# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:38:09 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZXDB.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:38:09 PDT 2018)
#        host: kadru
#        when: Thu May 10 19:32:59 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.198 C 0.302 G 0.305 T 0.195


MOTIF GCCCCTGB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCCTGB   VCAGGGGC        156         22   3.5e-030   1.1e-025
#         GCCCCTGC   GCAGGGGC        102          9   4.1e-023   1.3e-018
#         GCCCCTGG   CCAGGGGC         47         10   2.1e-007   6.6e-003
#         GCCCCTGT   ACAGGGGC         18          3   6.8e-004   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 174 E= 1.1e-025
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.609195 0.281609 0.109195


MOTIF GGARACCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGARACCC   GGGTYTCC         74          5   4.9e-018   1.6e-013
#         GGAAACCC   GGGTTTCC         45          3   3.1e-011   9.8e-007
#         GGAGACCC   GGGTCTCC         30          2   8.9e-008   2.8e-003

letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 1.6e-013
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.605263 0.000000 0.394737 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACGTSA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACGTSA     TSACGT         48          9   3.9e-008   1.2e-003
#           ACGTCA     TGACGT         24          3   2.1e-005   6.5e-001
#           ACGTGA     TCACGT         28          6   8.0e-005   2.5e+000

letter-probability matrix: alength= 4 w= 6 nsites= 61 E= 1.2e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.442623 0.557377 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GATAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GATAA      TTATC         85         35   9.0e-007   2.8e-002
#            GATAA      TTATC         85         35   9.0e-007   2.8e-002

letter-probability matrix: alength= 4 w= 5 nsites= 102 E= 2.8e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF RAACACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     RAACACA    TGTGTTY         26          2   1.2e-006   3.7e-002
#          AAACACA    TGTGTTT         16          2   6.1e-004   1.9e+001
#          GAACACA    TGTGTTC         10          0   9.4e-004   2.9e+001

letter-probability matrix: alength= 4 w= 7 nsites= 26 E= 3.7e-002
0.615385 0.000000 0.384615 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 26.95 seconds