TAGCTCTTCC AAAATAGAAATAAAAAATACAA ACA chrUn_KI270467v1:2915-34 - 44 2.50e-07 AAATATCCAA ATACTCAAAATATATATTACAT ACTGTACATA chr8:25998489-25998989 - 22 3.32e-07 TTACACAGCC AATAACAAATTAAACATCATTA TCTGAGTTTA chr22:40711460-40711960 + 1 4.38e-07 . tcaaacaaaacagaacaaaaaa aCCAagtatt chr6:42781870-42782370 - 50 5.01e-07 TCCTTGAAAT TTTTATCACAAAATTATAATAC ACTCAAAGGG chr3:17730374-17730874 + 60 5.72e-07 accctcaatg agtcctacaaaaatcataaaat catgagtaaa chr7:133492158-133492658 - 55 6.51e-07 AAAGAGAACC ATAAAAGCATACATAATGAAAT GCTATCTTTA chr5:83097803-83098303 - 73 6.51e-07 TATCTT TTACAAATACCATTAATAATCA TTAGTTTCAG chr14:51581291-51581791 + 53 7.41e-07 CCAATTCAAA AGACTTAAAGCAAAACAAACAC ATGGTGGAGA chr9:85743189-85743689 - 56 1.08e-06 CTCTAAGTTC TTAATTACCGCAAAACATAAAT CACTCACTCT chr19:36169238-36169738 + 1 1.08e-06 . agtaataaaatttctcttatct caacacaaag chr10:665554-666054 + 2 1.37e-06 C TTTCCCAAAACAAAACACATCA ATCAAACGAA chr18:59484761-59485261 + 66 1.37e-06 TGTGTGGTTT TTATCTTTAGAAAAACAAACTA AGATGGGGAA chr5:69521089-69521589 - 3 1.37e-06 GAATCATCGT ATACTCATACTATGAAATACCA CC chrUn_KI270467v1:2001-25 + 30 1.55e-06 ctttgagatt ttatgtacagaatataatatat ctttcatgta chr17:46101212-46101712 - 25 1.74e-06 ACTAAATTGT TATTCTTATCTAATACATACAT TTTAGGTTGC chr1:86774466-86774966 + 32 1.95e-06 CTCTCAACTG TTTACCAAAGTATTAAAAAGCA CTTTGTAGCG chr6:143755242-143755742 + 49 2.18e-06 CCTGACAGTT TTATATGAATTAACCAACAGAC CTTGATGTTC chr3:61634622-61635122 - 11 2.18e-06 CACTGGCAAA ACAAACACAGCATATCAGATAT GGCATCACAT chr7:100119256-100119756 - 8 3.04e-06 GGAGTGCTCC TTATATATAGATGTAGAAACAA ACTTTTA chr8:37392936-37393436 - 34 3.39e-06 TGAAGAAAGG AAAAATGAACTATCAAACACTG ATGTAATGCA chr22:24727085-24727585 - 19 3.77e-06 AAGGAGCTCA TGTAATTACAAATGACTCATTT GGAAAACTTT chr16:25049572-25050072 + 33 4.18e-06 tataaaagtg taacacatacaattatgtacaa tacatgaaac chr11:2954198-2954698 - 5 4.63e-06 CTAATCTTTT TATTACATCATCAGCCAGATAT GTAG chr1:85274905-85275405 - 75 5.13e-06 GAAC ATAAATAACTACTGTAGAATAA ATGTTGTCTT chr19:40831788-40832288 + 19 5.67e-06 CTCACGTGCT TGTTACAAAACCAGACACAGCT TTAGGGCTTC chr1:145281007-145281507 - 33 5.67e-06 GCGCGAACGT AGTTCCCTACTATCACAAATTA TGCACTCGAG chr8:109611145-109611645 + 79 6.26e-06 AGAGAAAATA TGTAACCCTGCCATAAAGATAA chr12:56041744-56042244 - 79 6.90e-06 . TTACTCAAATATTCCTTTACAT TCAGCATTTC chr5:88516249-88516749 - 69 6.90e-06 TGCACTTACA AAATATATCCACGCCAAAATTA TACACACAGA chr6:82260185-82260685 - 34 7.60e-06 CTGTGGATTT TAATTTGCAGCAACAATAAACT TCAAGTAATG chr1:228902948-228903448 - 46 7.60e-06 AGGATTGGGA ATAAATGACCAAATATAAACAG TGGAGTGGTG chr18:74861099-74861599 - 4 7.60e-06 ATGGACAGAT TTACACACTGTCTGTCAGATAA AGC chr18:3409079-3409579 + 17 7.60e-06 aaCAAAGCTA TAAAATACTGTATCAAGAAACA ACTgccaggc chr10:77287642-77288142 + 34 8.35e-06 GAGCTCCACT ATTAACACACTTGTCATCACTA AGCCAGGTTG chr1:8626325-8626825 + 26 9.17e-06 accacaaatg acatctccaaccacaaacattc caatcctaag chr19:54115375-54115875 - 76 1.10e-05 ATT TGAAACAACAACTTTATTAGCA CCTGGCACTA chr1:218304614-218305114 - 69 1.10e-05 TGTCAGGGGC TTTTAAAAAAACACAATGTTAG GGGTTTAGCT chr5:175378413-175378913 + 78 1.21e-05 TCATAGTCCA TAAATCACCTCTTCACTAACAC G chr8:37360446-37360946 - 44 1.21e-05 GGCACTCTGC TGTCATATAAACAGTGTAATTT CAGCTGCAAT chr12:58925116-58925616 + 50 1.32e-05 AGTACTTGCT TTATCATTACAATGAATGACAC AGTTTGTGTA chr6:153002830-153003330 - 4 1.32e-05 TGCATGGGAA AGAAATCCTCACTATCAGAAAA CAG chr12:106074988-10607548 + 35 1.32e-05 CACTGACACA AGATTAATAGAAATCTAGATTA GCCTGTGTTC chr19:36070392-36070892 - 62 1.57e-05 GAAAATGATG TTTAACCAACTAGGACAGAGAT AAAACTTGGA chr12:41288168-41288668 - 27 1.57e-05 TGCCACTTGT TATCTAACCATATCACTCACTC AAAACATTAC chr1:224623819-224624319 - 57 1.71e-05 AAAAGAGATA AGATACACAAATAGCAAAATGC TGACACTTGC chr15:67792457-67792957 - 41 1.71e-05 CACAGAGCAG ATTTACAACTTCATCTTGATTT TTAATACCAT chr5:59303227-59303727 + 70 2.37e-05 tttccaaagt tatcttctaaaatttcatagtt tcacgtctt chr7:116218127-116218627 - 64 2.37e-05 CAATGAAACA TGATATCACTTTATCATCAAAC AAAGCAAGGG chrX:54492185-54492685 + 68 2.37e-05 AAACCCTCTC TGTCTCTCTCTTACACACACAC CCTACAACCA chrX:136131069-136131569 - 13 2.56e-05 CCCTGTACAA ACTATATCATTCAATCTGATAA CCGGCACAGG chr12:12611516-12612016 + 72 2.77e-05 GCAGAGACTG TGATAAGAAAAATCACAATTCC CAGAATG chr10:22552774-22553274 + 77 2.77e-05 ACAGGGAAAG TATAATCCTACCTCATAAAACT CT chr1:1375153-1375653 + 50 2.77e-05 TACGGAGGCA AAAAACTACATTTCCCACAATC CCAGGGGGTG chr5:59649185-59649685 - 49 2.77e-05 TCCTAACCAA TTTCAATTACTTATCCTTATCT TGAAGGCCAT chr1:80403323-80403823 + 1 3.00e-05 . TGTATATAATATTACATTACAC CTCATAACCG chr1:234723900-234724400 - 1 3.48e-05 CATTTCTCTC TCTCTCTCTCTCTCACACACAC chr1:233635923-233636423 - 42 3.75e-05 CTTGCTTACA ACAAAACCTAACATCCTTATCA GGGCCCATAA chr3:72904222-72904722 + 25 4.04e-05 AAGGTCTCAT TAAATCCCAACCACTGATACTT GAACTGGCAC chr10:75379153-75379653 - 44 5.00e-05 GCTCGTAAAC AGATCTACTGCATCAAGCAAAT GACATTATTA chr4:139084053-139084553 + 50 6.55e-05 ACCGACACAC ACTCACGCACTCGCACACACTC CGACGCCCGG chr18:59455100-59455600 + 14 1.08e-04 CTTAAAGGGC TAATGTTCACACACTGTAAATA TTCCCCAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDWHAYAMAMWMWYAMANAHAH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35881943-35882443 1.5e-11 31_[+3]_47 chr5:160008637-160009137 1.5e-11 16_[+3]_62 chr21:36122963-36123463 1.5e-11 30_[+3]_48 chr1:59214654-59215154 5.7e-09 18_[+3]_60 chr4:141133263-141133763 7e-09 14_[-3]_64 chr20:35742048-35742548 2.7e-08 8_[+3]_70 chr17:8127444-8127944 2.7e-08 57_[+3]_21 chr5:17305910-17306410 3.8e-08 66_[+3]_12 chr10:50463966-50464466 3.8e-08 6_[+3]_72 chr6:28349818-28350318 5.3e-08 65_[-3]_13 chr1:232682248-232682748 7.4e-08 71_[+3]_7 chr1:28235297-28235797 1.4e-07 6_[-3]_72 chr19:8240325-8240825 1.6e-07 62_[-3]_16 chr1:156661306-156661806 1.6e-07 49_[-3]_29 chr5:125550183-125550683 1.6e-07 73_[-3]_5 chr2:176157954-176158454 1.9e-07 3_[-3]_75 chrUn_KI270467v1:2915-34 2.5e-07 43_[-3]_35 chr8:25998489-25998989 3.3e-07 21_[-3]_57 chr22:40711460-40711960 4.4e-07 [+3]_78 chr6:42781870-42782370 5e-07 49_[-3]_29 chr3:17730374-17730874 5.7e-07 59_[+3]_19 chr7:133492158-133492658 6.5e-07 54_[-3]_24 chr5:83097803-83098303 6.5e-07 72_[-3]_6 chr14:51581291-51581791 7.4e-07 52_[+3]_26 chr9:85743189-85743689 1.1e-06 55_[-3]_23 chr19:36169238-36169738 1.1e-06 [+3]_78 chr10:665554-666054 1.4e-06 1_[+3]_77 chr18:59484761-59485261 1.4e-06 65_[+3]_13 chr5:69521089-69521589 1.4e-06 2_[-3]_76 chrUn_KI270467v1:2001-25 1.5e-06 29_[+3]_49 chr17:46101212-46101712 1.7e-06 24_[-3]_54 chr1:86774466-86774966 2e-06 31_[+3]_47 chr6:143755242-143755742 2.2e-06 48_[+3]_30 chr3:61634622-61635122 2.2e-06 10_[-3]_68 chr7:100119256-100119756 3e-06 7_[-3]_71 chr8:37392936-37393436 3.4e-06 33_[-3]_45 chr22:24727085-24727585 3.8e-06 18_[-3]_60 chr16:25049572-25050072 4.2e-06 32_[+3]_46 chr11:2954198-2954698 4.6e-06 4_[-3]_74 chr1:85274905-85275405 5.1e-06 74_[-3]_4 chr19:40831788-40832288 5.7e-06 18_[+3]_60 chr1:145281007-145281507 5.7e-06 32_[-3]_46 chr8:109611145-109611645 6.3e-06 78_[+3] chr12:56041744-56042244 6.9e-06 78_[-3] chr5:88516249-88516749 6.9e-06 68_[-3]_10 chr6:82260185-82260685 7.6e-06 33_[-3]_45 chr1:228902948-228903448 7.6e-06 45_[-3]_33 chr18:74861099-74861599 7.6e-06 3_[-3]_75 chr18:3409079-3409579 7.6e-06 16_[+3]_62 chr10:77287642-77288142 8.4e-06 33_[+3]_45 chr1:8626325-8626825 9.2e-06 25_[+3]_53 chr19:54115375-54115875 1.1e-05 75_[-3]_3 chr1:218304614-218305114 1.1e-05 68_[-3]_10 chr5:175378413-175378913 1.2e-05 77_[+3]_1 chr8:37360446-37360946 1.2e-05 43_[-3]_35 chr12:58925116-58925616 1.3e-05 49_[+3]_29 chr6:153002830-153003330 1.3e-05 3_[-3]_75 chr12:106074988-10607548 1.3e-05 34_[+3]_44 chr19:36070392-36070892 1.6e-05 61_[-3]_17 chr12:41288168-41288668 1.6e-05 26_[-3]_52 chr1:224623819-224624319 1.7e-05 56_[-3]_22 chr15:67792457-67792957 1.7e-05 40_[-3]_38 chr5:59303227-59303727 2.4e-05 69_[+3]_9 chr7:116218127-116218627 2.4e-05 63_[-3]_15 chrX:54492185-54492685 2.4e-05 67_[+3]_11 chrX:136131069-136131569 2.6e-05 12_[-3]_66 chr12:12611516-12612016 2.8e-05 71_[+3]_7 chr10:22552774-22553274 2.8e-05 76_[+3]_2 chr1:1375153-1375653 2.8e-05 49_[+3]_29 chr5:59649185-59649685 2.8e-05 48_[-3]_30 chr1:80403323-80403823 3e-05 [+3]_78 chr1:234723900-234724400 3.5e-05 [-3]_78 chr1:233635923-233636423 3.8e-05 41_[-3]_37 chr3:72904222-72904722 4e-05 24_[+3]_54 chr10:75379153-75379653 5e-05 43_[-3]_35 chr4:139084053-139084553 6.6e-05 49_[+3]_29 chr18:59455100-59455600 0.00011 13_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDWHAYAMAMWMWYAMANAHAH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WDWHAYAMAMWMWYAMANAHAH width=22 seqs=77 chr19:35881943-35882443 ( 32) ATAAATAAATAAATAAATAAAT 1 chr5:160008637-160009137 ( 17) ATAAATAAATAAATAAATAAAT 1 chr21:36122963-36123463 ( 31) ATAAATAAATAAATAAATAAAT 1 chr1:59214654-59215154 ( 19) TGTTATACAAACACACAGAAAT 1 chr4:141133263-141133763 ( 15) TTATACACACACACACACACAC 1 chr20:35742048-35742548 ( 9) ACATACACACACACAAACACAC 1 chr17:8127444-8127944 ( 58) TGTACTAAAAATACAAAAATTA 1 chr5:17305910-17306410 ( 67) AGTTACACAATCAGAAAGACAA 1 chr10:50463966-50464466 ( 7) TTTTTTACCACAATAAAAACAA 1 chr6:28349818-28350318 ( 66) ACACACACACACACACACACAT 1 chr1:232682248-232682748 ( 72) AAACACACACACACCAAGATAA 1 chr1:28235297-28235797 ( 7) TCTACTAAAAATACAAAAATCA 1 chr19:8240325-8240825 ( 63) ACACACACACACACACACACAC 1 chr1:156661306-156661806 ( 50) ACACACACACACACACACACAC 1 chr5:125550183-125550683 ( 74) ACACACACACACACACACACAC 1 chr2:176157954-176158454 ( 4) AAAATAGAAATAAAAAATACAA 1 chrUn_KI270467v1:2915-34 ( 44) ATACTCAAAATATATATTACAT 1 chr8:25998489-25998989 ( 22) AATAACAAATTAAACATCATTA 1 chr22:40711460-40711960 ( 1) TCAAACAAAACAGAACAAAAAA 1 chr6:42781870-42782370 ( 50) TTTTATCACAAAATTATAATAC 1 chr3:17730374-17730874 ( 60) AGTCCTACAAAAATCATAAAAT 1 chr7:133492158-133492658 ( 55) ATAAAAGCATACATAATGAAAT 1 chr5:83097803-83098303 ( 73) TTACAAATACCATTAATAATCA 1 chr14:51581291-51581791 ( 53) AGACTTAAAGCAAAACAAACAC 1 chr9:85743189-85743689 ( 56) TTAATTACCGCAAAACATAAAT 1 chr19:36169238-36169738 ( 1) AGTAATAAAATTTCTCTTATCT 1 chr10:665554-666054 ( 2) TTTCCCAAAACAAAACACATCA 1 chr18:59484761-59485261 ( 66) TTATCTTTAGAAAAACAAACTA 1 chr5:69521089-69521589 ( 3) ATACTCATACTATGAAATACCA 1 chrUn_KI270467v1:2001-25 ( 30) TTATGTACAGAATATAATATAT 1 chr17:46101212-46101712 ( 25) TATTCTTATCTAATACATACAT 1 chr1:86774466-86774966 ( 32) TTTACCAAAGTATTAAAAAGCA 1 chr6:143755242-143755742 ( 49) TTATATGAATTAACCAACAGAC 1 chr3:61634622-61635122 ( 11) ACAAACACAGCATATCAGATAT 1 chr7:100119256-100119756 ( 8) TTATATATAGATGTAGAAACAA 1 chr8:37392936-37393436 ( 34) AAAAATGAACTATCAAACACTG 1 chr22:24727085-24727585 ( 