******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr13:30466727-30467227 1.0000 100 chr10:63707209-63707709 1.0000 100 chr5:59317236-59317736 1.0000 100 chr8:98011515-98012015 1.0000 100 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1.0000 100 chr11:1201411-1201911 1.0000 100 chr5:139247815-139248315 1.0000 100 chr12:132343527-13234402 1.0000 100 chr17:50372843-50373343 1.0000 100 chr1:91574809-91575309 1.0000 100 chr5:115702008-115702508 1.0000 100 chr5:14156490-14156990 1.0000 100 chrX:73944011-73944511 1.0000 100 chr16:88247465-88247965 1.0000 100 chr11:64415949-64416449 1.0000 100 chr5:59303215-59303715 1.0000 100 chr12:57782490-57782990 1.0000 100 chr2:84958389-84958889 1.0000 100 chr1:243179658-243180158 1.0000 100 chr19:8240348-8240848 1.0000 100 chr9:132377729-132378229 1.0000 100 chr1:229253246-229253746 1.0000 100 chr19:35545214-35545714 1.0000 100 chr6:21748584-21749084 1.0000 100 chr17:73268780-73269280 1.0000 100 chr8:6840529-6841029 1.0000 100 chr6:149012125-149012625 1.0000 100 chr19:35879953-35880453 1.0000 100 chr21:36202092-36202592 1.0000 100 chr1:232704714-232705214 1.0000 100 chr6:32983005-32983505 1.0000 100 chr19:2529419-2529919 1.0000 100 chr5:139050962-139051462 1.0000 100 chr10:72204255-72204755 1.0000 100 chr6:53233245-53233745 1.0000 100 chr7:157387136-157387636 1.0000 100 chr1:225700112-225700612 1.0000 100 chr8:510311-510811 1.0000 100 chr19:40862651-40863151 1.0000 100 chr5:175331233-175331733 1.0000 100 chr1:203625539-203626039 1.0000 100 chr6:138405903-138406403 1.0000 100 chr17:45320821-45321321 1.0000 100 chr14:103801395-10380189 1.0000 100 chr9:130780834-130781334 1.0000 100 chr16:12120424-12120924 1.0000 100 chr12:6323182-6323682 1.0000 100 chr21:37087022-37087522 1.0000 100 chr12:112375056-11237555 1.0000 100 chr13:98221231-98221731 1.0000 100 chr6:16757308-16757808 1.0000 100 chr9:136579623-136580123 1.0000 100 chr17:48239234-48239734 1.0000 100 chr12:70242550-70243050 1.0000 100 chr10:110916562-11091706 1.0000 100 chr10:50463981-50464481 1.0000 100 chr12:10721665-10722165 1.0000 100 chr16:29273554-29274054 1.0000 100 chr3:61821715-61822215 1.0000 100 chr15:64387505-64388005 1.0000 100 chr1:86774468-86774968 1.0000 100 chr1:232793968-232794468 1.0000 100 chr10:75377670-75378170 1.0000 100 chr5:69521107-69521607 1.0000 100 chr6:82260180-82260680 1.0000 100 chr15:81962411-81962911 1.0000 100 chr6:85078033-85078533 1.0000 100 chr20:2947364-2947864 1.0000 100 chr17:50694065-50694565 1.0000 100 chr4:8300804-8301304 1.0000 100 chr14:103350025-10335052 1.0000 100 chr12:71455365-71455865 1.0000 100 chr1:235903045-235903545 1.0000 100 chr8:109611128-109611628 1.0000 100 chr1:125179941-125180441 1.0000 100 chr9:137509078-137509578 1.0000 100 chr1:64183850-64184350 1.0000 100 chr15:71747481-71747981 1.0000 100 chr20:4603665-4604165 1.0000 100 chr1:224317291-224317791 1.0000 100 chr19:42032342-42032842 1.0000 100 chr19:32373727-32374227 1.0000 100 chr18:49656006-49656506 1.0000 100 chr5:1870804-1871304 1.0000 100 chr10:121819084-12181958 1.0000 100 chr12:1051633-1052133 1.0000 100 chr1:235919321-235919821 1.0000 100 chr1:234961981-234962481 1.0000 100 chr1:183026345-183026845 1.0000 100 chr19:40831786-40832286 1.0000 100 chr9:132378306-132378806 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 599 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59900 N= 599 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.278 C 0.222 G 0.222 T 0.278 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN5CP.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.279 C 0.221 G 0.221 T 0.279 ******************************************************************************** ******************************************************************************** MOTIF YTTYATTGACTCACWB MEME-1 width = 16 sites = 213 llr = 2019 E-value = 3.6e-178 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTYATTGACTCACWB MEME-1 Description -------------------------------------------------------------------------------- Simplified A 211171229:::8:42 pos.-specific C 3213:1:2:9:91924 probability G 1:1:3125:::1:::2 matrix T 4775:872:1a:1142 bits 2.2 2.0 1.7 * * 1.5 *** * Relative 1.3 **** * Entropy 1.1 * ****** (13.7 bits) 0.9 * ** ****** 0.7 ** *** ****** 0.4 ****** ****** 0.2 *************** 0.0 ---------------- Multilevel TTTTATTGACTCACAC consensus CC CG T TG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYATTGACTCACWB MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:233706766-233707266 + 3 8.96e-09 gg tttcattgactcacag ttccacatgg chr19:38713018-38713518 + 4 2.05e-08 TTC CTTTATTCactcactc attcagcaac chr6:21748584-21749084 + 69 2.68e-08 ATGCCTTTTA TTTTATTGACTCACTA AATTCTTAGA chr17:50694065-50694565 - 21 4.35e-08 TCAAGGCTAA CTTCATGGACTCACTC TGTTTAGTGA chr19:16165616-16166116 + 51 4.35e-08 agtaactgat tttcattcactcactc actcaacaag chr16:23213332-23213832 + 29 4.35e-08 cCCCTCTCCT TTTCATTCACTCACTC ATTCATTTCC chr1:9163898-9164398 - 11 5.38e-08 CATTTGTTTG TTTCGTTGACTCACCC AGTCTAACCG chr1:235734255-235734755 + 14 5.38e-08 AGTACTATGG TTTCATTGACTCACCT CTTTGATCAT chr1:151542701-151543201 - 46 6.61e-08 CTGTTCATTT ATTTATTGACTCACTT TGCACATGAA chr16:29273554-29274054 - 18 1.02e-07 TGACTCACTC ACTCATTGACTCACTC ACTCATTCAC chr19:40862651-40863151 + 35 1.02e-07 AGGCATTTGG TTTTATGGACTCACAT GCTTGTTACA chr16:88247465-88247965 - 62 1.02e-07 TCATTCACTC ACTCATTGACTCACTC ACTCGCTCAT chr20:63131518-63132018 + 16 1.02e-07 agaaaagaga cttaattgactcacag ttccacatgg chr17:73268780-73269280 + 45 1.25e-07 actctcactc atttattcactcactc acctattcac chr6:165846075-165846575 - 80 1.25e-07 CACAA CTTTATTTACTCACCG TAACTGCACT chr1:63753488-63753988 + 27 1.25e-07 aggaaagatg tttaattgactcacag ttctgcatgg chr19:34129846-34130346 + 73 1.25e-07 agaaacgagg tttaattgactcacag ttctgcatgg chr6:16168905-16169405 - 80 1.25e-07 AGAGG TTTAATTGACTCACAG CTGCAAATGG chr1:161026955-161027455 + 15 1.25e-07 aggaaagagg tttaattgactcacag ttccacatgg chr17:77237214-77237714 - 82 1.25e-07 AGG TTTAATTGACTCACAG TTCCACATGG chr1:231411089-231411589 - 64 1.25e-07 AGAAAAGCAG TTTAATTGACTCACAG TTCCACATGG chr6:150419540-150420040 - 59 1.25e-07 AGGAAAGAAG TTTAATTGACTCACAG TTCCATGTGG chr6:134673536-134674036 + 1 1.25e-07 . TTTCATTTACTCACAT TTCAGTGATG chr5:96744048-96744548 + 45 1.25e-07 aggaaagaag tttaattgactcacag ttcctcatgg