# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 17:03:28 PST 2017) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 17:03:29 PST 2017) # host: indra # when: Mon Dec 18 17:19:24 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.275 C 0.224 G 0.220 T 0.281 MOTIF GKGAGK DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GKGAGK MCTCMC 279 105 9.4e-028 2.9e-023 # GTGAGT ACTCAC 179 45 2.1e-024 6.5e-020 # GGGAGG CCTCCC 80 28 8.2e-008 2.6e-003 # GGGAGT ACTCCC 44 20 1.4e-003 4.5e+001 # GTGAGG CCTCAC 46 24 4.6e-003 1.5e+002 letter-probability matrix: alength= 4 w= 6 nsites= 425 E= 2.9e-023 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.308235 0.691765 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.322353 0.677647 MOTIF HATAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST HATAAA TTTATD 251 86 4.6e-027 1.4e-022 # AATAAA TTTATT 123 38 1.8e-013 5.6e-009 # TATAAA TTTATA 86 25 4.6e-010 1.4e-005 # CATAAA TTTATG 89 33 4.7e-008 1.4e-003 letter-probability matrix: alength= 4 w= 6 nsites= 341 E= 1.4e-022 0.422287 0.304985 0.000000 0.272727 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTAAAYA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GTAAAYA TRTTTAC 47 6 1.4e-009 4.2e-005 # GTAAACA TGTTTAC 35 4 1.1e-007 3.3e-003 # GTAAATA TATTTAC 13 2 3.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 4.2e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.720000 0.000000 0.280000 1.000000 0.000000 0.000000 0.000000 MOTIF AKTCATKC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AKTCATKC GMATGAMT 32 0 1.5e-010 4.5e-006 # ATTCATTC GAATGAAT 12 0 2.3e-004 6.9e+000 # AGTCATTC GAATGACT 8 0 3.8e-003 1.1e+002 # AGTCATGC GCATGACT 7 0 7.7e-003 2.3e+002 # ATTCATGC GCATGAAT 7 0 7.7e-003 2.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.5e-006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.416667 0.583333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.583333 0.000000 1.000000 0.000000 0.000000 MOTIF ACASAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACASAG CTSTGT 127 62 1.6e-007 4.7e-003 # ACAGAG CTCTGT 69 30 2.8e-005 8.2e-001 # ACACAG CTGTGT 72 35 1.2e-004 3.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 146 E= 4.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.547945 0.452055 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TTGTTTW DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TTGTTTW WAAACAA 61 20 1.3e-006 3.9e-002 # TTGTTTT AAAACAA 45 15 4.5e-005 1.3e+000 # TTGTTTA TAAACAA 18 5 5.0e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 64 E= 3.9e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.281250 0.000000 0.000000 0.718750 MOTIF CATGGCK DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CATGGCK MGCCATG 35 6 1.7e-006 5.0e-002 # CATGGCT AGCCATG 28 6 8.0e-005 2.3e+000 # CATGGCG CGCCATG 8 0 3.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 37 E= 5.0e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.243243 0.756757 # Stopping reason: E-value threshold exceeded # Running time: 76.86 seconds