19) TGTAATTACAAATGACTCATTT 1 chr16:25049572-25050072 ( 33) TAACACATACAATTATGTACAA 1 chr11:2954198-2954698 ( 5) TATTACATCATCAGCCAGATAT 1 chr1:85274905-85275405 ( 75) ATAAATAACTACTGTAGAATAA 1 chr19:40831788-40832288 ( 19) TGTTACAAAACCAGACACAGCT 1 chr1:145281007-145281507 ( 33) AGTTCCCTACTATCACAAATTA 1 chr8:109611145-109611645 ( 79) TGTAACCCTGCCATAAAGATAA 1 chr12:56041744-56042244 ( 79) TTACTCAAATATTCCTTTACAT 1 chr5:88516249-88516749 ( 69) AAATATATCCACGCCAAAATTA 1 chr6:82260185-82260685 ( 34) TAATTTGCAGCAACAATAAACT 1 chr1:228902948-228903448 ( 46) ATAAATGACCAAATATAAACAG 1 chr18:74861099-74861599 ( 4) TTACACACTGTCTGTCAGATAA 1 chr18:3409079-3409579 ( 17) TAAAATACTGTATCAAGAAACA 1 chr10:77287642-77288142 ( 34) ATTAACACACTTGTCATCACTA 1 chr1:8626325-8626825 ( 26) ACATCTCCAACCACAAACATTC 1 chr19:54115375-54115875 ( 76) TGAAACAACAACTTTATTAGCA 1 chr1:218304614-218305114 ( 69) TTTTAAAAAAACACAATGTTAG 1 chr5:175378413-175378913 ( 78) TAAATCACCTCTTCACTAACAC 1 chr8:37360446-37360946 ( 44) TGTCATATAAACAGTGTAATTT 1 chr12:58925116-58925616 ( 50) TTATCATTACAATGAATGACAC 1 chr6:153002830-153003330 ( 4) AGAAATCCTCACTATCAGAAAA 1 chr12:106074988-10607548 ( 35) AGATTAATAGAAATCTAGATTA 1 chr19:36070392-36070892 ( 62) TTTAACCAACTAGGACAGAGAT 1 chr12:41288168-41288668 ( 27) TATCTAACCATATCACTCACTC 1 chr1:224623819-224624319 ( 57) AGATACACAAATAGCAAAATGC 1 chr15:67792457-67792957 ( 41) ATTTACAACTTCATCTTGATTT 1 chr5:59303227-59303727 ( 70) TATCTTCTAAAATTTCATAGTT 1 chr7:116218127-116218627 ( 64) TGATATCACTTTATCATCAAAC 1 chrX:54492185-54492685 ( 68) TGTCTCTCTCTTACACACACAC 1 chrX:136131069-136131569 ( 13) ACTATATCATTCAATCTGATAA 1 chr12:12611516-12612016 ( 72) TGATAAGAAAAATCACAATTCC 1 chr10:22552774-22553274 ( 77) TATAATCCTACCTCATAAAACT 1 chr1:1375153-1375653 ( 50) AAAAACTACATTTCCCACAATC 1 chr5:59649185-59649685 ( 49) TTTCAATTACTTATCCTTATCT 1 chr1:80403323-80403823 ( 1) TGTATATAATATTACATTACAC 1 chr1:234723900-234724400 ( 1) TCTCTCTCTCTCTCACACACAC 1 chr1:233635923-233636423 ( 42) ACAAAACCTAACATCCTTATCA 1 chr3:72904222-72904722 ( 25) TAAATCCCAACCACTGATACTT 1 chr10:75379153-75379653 ( 44) AGATCTACTGCATCAAGCAAAT 1 chr4:139084053-139084553 ( 50) ACTCACGCACTCGCACACACTC 1 chr18:59455100-59455600 ( 14) TAATGTTCACACACTGTAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDWHAYAMAMWMWYAMANAHAH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.0857 E= 1.1e-037 120 -1291 -1291 146 16 -84 -22 82 159 -1291 -1291 102 97 -15 -1291 77 162 -108 -354 16 -35 51 -1291 107 162 -108 -154 -47 97 55 -1291 -23 180 -73 -1291 -61 82 5 -84 -23 128 -63 -1291 71 120 32 -1291 -23 153 -1291 -195 82 -23 42 -108 53 162 -54 -1291 -12 120 46 -254 -135 168 -1291 -254 65 59 -15 -63 24 230 -1291 -1291 -293 7 27 -195 82 153 -73 -453 24 88 -22 -295 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDWHAYAMAMWMWYAMANAHAH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 77 E= 1.1e-037 0.454545 0.000000 0.000000 0.545455 0.220779 0.168831 0.259740 0.350649 0.597403 0.000000 0.000000 0.402597 0.389610 0.272727 0.000000 0.337662 0.610390 0.142857 0.025974 0.220779 0.155844 0.428571 0.000000 0.415584 0.610390 0.142857 0.103896 0.142857 0.389610 0.441558 0.000000 0.168831 0.688312 0.181818 0.000000 0.129870 0.350649 0.311688 0.168831 0.168831 0.480519 0.194805 0.000000 0.324675 0.454545 0.376623 0.000000 0.168831 0.571429 0.000000 0.077922 0.350649 0.168831 0.402597 0.142857 0.285714 0.610390 0.207792 0.000000 0.181818 0.454545 0.415584 0.051948 0.077922 0.636364 0.000000 0.051948 0.311688 0.298701 0.272727 0.194805 0.233766 0.974026 0.000000 0.000000 0.025974 0.207792 0.363636 0.077922 0.350649 0.571429 0.181818 0.012987 0.233766 0.363636 0.259740 0.038961 0.337662 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDWHAYAMAMWMWYAMANAHAH MEME-3 regular expression -------------------------------------------------------------------------------- [TA][TGA][AT][ATC][AT][CT]A[CA]A[AC][AT][AC][AT][CT][AC][AC][AT][ACT]A[CTA][AT][ATC] -------------------------------------------------------------------------------- Time 1143.14 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCTTCTGGGAAWTGTAGTYC MEME-4 width = 21 sites = 14 llr = 261 E-value = 4.4e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCTTCTGGGAAWTGTAGTYC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 111:1:::::964::1a:::1 pos.-specific C :752:62::::1:2:::::57 probability G 9111311aaa:11:a::9:1: matrix T ::26627:::1148:9:1a42 bits 2.3 * * 2.1 * * 1.9 * ** * 1.6 **** *** * Relative 1.4 * **** **** * Entropy 1.2 * ***** ****** (26.9 bits) 0.9 * ** ***** ****** 0.7 ** ** *************** 0.5 ** ****************** 0.2 ********************* 0.0 --------------------- Multilevel GCCTTCTGGGAAATGTAGTCC consensus TCGTC TC TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTTCTGGGAAWTGTAGTYC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr19:37467195-37467695 - 53 8.12e-11 GGGCCGCGAA GGCCTCTGGGAAATGTAGTTC GGCGCAGGAA chr19:42244561-42245061 - 39 1.51e-10 TCCGCACTTT GCCTTCTGGGTAATGTAGTCT CAACAGGCTT chr9:15422516-15423016 + 21 1.51e-10 CCTGCCCATG GCCTGCCGGGAAATGTAGTTT CTGATGCCCT chr12:56104190-56104690 + 79 2.64e-10 AGCGCGAGAG GCAGGCTGGGAATTGTAGTTC G chr19:44259570-44260070 + 77 5.08e-10 TTCCGCTCGG GCATTCTGGGAAGTGTAGTGC AGA chr10:43574332-43574832 - 78 8.44e-10 CG GCTTGCTGGGACTTGTATTTC GGGGCCCTAG chr19:4791364-4791864 + 41 2.10e-09 CTGTCCTGTG GCCTTTGGGGAAGTGTAGTCT TGAGCCCCCA chr14:35825974-35826474 - 49 2.10e-09 GCCTTCCGAT GCTTGCCGGGAGTTGTAGTTC GTAGGTCTCA chr6:30907816-30908316 + 65 2.10e-09 TCCCCACGGT GCCTTTCGGGATTTGTAGTCA GACGCGCTTC chr5:179023486-179023986 + 39 2.28e-09 GTGCCGCAGC GACGTCTGGGAAATGAAGTCC GGAGGGACAA chr16:46883997-46884497 + 29 2.95e-09 CCGGCGCGGG GCGCTGTGGGACTTGTAGTTC GCGTCACTCT chr19:36573132-36573632 + 7 4.09e-09 CCCTGA GGCCTGTGGGAAACGTAGTCC AACAACGAAA chr1:230978741-230979241 - 61 4.41e-09 CGCCGCGCGG GCTTATTGGGATTCGTAGTCC CGGCACCGGC chr19:44212206-44212706 + 28 1.21e-08 TTCCTTCTGG AAGTTCTGGGAAACGTATTCC AGAACTCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTTCTGGGAAWTGTAGTYC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:37467195-37467695 8.1e-11 52_[-4]_27 chr19:42244561-42245061 1.5e-10 38_[-4]_41 chr9:15422516-15423016 1.5e-10 20_[+4]_59 chr12:56104190-56104690 2.6e-10 78_[+4]_1 chr19:44259570-44260070 5.1e-10 76_[+4]_3 chr10:43574332-43574832 8.4e-10 77_[-4]_2 chr19:4791364-4791864 2.1e-09 40_[+4]_39 chr14:35825974-35826474 2.1e-09 48_[-4]_31 chr6:30907816-30908316 2.1e-09 64_[+4]_15 chr5:179023486-179023986 2.3e-09 38_[+4]_41 chr16:46883997-46884497 2.9e-09 28_[+4]_51 chr19:36573132-36573632 4.1e-09 6_[+4]_73 chr1:230978741-230979241 4.4e-09 60_[-4]_19 chr19:44212206-44212706 1.2e-08 27_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTTCTGGGAAWTGTAGTYC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCTTCTGGGAAWTGTAGTYC width=21 seqs=14 chr19:37467195-37467695 ( 53) GGCCTCTGGGAAATGTAGTTC 1 chr19:42244561-42245061 ( 39) GCCTTCTGGGTAATGTAGTCT 1 chr9:15422516-15423016 ( 21) GCCTGCCGGGAAATGTAGTTT 1 chr12:56104190-56104690 ( 79) GCAGGCTGGGAATTGTAGTTC 1 chr19:44259570-44260070 ( 77) GCATTCTGGGAAGTGTAGTGC 1 chr10:43574332-43574832 ( 78) GCTTGCTGGGACTTGTATTTC 1 chr19:4791364-4791864 ( 41) GCCTTTGGGGAAGTGTAGTCT 1 chr14:35825974-35826474 ( 49) GCTTGCCGGGAGTTGTAGTTC 1 chr6:30907816-30908316 ( 65) GCCTTTCGGGATTTGTAGTCA 1 chr5:179023486-179023986 ( 39) GACGTCTGGGAAATGAAGTCC 1 chr16:46883997-46884497 ( 29) GCGCTGTGGGACTTGTAGTTC 1 chr19:36573132-36573632 ( 7) GGCCTGTGGGAAACGTAGTCC 1 chr1:230978741-230979241 ( 61) GCTTATTGGGATTCGTAGTCC 1 chr19:44212206-44212706 ( 28) AAGTTCTGGGAAACGTATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTTCTGGGAAWTGTAGTYC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.5868 E= 4.4e-016 -147 -1045 162 -1045 -47 124 -108 -1045 -47 73 -108 11 -1045 -49 -108 170 -147 -1045 -8 170 -1045 109 -108 11 -1045 -49 -208 185 -1045 -1045 173 -1045 -1045 -1045 173 -1045 -1045 -1045 173 -1045 223 -1045 -1045 -147 170 -108 -208 -47 111 -1045 -108 111 -1045 -49 -1045 199 -1045 -1045 173 -1045 -147 -1045 -1045 223 233 -1045 -1045 -1045 -1045 -1045 151 -47 -1045 -1045 -1045 233 -1045 73 -208 111 -147 124 -1045 11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTTCTGGGAAWTGTAGTYC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 14 E= 4.4e-016 0.071429 0.000000 0.928571 0.000000 0.142857 0.714286 0.142857 0.000000 0.142857 0.500000 0.142857 0.214286 0.000000 0.214286 0.142857 0.642857 0.071429 0.000000 0.285714 0.642857 0.000000 0.642857 0.142857 0.214286 0.000000 0.214286 0.071429 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.928571 0.000000 0.000000 0.071429 0.642857 0.142857 0.071429 0.142857 0.428571 0.000000 0.142857 0.428571 0.000000 0.214286 0.000000 0.785714 0.000000 0.000000 1.000000 0.000000 0.071429 0.000000 0.000000 0.928571 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.071429 0.428571 0.071429 0.714286 0.000000 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTTCTGGGAAWTGTAGTYC MEME-4 regular expression -------------------------------------------------------------------------------- GC[CT][TC][TG][CT][TC]GGGAA[AT][TC]GTAGT[CT][CT] -------------------------------------------------------------------------------- Time 1465.04 secs. ******************************************************************************** ******************************************************************************** MOTIF ARATAAATAAHDHWAA MEME-5 width = 16 sites = 52 llr = 563 E-value = 3.8e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARATAAATAAHDHWAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7692899177444457 pos.