chr6:166466684-166467184 + 46 2.11e-07 tcactccctc acttgttgactcactc attaactcac chr17:76611371-76611871 - 43 2.11e-07 CAGTTCCTGT CCTCATAGACTCACTC ACAGTCTAAG chr11:1201411-1201911 - 1 3.50e-07 TCATGCATTC ACTTATTCACTCACTC chr10:95237491-95237991 - 74 3.50e-07 CCCTGCCTTG GTTAATTGACTCACAC CAGCTGTGCG chr20:63057136-63057636 + 22 3.50e-07 acacacaatc atttgtttactcactc attcacattc chr10:75358946-75359446 + 43 4.06e-07 AAAGGCAGGT GTTAATTGACTCACTC CCTCTGCCCC chr9:136579623-136580123 + 62 4.74e-07 tcactccctg actcattcactcactc actcattccc chr11:1155136-1155636 + 46 4.74e-07 ttactcactc actcatttactcactc attcattcat chr15:70507799-70508299 + 32 4.74e-07 aaatagggtg tcttgtttactcacag tggccttagg chr19:8240348-8240848 - 18 5.51e-07 ACACACTTGC ATACATTGACTCACTC ACCCGCCCCT chr1:223707060-223707560 + 37 5.51e-07 tcactccctc tctcATTTACTCACAA GGTCAGTGGC chr21:42261435-42261935 - 45 5.51e-07 ACCATCCTTG TCTTGTTCACTCACCC GCCAGCTTCC chr1:26097581-26098081 - 31 5.51e-07 ATAAATTTAT CTTTATAAACTCACAG ATTGTTATCT chr2:100004998-100005498 + 65 5.51e-07 ttaactagag ttttatgaactcactg AATTCCaaaa chr4:8301007-8301507 + 46 5.51e-07 TCACACTCAG CTTTATTGATTCACAC TCATCTTTAT chr15:57914479-57914979 + 45 6.40e-07 TTTTATGAGC CTTCGTTTACTCACCT GTGACAGGAT chr19:40979561-40980061 + 66 6.40e-07 gaaaaagagg tttaatggactcacag ttccacatgg chr21:36097825-36098325 + 85 6.40e-07 tgaaaggaag tttaatggactcacag chr4:8609078-8609578 + 73 6.40e-07 tcattctctc attcattcactcacaa actcattcac chr5:14202580-14203080 - 55 6.40e-07 GAAAAAGAGG TTTAATGGACTCACAG CTCCACGTAG chr19:33189159-33189659 + 66 6.40e-07 aggaaagagg tttaatggactcacag ttgcatacgg chr1:22271790-22272290 + 35 7.44e-07 tccttcattc gctcatttactcactc gttcactaat chr12:107759400-10775990 - 14 8.61e-07 GGTCATCACG TTTTAGTGACTCACAA CAAAGCAGAA chr1:85521338-85521838 + 67 9.90e-07 Accccaaaga ctccatagactcactc ctgtatctag chr1:145541142-145541642 - 53 9.90e-07 ACCCCAAAGA CTCCATAGACTCACTC CTGTATCTAG chr8:95134547-95135047 + 40 9.90e-07 CTCCTCGGTA ATTCATAGACTCACAA AACGCGTTGT chr6:85078033-85078533 - 57 1.31e-06 GCATGTTCAA CTTTATTGACTCAGAG GTGATTATCC chr9:130780834-130781334 - 35 1.31e-06 TCTCTTGGGA CTGCGTTGACTCACTG CGTCTTCAGA chr10:132273296-13227379 - 73 1.31e-06 GTAACCATGT ATTCATTCACTCACCA TGTGTTCATT chr17:51217906-51218406 + 8 1.31e-06 TATTTAC TTCTATTTACTCACTT ATTGCCTCTT chr15:36951758-36952258 + 31 1.72e-06 TATGAGGCTG CTTTGGTCACTCACAC TCATTCCTGG chr16:66977650-66978150 + 83 1.72e-06 CCAAGGCCAA CCTTAGTTACTCACAC AA chr19:40831786-40832286 + 2 2.25e-06 G TTTTATGGACTCACGT GCTTGTTACA chr15:51312118-51312618 + 4 2.56e-06 AGA CTATGTTAACTCACCC ATATATGTAA chr11:34222873-34223373 - 71 2.56e-06 CACACGCCAG CCTCGTAAACTCACTC TCCGCTTGTC chr15:67690901-67691401 + 45 2.93e-06 GGTTTCCATT CTTTATTCactcatcc attcaacaaa chr6:85464105-85464605 + 8 2.93e-06 CTGTACT CTTTACTAACTCACTT TCCATGACGC chr5:107520017-107520517 - 67 2.93e-06 CTTTTCTCAC TCTTATTGATTCACTG CCTTTATAAA chr13:113155903-11315640 + 6 2.93e-06 agcgg tttaatgaactcacag ttccacatgg chr20:62501891-62502391 - 53 3.33e-06 AGAAAAGAGG TTTGGTTGACTCACCG TTCCGCCTGG chr1:153490383-153490883 - 76 3.78e-06 GTCTAGAGT TTTCAATCACTCACTT CCAGATGAGT chr17:79407324-79407824 - 50 4.28e-06 GCGGAGCCTC ATTTATTGTCTCACAT TGTGAGTTAC chr7:44478737-44479237 + 8 4.28e-06 aaagagg tttaattgactcgcag ttcagcatgg chr1:226308067-226308567 - 36 4.28e-06 CCTCCCCTAA CCATGTTTACTCACCC TGACATCTAA chr9:132378306-132378806 - 13 4.83e-06 TGCACTCACA CCACATGCACTCACAC CCACCACATG chr9:132377729-132378229 - 19 4.83e-06 CTCACACACA CCACATGCACTCACAC CACATGCATT chr8:101360845-101361345 + 75 4.83e-06 TGTTTAGTGA CTTTATTGACTCAATT CCCGCCTCTC chr9:132377068-132377568 - 2 4.83e-06 TTCACATGCA CCACATGCACTCACAC C chr8:71076001-71076501 + 56 4.83e-06 agcactgtga atttattgtctcactt ccttctagcc chr15:67736684-67737184 + 85 5.46e-06 gtccacagcc attaaatgactcactc chr8:37536272-37536772 + 7 5.46e-06 ccaaga ctttatttcctcacct gtaaaacgag chr20:16580023-16580523 + 77 5.46e-06 TAAACCCTTA CCCTGTTAACTCACCC TATGACTG chr10:124530100-12453060 + 74 5.46e-06 GCACGCACAG CTACATACACTCACCC GGGCCCACGT chr1:67674452-67674952 - 55 6.16e-06 TGCTGGAGAC CATTATGAACTCACAG TTGTCATTTG chr8:6840529-6841029 - 10 6.94e-06 GGCTGCTTGC TTTCATTCATTCACTT ACTTGTTTA chr1:86774468-86774968 - 82 7.79e-06 CTG TTCTATTGACTCTCTT TGATGGAATA chr4:8300804-8301304 + 23 8.73e-06 CACTCATCTT TATTATTGATTCACAC TCTCAGCTTT chr15:71295313-71295813 + 32 8.73e-06 caatctggct ctgtatgaactcactt tgtgactctg chr5:92559688-92560188 + 12 8.73e-06 GGAATCTGAG TTTTGTAGACTCGCCC AAACACTTAA chr17:70661278-70661778 + 49 8.73e-06 CCAATTAGAA TTTTATGGACTCTCCA GTACaagtgt chrX:13774621-13775121 - 11 8.73e-06 TCCAAGTCCT TTTAGTAAACTCACTG AGGGCAGAAC chr16:78230772-78231272 + 4 9.78e-06 ATC CCTTATTTACGCACTG ACTGTGGTAC chr12:12883245-12883745 + 10 9.78e-06 GAGAATTAA CTTTGTTTACTGACCT TCTTATCTTG chr10:12635133-12635633 - 40 9.78e-06 CTGAACAGTT TTGCACTGACTCACTG CTTCATTGAC chr13:39605616-39606116 + 47 9.78e-06 TGGATAGTAG TCTCATTGAGTCACAA GATGAGATCA chr13:20882941-20883441 + 45 9.78e-06 caatagttat cttcgttaactctctt caattacacc chr6:149012125-149012625 - 25 1.09e-05 CTAAGTTAAC TTTTATTGCCTCATAC ACTCTTCCTT chr17:76440941-76441441 - 16 1.09e-05 TGTGAGCCAG GCATGTTAACTCACAC TTTACCTGTG chr1:224264309-224264809 - 10 1.09e-05 TTGTGGCTGG ATGCAGTGACTCACAC CTGTAATCC chr1:235917394-235917894 + 40 1.09e-05 AAAAGCAAGC CCACATTGACTCATTC ATTTGATGCT chr13:97243061-97243561 - 32 1.09e-05 CTCACTTAGG GTTTGTTGACTGACTA AATAAATAAG chr1:62720880-62721380 - 61 1.09e-05 TTCCTTTTCC AATTATAGACTCACTA AAGCCTCTGT chr21:36914319-36914819 - 74 1.09e-05 ATTAGAAATG ACTTATTCACTCCCTG CTTTTACTGT chr6:26596713-26597213 - 58 1.22e-05 TCCTCTGCCT CCATGTTGACTGACAC GAGCGGCACG chr11:65468851-65469351 + 57 1.22e-05 GAAGCCCTGA TTTCATAGACTCATCT TGCAGCCTCA chr6:35454713-35455213 + 58 1.22e-05 taccttcacc ttttaggaactcacaa tttggtgaaa chr14:103801395-10380189 + 40 1.52e-05 TATTGCATCA CCTCAATGACTCCCTC CCTTTATAGA chr1:225700112-225700612 + 39 1.52e-05 TGTCCAGGAG TTTTACACACTCACTA AACAAACAGA chr1:116853595-116854095 + 17 1.52e-05 GCTGACCTAT GCCTGTTGACTCACCA TGTAAACACA chr10:130156335-13015683 - 3 1.52e-05 TAATCCTCAC ACGTATAGACTCACTT AA chr1:10730979-10731479 - 10 1.52e-05 TGATGTGAGA CTTTGTAACCTCACAC ATCAGTTAT chr19:10286359-10286859 - 27 1.52e-05 GTTGAGAAAG CTTTATTAACTAACAC AAAGGAAGTC chr20:33821398-33821898 + 50 1.52e-05 ATTAggctgg gtatggtgactcacac ctgtaatccc