-specific C 11:1:::222213:1: probability G :311:::21:12122: matrix T 2::72115:2333423 bits 2.3 2.1 1.9 ** 1.6 * *** Relative 1.4 * *** * Entropy 1.2 * *** * (15.6 bits) 0.9 * ***** ** * 0.7 ******* ** * * 0.5 ********** * *** 0.2 **************** 0.0 ---------------- Multilevel AAATAAATAAAAAAAA consensus TG T C TTTTTT sequence CGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAAATAAHDHWAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr19:35881943-35882443 + 54 2.23e-11 ataaataaat aaataaataaataaaA tccaagtgat chr21:36122963-36123463 + 57 2.05e-10 ataaataaat aaataaataaataata aaaaaataTG chr5:160008637-160009137 + 39 2.72e-10 ataaataaat aaataaataaataaat aaataaataa chrUn_KI270467v1:2915-34 - 85 9.41e-09 . AAATAAATATTATATA CTGTACATAA chr5:17305910-17306410 + 35 9.50e-08 GTTGCGTGTT AAACAAATAAATTAGA GATTCCTTTA chr8:25998489-25998989 + 62 1.88e-07 AAAGGTTAAC AAAGAAATAACTCAAA TTATCATCTC chr5:124747068-124747568 - 49 2.44e-07 AAACGCCAGC TAATTAAAAATACTAA GCCAAGCTCC chr1:224623819-224624319 + 4 3.56e-07 cgg agactaataaaacaaa gccctctgca chr1:59077933-59078433 - 30 4.02e-07 CTCTCAGCTC AAATAATTAACTCAAT TGCCTCCTCT chr17:64507284-64507784 - 26 5.79e-07 TGCAGGGGCA TAATAAATCTTAAGAA TGCTGTTCCT chrUn_KI270467v1:2001-25 - 82 6.52e-07 CCA AAATATATATTGTATA CTGTACATAA chr2:191321801-191322301 + 78 6.52e-07 TAGCAAGGGC AGATAAAGAAGTAGAA TTAGCCT chr10:75613714-75614214 + 44 7.33e-07 TTTCTGCACC TAATAAATCATCCAAA CAGGGAACCA chr3:72904222-72904722 - 68 9.22e-07 TGGTGACAGG TACTAAAGAAAAATAA AACCTCTCCT chr8:37302594-37303094 + 29 1.03e-06 CTGGAACATG CAATAAATCATTAGAA TGCCAATAAC chr19:34218197-34218697 - 5 1.16e-06 GCATATCCAG ACATAAATCTAGATAA GTAG chr10:5812474-5812974 + 2 1.44e-06 C AAAAATATAAGTTAAT CAAGCCCTAG chr10:75379153-75379653 - 10 1.44e-06 TATCCATCCG AAGTAAATCATGCTAA TCTCGGGAG chr12:56041744-56042244 + 28 2.21e-06 TTCCATGGAT AAATAAACACTAGGAA CGCATTTCCA chr6:42781870-42782370 + 83 2.21e-06 TTTCAAGGAG AAAAAAAAAACACACA AC chr10:8534001-8534501 - 43 2.45e-06 AAGTGAAACC TAATATAGAAAGTGAA TCTCTTCTTC chr5:83097803-83098303 - 47 2.45e-06 TTAGTTTCAG TGATAAACATAAATTT CACTTCCTCT chr15:77420543-77421043 - 6 3.01e-06 TCCGGTGAGA AGAAAAATGAAATATT TTCCA chr3:17730374-17730874 + 85 3.33e-06 ataaaatcat gagtaaataaatatta chr5:88516249-88516749 + 24 3.68e-06 ATTGCTTAAA AGATAAAGGCTATAAA GTTCCCTAGT chr9:128656666-128657166 + 66 4.06e-06 CCCTGTCCCC AGAAAAAGCACTCTAA GAGTAGGCGC chr3:181328970-181329470 - 76 4.06e-06 AAAGGACTG AAAAAATTATCTCTAA TCCTTTTGGG chr7:133492158-133492658 + 1 4.48e-06 . AAATATAAAAAGAGGA GTAGTTTTTA chr19:40920908-40921408 - 30 4.48e-06 CAGGAGGATA AGATAAACAATCCTGA TTTTTATGAG chr14:51581291-51581791 + 84 4.48e-06 CATGGTGGAG AAACATAGAAAATATT T chr16:3282828-3283328 + 82 4.94e-06 ccggggaagc tgattaacaattcaga ttt chr12:121801299-12180179 - 56 5.43e-06 GCTGAGCGGG TAAGTAAGAAAGATAA AAAGTGCCTT chr10:132335549-13233604 - 60 6.56e-06 GCTACTTAGG TCATAAATCAAATACT TGAAGAGCCC chr14:36835108-36835608 + 2 8.66e-06 G ACATTAACAAATTACT CCCTCTCTCT chr15:67792457-67792957 - 69 9.48e-06 GGGGGGCGGA AAAGAAATATCTCACA GAGCAGATTT chr10:99519952-99520452 - 79 1.04e-05 GCGGTA AAGTAAACACCATTAT CCTAGGTCCA chr7:140396262-140396762 - 11 1.04e-05 ATAAAATGAG AGATATTTACAGATAA ATGCCAAGTA chr1:233241760-233242260 + 50 1.24e-05 actttcctgA AAGTTAATCCCAATAA GTAAGAGGTT chr5:14156540-14157040 + 60 1.24e-05 TTAGTCATCC AAACAAAACAGATGAA GTAATGCTCT chr18:74861099-74861599 - 75 1.24e-05 CTAGCAGACG AAAATAAGCAGATTAT TACAGTGACT chr10:22552774-22553274 + 11 1.47e-05 AACACAAGTC ACATTAATGAAGATGA ATGCCACTTC chr1:159916162-159916662 + 60 1.47e-05 cctgaatgag agataaaggATCTAAT CCCCTGGGAA chr16:15590865-15591365 + 33 1.60e-05 AGCGGAGGCA GAATaaacacttgaaa cagtgagtca chr19:29942531-29943031 - 72 1.60e-05 AAAGGGCTGC AGACAAAGACAACAGA AGCACGTGAC chr10:87845991-87846491 - 51 1.74e-05 TAAACAGCTC AAATAACCAATTAGGA GGAAAAGGAT chr8:37392936-37393436 - 6 1.90e-05 GTAATGCAGC CCATAAATCTAATTTA ATTAC chr12:106074988-10607548 - 83 2.24e-05 GT TGATTAATACTGCTTT CCCATCGAAG chr10:50463966-50464466 - 37 2.24e-05 AGGCCCATTC AGATAATCCAGGATAA TCTCTTGTTT chr6:143755242-143755742 + 23 2.63e-05 TTCCCTTATC AACATAATAAAAAGTT CCTGACAGTT chr16:25049572-25050072 + 72 3.08e-05 aacttgatca tgataaaaaactgtgt taacggttta chr19:39996846-39997346 - 71 3.89e-05 CGCCCGCAAG TGAATAATAACGGTTA AGGTGACTGA chr3:156816584-156817084 - 49 4.87e-05 TGTCAGTTCC CGATATACAACAAACA CCTCAGGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAAATAAHDHWAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35881943-35882443 2.2e-11 53_[+5]_31 chr21:36122963-36123463 2e-10 56_[+5]_28 chr5:160008637-160009137 2.7e-10 38_[+5]_46 chrUn_KI270467v1:2915-34 9.4e-09 84_[-5] chr5:17305910-17306410 9.5e-08 34_[+5]_50 chr8:25998489-25998989 1.9e-07 61_[+5]_23 chr5:124747068-124747568 2.4e-07 48_[-5]_36 chr1:224623819-224624319 3.6e-07 3_[+5]_81 chr1:59077933-59078433 4e-07 29_[-5]_55 chr17:64507284-64507784 5.8e-07 25_[-5]_59 chrUn_KI270467v1:2001-25 6.5e-07 81_[-5]_3 chr2:191321801-191322301 6.5e-07 77_[+5]_7 chr10:75613714-75614214 7.3e-07 43_[+5]_41 chr3:72904222-72904722 9.2e-07 67_[-5]_17 chr8:37302594-37303094 1e-06 28_[+5]_56 chr19:34218197-34218697 1.2e-06 4_[-5]_80 chr10:5812474-5812974 1.4e-06 1_[+5]_83 chr10:75379153-75379653 1.4e-06 9_[-5]_75 chr12:56041744-56042244 2.2e-06 27_[+5]_57 chr6:42781870-42782370 2.2e-06 82_[+5]_2 chr10:8534001-8534501 2.5e-06 42_[-5]_42 chr5:83097803-83098303 2.5e-06 46_[-5]_38 chr15:77420543-77421043 3e-06 5_[-5]_79 chr3:17730374-17730874 3.3e-06 84_[+5] chr5:88516249-88516749 3.7e-06 23_[+5]_61 chr9:128656666-128657166 4.1e-06 65_[+5]_19 chr3:181328970-181329470 4.1e-06 75_[-5]_9 chr7:133492158-133492658 4.5e-06 [+5]_84 chr19:40920908-40921408 4.5e-06 29_[-5]_55 chr14:51581291-51581791 4.5e-06 83_[+5]_1 chr16:3282828-3283328 4.9e-06 81_[+5]_3 chr12:121801299-12180179 5.4e-06 55_[-5]_29 chr10:132335549-13233604 6.6e-06 59_[-5]_25 chr14:36835108-36835608 8.7e-06 1_[+5]_83 chr15:67792457-67792957 9.5e-06 68_[-5]_16 chr10:99519952-99520452 1e-05 78_[-5]_6 chr7:140396262-140396762 1e-05 10_[-5]_74 chr1:233241760-233242260 1.2e-05 49_[+5]_35 chr5:14156540-14157040 1.2e-05 59_[+5]_25 chr18:74861099-74861599 1.2e-05 74_[-5]_10 chr10:22552774-22553274 1.5e-05 10_[+5]_74 chr1:159916162-159916662 1.5e-05 59_[+5]_25 chr16:15590865-15591365 1.6e-05 32_[+5]_52 chr19:29942531-29943031 1.6e-05 71_[-5]_13 chr10:87845991-87846491 1.7e-05 50_[-5]_34 chr8:37392936-37393436 1.9e-05 5_[-5]_79 chr12:106074988-10607548 2.2e-05 82_[-5]_2 chr10:50463966-50464466 2.2e-05 36_[-5]_48 chr6:143755242-143755742 2.6e-05 22_[+5]_62 chr16:25049572-25050072 3.1e-05 71_[+5]_13 chr19:39996846-39997346 3.9e-05 70_[-5]_14 chr3:156816584-156817084 4.9e-05 48_[-5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAAATAAHDHWAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARATAAATAAHDHWAA width=16 seqs=52 chr19:35881943-35882443 ( 54) AAATAAATAAATAAAA 1 chr21:36122963-36123463 ( 57) AAATAAATAAATAATA 1 chr5:160008637-160009137 ( 39) AAATAAATAAATAAAT 1 chrUn_KI270467v1:2915-34 ( 85) AAATAAATATTATATA 1 chr5:17305910-17306410 ( 35) AAACAAATAAATTAGA 1 chr8:25998489-25998989 ( 62) AAAGAAATAACTCAAA 1 chr5:124747068-124747568 ( 49) TAATTAAAAATACTAA 1 chr1:224623819-224624319 ( 4) AGACTAATAAAACAAA 1 chr1:59077933-59078433 ( 30) AAATAATTAACTCAAT 1 chr17:64507284-64507784 ( 26) TAATAAATCTTAAGAA 1 chrUn_KI270467v1:2001-25 ( 82) AAATATATATTGTATA 1 chr2:191321801-191322301 ( 78) AGATAAAGAAGTAGAA 1 chr10:75613714-75614214 ( 44) TAATAAATCATCCAAA 1 chr3:72904222-72904722 ( 68) TACTAAAGAAAAATAA 1 chr8:37302594-37303094 ( 29) CAATAAATCATTAGAA 1 chr19:34218197-34218697 ( 5) ACATAAATCTAGATAA 1 chr10:5812474-5812974 ( 2) AAAAATATAAGTTAAT 1 chr10:75379153-75379653 ( 10) AAGTAAATCATGCTAA 1 chr12:56041744-56042244 ( 28) AAATAAACACTAGGAA 1 chr6:42781870-42782370 ( 83) AAAAAAAAAACACACA 1 chr10:8534001-8534501 ( 43) TAATATAGAAAGTGAA 1 chr5:83097803-83098303 ( 47) TGATAAACATAAATTT 1 chr15:77420543-77421043 ( 6) AGAAAAATGAAATATT 1 chr3:17730374-17730874 ( 85) GAGTAAATAAATATTA 1 chr5:88516249-88516749 ( 24) AGATAAAGGCTATAAA 1 chr9:128656666-128657166 ( 66) AGAAAAAGCACTCTAA 1 chr3:181328970-181329470 ( 76) AAAAAATTATCTCTAA 1 chr7:133492158-133492658 ( 1) AAATATAAAAAGAGGA 1 chr19:40920908-40921408 ( 30) AGATAAACAATCCTGA 1 chr14:51581291-51581791 ( 84) AAACATAGAAAATATT 1 chr16:3282828-3283328 ( 82) TGATTAACAATTCAGA 1 chr12:121801299-12180179 ( 56) TAAGTAAGAAAGATAA 1 chr10:132335549-13233604 ( 60) TCATAAATCAAATACT 1 chr14:36835108-36835608 ( 2) ACATTAACAAATTACT 1 chr15:67792457-67792957 ( 69) AAAGAAATATCTCACA 1 chr10:99519952-99520452 ( 79) AAGTAAACACCATTAT 1 chr7:140396262-140396762 ( 11) AGATATTTACAGATAA 1 chr1:233241760-233242260 ( 50) AAGTTAATCCCAATAA 1 chr5:14156540-14157040 ( 60) AAACAAAACAGATGAA 1 chr18:74861099-74861599 ( 75) AAAATAAGCAGATTAT 1 chr10:22552774-22553274 ( 11) ACATTAATGAAGATGA 1 chr1:159916162-159916662 ( 60) AGATAAAGGATCTAAT 1 chr16:15590865-15591365 ( 33) GAATAAACACTTGAAA 1 chr19:29942531-29943031 ( 72) AGACAAAGACAACAGA 1 chr10:87845991-87846491 ( 51) AAATAACCAATTAGGA 1 chr8:37392936-37393436 ( 6) CCATAAATCTAATTTA 1 chr12:106074988-10607548 ( 83) TGATTAATACTGCTTT 1 chr10:50463966-50464466 ( 37) AGATAATCCAGGATAA 1 chr6:143755242-143755742 ( 23) AACATAATAAAAAGTT 1 chr16:25049572-25050072 ( 72) TGATAAAAAACTGTGT 1 chr19:39996846-39997346 ( 71) TGAATAATAACGGTTA 1 chr3:156816584-156817084 ( 49) CGATATACAACAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAAATAAHDHWAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.1015 E= 3.8e-014 176 -239 -297 22 159 -165 3 -1234 216 -297 -197 -1234 -37 -165 -239 180 199 -1234 -1234 9 213 -1234 -1234 -56 219 -397 -1234 -137 -104 -65 -65 139 180 -39 -197 -1234 180 -97 -1234 -37 103 -51 -165 54 96 -239 -51 80 88 -16 -197 54 116 -1234 -80 96 144 -165 -97 9 188 -1234 -1234 44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAAATAAHDHWAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 52 E= 3.8e-014 0.673077 0.057692 0.038462 0.230769 0.596154 0.096154 0.307692 0.000000 0.884615 0.038462 0.076923 0.000000 0.153846 0.096154 0.057692 0.692308 0.788462 0.000000 0.000000 0.211538 0.865385 0.000000 0.000000 0.134615 0.903846 0.019231 0.000000 0.076923 0.096154 0.192308 0.192308 0.519231 0.692308 0.230769 0.076923 0.000000 0.692308 0.153846 0.000000 0.153846 0.403846 0.211538 0.096154 0.288462 0.384615 0.057692 0.211538 0.346154 0.365385 0.269231 0.076923 0.288462 0.442308 0.000000 0.173077 0.384615 0.538462 0.096154 0.153846 0.211538 0.730769 0.000000 0.000000 0.269231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATAAATAAHDHWAA MEME-5 regular expression -------------------------------------------------------------------------------- [AT][AG]AT[AT]AAT[AC]A[ATC][ATG][ATC][AT][AT][AT] -------------------------------------------------------------------------------- Time 1787.56 secs. ******************************************************************************** ******************************************************************************** MOTIF SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 width = 30 sites = 54 llr = 684 E-value = 5.8e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 Description -------------------------------------------------------------------------------- Simplified A 216:3:7:3521742343533221744431 pos.-specific C 35:21313:::23:122:1132232::21: probability G 542757176476:66447464566166358 matrix T ::2:::1::1111111::1::1::::11:: bits 2.3 2.1 1.9 1.6 Relative 1.4 Entropy 1.2 * * (18.3 bits) 0.9 * * * * * ** * 0.7 ** ****** ** * * *** * 0.5 * ********* *** ***** ***** ** 0.2 ****************************** 0.0 ------------------------------ Multilevel GCAGGGAGGAGGAGGGAGAGGGGGAGGAGG consensus CGTCAC CAGACCAAAGAGAA ACCAAGA sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr1:234723900-234724400 + 32 7.82e-13 agagagaaat ggagggagagggagggaggaagggaggagg gaggtggaga chr17:48728611-48729111 - 68 1.12e-10 GAG ACAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAAAGAGAG chr20:44885348-44885848 - 16 1.61e-10 GGCGCAGACG GAAGGGAGGAGGAAGAAGAGCGAAAGGCAG GGTTGCAGGG chr21:32771748-32772248 + 5 3.83e-10 cgag agagagagagagagagagagcgagagagag agagagagCC chr14:103520882-10352138 - 61 4.53e-10 GGGGCCCCTC GCGGCGAGGAGGAGGAGGAGGAGGAGGGAG GGGCCGGCCG chr1:155244580-155245080 + 5 8.70e-10 AGCC Ggagagagagagagagcgagagcgagagag cgagcgagag chr12:2812649-2813149 + 47 8.70e-10 CTGGATCTGT GCAGGGACGGGGCAAGGGAAGTGGAAGAGG CCGCCCGAGC chr17:68511727-68512227 + 40 1.39e-09 CGTGGGTCGG CCAGGGAGGGGGTGGAAAGGAGGGAGAAAA GGCAGAGGCG chr12:106774216-10677471 + 3 4.57e-09 TC CGAGGGAGGGAGAGGCAGGAGAGCAAGCAG GGCCTTGGGC chr10:72354649-72355149 + 69 6.96e-09 GAACGCGGAA CCAGGGAGGGGGAGGCCGGGCGAGCGAAGG GC chr20:58650951-58651451 + 47 7.98e-09 GGGGCACTCG CGAGGGACGGACAGGAAGAGGGCCAGGGGG GAACGCCAGA chr1:200739054-200739554 - 19 1.05e-08 CCGGGTGGGC GGAGGGACGAGCAGGACGAGGGGGAAGCGC GGGGCGAGCT chr1:183471815-183472315 + 13 2.29e-08 TTCCGGTGGG GAAGAGTGGAGGCGTGCAAAAAGGAAGAGG GAAATCGGCA chr19:52189757-52190257 - 46 3.34e-08 GGGGGGCAAT GCTGGGAGAAGAAGGAAGGGCGGGCGTGGG GGCGCCCGAG chr22:39502198-39502698 + 43 1.52e-07 CCTGCGGGTG AGTGAGAGAAGGAATGAGGGCCGCCGGCGG CTGGGCGGCG chr18:5237676-5238176 - 19 1.69e-07 AGTCGGCGAG CGGGAGTGAAAGAAGAAAAGCTAGAGAGCG AAGGCAAAGC chr17:45132599-45133099 - 35 1.89e-07 CTGCGGCGCG ACGGGGACGCGGAAGGGAAGGAGGAGGGGG TCCTGCGTCA chr3:41961655-41962155 + 30 1.89e-07 TACGGGGTCC ACTGGCAGAAGGAGAGAGGGCGGCCAGGCG CCACCACCCA chr13:20567103-20567603 - 41 2.10e-07 CCCGGGGCCG ACAGGGGCGGGCAGGAGACGGGCGAAGAGG CCCTCGGCGG chr1:155000848-155001348 + 69 3.54e-07 TGAGTCACGG CCCGGCGCGGAgagggagagagggagaaag ag chr8:94553414-94553914 + 38 3.93e-07 CCCCTAGAAC GCAGAGGGGGGGCAGAGGGAAGTGAGATGG GGACTACGGG chr19:28425257-28425757 + 17 4.34e-07 TAATAAACAG GGTGAGAGAAAGAACTGGAAACGCGAGAGG GGTTGGAGAT chr1:53220216-53220716 - 29 4.80e-07 GCGAGTGGGT GCGCGCTGAAGGAGCAGGAGGCAGAAGGAG TGTCTCCCTG chr5:177311902-177312402 - 27 5.85e-07 AATGAGCCGG CGTGGGTGGATGAGTGAGGCGGGCAAGAAG CAGCACCGGT chr6:85642951-85643451 - 67 5.85e-07 GGAG GGAGTGAGGGAGCGTGCGAGCCAGAAGGGG AAAGGCGGCC chr19:1407199-1407699 + 23 6.45e-07 ACGCCAGGAG CCTCCGAGGAGAAAGGAAAACGCGCGACGG CCCCGACTGC chr1:1000549-1001049 + 3 8.61e-07 CG GGAGGGCGGAGTCAGCGGACGGCGAAGGGG CGCACGGGTg chr12:48818250-48818750 - 2 9.47e-07 GAGGCTGCGG GCAGGGCGGATCCAGGCAGGGAGGAGGCGG G chr6:31462759-31463259 - 69 9.47e-07 GA CCTGACACAGGTTGGGAAAGGTGGAAGAGA GAGAGCGGAG chr7:105013776-105014276 - 39 1.04e-06 GCCTCTCCGC GGAGGCTCGAAGATAGCAAACTGGAGGCGG TGAGGGGGAC chr19:39031582-39032082 - 17 1.04e-06 GGATGCTGGG CCACAGTGGGAGCGGTAGCGGGGCCGGAGG GGCGGGGCCG chr17:60525848-60526348 + 68 1.04e-06 GGCAGCGGAC GCAGGCCCGAGTAAAAAGTGGGACAGAAAA CAG chr21:28992711-28993211 - 41 1.14e-06 GGATGGTCAG GGACACAGCGGGAGGCGGGAGCGGAAGTGG GGCAGCAAAT chr12:12839860-12840360 - 29 1.14e-06 GGACTCTGGA GAACACAGTAGGAGAAGGGGCAGGAAATGA TTACATGGCT chr9:15510917-15511417 + 9 1.25e-06 TAACAGGT GCATGCAGATGGAGAGGAAGACGCAAGCGA AGAAGAAAGG chr6:109382347-109382847 + 28 1.37e-06 CGGGAATCCT ACGGGGGGAAGCAGGGGAGTCGGGAGGAAG CCGAAGGAAC chr19:38336399-38336899 + 3 1.50e-06 CC CGAGCGAGGAGAAAGCGGCGATACCAAGAG AAGTGCGAGG chr17:59209694-59210194 + 47 1.96e-06 AGGCGGAACT CAAGTGACGGGAAAGCAGGAACTGAAGAAG CGGAGGAAGG chr19:38336598-38337098 + 29 1.96e-06 AAAGTTAAAG GAAGAGACGTGGAGGCGGCGGGGCGGAACG AGGCGGAGGA chr1:46132560-46133060 - 63 2.77e-06 AGAGCGGT GGGGAGACGTGAAAGTCGAGATGGAGAGCA GCTTTTTGAA chr17:57849899-57850399 + 45 3.01e-06 GGAGAGCGGC GCAGGCAGAAGCAAGTGATAGGCCGAACGG GCGCGCTCCG chr4:77075916-77076416 + 66 3.01e-06 TGGGGAAGTC GTTGGCACTAGGATGGAAGGAGGGAGGACG TTTTC chr7:73522299-73522799 + 29 3.01e-06 TAAAAGTGGG GGACAGCGGGGGATGGAGAGGACGAGAACT CAAAGAGGTC chr14:103520682-10352118 + 33 3.56e-06 GGTAGAATCC CAGCGGCGGAGGAGTGAGAAAAGAAAACAA AGAGCTCCAG chr6:17706703-17707203 + 62 3.87e-06 GCATCATCAT GCTGCGACGAGCTGATAGGCAAAGAGGAAG GGCTGGTCG chr6:26596736-26597236 + 51 3.87e-06 GTCAACATGG AGGCAGAGGAATCGGAGAAGGCCGCAACGG AGCAAGAGCC chr17:59619517-59620017 - 7 5.35e-06 CTTCCTGACG CCACATGGGGGGAAACAGAGGAACCGGAGG GACTAC chr3:52197686-52198186 + 22 7.31e-06 GGAGGCAGCA CGAGGGTGCAGGATGAGGTCGGGAAAAGAG ACCTCGTCCG chr5:176388745-176389245 + 62 7.89e-06 CACAAGGAGA GGACAGTGATGTCGGAGGGAAGGAAGTAGA GAAGGACCA chr3:9397295-9397795 + 39 9.18e-06 GCGGGGCGGT GGGCGGAGAGGCCAATGGCGCGGCGGGAGG GGGCGTGTCC chr10:62268465-62268965 + 8 1.42e-05 GCCCGCC CCTGGCAGGAGCCGCAGAGGACGCCAACCG CCCGGCCGTA chr19:3573547-3574047 + 7 1.88e-05 AAGAGC GCGGCGAGGGTCCACGCGCGGGCGAGAAGG GGTCCCACGA chr19:47256293-47256793 + 62 4.12e-05 CGGGAGCTGC GGTCGCAGAGGCCGACGGAGCCGGAGTCGC GGACGCCGC chr7:100895868-100896368 + 64 4.39e-05 GGCGGAGTAG ACACCCACGTgacagacagacggacagaag cccgtgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:234723900-234724400 7.8e-13 31_[+6]_39 chr17:48728611-48729111 1.1e-10 67_[-6]_3 chr20:44885348-44885848 1.6e-10 15_[-6]_55 chr21:32771748-32772248 3.8e-10 4_[+6]_66 chr14:103520882-10352138 4.5e-10 60_[-6]_10 chr1:155244580-155245080 8.7e-10 4_[+6]_66 chr12:2812649-2813149 8.7e-10 46_[+6]_24 chr17:68511727-68512227 1.4e-09 39_[+6]_31 chr12:106774216-10677471 4.6e-09 2_[+6]_68 chr10:72354649-72355149 7e-09 68_[+6]_2 chr20:58650951-58651451 8e-09 46_[+6]_24 chr1:200739054-200739554 1e-08 18_[-6]_52 chr1:183471815-183472315 2.3e-08 12_[+6]_58 chr19:52189757-52190257 3.3e-08 45_[-6]_25 chr22:39502198-39502698 1.5e-07 42_[+6]_28 chr18:5237676-5238176 1.7e-07 18_[-6]_52 chr17:45132599-45133099 1.9e-07 34_[-6]_36 chr3:41961655-41962155 1.9e-07 29_[+6]_41 chr13:20567103-20567603 2.1e-07 40_[-6]_30 chr1:155000848-155001348 3.5e-07 68_[+6]_2 chr8:94553414-94553914 3.9e-07 37_[+6]_33 chr19:28425257-28425757 4.3e-07 16_[+6]_54 chr1:53220216-53220716 4.8e-07 28_[-6]_42 chr5:177311902-177312402 5.9e-07 26_[-6]_44 chr6:85642951-85643451 5.9e-07 66_[-6]_4 chr19:1407199-1407699 6.5e-07 22_[+6]_48 chr1:1000549-1001049 8.6e-07 2_[+6]_68 chr12:48818250-48818750 9.5e-07 1_[-6]_69 chr6:31462759-31463259 9.5e-07 68_[-6]_2 chr7:105013776-105014276 1e-06 38_[-6]_32 chr19:39031582-39032082 1e-06 16_[-6]_54 chr17:60525848-60526348 1e-06 67_[+6]_3 chr21:28992711-28993211 1.1e-06 40_[-6]_30 chr12:12839860-12840360 1.1e-06 28_[-6]_42 chr9:15510917-15511417 1.3e-06 8_[+6]_62 chr6:109382347-109382847 1.4e-06 27_[+6]_43 chr19:38336399-38336899 1.5e-06 2_[+6]_68 chr17:59209694-59210194 2e-06 46_[+6]_24 chr19:38336598-38337098 2e-06 28_[+6]_42 chr1:46132560-46133060 2.8e-06 62_[-6]_8 chr17:57849899-57850399 3e-06 44_[+6]_26 chr4:77075916-77076416 3e-06 65_[+6]_5 chr7:73522299-73522799 3e-06 28_[+6]_42 chr14:103520682-10352118 3.6e-06 32_[+6]_38 chr6:17706703-17707203 3.9e-06 61_[+6]_9 chr6:26596736-26597236 3.9e-06 50_[+6]_20 chr17:59619517-59620017 5.3e-06 6_[-6]_64 chr3:52197686-52198186 7.3e-06 21_[+6]_49 chr5:176388745-176389245 7.9e-06 61_[+6]_9 chr3:9397295-9397795 9.2e-06 38_[+6]_32 chr10:62268465-62268965 1.4e-05 7_[+6]_63 chr19:3573547-3574047 1.9e-05 6_[+6]_64 chr19:47256293-47256793 4.1e-05 61_[+6]_9 chr7:100895868-100896368 4.4e-05 63_[+6]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSAGRGAGRRGGARGRRGRGVGGGARRVRG width=30 seqs=54 chr1:234723900-234724400 ( 32) GGAGGGAGAGGGAGGGAGGAAGGGAGGAGG 1 chr17:48728611-48729111 ( 68) ACAGAGAGAGAGAGAGAGAGAGAGAGAGAG 1 chr20:44885348-44885848 ( 16) GAAGGGAGGAGGAAGAAGAGCGAAAGGCAG 1 chr21:32771748-32772248 ( 5) AGAGAGAGAGAGAGAGAGAGCGAGAGAGAG 1 chr14:103520882-10352138 ( 61) GCGGCGAGGAGGAGGAGGAGGAGGAGGGAG 1 chr1:155244580-155245080 ( 5) GGAGAGAGAGAGAGAGCGAGAGCGAGAGAG 1 chr12:2812649-2813149 ( 47) GCAGGGACGGGGCAAGGGAAGTGGAAGAGG 1 chr17:68511727-68512227 ( 40) CCAGGGAGGGGGTGGAAAGGAGGGAGAAAA 1 chr12:106774216-10677471 ( 3) CGAGGGAGGGAGAGGCAGGAGAGCAAGCAG 1 chr10:72354649-72355149 ( 69) CCAGGGAGGGGGAGGCCGGGCGAGCGAAGG 1 chr20:58650951-58651451 ( 47) CGAGGGACGGACAGGAAGAGGGCCAGGGGG 1 chr1:200739054-200739554 ( 19) GGAGGGACGAGCAGGACGAGGGGGAAGCGC 1 chr1:183471815-183472315 ( 13) GAAGAGTGGAGGCGTGCAAAAAGGAAGAGG 1 chr19:52189757-52190257 ( 46) GCTGGGAGAAGAAGGAAGGGCGGGCGTGGG 1 chr22:39502198-39502698 ( 43) AGTGAGAGAAGGAATGAGGGCCGCCGGCGG 1 chr18:5237676-5238176 ( 19) CGGGAGTGAAAGAAGAAAAGCTAGAGAGCG 1 chr17:45132599-45133099 ( 35) ACGGGGACGCGGAAGGGAAGGAGGAGGGGG 1 chr3:41961655-41962155 ( 30) ACTGGCAGAAGGAGAGAGGGCGGCCAGGCG 1 chr13:20567103-20567603 ( 41) ACAGGGGCGGGCAGGAGACGGGCGAAGAGG 1 chr1:155000848-155001348 ( 69) CCCGGCGCGGAGAGGGAGAGAGGGAGAAAG 1 chr8:94553414-94553914 ( 38) GCAGAGGGGGGGCAGAGGGAAGTGAGATGG 1 chr19:28425257-28425757 ( 17) GGTGAGAGAAAGAACTGGAAACGCGAGAGG 1 chr1:53220216-53220716 ( 29) GCGCGCTGAAGGAGCAGGAGGCAGAAGGAG 1 chr5:177311902-177312402 ( 27) CGTGGGTGGATGAGTGAGGCGGGCAAGAAG 1 chr6:85642951-85643451 ( 67) GGAGTGAGGGAGCGTGCGAGCCAGAAGGGG 1 chr19:1407199-1407699 ( 23) CCTCCGAGGAGAAAGGAAAACGCGCGACGG 1 chr1:1000549-1001049 ( 3) GGAGGGCGGAGTCAGCGGACGGCGAAGGGG 1 chr12:48818250-48818750 ( 2) GCAGGGCGGATCCAGGCAGGGAGGAGGCGG 1 chr6:31462759-31463259 ( 69) CCTGACACAGGTTGGGAAAGGTGGAAGAGA 1 chr7:105013776-105014276 ( 39) GGAGGCTCGAAGATAGCAAACTGGAGGCGG 1 chr19:39031582-39032082 ( 17) CCACAGTGGGAGCGGTAGCGGGGCCGGAGG 1 chr17:60525848-60526348 ( 68) GCAGGCCCGAGTAAAAAGTGGGACAGAAAA 1 chr21:28992711-28993211 ( 41) GGACACAGCGGGAGGCGGGAGCGGAAGTGG 1 chr12:12839860-12840360 ( 29) GAACACAGTAGGAGAAGGGGCAGGAAATGA 1 chr9:15510917-15511417 ( 9) GCATGCAGATGGAGAGGAAGACGCAAGCGA 1 chr6:109382347-109382847 ( 28) ACGGGGGGAAGCAGGGGAGTCGGGAGGAAG 1 chr19:38336399-38336899 ( 3) CGAGCGAGGAGAAAGCGGCGATACCAAGAG 1 chr17:59209694-59210194 ( 47) CAAGTGACGGGAAAGCAGGAACTGAAGAAG 1 chr19:38336598-38337098 ( 29) GAAGAGACGTGGAGGCGGCGGGGCGGAACG 1 chr1:46132560-46133060 ( 63) GGGGAGACGTGAAAGTCGAGATGGAGAGCA 1 chr17:57849899-57850399 ( 45) GCAGGCAGAAGCAAGTGATAGGCCGAACGG 1 chr4:77075916-77076416 ( 66) GTTGGCACTAGGATGGAAGGAGGGAGGACG 1 chr7:73522299-73522799 ( 29) GGACAGCGGGGGATGGAGAGGACGAGAACT 1 chr14:103520682-10352118 ( 33) CAGCGGCGGAGGAGTGAGAAAAGAAAACAA 1 chr6:17706703-17707203 ( 62) GCTGCGACGAGCTGATAGGCAAAGAGGAAG 1 chr6:26596736-26597236 ( 51) AGGCAGAGGAATCGGAGAAGGCCGCAACGG 1 chr17:59619517-59620017 ( 