chr4:156931262-156931762 - 23 1.52e-05 GAAAGAGAAT CACTGTTGACTCACCT CCCCCACAGG chr6:156963918-156964418 + 30 1.52e-05 CAGCTGCATG CCTTATTAACTCATCT TGCAACCTTT chr12:10721665-10722165 + 22 1.69e-05 CTTTGCAAGC GTTTAAGAACTCACAC AGGGGCGTTA chr6:11434664-11435164 - 73 1.69e-05 ATTCAGTTGG TTTTGTTAACTCCCCA TGATGCAGTA chr7:98398799-98399299 + 58 1.69e-05 AGAAAGAACG TTTTATTTACACACTT GGTCAGTACC chr5:1870804-1871304 - 12 1.88e-05 TCACACAGGC ACGCATGCACTCACAC TCACAGGCAC chr12:57782490-57782990 + 59 1.88e-05 CGCGCCGTAG GTTTGTTGCCTCACCA GTGCGCCCGC chr6:33758776-33759276 - 19 1.88e-05 ACACTACAGT TTTTATTAACTCAGCA TCCCATGTTT chr10:60944806-60945306 + 54 1.88e-05 CAGGGGTAGT Tttcatgcattcacat aaatgcttat chr6:16757308-16757808 + 44 2.09e-05 AATTTACCAA CCACATAAACTCACAA AACGGTAAAA chr10:112732199-11273269 + 76 2.09e-05 ATGGACAAGG GTTTAATTACTCACCA CATCTGTCA chr10:63707209-63707709 - 84 2.09e-05 A CTAAACTGACTCACAT CTTTCTGGGC chr1:145892034-145892534 + 27 2.32e-05 CCTCCTTTTT TCCTGTTGACTCTCCC CATCCGGCTC chr1:229950084-229950584 + 70 2.32e-05 ctctgtatgc ttttgtatactcatag cttagttgtc chr9:137617324-137617824 - 18 2.32e-05 CCATACCTGT CTTCGTTGACTTACTT GGCTCCATCA chr12:1051633-1052133 - 40 2.57e-05 TGCCTTAGTG CTTTATTAATTCACGC TATTCATCAA chr19:42032342-42032842 + 78 2.57e-05 acaatggaat cctTatatcctcactt gaatttt chr13:105969648-10597014 + 21 2.57e-05 CAAGGAGTGA TCTGATAAACTCACAG AGTGGTATta chr3:99084802-99085302 - 74 2.57e-05 ACCACAAACC TACTATAGACTCACAA TCCATTTCTC chr1:47591727-47592227 - 24 2.57e-05 CTCACCTTCA TCTCATAGACACACAC ACTACACACA chr6:125584491-125584991 + 4 2.57e-05 TCC CTTTGTTTACTCAGCA GCTTATGCAT chr9:137509078-137509578 - 31 2.84e-05 CTCGTACCAG CTAAACTCACTCACAC CAGCTAAACT chr5:175331233-175331733 - 51 2.84e-05 AGATCACACG GTTTGTTTACTCTCTA CAGGGTTAGT chr5:139050962-139051462 + 49 2.84e-05 CACACACCAC TCGCATAAACTCACTT TGCTAATCTA chr5:139247815-139248315 - 18 2.84e-05 CCATAAAAAC TATCAATTACTCACTG TGGCTTGGGT chr9:108933867-108934367 - 21 2.84e-05 GCTGCGGCTG CCTAGTTGACGCACCC ATTGAGTCGC chr6:56652877-56653377 - 63 2.84e-05 TCTTCAATGA CTTTATTCATTCCCTC TAGGATTACT chr1:39852066-39852566 - 48 2.84e-05 GGGAGGTGGA TTTTATTAACTGTCTC ACAGATCAGC chr6:13500199-13500699 + 58 2.84e-05 cactgcagct tcctacttactcacat tttctctctg chr17:36125386-36125886 + 84 2.84e-05 atgaggagag ttttattgagtgacag c chr12:70242550-70243050 - 31 3.15e-05 GAAACCACTG GTGTGTTTACTCACCA TCCCCACCAT chr19:35879953-35880453 - 37 3.15e-05 CCAGGAGGGT TTCTATAGACTCCCCG AGAAGGAATG chr13:100392650-10039315 + 40 3.15e-05 GGATGAGAAG GTTGAGTGACTCACCC agggaagtga chr15:33226524-33227024 + 43 3.15e-05 caggtcaatt tttcatagactgccac cagttggagg chr4:108135508-108136008 - 82 3.15e-05 TAG CTTGAAGGACTCACAG TGGATAATTA chr1:15196733-15197233 + 79 3.48e-05 gcaaacagtg ccatgaggactcactc cctgcc chr8:15537781-15538281 + 29 3.48e-05 TAAGTGGAGC TCTTATGTACGCACAT AGGAGCTTAT chr1:164563723-164564223 + 11 3.48e-05 CTAGACCTCG TTTCGTGGACTAACAC ACTTATAACA chr12:53551855-53552355 + 39 3.48e-05 GGGAAGTTGA ATTTATGAACTGACAA TCTGCCTGCT chr1:205376713-205377213 - 4 3.48e-05 AACCAGCCAG GCACAGTGACTCACAT CTG chr5:155056836-155057336 + 83 3.84e-05 TCACTCCCTG TTTTATAGCCTCATAC AT chr3:98499983-98500483 - 69 3.84e-05 CCATACTGTG CTTCATATTCTCACCT GTCACAAGGG chr1:44275914-44276414 + 53 3.84e-05 gaggacatta aactattcactcacaa tgcagacacc chr7:116496595-116497095 + 6 3.84e-05 agagg tttagttggctcacag ttccactagc chr1:8790979-8791479 + 47 4.24e-05 ATAAACACCA ACTTGTTAACTCCCTA AGTGCTATGC chr6:13795039-13795539 + 84 4.24e-05 AAACCTCAGT CTTCATTAACTCAACA T chr11:9565948-9566448 - 14 4.24e-05 TATTGCTGTG TTTTGATGACTCAGTG GTGAGTCAAC chr12:95674593-95675093 + 23 4.24e-05 TCCAGATGAA TTTCAGAGACTCTCTG GGGACATCAC chr17:81576506-81577006 - 63 4.24e-05 AGGGAGTCTC CTGTGTTTACTGACTG TTTTCTTTGT chr13:41696555-41697055 + 40 4.24e-05 ctatctactc tattggtcactcactt tcaaactcat chr21:33971478-33971978 + 28 4.24e-05 cattacgtgt ctctgtttactcattt tatgactttc chr5:32193464-32193964 + 35 4.67e-05 CACACATTTA ATCTATTTCCTCACTT ACCGCCACCT chr3:120093620-120094120 - 5 4.67e-05 CGCTTCCCTT CTTCATTGACTCGGAA AAAA chr9:137690099-137690599 - 7 4.67e-05 TAAAGTTGAT CTCTATGTACTGACAT GGGAAG chr17:42255111-42255611 + 63 5.14e-05 ATTTTGAAAG CTTTAATAACTCCCTA GTGGTATGCA chr2:46481453-46481953 + 35 5.14e-05 ctactaccat tTTTAtgtactcatgc aattcacttc chr16:1719798-1720298 - 7 5.14e-05 GCACACACGT CTTTGTATATTCACCT GCTGGC chr6:18280023-18280523 + 82 5.65e-05 gctatccctg ccacgctaactcacag agg chr10:94045966-94046466 - 69 5.65e-05 CTCTGTATGC TTTGAAGCACTCACAC TCATTAACCA chr11:46948417-46948917 - 85 6.22e-05 . TTTTGTTTACTGTCTG TGCACCAGCA chr8:37360408-37360908 - 51 6.22e-05 GCAATTCACC CTTTATTGGCTCTCAT TTGTGATTTA chr15:63506657-63507157 - 13 6.22e-05 GTTCAATTCA GAGTGTGGACTCACAC AAAGTTGCGA chr1:17531521-17532021 - 1 6.22e-05 CAGGCAGGGG TTTTATAGACTGGCTT chr15:76935508-76936008 - 13 6.22e-05 AACAGCTTGT GCACATGAACTCACCT TCCTAAAGGA chr10:77305624-77306124 + 85 6.22e-05 ggggattcat atttattttctcccac chr1:53095266-53095766 + 29 6.22e-05 TTCACACCGC CTCGGTACACTCACAC ACTCTGCCTC chr5:73394024-73394524 + 59 6.22e-05 TCATGCTTCC ATGCattcattcactc aaaagtatct chr20:2947364-2947864 + 76 6.83e-05 CCCATGCTTG TCTCATGGACTCTTTC GTAGAGTGC chr5:116574678-116575178 - 81 6.83e-05 TCTG CCTCGCTCACTCGCAC TCACATACAC chr1:87642690-87643190 + 10 6.83e-05 CTGAGCCTG CATTATCTACTCACAG CTTTAATGAC chr15:68704347-68704847 + 45 6.83e-05 GGTTTTGTAG CTTTATTAACTGTCCT TATCAGCTGC chr17:32015532-32016032 - 63 6.83e-05 CCCCTGGCTC ATTTGTTGACTCCTTT AGAGCACAGA chr12:6323182-6323682 + 54 7.49e-05 GGGGGCAGAC TATTGTTTTCTCACCC TGGCAGAAAC chr1:45769123-45769623 + 35 7.49e-05 tggtcctctg cttcagggtctcacaa agctataaac chr19:5603421-5603921 + 29 7.49e-05 cccaaggtgc caccgtgaactcacag ggTGCCACCG chr1:234437540-234438040 - 68 8.21e-05 AGTTCTCCTG TTTCGTTGCCTGACCA GAAAGCTGGC chr5:174362448-174362948 - 16 8.21e-05 TCTCCATGTG TCTTGTTGATGCACTC TTGAGTTGTT chr1:231418083-231418583 + 14 8.21e-05 CAACCATAGA GTATGATTACTCACAT ATAAAGCTAG chr11:32890805-32891305 - 13 8.21e-05 AATAAAACCT TTATAGTCCCTCACAC CATTATGTAG chr1:151070354-151070854 + 40 8.21e-05 GCCTAGCATG CCTCGGTGACGCACTT TTCCACCTCA chr1:228861081-228861581 - 29 8.99e-05 CTTTGCTCTG CACTACTTACTCACCC AGTGCTTACT chr15:70713641-70714141 + 85 8.99e-05 CAAAACAGAG TTTCATAAAGTCACCA chr19:36070330-36070830 + 60 8.99e-05 TCCTGGCCTG CCTTTGTGACTCACTC TGGAGATCAC chr3:17730409-17730909 - 46 8.99e-05 CAACAGTAAT