7) CCACATGGGGGGAAACAGAGGAACCGGAGG 1 chr3:52197686-52198186 ( 22) CGAGGGTGCAGGATGAGGTCGGGAAAAGAG 1 chr5:176388745-176389245 ( 62) GGACAGTGATGTCGGAGGGAAGGAAGTAGA 1 chr3:9397295-9397795 ( 39) GGGCGGAGAGGCCAATGGCGCGGCGGGAGG 1 chr10:62268465-62268965 ( 8) CCTGGCAGGAGCCGCAGAGGACGCCAACCG 1 chr19:3573547-3574047 ( 7) GCGGCGAGGGTCCACGCGCGGGCGAGAAGG 1 chr19:47256293-47256793 ( 62) GGTCGCAGAGGCCGACGGAGCCGGAGTCGC 1 chr7:100895868-100896368 ( 64) ACACCCACGTGACAGACAGACGGACAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.1915 E= 5.8e-027 -25 -3 83 -1240 -83 62 43 -342 158 -402 -70 4 -1240 -33 130 -342 75 -144 78 -242 -1240 -22 126 -342 175 -170 -170 -42 -1240 -12 126 -1240 67 -302 102 -242 128 -402 43 -110 17 -1240 126 -183 -83 -57 97 -110 179 -22 -1240 -183 83 -1240 93 -142 28 -203 97 -110 67 -86 43 -83 110 -70 37 -1240 58 -1240 122 -1240 128 -144 22 -183 39 -203 110 -342 67 -12 43 -1240 -10 -70 78 -83 4 -86 97 -242 -110 -12 106 -1240 187 -57 -203 -1240 110 -1240 93 -1240 97 -1240 88 -183 110 -33 -12 -183 75 -122 83 -1240 -42 -302 140 -342 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 54 E= 5.8e-027 0.166667 0.296296 0.537037 0.000000 0.111111 0.462963 0.407407 0.018519 0.592593 0.018519 0.185185 0.203704 0.000000 0.240741 0.740741 0.018519 0.333333 0.111111 0.518519 0.037037 0.000000 0.259259 0.722222 0.018519 0.666667 0.092593 0.092593 0.148148 0.000000 0.277778 0.722222 0.000000 0.314815 0.037037 0.611111 0.037037 0.481481 0.018519 0.407407 0.092593 0.222222 0.000000 0.722222 0.055556 0.111111 0.203704 0.592593 0.092593 0.685185 0.259259 0.000000 0.055556 0.351852 0.000000 0.574074 0.074074 0.240741 0.074074 0.592593 0.092593 0.314815 0.166667 0.407407 0.111111 0.425926 0.185185 0.388889 0.000000 0.296296 0.000000 0.703704 0.000000 0.481481 0.111111 0.351852 0.055556 0.259259 0.074074 0.648148 0.018519 0.314815 0.277778 0.407407 0.000000 0.185185 0.185185 0.518519 0.111111 0.203704 0.166667 0.592593 0.037037 0.092593 0.277778 0.629630 0.000000 0.722222 0.203704 0.074074 0.000000 0.425926 0.000000 0.574074 0.000000 0.388889 0.000000 0.555556 0.055556 0.425926 0.240741 0.277778 0.055556 0.333333 0.129630 0.537037 0.000000 0.148148 0.037037 0.796296 0.018519 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSAGRGAGRRGGARGRRGRGVGGGARRVRG MEME-6 regular expression -------------------------------------------------------------------------------- [GC][CG][AT][GC][GA][GC]A[GC][GA][AG][GA][GC][AC][GA][GA][GA][AG][GA][AG][GA][GAC]G[GA][GC][AC][GA][GA][AGC][GA]G -------------------------------------------------------------------------------- Time 2099.96 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 width = 31 sites = 4 llr = 137 E-value = 1.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 Description -------------------------------------------------------------------------------- Simplified A :::3:3:::8::::3::8a:::3a::a:::3 pos.-specific C 8:::::a3a:3:8a:3:3::aa8::a:8:5: probability G :aa:a8::::5a3::8::::::::a:::::: matrix T 3::8:::8:33:::8:a::a:::::::3a58 bits 2.3 * ** * * * 2.1 * ** * * * 1.9 * ** * * * 1.6 **** * ** * ** * **** **** * * Relative 1.4 **** **** * ** ****** **** * * Entropy 1.2 ********** * ** ************* * (49.4 bits) 0.9 ********** ******************** 0.7 ********** ******************** 0.5 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CGGTGGCTCAGGCCTGTAATCCCAGCACTCT consensus T A A C TC G AC C A T TA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr17:46101212-46101712 + 67 3.14e-19 CAgctgggca cggtggctcaggcctgtaatcccagcacttt ggg chr14:39170364-39170864 + 9 2.45e-18 Cccgggcg cggtggctcacgcctgtaatcccagcacttt gggtggcgga chr18:3409079-3409579 + 50 3.32e-17 CTgccaggca cggtgactcatgcctgtaatcccagcattct gggaggccaa chr19:4455640-4456140 + 46 4.37e-14 tcaccctcct tggaggccctgggcactcatccaagcactca tcgcctgagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:46101212-46101712 3.1e-19 66_[+7]_3 chr14:39170364-39170864 2.4e-18 8_[+7]_61 chr18:3409079-3409579 3.3e-17 49_[+7]_20 chr19:4455640-4456140 4.4e-14 45_[+7]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGTGGCTCABGCCTGTAATCCCAGCACTYT width=31 seqs=4 chr17:46101212-46101712 ( 67) CGGTGGCTCAGGCCTGTAATCCCAGCACTTT 1 chr14:39170364-39170864 ( 9) CGGTGGCTCACGCCTGTAATCCCAGCACTTT 1 chr18:3409079-3409579 ( 50) CGGTGACTCATGCCTGTAATCCCAGCATTCT 1 chr19:4455640-4456140 ( 46) TGGAGGCCCTGGGCACTCATCCAAGCACTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 13.358 E= 1.8e+000 -865 131 -865 33 -865 -865 173 -865 -865 -865 173 -865 33 -865 -865 192 -865 -865 173 -865 33 -865 131 -865 -865 173 -865 -865 -865 -27 -865 192 -865 173 -865 -865 192 -865 -865 33 -865 -27 73 33 -865 -865 173 -865 -865 131 -27 -865 -865 173 -865 -865 33 -865 -865 192 -865 -27 131 -865 -865 -865 -865 233 192 -27 -865 -865 233 -865 -865 -865 -865 -865 -865 233 -865 173 -865 -865 -865 173 -865 -865 33 131 -865 -865 233 -865 -865 -865 -865 -865 173 -865 -865 173 -865 -865 233 -865 -865 -865 -865 131 -865 33 -865 -865 -865 233 -865 73 -865 133 33 -865 -865 192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 4 E= 1.8e+000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGGCTCABGCCTGTAATCCCAGCACTYT MEME-7 regular expression -------------------------------------------------------------------------------- [CT]GG[TA]G[GA]C[TC]C[AT][GCT]G[CG]C[TA][GC]T[AC]ATCC[CA]AGCA[CT]T[CT][TA] -------------------------------------------------------------------------------- Time 2400.51 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 width = 37 sites = 4 llr = 149 E-value = 6.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 Description -------------------------------------------------------------------------------- Simplified A a:::a::::8:3::333::a33:38a5a53a85:3:: pos.-specific C :a:5::a:::a88335::::883:::::::::53:aa probability G :::5:a::a::::55388a:::883:5:38:3::::: matrix T ::a::::a:3::33:::3::::::::::3::::88:: bits 2.3 * * * * * * * * 2.1 * * * * * * * * 1.9 * * * * * * * * 1.6 *** ******* ** * * * *** Relative 1.4 *** ******* ** ** * ** **** Entropy 1.2 *** ********* ****** *** * *** **** (53.8 bits) 0.9 *** ********* ************ ******** 0.7 ************* ********************* 0.5 ************************************* 0.2 ************************************* 0.0 ------------------------------------- Multilevel ACTCAGCTGACCCGGCGGGACCGGAAAAAGAAATTCC consensus G T ATCAAAT AACAG G GA GCCA sequence TCG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------- chr15:75335784-75336284 + 47 3.98e-22 GTGATCGTCG ACTCAGCTGACCCTGCGGGACCGGAAAAAGAAATTCC CGGGCCCTGG chr15:74099969-74100469 - 62 3.06e-21 CG ACTCAGCTGACCTGGCGGGACCGGAAAAAGAAATTCC CGGGCCCTGG chr16:4253860-4254360 + 10 2.58e-16 CCTATGAGA ACTGAGCTGTCCCGCAGGGACCGAGAGAGGAGCCTCC GCTTTCGCAG chr3:17730374-17730874 + 16 2.82e-16 tctaaccccc actgagctgacaccagatgaaacgaagataaactacc ctcaatgagt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:75335784-75336284 4e-22 46_[+8]_17 chr15:74099969-74100469 3.1e-21 61_[-8]_2 chr16:4253860-4254360 2.6e-16 9_[+8]_54 chr3:17730374-17730874 2.8e-16 15_[+8]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC width=37 seqs=4 chr15:75335784-75336284 ( 47) ACTCAGCTGACCCTGCGGGACCGGAAAAAGAAATTCC 1 chr15:74099969-74100469 ( 62) ACTCAGCTGACCTGGCGGGACCGGAAAAAGAAATTCC 1 chr16:4253860-4254360 ( 10) ACTGAGCTGTCCCGCAGGGACCGAGAGAGGAGCCTCC 1 chr3:17730374-17730874 ( 16) ACTGAGCTGACACCAGATGAAACGAAGATAAACTACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 37 n= 38400 bayes= 13.9657 E= 6.2e+001 233 -865 -865 -865 -865 173 -865 -865 -865 -865 -865 233 -865 73 73 -865 233 -865 -865 -865 -865 -865 173 -865 -865 173 -865 -865 -865 -865 -865 233 -865 -865 173 -865 192 -865 -865 33 -865 173 -865 -865 33 131 -865 -865 -865 131 -865 33 -865 -27 73 33 33 -27 73 -865 33 73 -27 -865 33 -865 131 -865 -865 -865 131 33 -865 -865 173 -865 233 -865 -865 -865 33 131 -865 -865 33 131 -865 -865 -865 -27 131 -865 33 -865 131 -865 192 -865 -27 -865 233 -865 -865 -865 133 -865 73 -865 233 -865 -865 -865 133 -865 -27 33 33 -865 131 -865 233 -865 -865 -865 192 -865 -27 -865 133 73 -865 -865 -865 -27 -865 192 33 -865 -865 192 -865 173 -865 -865 -865 173 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 37 nsites= 4 E= 6.2e+001 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.250000 0.500000 0.250000 0.250000 0.250000 0.500000 0.000000 0.250000 0.500000 0.250000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.250000 0.250000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.000000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTSAGCTGACCCBVVGGGACCGGAARADGAAMTTCC MEME-8 regular expression -------------------------------------------------------------------------------- ACT[CG]AGCTG[AT]C[CA][CT][GCT][GAC][CAG][GA][GT]GA[CA][CA][GC][GA][AG]A[AG]A[AGT][GA]A[AG][AC][TC][TA]CC -------------------------------------------------------------------------------- Time 2699.27 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 width = 27 sites = 3 llr = 105 E-value = 7.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::aa::::::a::::a::::a:::a: pos.-specific C :a:::a:7a3::aa:a:::::::aa:a probability G ::a::::::3a::::::7a:a:::::: matrix T a:::::a3:3::::a::3:a::a:::: bits 2.3 * ** * * * * * ** * 2.1 * ** * * * * * ** * 1.9 * ** * * * * * ** * 1.6 ******* * ******* ********* Relative 1.4 ******* * ******* ********* Entropy 1.2 ******* * ******* ********* (50.5 bits) 0.9 ********* ***************** 0.7 ********* ***************** 0.5 ********* ***************** 0.2 *************************** 0.0 --------------------------- Multilevel TCGAACTCCCGACCTCAGGTGATCCAC consensus T G T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr17:8127444-8127944 - 1 5.76e-17 CAGGCTGGTC TCGAACTCCTGACCTCAGGTGATCCAC chr1:28235297-28235797 + 61 3.09e-16 caggctggtc tcgaactccggacctcaggtgatccac ccacttcggc chr14:39170364-39170864 - 55 6.39e-16 TCAGGCTGGT TCGAACTTCCGACCTCATGTGATCCAC CCGCCTCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:8127444-8127944 5.8e-17 [-9]_73 chr1:28235297-28235797 3.1e-16 60_[+9]_13 chr14:39170364-39170864 6.4e-16 54_[-9]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACTYCBGACCTCAKGTGATCCAC width=27 seqs=3 chr17:8127444-8127944 ( 1) TCGAACTCCTGACCTCAGGTGATCCAC 1 chr1:28235297-28235797 ( 61) TCGAACTCCGGACCTCAGGTGATCCAC 1 chr14:39170364-39170864 ( 55) TCGAACTTCCGACCTCATGTGATCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 13.5121 E= 7.3e+001 -823 -823 -823 233 -823 172 -823 -823 -823 -823 172 -823 233 -823 -823 -823 233 -823 -823 -823 -823 172 -823 -823 -823 -823 -823 233 -823 114 -823 75 -823 172 -823 -823 -823 14 14 75 -823 -823 172 -823 233 -823 -823 -823 -823 172 -823 -823 -823 172 -823 -823 -823 -823 -823 233 -823 172 -823 -823 233 -823 -823 -823 -823 -823 114 75 -823 -823 172 -823 -823 -823 -823 233 -823 -823 172 -823 233 -823 -823 -823 -823 -823 -823 233 -823 172 -823 -823 -823 172 -823 -823 233 -823 -823 -823 -823 172 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 3 E= 7.3e+001 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACTYCBGACCTCAKGTGATCCAC MEME-9 regular expression -------------------------------------------------------------------------------- TCGAACT[CT]C[CGT]GACCTCA[GT]GTGATCCAC -------------------------------------------------------------------------------- Time 2993.14 secs. ******************************************************************************** ******************************************************************************** MOTIF GVAGARGVGGMG MEME-10 width = 12 sites = 48 llr = 474 E-value = 2.