ATTTATTTACTCATGA TTTTATGATT chr1:235919321-235919821 + 75 9.84e-05 ttcagtggta tttagtgcactcgcaa tgtcgtgcaa chr5:137146254-137146754 - 73 9.84e-05 TTTGTCAGTC GTCCATTAAGTCACTC CTAATGAATC chr6:57089630-57090130 + 46 9.84e-05 CTTCCCAGTG CTTCGCTATCTCACAG GACCCAGCTG chr12:64656389-64656889 - 58 9.84e-05 TTATCTCTGA GTTTATAGACTCAGGC TTGTGTAAAC chr5:74019875-74020375 - 42 9.84e-05 TCTCCTCACT CTGTGTGTACTCCCTG ATGAAGTCAT chr1:64183850-64184350 + 32 1.08e-04 AGCACGTATG AATTGCTTACTCACAA ATGAGTACCA chr10:72204255-72204755 - 74 1.08e-04 CCTCTTAGTG CTTTATAGACTCTGAA ACTTCTCTCT chr10:99551130-99551630 + 17 1.08e-04 ATACCCAGGG CCTCGCTCACTGACAT GTTAGACAAC chr6:87806518-87807018 + 36 1.08e-04 CCTTATCTAA TTACGTAGAGTCACTG CTTTGTTGCA chr6:54879064-54879564 - 30 1.18e-04 ATCTCATATT CTGTATTTACCCACTC CTTTGCATCT chr1:234779010-234779510 + 34 1.18e-04 GGAGACATTT GTACATTTATTCACCG AATCCTTGAG chr10:100697041-10069754 - 63 1.18e-04 ATGTCCTTGG ATTCAATGACTTACAC TCATAAGAAT chr6:157108191-157108691 - 24 1.40e-04 GACAGGCTGG ATTCATAGACTCATGA CAGTAAAAAC chr1:225378871-225379371 - 63 1.40e-04 ACGAAGGGCT TCTTAATCACACACTC CGCGGGTGGT chr1:225975956-225976456 - 70 1.81e-04 TAGAAAGGGA TTCTGTTGAGTCGCTC AACACCAGCC chr12:98646289-98646789 + 43 1.96e-04 tgtttttgca cttcgggcattcacat tcccactctc chr1:201512858-201513358 - 12 2.13e-04 CAAACTATGG ATTTATCCACGCACAC ATTCATAAAA chr3:14822119-14822619 - 46 2.32e-04 TGAATACAGT GTATATTTACTCAATA AAAAGGTGCC chr19:2529419-2529919 + 50 2.51e-04 TTTCCGTGTC ATTTATGGACTCGATG AGAGACAAAA chr16:84724501-84725001 + 53 2.95e-04 AAAGTTTTAC TCTCGTAGTCTCGCAT AGTTGAGTGT chr1:182637787-182638287 + 72 3.46e-04 gagcaaactc atacgttgcctcatat aattgttgCA chr17:1997233-1997733 + 25 4.70e-04 gcatgtgttt acttattaactgtcgc tctctggaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYATTGACTCACWB MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:233706766-233707266 9e-09 2_[+1]_82 chr19:38713018-38713518 2.1e-08 3_[+1]_81 chr6:21748584-21749084 2.7e-08 68_[+1]_16 chr17:50694065-50694565 4.4e-08 20_[-1]_64 chr19:16165616-16166116 4.4e-08 50_[+1]_34 chr16:23213332-23213832 4.4e-08 28_[+1]_56 chr1:9163898-9164398 5.4e-08 10_[-1]_74 chr1:235734255-235734755 5.4e-08 13_[+1]_71 chr1:151542701-151543201 6.6e-08 45_[-1]_39 chr16:29273554-29274054 1e-07 17_[-1]_67 chr19:40862651-40863151 1e-07 34_[+1]_50 chr16:88247465-88247965 1e-07 61_[-1]_23 chr20:63131518-63132018 1e-07 15_[+1]_69 chr17:73268780-73269280 1.2e-07 44_[+1]_40 chr6:165846075-165846575 1.2e-07 79_[-1]_5 chr1:63753488-63753988 1.2e-07 26_[+1]_58 chr19:34129846-34130346 1.2e-07 72_[+1]_12 chr6:16168905-16169405 1.2e-07 79_[-1]_5 chr1:161026955-161027455 1.2e-07 14_[+1]_70 chr17:77237214-77237714 1.2e-07 81_[-1]_3 chr1:231411089-231411589 1.2e-07 63_[-1]_21 chr6:150419540-150420040 1.2e-07 58_[-1]_26 chr6:134673536-134674036 1.2e-07 [+1]_84 chr5:96744048-96744548 1.2e-07 44_[+1]_40 chr6:166466684-166467184 2.1e-07 45_[+1]_39 chr17:76611371-76611871 2.1e-07 42_[-1]_42 chr11:1201411-1201911 3.5e-07 [-1]_84 chr10:95237491-95237991 3.5e-07 73_[-1]_11 chr20:63057136-63057636 3.5e-07 21_[+1]_63 chr10:75358946-75359446 4.1e-07 42_[+1]_42 chr9:136579623-136580123 4.7e-07 61_[+1]_23 chr11:1155136-1155636 4.7e-07 45_[+1]_39 chr15:70507799-70508299 4.7e-07 31_[+1]_53 chr19:8240348-8240848 5.5e-07 17_[-1]_67 chr1:223707060-223707560 5.5e-07 36_[+1]_48 chr21:42261435-42261935 5.5e-07 44_[-1]_40 chr1:26097581-26098081 5.5e-07 30_[-1]_54 chr2:100004998-100005498 5.5e-07 64_[+1]_20 chr4:8301007-8301507 5.5e-07 45_[+1]_39 chr15:57914479-57914979 6.4e-07 44_[+1]_40 chr19:40979561-40980061 6.4e-07 65_[+1]_19 chr21:36097825-36098325 6.4e-07 84_[+1] chr4:8609078-8609578 6.4e-07 72_[+1]_12 chr5:14202580-14203080 6.4e-07 54_[-1]_30 chr19:33189159-33189659 6.4e-07 65_[+1]_19 chr1:22271790-22272290 7.4e-07 34_[+1]_50 chr12:107759400-10775990 8.6e-07 13_[-1]_71 chr1:85521338-85521838 9.9e-07 66_[+1]_18 chr1:145541142-145541642 9.9e-07 52_[-1]_32 chr8:95134547-95135047 9.9e-07 39_[+1]_45 chr6:85078033-85078533 1.3e-06 56_[-1]_28 chr9:130780834-130781334 1.3e-06 34_[-1]_50 chr10:132273296-13227379 1.3e-06 72_[-1]_12 chr17:51217906-51218406 1.3e-06 7_[+1]_77 chr15:36951758-36952258 1.7e-06 30_[+1]_54 chr16:66977650-66978150 1.7e-06 82_[+1]_2 chr19:40831786-40832286 2.2e-06 1_[+1]_83 chr15:51312118-51312618 2.6e-06 3_[+1]_81 chr11:34222873-34223373 2.6e-06 70_[-1]_14 chr15:67690901-67691401 2.9e-06 44_[+1]_40 chr6:85464105-85464605 2.9e-06 7_[+1]_77 chr5:107520017-107520517 2.9e-06 66_[-1]_18 chr13:113155903-11315640 2.9e-06 5_[+1]_79 chr20:62501891-62502391 3.3e-06 52_[-1]_32 chr1:153490383-153490883 3.8e-06 75_[-1]_9 chr17:79407324-79407824 4.3e-06 49_[-1]_35 chr7:44478737-44479237 4.3e-06 7_[+1]_77 chr1:226308067-226308567 4.3e-06 35_[-1]_49 chr9:132378306-132378806 4.8e-06 12_[-1]_72 chr9:132377729-132378229 4.8e-06 18_[-1]_66 chr8:101360845-101361345 4.8e-06 74_[+1]_10 chr9:132377068-132377568 4.8e-06 1_[-1]_83 chr8:71076001-71076501 4.8e-06 55_[+1]_29 chr15:67736684-67737184 5.5e-06 84_[+1] chr8:37536272-37536772 5.5e-06 6_[+1]_78 chr20:16580023-16580523 5.5e-06 76_[+1]_8 chr10:124530100-12453060 5.5e-06 73_[+1]_11 chr1:67674452-67674952 6.2e-06 54_[-1]_30 chr8:6840529-6841029 6.9e-06 9_[-1]_75 chr1:86774468-86774968 7.8e-06 81_[-1]_3 chr4:8300804-8301304 8.7e-06 22_[+1]_62 chr15:71295313-71295813 8.7e-06 31_[+1]_53 chr5:92559688-92560188 8.7e-06 11_[+1]_73 chr17:70661278-70661778 8.7e-06 48_[+1]_36 chrX:13774621-13775121 8.7e-06 10_[-1]_74 chr16:78230772-78231272 9.8e-06 3_[+1]_81 chr12:12883245-12883745 9.8e-06 9_[+1]_75 chr10:12635133-12635633 9.8e-06 39_[-1]_45 chr13:39605616-39606116 9.8e-06 46_[+1]_38 chr13:20882941-20883441 9.8e-06 44_[+1]_40 chr6:149012125-149012625 1.1e-05 24_[-1]_60 chr17:76440941-76441441 1.1e-05 15_[-1]_69 chr1:224264309-224264809 1.1e-05 9_[-1]_75 chr1:235917394-235917894 1.1e-05 39_[+1]_45 chr13:97243061-97243561 1.1e-05 31_[-1]_53 chr1:62720880-62721380 1.1e-05 60_[-1]_24 chr21:36914319-36914819 1.1e-05 73_[-1]_11 chr6:26596713-26597213 1.2e-05 57_[-1]_27 chr11:65468851-65469351 1.2e-05 56_[+1]_28 chr6:35454713-35455213 1.2e-05 57_[+1]_27 chr14:103801395-10380189 1.5e-05 39_[+1]_45 chr1:225700112-225700612 1.5e-05 38_[+1]_46 chr1:116853595-116854095 1.5e-05 16_[+1]_68 chr10:130156335-13015683 1.5e-05 2_[-1]_82 chr1:10730979-10731479 1.5e-05 9_[-1]_75 chr19:10286359-10286859 1.5e-05 26_[-1]_58 chr20:33821398-33821898 1.5e-05 49_[+1]_35 chr4:156931262-156931762 1.5e-05 22_[-1]_62 chr6:156963918-156964418 1.5e-05 29_[+1]_55 chr12:10721665-10722165 1.7e-05 21_[+1]_63 chr6:11434664-11435164 1.7e-05 72_[-1]_12 chr7:98398799-98399299 1.7e-05 57_[+1]_27 chr5:1870804-1871304 1.9e-05 11_[-1]_73 chr12:57782490-57782990 1.9e-05 58_[+1]_26 chr6:33758776-33759276 1.9e-05 18_[-1]_66 chr10:60944806-60945306 1.9e-05 53_[+1]_31 chr6:16757308-16757808 2.1e-05 43_[+1]_41 chr10:112732199-11273269 2.1e-05 75_[+1]_9 chr10:63707209-63707709 2.1e-05 83_[-1]_1 chr1:145892034-145892534 2.3e-05 26_[+1]_58 chr1:229950084-229950584 2.3e-05 69_[+1]_15 chr9:137617324-137617824 2.3e-05 17_[-1]_67 chr12:1051633-1052133 2.6e-05 39_[-1]_45 chr19:42032342-42032842 2.6e-05 77_[+1]_7 chr13:105969648-10597014 2.6e-05 20_[+1]_64 chr3:99084802-99085302 2.6e-05 73_[-1]_11 chr1:47591727-47592227 2.6e-05 23_[-1]_61 chr6:125584491-125584991 2.6e-05 3_[+1]_81 chr9:137509078-137509578 2.8e-05 30_[-1]_54 chr5:175331233-175331733 2.8e-05 50_[-1]_34 chr5:139050962-139051462 2.8e-05 48_[+1]_36 chr5:139247815-139248315 2.8e-05 17_[-1]_67 chr9:108933867-108934367 2.8e-05 20_[-1]_64 chr6:56652877-56653377 2.8e-05 62_[-1]_22 chr1:39852066-39852566 2.8e-05 47_[-1]_37 chr6:13500199-13500699 2.8e-05 57_[+1]_27 chr17:36125386-36125886 2.8e-05 83_[+1]_1 chr12:70242550-70243050 3.1e-05 30_[-1]_54 chr19:35879953-35880453 3.1e-05 36_[-1]_48 chr13:100392650-10039315 3.1e-05 39_[+1]_45 chr15:33226524-33227024 3.1e-05 42_[+1]_42 chr4:108135508-108136008 3.1e-05 81_[-1]_3 chr1:15196733-15197233 3.5e-05 78_[+1]_6 chr8:15537781-15538281 3.5e-05 28_[+1]_56 chr1:164563723-164564223 3.5e-05 10_[+1]_74 chr12:53551855-53552355 3.5e-05 38_[+1]_46 chr1:205376713-205377213 3.5e-05 3_[-1]_81 chr5:155056836-155057336 3.8e-05 82_[+1]_2 chr3:98499983-98500483 3.8e-05 68_[-1]_16 chr1:44275914-44276414 3.8e-05 52_[+1]_32 chr7:116496595-116497095 3.8e-05 5_[+1]_79 chr1:8790979-8791479 4.2e-05 46_[+1]_38 chr6:13795039-13795539 4.2e-05 83_[+1]_1 chr11:9565948-9566448 4.2e-05 13_[-1]_71 chr12:95674593-95675093 4.2e-05 22_[+1]_62 chr17:81576506-81577006 4.2e-05 62_[-1]_22 chr13:41696555-41697055 4.2e-05 39_[+1]_45 chr21:33971478-33971978 4.2e-05 27_[+1]_57 chr5:32193464-32193964 4.7e-05 34_[+1]_50 chr3:120093620-120094120 4.7e-05 4_[-1]_80 chr9:137690099-137690599 4.7e-05 6_[-1]_78 chr17:42255111-42255611 5.1e-05 62_[+1]_22 chr2:46481453-46481953 5.1e-05 34_[+1]_50 chr16:1719798-1720298 5.1e-05 6_[-1]_78 chr6:18280023-18280523 5.7e-05 81_[+1]_3 chr10:94045966-94046466 5.7e-05 68_[-1]_16 chr11:46948417-46948917 6.2e-05 84_[-1] chr8:37360408-37360908 6.2e-05 50_[-1]_34 chr15:63506657-63507157 6.2e-05 12_[-1]_72 chr1:17531521-17532021 6.2e-05 [-1]_84 chr15:76935508-76936008 6.2e-05 12_[-1]_72 chr10:77305624-77306124 6.2e-05 84_[+1] chr1:53095266-53095766 6.2e-05 28_[+1]_56 chr5:73394024-73394524 6.2e-05 58_[+1]_26 chr20:2947364-2947864 6.8e-05 75_[+1]_9 chr5:116574678-116575178 6.8e-05 80_[-1]_4 chr1:87642690-87643190 6.8e-05 9_[+1]_75 chr15:68704347-68704847 6.8e-05 44_[+1]_40 chr17:32015532-32016032 6.8e-05 62_[-1]_22 chr12:6323182-6323682 7.5e-05 53_[+1]_31 chr1:45769123-45769623 7.5e-05 34_[+1]_50 chr19:5603421-5603921 7.5e-05 28_[+1]_56 chr1:234437540-234438040 8.2e-05 67_[-1]_17 chr5:174362448-174362948 8.2e-05 15_[-1]_69 chr1:231418083-231418583 8.2e-05 13_[+1]_71 chr11:32890805-32891305 8.2e-05 12_[-1]_72 chr1:151070354-151070854 8.2e-05 39_[+1]_45 chr1:228861081-228861581 9e-05 28_[-1]_56 chr15:70713641-70714141 9e-05 84_[+1] chr19:36070330-36070830 9e-05 59_[+1]_25 chr3:17730409-17730909 9e-05 45_[-1]_39 chr1:235919321-235919821 9.8e-05 74_[+1]_10 chr5:137146254-137146754 9.8e-05 72_[-1]_12 chr6:57089630-57090130 9.8e-05 45_[+1]_39 chr12:64656389-64656889 9.8e-05 57_[-1]_27 chr5:74019875-74020375 9.8e-05 41_[-1]_43 chr1:64183850-64184350 0.00011 31_[+1]_53 chr10:72204255-72204755 0.00011 73_[-1]_11 chr10:99551130-99551630 0.00011 16_[+1]_68 chr6:87806518-87807018 0.00011 35_[+1]_49 chr6:54879064-54879564 0.00012 29_[-1]_55 chr1:234779010-234779510 0.00012 33_[+1]_51 chr10:100697041-10069754 0.00012 62_[-1]_22 chr6:157108191-157108691 0.00014 23_[-1]_61 chr1:225378871-225379371 0.00014 62_[-1]_22 chr1:225975956-225976456 0.00018 69_[-1]_15 chr12:98646289-98646789 0.0002 42_[+1]_42 chr1:201512858-201513358 0.00021 11_[-1]_73 chr3:14822119-14822619 0.00023 45_[-1]_39 chr19:2529419-2529919 0.00025 49_[+1]_35 chr16:84724501-84725001 0.0003 52_[+1]_32 chr1:182637787-182638287 0.00035 71_[+1]_13 chr17:1997233-1997733 0.00047 24_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYATTGACTCACWB MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTYATTGACTCACWB width=16 seqs=213 chr1:233706766-233707266 ( 3) TTTCATTGACTCACAG 1 chr19:38713018-38713518 ( 4) CTTTATTCACTCACTC 1 chr6:21748584-21749084 ( 69) TTTTATTGACTCACTA 1 chr17:50694065-50694565 ( 21) CTTCATGGACTCACTC 1 chr19:16165616-16166116 ( 51) TTTCATTCACTCACTC 1 chr16:23213332-23213832 ( 29) TTTCATTCACTCACTC 1 chr1:9163898-9164398 ( 11) TTTCGTTGACTCACCC 1 chr1:235734255-235734755 ( 14) TTTCATTGACTCACCT 1 chr1:151542701-151543201 ( 46) ATTTATTGACTCACTT 1 chr16:29273554-29274054 ( 18) ACTCATTGACTCACTC 1 chr19:40862651-40863151 ( 35) TTTTATGGACTCACAT 1 chr16:88247465-88247965 ( 62) ACTCATTGACTCACTC 1 chr20:63131518-63132018 ( 16) CTTAATTGACTCACAG 1 chr17:73268780-73269280 ( 45) ATTTATTCACTCACTC 1 chr6:165846075-165846575 ( 80) CTTTATTTACTCACCG 1 chr1:63753488-63753988 ( 27) TTTAATTGACTCACAG 1 chr19:34129846-34130346 ( 73) TTTAATTGACTCACAG 1 chr6:16168905-16169405 ( 80) TTTAATTGACTCACAG 1 chr1:161026955-161027455 ( 15) TTTAATTGACTCACAG 1 chr17:77237214-77237714 ( 82) TTTAATTGACTCACAG 1 chr1:231411089-231411589 ( 64) TTTAATTGACTCACAG 1 chr6:150419540-150420040 ( 59) TTTAATTGACTCACAG 1 chr6:134673536-134674036 ( 1) TTTCATTTACTCACAT 1 chr5:96744048-96744548 ( 45) TTTAATTGACTCACAG 1 chr6:166466684-166467184 ( 46) ACTTGTTGACTCACTC 1 chr17:76611371-76611871 ( 43) CCTCATAGACTCACTC 1 chr11:1201411-1201911 ( 1) ACTTATTCACTCACTC 1 chr10:95237491-95237991 ( 74) GTTAATTGACTCACAC 1 chr20:63057136-63057636 ( 22) ATTTGTTTACTCACTC 1 chr10:75358946-75359446 ( 43) GTTAATTGACTCACTC 1 chr9:136579623-136580123 ( 62) ACTCATTCACTCACTC 