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVAGARGVGGMG MEME-10 Description -------------------------------------------------------------------------------- Simplified A :38:76:3::51 pos.-specific C :3::3::4::5: probability G a43a:4a38a:9 matrix T ::::::::2::: bits 2.3 2.1 1.9 1.6 * * * * Relative 1.4 * ** * * * Entropy 1.2 * ** * ** * (14.3 bits) 0.9 * ***** **** 0.7 * ***** **** 0.5 * ********** 0.2 ************ 0.0 ------------ Multilevel GGAGAAGCGGCG consensus CG CG AT A sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGARGVGGMG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:59209694-59210194 + 27 6.97e-08 AACTAGGAGA GGAGAAGAGGAG GCGGAACTCA chr12:132828700-13282920 - 51 2.22e-07 GTGGCCACTT GAAGAAGAGGAG GACGTTCTCT chr19:43754582-43755082 + 80 2.22e-07 TGGGCCGAAG GAAGAAGAGGAG GAGGATGTA chr6:30066969-30067469 + 85 2.22e-07 CCCCAGGGGT GGAGAAGCGGAG GCCC chr2:55617407-55617907 - 86 8.06e-07 CGT GCAGAAGCGGAG GTGCTGCTCA chr12:6753070-6753570 + 29 1.36e-06 CCCTGGGCAC GAAGAAGGGGAG CTCATTAGTA chr19:2096193-2096693 + 14 1.36e-06 GGGGCTCCGC GCAGAAGCGGCG TGCAGGGGTC chr2:86623716-86624216 + 67 2.01e-06 AGGGGCGGGA GGAGAGGCGGAG CCGCAGCGTG chr1:22052442-22052942 + 89 2.32e-06 ACGCCCCGGT GGAGAAGCTGAG chr22:39532648-39533148 + 51 2.32e-06 CACTTGAGCG GAAGAAGGGGCG GAAACTGGAG chr22:39399547-39400047 + 64 2.64e-06 AGATGGCGGC GCAGAGGAGGAG CTTGCTGCAG chr9:121201644-121202144 + 89 3.43e-06 AAAAGAAGGG GGAGAAGATGCG chr6:111086997-111087497 - 48 3.43e-06 CAAAGCATGA GCAGAAGGGGCG CGTCTCCTAG chr19:1652603-1653103 + 11 4.31e-06 GCGGGGACGC GCAGAGGAGGCG GTCGGGCCAC chr6:113858668-113859168 + 6 7.76e-06 GCGTG GAAGCAGAGGCG AGACCTCAGA chr19:5436604-5437104 - 13 9.49e-06 CAATGGGGAC GCAGAGGGGGCG CATTACCTCA chr12:27780624-27781124 + 52 1.06e-05 TCAGCCTGAA GCAGAGGCTGAG GGAGGCCCGG chr12:48818250-48818750 - 33 1.06e-05 AGGAAGGGGA GGAGAGGCTGCG GGCAGGGCGG chr3:38346639-38347139 - 48 1.06e-05 CCCAGCCCAG GCAGCAGCGGCG AGGGGCGTGC chr19:13774252-13774752 - 1 1.06e-05 CCGGCACGCA GCGGAAGAGGCG chr17:45431497-45431997 + 33 1.06e-05 GGGCGAGGCC GGAGAGGCTGCG CGGAACAGGA chr8:11201431-11201931 - 19 1.06e-05 CAACGGAAGA GGGGAAGGGGAG CCCTGGCGGG chr3:48429817-48430317 - 54 1.25e-05 GGGAGTAGTG GGAGCAGGGGCG GTGAGCAGGG chr12:49060582-49061082 + 5 1.25e-05 GAGC GGAGCGGCGGAG GGATCCCGCC chr11:65569915-65570415 + 8 1.41e-05 AACCCCA GGGGAGGCGGAG GCCAGCGGGG chr1:151189767-151190267 - 71 1.51e-05 GGAGGCAGAG GAGGAAGATGAG TTCTACCAGA chr16:4538674-4539174 + 4 1.51e-05 GTG GGAGCGGAGGCG ATTTGGCCTA chr7:100895868-100896368 + 49 1.72e-05 CCAAAGACCT GCAGCGGCGGAG TAGACACCCA chr3:13479782-13480282 - 51 1.93e-05 CCCCGGCCTC GCGGAAGGGGCG CGACCACCGT chr12:110048407-11004890 - 27 1.93e-05 CAAATCTTAG GCAGAAGCGGAA CTTAGACCAG chr11:65083940-65084440 + 25 2.07e-05 ACCTCTAGCG GCAGCGGAGGCG TGGCCCAGGG chr14:23567501-23568001 - 59 2.26e-05 GAAGCGCTGG GGGGCAGAGGAG CGGAGTTGAG chr16:30571823-30572323 + 39 2.26e-05 GGGTGTCTGG GAAGTAGAGGAG AGGCTTCTTG chr16:30534659-30535159 - 67 2.57e-05 AACTGGGCCT GGAGCGGGGGCG CGGGGAGGGG chr6:18263717-18264217 - 38 2.85e-05 GGCCCCTGCT GCGGAGGGGGAG GGAACCCCCA chr20:57709794-57710294 + 65 2.85e-05 CGCGGGGGCC GGGGAGGGGGCG CGCGCTGCGC chr1:200669453-200669953 + 62 2.85e-05 CCCAGGTCCC GGAGAAGGGGCA CCAGGGCGGC chr19:52189960-52190460 + 40 3.06e-05 GGGACTTGGG GAAGACGCGGAG GGGTACCTGG chr16:46883997-46884497 - 61 3.56e-05 TGGCTGCTCC GGAGCGGCTGCG GAGAGTGACG chr7:140696594-140697094 + 6 3.76e-05 TTTCA GAAGCGGCTGCG CACGGACTGC chr5:40835056-40835556 + 77 3.76e-05 GTGGGGTCAA GAGGAGGATGCG GTACCAGGCA chr12:41288168-41288668 - 2 3.76e-05 ACATTACCCA GGAGAATCGGAG C chr16:30697970-30698470 + 80 3.76e-05 GGCCTCGGGA GCGGCAGCGGCG GTTCGCTGG chr20:49219114-49219614 + 64 3.96e-05 CAAAGACGAC GAGGAGGCTGCG AAAAGTTAAG chr19:37467195-37467695 - 34 4.48e-05 TTCGGCGCAG GAAGCAGCGGAA CGATTCGATT chr1:1116138-1116638 + 47 4.79e-05 GGCGTTGCCG GGAGACGGGGCG GGGCGTCGTC chr1:202143696-202144196 - 5 5.77e-05 GGTATCCCCC GGGGTAGAGGAG TCAG chr9:128159736-128160236 - 62 6.14e-05 GGGAGGTCCG GGAGGAGCGGCG GGAGACCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGARGVGGMG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:59209694-59210194 7e-08 26_[+10]_62 chr12:132828700-13282920 2.2e-07 50_[-10]_38 chr19:43754582-43755082 2.2e-07 79_[+10]_9 chr6:30066969-30067469 2.2e-07 84_[+10]_4 chr2:55617407-55617907 8.1e-07 85_[-10]_3 chr12:6753070-6753570 1.4e-06 28_[+10]_60 chr19:2096193-2096693 1.4e-06 13_[+10]_75 chr2:86623716-86624216 2e-06 66_[+10]_22 chr1:22052442-22052942 2.3e-06 88_[+10] chr22:39532648-39533148 2.3e-06 50_[+10]_38 chr22:39399547-39400047 2.6e-06 63_[+10]_25 chr9:121201644-121202144 3.4e-06 88_[+10] chr6:111086997-111087497 3.4e-06 47_[-10]_41 chr19:1652603-1653103 4.3e-06 10_[+10]_78 chr6:113858668-113859168 7.8e-06 5_[+10]_83 chr19:5436604-5437104 9.5e-06 12_[-10]_76 chr12:27780624-27781124 1.1e-05 51_[+10]_37 chr12:48818250-48818750 1.1e-05 32_[-10]_56 chr3:38346639-38347139 1.1e-05 47_[-10]_41 chr19:13774252-13774752 1.1e-05 [-10]_88 chr17:45431497-45431997 1.1e-05 32_[+10]_56 chr8:11201431-11201931 1.1e-05 18_[-10]_70 chr3:48429817-48430317 1.2e-05 53_[-10]_35 chr12:49060582-49061082 1.2e-05 4_[+10]_84 chr11:65569915-65570415 1.4e-05 7_[+10]_81 chr1:151189767-151190267 1.5e-05 70_[-10]_18 chr16:4538674-4539174 1.5e-05 3_[+10]_85 chr7:100895868-100896368 1.7e-05 48_[+10]_40 chr3:13479782-13480282 1.9e-05 50_[-10]_38 chr12:110048407-11004890 1.9e-05 26_[-10]_62 chr11:65083940-65084440 2.1e-05 24_[+10]_64 chr14:23567501-23568001 2.3e-05 58_[-10]_30 chr16:30571823-30572323 2.3e-05 38_[+10]_50 chr16:30534659-30535159 2.6e-05 66_[-10]_22 chr6:18263717-18264217 2.8e-05 37_[-10]_51 chr20:57709794-57710294 2.8e-05 64_[+10]_24 chr1:200669453-200669953 2.8e-05 61_[+10]_27 chr19:52189960-52190460 3.1e-05 39_[+10]_49 chr16:46883997-46884497 3.6e-05 60_[-10]_28 chr7:140696594-140697094 3.8e-05 5_[+10]_83 chr5:40835056-40835556 3.8e-05 76_[+10]_12 chr12:41288168-41288668 3.8e-05 1_[-10]_87 chr16:30697970-30698470 3.8e-05 79_[+10]_9 chr20:49219114-49219614 4e-05 63_[+10]_25 chr19:37467195-37467695 4.5e-05 33_[-10]_55 chr1:1116138-1116638 4.8e-05 46_[+10]_42 chr1:202143696-202144196 5.8e-05 4_[-10]_84 chr9:128159736-128160236 6.1e-05 61_[-10]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGARGVGGMG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVAGARGVGGMG width=12 seqs=48 chr17:59209694-59210194 ( 27) GGAGAAGAGGAG 1 chr12:132828700-13282920 ( 51) GAAGAAGAGGAG 1 chr19:43754582-43755082 ( 80) GAAGAAGAGGAG 1 chr6:30066969-30067469 ( 85) GGAGAAGCGGAG 1 chr2:55617407-55617907 ( 86) GCAGAAGCGGAG 1 chr12:6753070-6753570 ( 29) GAAGAAGGGGAG 1 chr19:2096193-2096693 ( 14) GCAGAAGCGGCG 1 chr2:86623716-86624216 ( 67) GGAGAGGCGGAG 1 chr1:22052442-22052942 ( 89) GGAGAAGCTGAG 1 chr22:39532648-39533148 ( 51) GAAGAAGGGGCG 1 chr22:39399547-39400047 ( 64) GCAGAGGAGGAG 1 chr9:121201644-121202144 ( 89) GGAGAAGATGCG 1 chr6:111086997-111087497 ( 48) GCAGAAGGGGCG 1 chr19:1652603-1653103 ( 11) GCAGAGGAGGCG 1 chr6:113858668-113859168 ( 6) GAAGCAGAGGCG 1 chr19:5436604-5437104 ( 13) GCAGAGGGGGCG 1 chr12:27780624-27781124 ( 52) GCAGAGGCTGAG 1 chr12:48818250-48818750 ( 33) GGAGAGGCTGCG 1 chr3:38346639-38347139 ( 48) GCAGCAGCGGCG 1 chr19:13774252-13774752 ( 1) GCGGAAGAGGCG 1 chr17:45431497-45431997 ( 33) GGAGAGGCTGCG 1 chr8:11201431-11201931 ( 19) GGGGAAGGGGAG 1 chr3:48429817-48430317 ( 54) GGAGCAGGGGCG 1 chr12:49060582-49061082 ( 5) GGAGCGGCGGAG 1 chr11:65569915-65570415 ( 8) GGGGAGGCGGAG 1 chr1:151189767-151190267 ( 71) GAGGAAGATGAG 1 chr16:4538674-4539174 ( 4) GGAGCGGAGGCG 1 chr7:100895868-100896368 ( 49) GCAGCGGCGGAG 1 chr3:13479782-13480282 ( 51) GCGGAAGGGGCG 1 chr12:110048407-11004890 ( 27) GCAGAAGCGGAA 1 chr11:65083940-65084440 ( 25) GCAGCGGAGGCG 1 chr14:23567501-23568001 ( 59) GGGGCAGAGGAG 1 chr16:30571823-30572323 ( 39) GAAGTAGAGGAG 1 chr16:30534659-30535159 ( 67) GGAGCGGGGGCG 1 chr6:18263717-18264217 ( 38) GCGGAGGGGGAG 1 chr20:57709794-57710294 ( 65) GGGGAGGGGGCG 1 chr1:200669453-200669953 ( 62) GGAGAAGGGGCA 1 chr19:52189960-52190460 ( 40) GAAGACGCGGAG 1 chr16:46883997-46884497 ( 61) GGAGCGGCTGCG 1 chr7:140696594-140697094 ( 6) GAAGCGGCTGCG 1 chr5:40835056-40835556 ( 77) GAGGAGGATGCG 1 chr12:41288168-41288668 ( 2) GGAGAATCGGAG 1 chr16:30697970-30698470 ( 80) GCGGCAGCGGCG 1 chr20:49219114-49219614 ( 64) GAGGAGGCTGCG 1 chr19:37467195-37467695 ( 34) GAAGCAGCGGAA 1 chr1:1116138-1116638 ( 47) GGAGACGGGGCG 1 chr1:202143696-202144196 ( 5) GGGGTAGAGGAG 1 chr9:128159736-128160236 ( 62) GGAGGAGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGARGVGGMG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.2185 E= 2.6e+002 -1223 -1223 173 -1223 33 5 54 -1223 192 -1223 -27 -1223 -1223 -1223 173 -1223 175 -16 -385 -225 150 -285 39 -1223 -1223 -1223 170 -325 66 54 -27 -1223 -1223 -1223 139 7 -1223 -1223 173 -1223 127 79 -1223 -1223 -166 -1223 164 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGARGVGGMG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 48 E= 2.6e+002 0.000000 0.000000 1.000000 0.000000 0.250000 0.312500 0.437500 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.270833 0.020833 0.041667 0.562500 0.041667 0.395833 0.000000 0.000000 0.000000 0.979167 0.020833 0.312500 0.437500 0.250000 0.000000 0.000000 0.000000 0.791667 0.208333 0.000000 0.000000 1.000000 0.000000 0.479167 0.520833 0.000000 0.000000 0.062500 0.000000 0.937500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVAGARGVGGMG MEME-10 regular expression -------------------------------------------------------------------------------- G[GCA][AG]G[AC][AG]G[CAG][GT]G[CA]G -------------------------------------------------------------------------------- Time 3278.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:87845991-87846491 3.21e-02 50_[-5(1.74e-05)]_34 chr19:35643432-35643932 7.58e-01 100 chr21:28885034-28885534 8.41e-01 100 chr5:125550183-125550683 1.02e-01 71_[-3(1.61e-07)]_7 chr3:17730374-17730874 1.77e-13 15_[+8(2.82e-16)]_7_[+3(5.72e-07)]_\ 3_[+5(3.33e-06)] chr3:181328970-181329470 8.93e-02 75_[-5(4.06e-06)]_9 chr18:5237676-5238176 2.20e-03 18_[-6(1.69e-07)]_52 chr17:46101212-46101712 7.17e-15 24_[-3(1.74e-06)]_20_[+7(3.14e-19)]_\ 3 chrX:136131069-136131569 2.35e-02 19_[-5(1.74e-05)]_65 chr1:59214654-59215154 3.32e-05 18_[+3(5.70e-09)]_1_[+5(8.05e-05)]_\ 43 chr2:168455858-168456358 8.31e-02 7_[+1(4.54e-05)]_22_[-1(4.54e-05)]_\ 55 chr10:132335549-13233604 1.63e-03 59_[-5(6.56e-06)]_25 chr19:38336598-38337098 2.47e-03 28_[+6(1.96e-06)]_42 chr9:15422516-15423016 1.86e-05 20_[+4(1.51e-10)]_59 chr4:30719306-30719806 4.42e-01 49_[-1(9.07e-05)]_43 chr6:30066969-30067469 1.85e-03 84_[+10(2.22e-07)]_4 chr15:49169779-49170279 2.48e-01 60_[+1(4.54e-05)]_32 chr6:30907816-30908316 2.45e-05 64_[+4(2.10e-09)]_15 chr5:69521089-69521589 1.50e-01 2_[-3(1.37e-06)]_43_[+3(1.10e-05)]_\ 11 chr18:79222-79722 6.61e-02 33_[+8(5.05e-05)]_30 chr7:102572351-102572851 7.18e-01 100 chr9:15510917-15511417 3.64e-02 8_[+6(1.25e-06)]_62 chr12:110048407-11004890 3.05e-01 26_[-10(1.93e-05)]_62 chr19:39480359-39480859 1.31e-01 43_[+1(4.54e-05)]_49 chr18:3409079-3409579 3.28e-14 1_[+5(1.44e-06)]_32_[+7(3.32e-17)]_\ 20 chr6:84227557-84228057 3.50e-02 33_[-6(4.39e-05)]_37 chr4:141133263-141133763 2.86e-05 14_[-3(6.99e-09)]_37_[-1(9.07e-05)]_\ 19 chr10:50463966-50464466 9.89e-04 6_[+3(3.77e-08)]_8_[-5(2.24e-05)]_\ 48 chrX:101407964-101408464 8.34e-01 100 chr17:28227327-28227827 1.31e-01 100 chr1:153783457-153783957 3.64e-02 91_[-1(4.54e-05)]_1 chr19:43754582-43755082 9.47e-03 79_[+10(2.22e-07)]_9 chr8:11201431-11201931 3.12e-03 18_[-10(1.06e-05)]_70 chr8:37514258-37514758 5.30e-03 51_[-5(7.90e-06)]_33 chr7:73522299-73522799 4.69e-03 28_[+6(3.01e-06)]_42 chr7:129948887-129949387 4.75e-03 5_[+1(4.54e-05)]_53_[+3(7.95e-05)]_\ 12 chr18:74861099-74861599 7.92e-02 3_[-3(7.60e-06)]_17_[-5(4.87e-05)]_\ 16_[-5(1.24e-05)]_10 chr17:59565210-59565710 3.51e-01 100 chr5:88516249-88516749 1.83e-02 23_[+5(3.68e-06)]_29_[-3(6.90e-06)]_\ 10 chr2:240820863-240821363 9.74e-01 100 chr1:200669453-200669953 1.51e-02 16_[+1(4.54e-05)]_37_\ [+10(2.85e-05)]_9_[+1(9.07e-05)]_10 chr3:41961655-41962155 4.10e-04 29_[+6(1.89e-07)]_41 chr8:25458841-25459341 3.57e-01 100 chr19:12484493-12484993 4.05e-03 29_[-6(8.37e-05)]_11_[+2(7.64e-06)]_\ 18 chr10:72354649-72355149 7.07e-04 68_[+6(6.96e-09)]_2 chr5:111757912-111758412 4.32e-01 100 chr6:143450494-143450994 7.43e-01 100 chrX:111681177-111681677 8.39e-02 21_[+2(8.86e-05)]_67 chr15:74099969-74100469 4.84e-13 61_[-8(3.06e-21)]_2 chr10:102917690-10291819 3.98e-01 62_[-1(9.07e-05)]_30 chr3:61634622-61635122 3.81e-03 10_[-3(2.18e-06)]_68 chr19:34218197-34218697 7.17e-05 4_[-5(1.16e-06)]_10_[+4(5.32e-05)]_\ 49 chr14:23640561-23641061 3.14e-02 52_[-1(4.54e-05)]_40 chr3:50264220-50264720 3.26e-01 100 chr9:129334440-129334940 1.32e-01 100 chr8:43139953-43140453 9.44e-03 51_[+1(4.54e-05)]_41 chr6:28349818-28350318 1.34e-03 65_[-3(5.30e-08)]_13 chr6:108562571-108563071 7.17e-04 57_[-10(2.26e-05)]_31 chr18:59484761-59485261 1.15e-03 65_[+3(1.37e-06)]_13 chr1:59077933-59078433 2.07e-03 29_[-5(4.02e-07)]_55 chr6:26596736-26597236 1.79e-02 50_[+6(3.87e-06)]_20 chr12:106074988-10607548 1.65e-02 34_[+3(1.32e-05)]_26_[-5(2.24e-05)]_\ 2 chr1:225428300-225428800 3.46e-02 57_[-1(9.07e-05)]_24_[+1(4.54e-05)]_\ 3 chr17:17913881-17914381 3.13e-01 22_[-1(4.54e-05)]_70 chr1:234607973-234608473 6.19e-04 5_[+7(5.96e-05)]_8_[+2(1.11e-05)]_\ 44 chr17:59209694-59210194 7.01e-05 26_[+10(6.97e-08)]_31_\ [+10(2.92e-07)]_19 chr19:17075111-17075611 2.22e-02 2_[+9(2.42e-05)]_71 chr12:12839860-12840360 6.26e-04 28_[-6(1.14e-06)]_42 chr16:70439376-70439876 8.80e-01 100 chr3:4978431-4978931 2.32e-01 17_[-10(4.48e-05)]_71 chr15:74889826-74890326 2.94e-01 100 chr1:85274905-85275405 5.35e-03 74_[-3(5.13e-06)]_4 chr6:159726725-159727225 5.40e-01 85_[+2(7.36e-05)]_3 chr10:50067630-50068130 3.61e-01 100 chr1:226186659-226187159 1.00e-01 100 chr16:30697970-30698470 9.62e-02 79_[+10(3.76e-05)]_9 chr10:62268465-62268965 1.81e-02 7_[+6(1.42e-05)]_19_[+6(9.18e-06)]_\ 14 chr18:59455100-59455600 7.13e-02 100 chrX:54492185-54492685 9.13e-05 54_[+2(3.22e-05)]_1_[+3(2.37e-05)]_\ 11 chr16:30571823-30572323 1.28e-01 38_[+10(2.26e-05)]_50 chr19:40090592-40091092 7.32e-01 100 chr20:38730918-38731418 9.38e-02 11_[+1(4.54e-05)]_81 chr17:43983587-43984087 3.91e-01 77_[+1(4.54e-05)]_15 chr19:29942531-29943031 2.45e-02 71_[-5(1.60e-05)]_13 chr1:218304614-218305114 5.16e-06 70_[-5(7.90e-06)]_14 chr16:2682182-2682682 2.34e-01 100 chr19:42244561-42245061 1.39e-05 38_[-4(1.51e-10)]_41 chrX:47362024-47362524 4.63e-01 100 chr2:119431369-119431869 2.39e-01 100 chr11:28110016-28110516 3.56e-01 82_[+1(9.07e-05)]_10 chr15:75335784-75336284 3.38e-13 46_[+8(3.98e-22)]_17 chr12:56104190-56104690 2.95e-05 78_[+4(2.64e-10)]_1 chr1:156282736-156283236 5.86e-01 100 chr2:86440750-86441250 3.73e-01 100 chr19:39996846-39997346 7.17e-03 70_[-5(3.89e-05)]_14 chr21:36122963-36123463 1.15e-09 30_[+3(1.54e-11)]_8_[+5(3.91e-11)]_\ 24 chr17:60525848-60526348 3.90e-02 67_[+6(1.04e-06)]_3 chr17:49707803-49708303 2.83e-01 100 chr12:109477263-10947776 4.03e-01 100 chr11:64335069-64335569 7.84e-02 100 chr1:53220216-53220716 2.09e-02 28_[-6(4.80e-07)]_42 chr2:191321801-191322301 2.30e-03 77_[+5(6.52e-07)]_7 chr16:4538674-4539174 9.73e-02 3_[+10(1.51e-05)]_85 chr14:51581291-51581791 1.37e-03 52_[+3(7.41e-07)]_9_[+5(4.48e-06)]_\ 1 chr9:133030692-133031192 4.33e-01 44_[-9(5.95e-05)]_29 chr19:38851514-38852014 3.45e-03 6_[-1(4.54e-05)]_86 chr9:18976603-18977103 3.00e-01 100 chr19:1652603-1653103 2.98e-02 10_[+10(4.31e-06)]_78 chr2:112275275-112275775 9.65e-01 100 chr6:153002830-153003330 5.35e-03 3_[-3(1.32e-05)]_15_[-2(4.10e-05)]_\ 48 chr1:179882481-179882981 4.28e-01 33_[-1(9.07e-05)]_59 chr11:65711838-65712338 3.11e-03 19_[-2(3.76e-06)]_69 chr1:228902948-228903448 2.38e-02 45_[-3(7.60e-06)]_33 chr17:45431497-45431997 4.06e-04 9_[-2(2.89e-06)]_11_[+10(1.06e-05)]_\ 56 chr4:139084053-139084553 1.37e-01 [+10(7.43e-05)]_37_[+3(6.55e-05)]_\ 29 chr3:72904222-72904722 5.33e-04 24_[+3(4.04e-05)]_21_[-5(9.22e-07)]_\ 17 chr1:155745473-155745973 6.92e-01 100 chr22:40711460-40711960 2.07e-03 [+3(4.38e-07)]_78 chr5:176388745-176389245 1.01e-01 61_[+6(7.89e-06)]_9 chr1:12019270-12019770 4.08e-01 19_[-1(9.07e-05)]_73 chr12:132828700-13282920 3.80e-02 50_[-10(2.22e-07)]_38 chr1:159916162-159916662 1.90e-02 59_[+5(1.47e-05)]_25 chr5:181184155-181184655 6.76e-03 34_[-2(7.87e-05)]_14_[+2(7.87e-05)]_\ 28 chr12:121794108-12179460 7.89e-01 100 chr6:73310124-73310624 6.85e-03 37_[-7(1.21e-05)]_12_[+1(9.07e-05)]_\ 12 chr16:46883997-46884497 1.27e-05 28_[+4(2.95e-09)]_11_\ [-10(3.56e-05)]_28 chr14:99604323-99604823 5.15e-01 100 chr19:38403000-38403500 2.24e-01 100 chr19:44259570-44260070 7.62e-04 76_[+4(5.08e-10)]_3 chr16:3611825-3612325 2.24e-02 100 chr19:36169238-36169738 9.55e-02 [+3(1.08e-06)]_78 chr5:124735009-124735509 4.46e-02 100 chr1:156661306-156661806 1.88e-02 49_[-3(1.61e-07)]_29 chr19:38975232-38975732 6.52e-01 100 chr1:224615761-224616261 2.09e-01 1_[+10(8.48e-05)]_87 chr1:46132560-46133060 1.05e-01 62_[-6(2.77e-06)]_8 chr6:24774863-24775363 1.03e-02 82_[+1(4.54e-05)]_10 chr16:67846504-67847004 2.97e-02 100 chr5:14156540-14157040 1.09e-01 59_[+5(1.24e-05)]_25 chr1:80403323-80403823 3.68e-02 16_[+3(2.77e-05)]_62 chr22:24727085-24727585 1.21e-02 18_[-3(3.77e-06)]_60 chr3:156816584-156817084 4.41e-01 48_[-5(4.87e-05)]_36 chr19:36573132-36573632 4.95e-04 6_[+4(4.09e-09)]_42_[+1(4.54e-05)]_\ 23 chr2:44167864-44168364 3.53e-01 45_[-1(4.54e-05)]_47 chr5:160008637-160009137 2.67e-09 16_[+3(1.54e-11)]_2_[+3(1.54e-11)]_\ 38 chr1:226939613-226940113 4.97e-01 100 chr10:665554-666054 6.13e-03 1_[+3(1.37e-06)]_77 chr22:19984259-19984759 9.51e-02 85_[-1(4.54e-05)]_7 chr11:2954198-2954698 7.20e-03 4_[-3(4.63e-06)]_13_[-2(3.22e-05)]_\ 49 chr1:151189767-151190267 4.79e-02 6_[-6(5.26e-05)]_34_[-10(1.51e-05)]_\ 18 chr10:75613714-75614214 7.29e-02 43_[+5(7.33e-07)]_41 chr1:183471126-183471626 1.02e-01 80_[+2(2.45e-06)]_8 chr1:26500429-26500929 4.43e-01 51_[-1(4.54e-05)]_41 chr2:55268948-55269448 2.93e-01 32_[-1(9.07e-05)]_60 chr8:37360446-37360946 4.48e-03 43_[-3(1.21e-05)]_35 chr11:62791663-62792163 5.09e-02 55_[+1(4.54e-05)]_10_[+1(4.54e-05)]_\ 19 chr15:68277430-68277930 6.85e-01 100 chr8:37392936-37393436 3.26e-04 5_[-5(1.90e-05)]_12_[-3(3.39e-06)]_\ 45 chr5:83097803-83098303 7.55e-04 46_[-5(2.45e-06)]_10_[-3(6.51e-07)]_\ 6 chr21:44454952-44455452 6.73e-02 80_[-1(4.54e-05)]_12 chr2:237085601-237086101 1.96e-01 50_[+1(4.54e-05)]_42 chr19:54115375-54115875 1.03e-02 75_[-3(1.10e-05)]_3 chr15:65869155-65869655 6.92e-01 100 chr6:17706703-17707203 2.25e-01 61_[+6(3.87e-06)]_9 chr2:239401301-239401801 9.69e-01 100 chr12:58925116-58925616 3.80e-02 49_[+3(1.32e-05)]_29 chr8:109611145-109611645 3.79e-02 78_[+3(6.26e-06)] chr19:28425257-28425757 3.82e-03 16_[+6(4.34e-07)]_54 chr1:63523110-63523610 5.68e-01 100 chr16:1271750-1272250 8.73e-01 100 chr1:92831871-92832371 7.37e-01 100 chr19:44212206-44212706 1.44e-04 27_[+4(1.21e-08)]_52 chr6:42142089-42142589 6.15e-03 31_[-2(1.70e-05)]_57 chr6:109382347-109382847 9.86e-04 27_[+6(1.37e-06)]_43 chr19:3761715-3762215 1.53e-04 24_[+5(9.89e-05)]_47_[+2(7.64e-06)]_\ 1 chr2:70301746-70302246 2.90e-01 64_[+2(4.86e-05)]_24 chr1:227735039-227735539 3.56e-02 12_[-8(1.67e-05)]_51 chr10:100346888-10034738 5.69e-03 7_[+1(4.54e-05)]_6_[+4(4.75e-05)]_\ 58 chr13:20567103-20567603 2.31e-03 2_[-1(4.54e-05)]_30_[-6(2.10e-07)]_\ 30 chr1:144551635-144552135 1.63e-01 100 chr8:28411632-28412132 9.08e-01 100 chr19:37077905-37078405 7.30e-01 100 chr15:73051837-73052337 1.40e-03 57_[-2(8.39e-07)]_31 chr6:133952055-133952555 5.30e-02 27_[-2(6.38e-05)]_1_[-1(4.54e-05)]_\ 52 chr19:11374500-11375000 4.69e-01 8_[+1(9.07e-05)]_84 chr1:37989843-37990343 2.28e-02 100 chr19:47256293-47256793 1.62e-02 2_[+9(4.48e-05)]_32_[+6(4.12e-05)]_\ 9 chr12:41288168-41288668 3.26e-02 1_[-10(3.76e-05)]_13_[-3(1.57e-05)]_\ 10_[-3(8.46e-05)]_20 chr3:169966446-169966946 2.66e-01 65_[+1(9.07e-05)]_27 