1 chr11:1155136-1155636 ( 46) ACTCATTTACTCACTC 1 chr15:70507799-70508299 ( 32) TCTTGTTTACTCACAG 1 chr19:8240348-8240848 ( 18) ATACATTGACTCACTC 1 chr1:223707060-223707560 ( 37) TCTCATTTACTCACAA 1 chr21:42261435-42261935 ( 45) TCTTGTTCACTCACCC 1 chr1:26097581-26098081 ( 31) CTTTATAAACTCACAG 1 chr2:100004998-100005498 ( 65) TTTTATGAACTCACTG 1 chr4:8301007-8301507 ( 46) CTTTATTGATTCACAC 1 chr15:57914479-57914979 ( 45) CTTCGTTTACTCACCT 1 chr19:40979561-40980061 ( 66) TTTAATGGACTCACAG 1 chr21:36097825-36098325 ( 85) TTTAATGGACTCACAG 1 chr4:8609078-8609578 ( 73) ATTCATTCACTCACAA 1 chr5:14202580-14203080 ( 55) TTTAATGGACTCACAG 1 chr19:33189159-33189659 ( 66) TTTAATGGACTCACAG 1 chr1:22271790-22272290 ( 35) GCTCATTTACTCACTC 1 chr12:107759400-10775990 ( 14) TTTTAGTGACTCACAA 1 chr1:85521338-85521838 ( 67) CTCCATAGACTCACTC 1 chr1:145541142-145541642 ( 53) CTCCATAGACTCACTC 1 chr8:95134547-95135047 ( 40) ATTCATAGACTCACAA 1 chr6:85078033-85078533 ( 57) CTTTATTGACTCAGAG 1 chr9:130780834-130781334 ( 35) CTGCGTTGACTCACTG 1 chr10:132273296-13227379 ( 73) ATTCATTCACTCACCA 1 chr17:51217906-51218406 ( 8) TTCTATTTACTCACTT 1 chr15:36951758-36952258 ( 31) CTTTGGTCACTCACAC 1 chr16:66977650-66978150 ( 83) CCTTAGTTACTCACAC 1 chr19:40831786-40832286 ( 2) TTTTATGGACTCACGT 1 chr15:51312118-51312618 ( 4) CTATGTTAACTCACCC 1 chr11:34222873-34223373 ( 71) CCTCGTAAACTCACTC 1 chr15:67690901-67691401 ( 45) CTTTATTCACTCATCC 1 chr6:85464105-85464605 ( 8) CTTTACTAACTCACTT 1 chr5:107520017-107520517 ( 67) TCTTATTGATTCACTG 1 chr13:113155903-11315640 ( 6) TTTAATGAACTCACAG 1 chr20:62501891-62502391 ( 53) TTTGGTTGACTCACCG 1 chr1:153490383-153490883 ( 76) TTTCAATCACTCACTT 1 chr17:79407324-79407824 ( 50) ATTTATTGTCTCACAT 1 chr7:44478737-44479237 ( 8) TTTAATTGACTCGCAG 1 chr1:226308067-226308567 ( 36) CCATGTTTACTCACCC 1 chr9:132378306-132378806 ( 13) CCACATGCACTCACAC 1 chr9:132377729-132378229 ( 19) CCACATGCACTCACAC 1 chr8:101360845-101361345 ( 75) CTTTATTGACTCAATT 1 chr9:132377068-132377568 ( 2) CCACATGCACTCACAC 1 chr8:71076001-71076501 ( 56) ATTTATTGTCTCACTT 1 chr15:67736684-67737184 ( 85) ATTAAATGACTCACTC 1 chr8:37536272-37536772 ( 7) CTTTATTTCCTCACCT 1 chr20:16580023-16580523 ( 77) CCCTGTTAACTCACCC 1 chr10:124530100-12453060 ( 74) CTACATACACTCACCC 1 chr1:67674452-67674952 ( 55) CATTATGAACTCACAG 1 chr8:6840529-6841029 ( 10) TTTCATTCATTCACTT 1 chr1:86774468-86774968 ( 82) TTCTATTGACTCTCTT 1 chr4:8300804-8301304 ( 23) TATTATTGATTCACAC 1 chr15:71295313-71295813 ( 32) CTGTATGAACTCACTT 1 chr5:92559688-92560188 ( 12) TTTTGTAGACTCGCCC 1 chr17:70661278-70661778 ( 49) TTTTATGGACTCTCCA 1 chrX:13774621-13775121 ( 11) TTTAGTAAACTCACTG 1 chr16:78230772-78231272 ( 4) CCTTATTTACGCACTG 1 chr12:12883245-12883745 ( 10) CTTTGTTTACTGACCT 1 chr10:12635133-12635633 ( 40) TTGCACTGACTCACTG 1 chr13:39605616-39606116 ( 47) TCTCATTGAGTCACAA 1 chr13:20882941-20883441 ( 45) CTTCGTTAACTCTCTT 1 chr6:149012125-149012625 ( 25) TTTTATTGCCTCATAC 1 chr17:76440941-76441441 ( 16) GCATGTTAACTCACAC 1 chr1:224264309-224264809 ( 10) ATGCAGTGACTCACAC 1 chr1:235917394-235917894 ( 40) CCACATTGACTCATTC 1 chr13:97243061-97243561 ( 32) GTTTGTTGACTGACTA 1 chr1:62720880-62721380 ( 61) AATTATAGACTCACTA 1 chr21:36914319-36914819 ( 74) ACTTATTCACTCCCTG 1 chr6:26596713-26597213 ( 58) CCATGTTGACTGACAC 1 chr11:65468851-65469351 ( 57) TTTCATAGACTCATCT 1 chr6:35454713-35455213 ( 58) TTTTAGGAACTCACAA 1 chr14:103801395-10380189 ( 40) CCTCAATGACTCCCTC 1 chr1:225700112-225700612 ( 39) TTTTACACACTCACTA 1 chr1:116853595-116854095 ( 17) GCCTGTTGACTCACCA 1 chr10:130156335-13015683 ( 3) ACGTATAGACTCACTT 1 chr1:10730979-10731479 ( 10) CTTTGTAACCTCACAC 1 chr19:10286359-10286859 ( 27) CTTTATTAACTAACAC 1 chr20:33821398-33821898 ( 50) GTATGGTGACTCACAC 1 chr4:156931262-156931762 ( 23) CACTGTTGACTCACCT 1 chr6:156963918-156964418 ( 30) CCTTATTAACTCATCT 1 chr12:10721665-10722165 ( 22) GTTTAAGAACTCACAC 1 chr6:11434664-11435164 ( 73) TTTTGTTAACTCCCCA 1 chr7:98398799-98399299 ( 58) TTTTATTTACACACTT 1 chr5:1870804-1871304 ( 12) ACGCATGCACTCACAC 1 chr12:57782490-57782990 ( 59) GTTTGTTGCCTCACCA 1 chr6:33758776-33759276 ( 19) TTTTATTAACTCAGCA 1 chr10:60944806-60945306 ( 54) TTTCATGCATTCACAT 1 chr6:16757308-16757808 ( 44) CCACATAAACTCACAA 1 chr10:112732199-11273269 ( 76) GTTTAATTACTCACCA 1 chr10:63707209-63707709 ( 84) CTAAACTGACTCACAT 1 chr1:145892034-145892534 ( 27) TCCTGTTGACTCTCCC 1 chr1:229950084-229950584 ( 70) TTTTGTATACTCATAG 1 chr9:137617324-137617824 ( 18) CTTCGTTGACTTACTT 1 chr12:1051633-1052133 ( 40) CTTTATTAATTCACGC 1 chr19:42032342-42032842 ( 78) CCTTATATCCTCACTT 1 chr13:105969648-10597014 ( 21) TCTGATAAACTCACAG 1 chr3:99084802-99085302 ( 74) TACTATAGACTCACAA 1 chr1:47591727-47592227 ( 24) TCTCATAGACACACAC 1 chr6:125584491-125584991 ( 4) CTTTGTTTACTCAGCA 1 chr9:137509078-137509578 ( 31) CTAAACTCACTCACAC 1 chr5:175331233-175331733 ( 51) GTTTGTTTACTCTCTA 1 chr5:139050962-139051462 ( 49) TCGCATAAACTCACTT 1 chr5:139247815-139248315 ( 18) TATCAATTACTCACTG 1 chr9:108933867-108934367 ( 21) CCTAGTTGACGCACCC 1 chr6:56652877-56653377 ( 63) CTTTATTCATTCCCTC 1 chr1:39852066-39852566 ( 48) TTTTATTAACTGTCTC 1 chr6:13500199-13500699 ( 58) TCCTACTTACTCACAT 1 chr17:36125386-36125886 ( 84) TTTTATTGAGTGACAG 1 chr12:70242550-70243050 ( 31) GTGTGTTTACTCACCA 1 chr19:35879953-35880453 ( 37) TTCTATAGACTCCCCG 1 chr13:100392650-10039315 ( 40) GTTGAGTGACTCACCC 1 chr15:33226524-33227024 ( 43) TTTCATAGACTGCCAC 1 chr4:108135508-108136008 ( 82) CTTGAAGGACTCACAG 1 chr1:15196733-15197233 ( 79) CCATGAGGACTCACTC 1 chr8:15537781-15538281 ( 29) TCTTATGTACGCACAT 1 chr1:164563723-164564223 ( 11) TTTCGTGGACTAACAC 1 chr12:53551855-53552355 ( 39) ATTTATGAACTGACAA 1 chr1:205376713-205377213 ( 4) GCACAGTGACTCACAT 1 chr5:155056836-155057336 ( 83) TTTTATAGCCTCATAC 1 chr3:98499983-98500483 ( 69) CTTCATATTCTCACCT 1 chr1:44275914-44276414 ( 53) AACTATTCACTCACAA 1 chr7:116496595-116497095 ( 6) TTTAGTTGGCTCACAG 1 chr1:8790979-8791479 ( 47) ACTTGTTAACTCCCTA 1 chr6:13795039-13795539 ( 84) CTTCATTAACTCAACA 1 chr11:9565948-9566448 ( 14) TTTTGATGACTCAGTG 1 chr12:95674593-95675093 ( 23) TTTCAGAGACTCTCTG 1 chr17:81576506-81577006 ( 63) CTGTGTTTACTGACTG 1 chr13:41696555-41697055 ( 40) TATTGGTCACTCACTT 1 chr21:33971478-33971978 ( 28) CTCTGTTTACTCATTT 1 chr5:32193464-32193964 ( 35) ATCTATTTCCTCACTT 1 chr3:120093620-120094120 ( 