chr1:163321574-163322074 5.99e-01 100 chr2:20822783-20823283 8.11e-01 100 chr9:97922028-97922528 2.96e-01 100 chr15:67792457-67792957 3.97e-03 40_[-3(1.71e-05)]_6_[-5(9.48e-06)]_\ 16 chr19:8240325-8240825 1.98e-05 28_[+1(4.54e-05)]_34_[-3(5.30e-08)]_\ 8 chr5:17305910-17306410 3.28e-06 34_[+5(9.50e-08)]_16_[+3(3.77e-08)]_\ 12 chrUn_KI270467v1:2001-25 6.35e-03 1_[-5(9.89e-05)]_12_[+3(1.55e-06)]_\ 30_[-5(6.52e-07)]_3 chr17:8121803-8122303 4.16e-03 21_[+10(7.99e-05)]_34_\ [+6(1.53e-05)]_3 chr14:103520882-10352138 1.78e-04 60_[-6(4.53e-10)]_10 chr1:89719597-89720097 5.11e-01 100 chr17:42998055-42998555 7.71e-02 44_[-6(7.47e-05)]_26 chr14:22982542-22983042 5.02e-03 34_[+1(4.54e-05)]_58 chr8:25998489-25998989 6.92e-04 21_[-3(3.32e-07)]_18_[+5(1.88e-07)]_\ 23 chr17:44899470-44899970 4.69e-01 77_[-2(1.70e-05)]_11 chr8:28445272-28445772 3.53e-02 100 chr6:113858668-113859168 3.08e-03 5_[+10(7.76e-06)]_83 chr20:38472556-38473056 2.41e-02 70_[-10(5.22e-05)]_18 chr19:36418507-36419007 1.31e-01 28_[-1(4.54e-05)]_64 chrX:41333420-41333920 1.24e-01 100 chr1:200739054-200739554 7.32e-05 18_[-6(1.05e-08)]_15_[-2(1.11e-05)]_\ 25 chr1:169893869-169894369 9.43e-01 100 chr15:75368255-75368755 1.34e-01 14_[+1(9.07e-05)]_78 chr2:165953696-165954196 1.61e-04 [+10(1.25e-05)]_88 chr10:102152082-10215258 5.54e-01 100 chr16:58129317-58129817 6.59e-01 100 chr11:47578736-47579236 3.76e-01 100 chr13:21176395-21176895 2.21e-02 39_[+2(2.45e-06)]_49 chr15:77420543-77421043 1.99e-02 5_[-5(3.01e-06)]_79 chr19:37217846-37218346 3.89e-01 100 chr14:77616675-77617175 3.32e-01 100 chr21:28992711-28993211 4.83e-02 40_[-6(1.14e-06)]_30 chr2:219541731-219542231 7.23e-01 100 chr17:51153330-51153830 9.82e-01 100 chr5:177086886-177087386 5.73e-02 5_[+7(4.70e-05)]_64 chr19:37467195-37467695 7.38e-07 33_[-10(4.48e-05)]_7_[-4(8.12e-11)]_\ 27 chr1:86774466-86774966 1.07e-02 31_[+3(1.95e-06)]_47 chr12:22544249-22544749 8.54e-02 23_[-1(4.54e-05)]_69 chr1:183471815-183472315 1.65e-03 12_[+6(2.29e-08)]_58 chr17:75855458-75855958 7.58e-02 30_[+1(4.54e-05)]_62 chr19:984111-984611 2.52e-01 100 chr22:39532648-39533148 2.77e-02 50_[+10(2.32e-06)]_38 chr20:58650951-58651451 4.24e-03 46_[+6(7.98e-09)]_24 chr19:35628752-35629252 8.81e-01 100 chr6:42781870-42782370 1.39e-03 49_[-3(5.01e-07)]_9_[+5(2.21e-06)]_\ 4 chr18:70205536-70206036 1.15e-01 100 chr5:103562302-103562802 5.04e-02 24_[-1(4.54e-05)]_68 chr1:145281007-145281507 4.13e-02 32_[-3(5.67e-06)]_46 chr19:35881943-35882443 4.86e-12 29_[+5(2.72e-10)]_2_[+3(1.07e-11)]_\ 10_[-4(2.59e-05)] chr19:40920908-40921408 1.31e-03 29_[-5(4.48e-06)]_16_[+9(1.41e-05)]_\ 12 chr1:1116138-1116638 2.20e-02 46_[+10(4.79e-05)]_8_[-2(3.39e-06)]_\ 22 chr21:37267623-37268123 5.21e-01 100 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16_[-1(9.07e-05)]_8_[+6(3.56e-06)]_\ 38 chr9:76394461-76394961 1.31e-04 18_[+2(5.14e-07)]_40_[-5(1.47e-05)]_\ 14 chr1:155910694-155911194 1.90e-02 63_[+2(8.86e-05)]_25 chr19:40602111-40602611 2.53e-01 100 chr19:34134487-34134987 1.45e-02 17_[-1(4.54e-05)]_55_[-2(5.91e-05)]_\ 8 chr3:128617779-128618279 1.01e-01 89_[+1(4.54e-05)]_3 chr3:13479782-13480282 4.90e-01 50_[-10(1.93e-05)]_38 chr12:42325938-42326438 3.91e-03 64_[-2(3.38e-07)]_24 chr17:80035964-80036464 7.61e-02 100 chr19:39445297-39445797 5.56e-01 100 chr12:8949610-8950110 3.47e-01 100 chr10:99519952-99520452 4.44e-04 9_[+1(4.54e-05)]_61_[-5(1.04e-05)]_\ 6 chr1:150234416-150234916 5.31e-02 62_[+2(4.08e-06)]_5_[-2(4.46e-05)]_\ 9 chr1:234723900-234724400 3.09e-08 31_[+6(7.82e-13)]_39 chr5:59303227-59303727 7.28e-04 11_[+4(3.57e-05)]_44_[-5(1.35e-05)]_\ 8 chr15:70196503-70197003 4.40e-02 30_[-7(2.09e-05)]_39 chr3:9749736-9750236 1.19e-02 31_[-1(9.07e-05)]_61 chr20:49219114-49219614 1.91e-02 14_[+1(4.54e-05)]_41_\ [+10(3.96e-05)]_25 chr15:72375784-72376284 7.14e-01 100 chr6:82260185-82260685 1.55e-01 [+3(6.55e-05)]_11_[-3(7.60e-06)]_45 chr10:5812474-5812974 5.68e-04 1_[+5(1.44e-06)]_43_[+2(1.76e-07)]_\ 28 chr12:27780624-27781124 9.65e-04 10_[-2(7.64e-06)]_29_\ [+10(1.06e-05)]_37 chr1:201946268-201946768 7.88e-01 100 chr20:59032200-59032700 2.51e-01 15_[-1(4.54e-05)]_77 chr19:34677021-34677521 3.19e-01 100 chr11:118689818-11869031 5.15e-01 100 chr19:2739966-2740466 1.14e-01 6_[-2(2.61e-06)]_82 chr1:230978741-230979241 3.98e-04 3_[+4(2.95e-06)]_36_[-4(4.41e-09)]_\ 19 chr19:50384235-50384735 1.28e-01 83_[+1(4.54e-05)]_9 chr19:44207264-44207764 4.75e-02 67_[-2(8.82e-06)]_21 chr22:29766473-29766973 4.04e-01 100 chrX:47659095-47659595 1.23e-02 25_[+1(4.54e-05)]_67 chr5:57173477-57173977 3.39e-04 76_[-1(4.54e-05)]_1_[-2(1.70e-05)]_\ 3 chr7:99504486-99504986 1.74e-01 100 chr22:42856908-42857408 6.58e-02 49_[-8(4.94e-05)]_14 chr16:30814140-30814640 1.36e-02 56_[-2(6.38e-05)]_32 chr5:150436054-150436554 4.05e-02 41_[-2(8.86e-05)]_47 chr19:12610743-12611243 7.76e-02 17_[-2(1.19e-05)]_71 chr5:138491695-138492195 2.24e-01 100 chr19:38336399-38336899 1.15e-02 2_[+6(1.50e-06)]_68 chr16:15590865-15591365 3.97e-03 32_[+5(1.60e-05)]_52 chr18:21612102-21612602 6.60e-02 24_[-1(9.07e-05)]_68 chr7:100119256-100119756 1.18e-03 7_[-3(3.04e-06)]_71 chr20:34302464-34302964 4.79e-02 19_[-1(4.54e-05)]_73 chr19:47608910-47609410 2.80e-03 22_[+2(2.56e-05)]_48_[-5(6.52e-05)]_\ 2 chr17:32142567-32143067 1.71e-01 7_[-1(4.54e-05)]_19_[-1(4.54e-05)]_\ 58 chr8:1975946-1976446 2.83e-02 100 chr22:42090849-42091349 2.93e-02 27_[-2(8.39e-07)]_61 chr17:57849899-57850399 1.53e-04 25_[-1(4.54e-05)]_11_[+6(3.01e-06)]_\ 26 chr1:154558678-154559178 2.70e-01 100 chr1:5992500-5993000 9.67e-02 25_[+1(4.54e-05)]_67 chr1:155244580-155245080 3.44e-03 4_[+6(8.70e-10)]_[+6(2.60e-08)]_\ [+6(6.96e-09)]_6 chr18:62325672-62326172 3.07e-02 79_[+2(2.97e-05)]_9 chr20:50790685-50791185 3.68e-02 29_[-2(1.47e-05)]_29_[+1(4.54e-05)]_\ 22 chr12:106357538-10635803 9.62e-01 100 chrX:106611717-106612217 5.12e-01 55_[+1(4.54e-05)]_37 chr20:32357849-32358349 1.92e-01 100 chr19:38684246-38684746 6.74e-02 61_[+1(4.54e-05)]_31 chr2:73214205-73214705 2.53e-01 74_[-1(4.54e-05)]_18 chr6:44387687-44388187 9.51e-03 65_[+2(3.76e-06)]_23 chrUn_KI270467v1:2915-34 2.03e-05 23_[-5(9.89e-05)]_16_[-3(1.19e-07)]_\ 7_[-5(9.41e-09)] chr14:21511126-21511626 4.49e-01 100 chr2:176157954-176158454 2.24e-09 2_[-5(5.39e-09)]_52_[+2(2.06e-06)]_\ 18 chr11:36509922-36510422 8.76e-01 100 chr11:65569915-65570415 5.68e-03 7_[+10(1.41e-05)]_6_[+9(6.89e-05)]_\ 21_[+2(9.58e-05)]_15 chr15:70096208-70096708 5.92e-02 100 chr19:1407199-1407699 1.81e-02 22_[+6(6.45e-07)]_48 chr1:26900239-26900739 3.15e-01 65_[-1(4.54e-05)]_27 chr19:4791364-4791864 6.98e-04 40_[+4(2.10e-09)]_39 chr22:39502198-39502698 7.77e-04 42_[+6(1.52e-07)]_28 chr15:57706416-57706916 2.05e-02 87_[+2(1.92e-05)]_1 chr11:66466364-66466864 3.37e-02 100 chr11:46617807-46618307 5.69e-03 55_[-1(4.54e-05)]_37 chr14:60485848-60486348 1.74e-02 33_[-1(9.07e-05)]_10_[+2(1.47e-05)]_\ 37 chr10:132332188-13233268 3.28e-01 100 chr9:121201644-121202144 2.69e-05 40_[-2(2.06e-06)]_36_\ [+10(3.43e-06)] chr9:128419102-128419602 2.05e-03 73_[+2(3.38e-07)]_15 chr19:40420934-40421434 3.60e-01 100 chr19:3573547-3574047 7.20e-03 6_[+6(1.88e-05)]_41_[+2(1.47e-05)]_\ 11 chr1:202143696-202144196 7.99e-03 4_[-10(5.77e-05)]_30_[-2(9.89e-06)]_\ 42 chr9:128159736-128160236 2.78e-02 61_[-10(6.14e-05)]_27 chr12:56299842-56300342 5.35e-02 38_[+2(2.06e-06)]_50 chr7:100895868-100896368 1.35e-03 48_[+10(1.72e-05)]_3_[+6(4.39e-05)]_\ 7 chr19:57350985-57351485 1.19e-01 51_[+1(4.54e-05)]_41 chr1:52365052-52365552 3.00e-02 53_[-2(6.38e-06)]_35 chrX:24054469-24054969 9.98e-02 32_[+7(2.41e-05)]_37 chr14:23567501-23568001 3.60e-01 58_[-10(2.26e-05)]_30 chr19:19385101-19385601 3.78e-02 53_[-1(4.54e-05)]_39 chr19:44890583-44891083 9.26e-01 100 chr15:51971498-51971998 3.83e-01 100 chrX:154397513-154398013 1.54e-03 15_[-2(8.39e-07)]_73 chr17:64507284-64507784 8.98e-03 25_[-5(5.79e-07)]_1_[-1(4.54e-05)]_\ 50 chr1:61725042-61725542 2.03e-02 40_[+2(1.70e-05)]_48 chr6:166342278-166342778 5.94e-03 60_[+2(2.06e-06)]_28 chr1:150067015-150067515 8.25e-02 100 chr7:105013776-105014276 3.65e-03 38_[-6(1.04e-06)]_32 chr3:5188626-5189126 1.28e-01 100 chr1:234676110-234676610 3.26e-02 52_[+2(8.82e-06)]_36 chr3:9397295-9397795 1.86e-02 38_[+6(9.18e-06)]_15_[-1(9.07e-05)]_\ 9 chr12:106955342-10695584 9.18e-03 38_[+2(3.22e-05)]_50 chr20:63973775-63974275 3.15e-01 41_[-2(1.70e-05)]_47 chr19:42220110-42220610 4.92e-02 48_[+1(4.54e-05)]_44 chrX:111680967-111681467 7.25e-01 100 chr20:32109608-32110108 6.22e-01 100 chr12:57771812-57772312 2.82e-02 80_[-2(8.82e-06)]_8 chr19:37594262-37594762 7.65e-03 3_[+1(4.54e-05)]_1_[+1(9.07e-05)]_\ 80 chrX:77895288-77895788 7.33e-02 38_[+2(1.11e-05)]_50 chr8:77000459-77000959 1.91e-01 56_[+2(5.48e-06)]_32 chr19:47243984-47244484 6.85e-01 62_[+2(5.18e-05)]_26 chr2:9630965-9631465 3.62e-02 57_[-2(1.76e-07)]_31 chr10:73096934-73097434 5.44e-04 15_[-2(1.06e-07)]_73 chr19:18157569-18158069 1.45e-02 42_[+2(1.47e-05)]_12_[-1(4.54e-05)]_\ 26 chr22:24270791-24271291 3.52e-01 100 chr8:100951822-100952322 2.32e-04 39_[-2(1.76e-07)]_19_[+1(4.54e-05)]_\ 22 chr2:55232385-55232885 1.21e-02 70_[+2(1.06e-07)]_18 chr16:24539321-24539821 1.96e-01 34_[+2(1.70e-05)]_54 chr3:186783078-186783578 3.02e-02 100 chr17:28719752-28720252 7.69e-02 34_[+2(3.22e-05)]_54 chr4:75673215-75673715 2.01e-03 83_[-10(9.35e-05)]_5 chr17:7484009-7484509 7.15e-02 66_[+2(5.53e-05)]_22 chr7:100450327-100450827 2.22e-01 30_[-2(4.86e-05)]_58 chr19:41859947-41860447 2.76e-01 100 chr19:13764075-13764575 5.50e-01 100 chr19:49496137-49496637 3.09e-02 51_[-1(4.54e-05)]_41 chr2:55617407-55617907 1.18e-03 2_[-6(3.42e-05)]_14_[+1(4.54e-05)]_\ 31_[-10(8.06e-07)]_3 chr19:1905529-1906029 6.95e-05 1_[+2(3.38e-07)]_42_[+7(3.40e-05)]_\ 14 chr1:23344121-23344621 1.65e-01 17_[-2(8.39e-07)]_71 chr11:62599180-62599680 2.19e-01 37_[-1(4.54e-05)]_10_[+2(4.46e-05)]_\ 33 chr19:49487312-49487812 1.34e-02 69_[+2(3.22e-05)]_19 chr19:52189757-52190257 4.08e-05 45_[-6(3.34e-08)]_25 chr1:22052442-22052942 4.19e-05 54_[+2(2.45e-06)]_22_\ [+10(2.32e-06)] chr5:151771323-151771823 1.08e-01 100 chr14:91510071-91510571 5.54e-02 62_[+1(4.54e-05)]_30 chr15:72473957-72474457 1.74e-03 5_[-4(3.18e-05)]_34_[-2(7.03e-06)]_\ 10_[+1(4.54e-05)]_10 chr20:44885348-44885848 1.16e-07 3_[-1(4.54e-05)]_4_[-6(1.61e-10)]_\ 25_[+2(1.47e-05)]_18 chr16:3003784-3004284 4.02e-01 65_[+4(2.18e-05)]_14 chr19:39435697-39436197 3.68e-01 100 chr20:35742048-35742548 1.73e-04 8_[+3(2.65e-08)]_8_[+8(3.80e-05)]_\ 25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************