5) CTTCATTGACTCGGAA 1 chr9:137690099-137690599 ( 7) CTCTATGTACTGACAT 1 chr17:42255111-42255611 ( 63) CTTTAATAACTCCCTA 1 chr2:46481453-46481953 ( 35) TTTTATGTACTCATGC 1 chr16:1719798-1720298 ( 7) CTTTGTATATTCACCT 1 chr6:18280023-18280523 ( 82) CCACGCTAACTCACAG 1 chr10:94045966-94046466 ( 69) TTTGAAGCACTCACAC 1 chr11:46948417-46948917 ( 85) TTTTGTTTACTGTCTG 1 chr8:37360408-37360908 ( 51) CTTTATTGGCTCTCAT 1 chr15:63506657-63507157 ( 13) GAGTGTGGACTCACAC 1 chr1:17531521-17532021 ( 1) TTTTATAGACTGGCTT 1 chr15:76935508-76936008 ( 13) GCACATGAACTCACCT 1 chr10:77305624-77306124 ( 85) ATTTATTTTCTCCCAC 1 chr1:53095266-53095766 ( 29) CTCGGTACACTCACAC 1 chr5:73394024-73394524 ( 59) ATGCATTCATTCACTC 1 chr20:2947364-2947864 ( 76) TCTCATGGACTCTTTC 1 chr5:116574678-116575178 ( 81) CCTCGCTCACTCGCAC 1 chr1:87642690-87643190 ( 10) CATTATCTACTCACAG 1 chr15:68704347-68704847 ( 45) CTTTATTAACTGTCCT 1 chr17:32015532-32016032 ( 63) ATTTGTTGACTCCTTT 1 chr12:6323182-6323682 ( 54) TATTGTTTTCTCACCC 1 chr1:45769123-45769623 ( 35) CTTCAGGGTCTCACAA 1 chr19:5603421-5603921 ( 29) CACCGTGAACTCACAG 1 chr1:234437540-234438040 ( 68) TTTCGTTGCCTGACCA 1 chr5:174362448-174362948 ( 16) TCTTGTTGATGCACTC 1 chr1:231418083-231418583 ( 14) GTATGATTACTCACAT 1 chr11:32890805-32891305 ( 13) TTATAGTCCCTCACAC 1 chr1:151070354-151070854 ( 40) CCTCGGTGACGCACTT 1 chr1:228861081-228861581 ( 29) CACTACTTACTCACCC 1 chr15:70713641-70714141 ( 85) TTTCATAAAGTCACCA 1 chr19:36070330-36070830 ( 60) CCTTTGTGACTCACTC 1 chr3:17730409-17730909 ( 46) ATTTATTTACTCATGA 1 chr1:235919321-235919821 ( 75) TTTAGTGCACTCGCAA 1 chr5:137146254-137146754 ( 73) GTCCATTAAGTCACTC 1 chr6:57089630-57090130 ( 46) CTTCGCTATCTCACAG 1 chr12:64656389-64656889 ( 58) GTTTATAGACTCAGGC 1 chr5:74019875-74020375 ( 42) CTGTGTGTACTCCCTG 1 chr1:64183850-64184350 ( 32) AATTGCTTACTCACAA 1 chr10:72204255-72204755 ( 74) CTTTATAGACTCTGAA 1 chr10:99551130-99551630 ( 17) CCTCGCTCACTGACAT 1 chr6:87806518-87807018 ( 36) TTACGTAGAGTCACTG 1 chr6:54879064-54879564 ( 30) CTGTATTTACCCACTC 1 chr1:234779010-234779510 ( 34) GTACATTTATTCACCG 1 chr10:100697041-10069754 ( 63) ATTCAATGACTTACAC 1 chr6:157108191-157108691 ( 24) ATTCATAGACTCATGA 1 chr1:225378871-225379371 ( 63) TCTTAATCACACACTC 1 chr1:225975956-225976456 ( 70) TTCTGTTGAGTCGCTC 1 chr12:98646289-98646789 ( 43) CTTCGGGCATTCACAT 1 chr1:201512858-201513358 ( 12) ATTTATCCACGCACAC 1 chr3:14822119-14822619 ( 46) GTATATTTACTCAATA 1 chr19:2529419-2529919 ( 50) ATTTATGGACTCGATG 1 chr16:84724501-84725001 ( 53) TCTCGTAGTCTCGCAT 1 chr1:182637787-182638287 ( 72) ATACGTTGCCTCATAT 1 chr17:1997233-1997733 ( 25) ACTTATTAACTGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYATTGACTCACWB MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 9.08163 E= 3.6e-178 -72 65 -116 46 -209 17 -1438 130 -131 -123 -186 139 -131 57 -297 93 132 -1438 44 -589 -209 -197 -165 153 -76 -455 -39 124 -72 -43 107 -47 170 -223 -455 -289 -1438 205 -297 -231 -431 -555 -297 177 -489 204 -165 -489 160 -210 -239 -219 -389 200 -275 -209 58 -23 -275 37 -68 77 3 -31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYATTGACTCACWB MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 213 E= 3.6e-178 0.169014 0.347418 0.098592 0.384977 0.065728 0.248826 0.000000 0.685446 0.112676 0.093897 0.061033 0.732394 0.112676 0.328638 0.028169 0.530516 0.694836 0.000000 0.300469 0.004695 0.065728 0.056338 0.070423 0.807512 0.164319 0.009390 0.169014 0.657277 0.169014 0.164319 0.464789 0.201878 0.906103 0.046948 0.009390 0.037559 0.000000 0.915493 0.028169 0.056338 0.014085 0.004695 0.028169 0.953052 0.009390 0.910798 0.070423 0.009390 0.845070 0.051643 0.042254 0.061033 0.018779 0.882629 0.032864 0.065728 0.417840 0.187793 0.032864 0.361502 0.173709 0.375587 0.225352 0.225352 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYATTGACTCACWB MEME-1 regular expression -------------------------------------------------------------------------------- [TC][TC]T[TC][AG]TT[GT]ACTCAC[AT][CGT] -------------------------------------------------------------------------------- Time 352.42 secs. ******************************************************************************** ******************************************************************************** MOTIF CACATGGCTGGGGAGGCCTC MEME-2 width = 20 sites = 22 llr = 489 E-value = 3.7e-084 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACATGGCTGGGGAGGCCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8:8:::::11:1a:::::: pos.-specific C 9:91:::a1:::::::aa1a probability G :2:1:9a::8999:9a:::: matrix T ::::9:::9:::::1:::9: bits 2.2 * * 2.0 ** *** * 1.7 ** * * *** * 1.5 * **** ********** Relative 1.3 * * **************** Entropy 1.1 * * **************** (32.1 bits) 0.9 ******************** 0.7 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel CACATGGCTGGGGAGGCCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATGGCTGGGGAGGCCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr1:15175413-15175913 + 8 3.13e-13 acagttc cacatggctggggaggcctc actgtcatgg chr17:77237214-77237714 - 59 3.13e-13 CTCACAGTTC CACATGGCTGGGGAGGCCTC ATGAGACTTA chr1:231411089-231411589 - 41 3.13e-13 CTCACAGTTC CACATGGCTGGGGAGGCCTC AGGAAACTTA chr1:6845712-6846212 + 3 3.13e-13 tc cacatggctggggaggcctc acaatcatgg chr13:113155903-11315640 + 25 3.13e-13 ctcacagttc cacatggctggggaggcctc aggaaacata chr6:111095558-111096058 - 63 2.34e-12 CTCACAGTTC CACATGGCTAGGGAGGCCTC ACAATCATGG chr6:158391884-158392384 + 14 2.34e-12 cttaccattc cacatggctagggaggcctc acaatcacag chr10:11778939-11779439 + 12 2.34e-12 ctcacagttc cacatggccggggaggcctc acaatcatgg chr13:100173675-10017417 - 75 2.34e-12 CAGCTC CACATGGCTGGGGAGGCCCC ACAATCATGG chr11:63776296-63776796 - 79 2.74e-12 TC CACATGGCTGGGGATGCCTC AAAATCATGG chr1:233706766-233707266 + 22 3.13e-12 ctcacagttc cacatggctgaggaggcctc aggaaactta chr20:63131518-63132018 + 35 3.13e-12 ctcacagttc cacatggctgaggaggcctc aggaaactta chr7:44478737-44479237 + 27 1.92e-11 ctcgcagttc agcatggctggggaggcctc agaaaactta chr6:150419540-150420040 - 36 3.22e-11 CTCACAGTTC CATGTGGCTGGGGAGGCCTC ACAATCATGG chr5:96744048-96744548 + 64 3.48e-11 ctcacagttc ctcatggctagggaggcctc ataattacgg chr1:161026955-161027455 + 34 8.12e-11 ctcacagttc cacatggctggggatgtctc acaatcatgg chr1:63753488-63753988 + 46 1.78e-10 ctcacagttc tgcatggctgggaaggcctc aggaaacgta chr5:14202580-14203080 - 32 5.46e-10 CTCACAGCTC CACGTAGCTGGAGAGGCCTC ACAGTTATGG chr6:16168905-16169405 - 57 1.96e-09 CTCACAGCTG CAAATGGCTGGGGAGACATC AGGAAACTTA chr6:87472544-87473044 + 40 5.75e-09 TGTCACCTAG GACGCGGCCGGGAAGGCCTC CCTTCGATCC chr20:62501891-62502391 - 30 2.23e-08 CTCACCGTTC CGCCTGGTTGGGAAAGCCCC AGGAAACTTA chr19:6000406-6000906 + 79 6.96e-08 cttggccttc cgccatgcttgtgaggcctc cc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATGGCTGGGGAGGCCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:15175413-15175913 3.1e-13 7_[+2]_73 chr17:77237214-77237714 3.1e-13 58_[-2]_22 chr1:231411089-231411589 3.1e-13 40_[-2]_40 chr1:6845712-6846212 3.1e-13 2_[+2]_78 chr13:113155903-11315640 3.1e-13 24_[+2]_56 chr6:111095558-111096058 2.3e-12 62_[-2]_18 chr6:158391884-158392384 2.3e-12 13_[+2]_67 chr10:11778939-11779439 2.3e-12 11_[+2]_69 chr13:100173675-10017417 2.3e-12 74_[-2]_6 chr11:63776296-63776796 2.7e-12 78_[-2]_2 chr1:233706766-233707266 3.1e-12 21_[+2]_59 chr20:63131518-63132018 3.1e-12 34_[+2]_46 chr7:44478737-44479237 1.9e-11 26_[+2]_54 chr6:150419540-150420040 3.2e-11 35_[-2]_45 chr5:96744048-96744548 3.5e-11 63_[+2]_17 chr1:161026955-161027455 8.1e-11 33_[+2]_47 chr1:63753488-63753988 1.8e-10 45_[+2]_35 chr5:14202580-14203080 5.5e-10 31_[-2]_49 chr6:16168905-16169405 2e-09 56_[-2]_24 chr6:87472544-87473044 5.8e-09 39_[+2]_41 chr20:62501891-62502391 2.2e-08 29_[-2]_51 chr19:6000406-6000906 7e-08 78_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATGGCTGGGGAGGCCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACATGGCTGGGGAGGCCTC width=20 seqs=22 chr1:15175413-15175913 ( 8) CACATGGCTGGGGAGGCCTC 1 chr17:77237214-77237714 ( 59) CACATGGCTGGGGAGGCCTC 1 chr1:231411089-231411589 ( 41) CACATGGCTGGGGAGGCCTC 1 chr1:6845712-6846212 ( 3) CACATGGCTGGGGAGGCCTC 1 chr13:113155903-11315640 ( 25) CACATGGCTGGGGAGGCCTC 1 chr6:111095558-111096058 ( 63) CACATGGCTAGGGAGGCCTC 1 chr6:158391884-158392384 ( 14) CACATGGCTAGGGAGGCCTC 1 chr10:11778939-11779439 ( 12) CACATGGCCGGGGAGGCCTC 1 chr13:100173675-10017417 ( 75) CACATGGCTGGGGAGGCCCC 1 chr11:63776296-63776796 ( 79) CACATGGCTGGGGATGCCTC 1 chr1:233706766-233707266 ( 22) CACATGGCTGAGGAGGCCTC 1 chr20:63131518-63132018 ( 35) CACATGGCTGAGGAGGCCTC 1 chr7:44478737-44479237 ( 27) AGCATGGCTGGGGAGGCCTC 1 chr6:150419540-150420040 ( 36) CATGTGGCTGGGGAGGCCTC 1 chr5:96744048-96744548 ( 64) CTCATGGCTAGGGAGGCCTC 1 chr1:161026955-161027455 ( 34) CACATGGCTGGGGATGTCTC 1 chr1:63753488-63753988 ( 46) TGCATGGCTGGGAAGGCCTC 1 chr5:14202580-14203080 ( 32) CACGTAGCTGGAGAGGCCTC 1 chr6:16168905-16169405 ( 57) CAAATGGCTGGGGAGACATC 1 chr6:87472544-87473044 ( 40) GACGCGGCCGGGAAGGCCTC 1 chr20:62501891-62502391 ( 30) CGCCTGGTTGGGAAAGCCCC 1 chr19:6000406-6000906 ( 79) CGCCATGCTTGTGAGGCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATGGCTGGGGAGGCCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48519 bayes= 12.133 E= 3.7e-084 -261 197 -228 -261 147 -1110 -28 -261 -261 204 -1110 -261 147 -128 -70 -1110 -261 -228 -1110 170 -261 -1110 204 -261 -1110 -1110 218 -1110 -1110 211 -1110 -261 -1110 -128 -1110 170 -103 -1110 189 -261 -162 -1110 204 -1110 -261 -1110 204 -261 -103 -1110 197 -1110 184 -1110 -1110 -1110 -261 -1110 197 -162 -261 -1110 211 -1110 -1110 211 -1110 -261 -261 211 -1110 -1110 -1110 -128 -1110 170 -1110 218 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATGGCTGGGGAGGCCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 22 E= 3.7e-084 0.045455 0.863636 0.045455 0.045455 0.772727 0.000000 0.181818 0.045455 0.045455 0.909091 0.000000 0.045455 0.772727 0.090909 0.136364 0.000000 0.045455 0.045455 0.000000 0.909091 0.045455 0.000000 0.909091 0.045455 0.000000 0.000000 1.000000 0.000000 0.000000 0.954545 0.000000 0.045455 0.000000 0.090909 0.000000 0.909091 0.136364 0.000000 0.818182 0.045455 0.090909 0.000000 0.909091 0.000000 0.045455 0.000000 0.909091 0.045455 0.136364 0.000000 0.863636 0.000000 1.000000 0.000000 0.000000 0.000000 0.045455 0.000000 0.863636 0.090909 0.045455 0.000000 0.954545 0.000000 0.000000 0.954545 0.000000 0.045455 0.045455 0.954545 0.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACATGGCTGGGGAGGCCTC MEME-2 regular expression -------------------------------------------------------------------------------- CACATGGCTGGGGAGGCCTC -------------------------------------------------------------------------------- Time 666.07 secs. ******************************************************************************** ******************************************************************************** MOTIF AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 width = 44 sites = 10 llr = 453 E-value = 1.3e-077 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 99118229::aaa:::9:4::1:819::1:1:1a22:99:9:9: pos.-specific C 1::11:11:8:::::915::711281:::5:19:::a:1:::11 probability G :168186:a::::a61::5:1::::::a9:99::88:1:a:a:9 matrix T ::3:::1::2::::4::51a289:1:a::5::::::::::1::: bits 2.2 * * * * * * 2.0 * * * * * * 1.7 * **** * * *** **** * * * * 1.5 * **** * * *** **** * * * * Relative 1.3 ** * * ******* ** * * **** ************** Entropy 1.1 ** *** *********** * ********************** (65.3 bits) 0.9 ** *** *********** ************************* 0.7 ****** ************************************* 0.4 ******************************************** 0.2 ******************************************** 0.0 -------------------------------------------- Multilevel AAGGAGGAGCAAAGGCACGTCTTACATGGCGGCAGGCAAGAGAG consensus T AA T T TA T C T AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------- chr10:11778939-11779439 + 51 5.59e-26 gcagaaggca aaggagaagcaaaggcatgtcttacatggcggcaggcaagagag cttgtg chr1:224621783-224622283 - 9 1.01e-25 GCAGAAGGTG AAGGAGGAGCAAAGGCATGTCTTACATGGCGGCAAGCAAGAGAG CATGTGCA chr19:6000406-6000906 - 28 1.36e-24 GCGGAAGGCC AAGGAAGAGCAAAGGCACATCTTCCATGGCGGCAGGCAAGAGAG CATGTGCAGG chr1:15175413-15175913 + 47 6.90e-24 gcagaaggtg aatgaggagcaaagtcatgtcttacatggtggcaggcaagagac agagcttgtg chr1:162108772-162109272 + 34 3.92e-23 gcgtaaggca aaggagaagcaaaggcacatcttctatggtggcaggcaagagag cttgtgcagg chr6:136248249-136248749 - 27 6.16e-23 GCTGAAGGCA AATGAGTAGCAAAGTCACATTTTACATGGTGGCAGGCAAGAGAG CTTGTGCAGG chr22:43085322-43085822 - 41 6.89e-23 GCGGAAGATG AAGGAAGAGCAAAGGCACATTATACATGGTGGCAGGCAAGAGAG CTTGTGCAGG chr11:63776296-63776796 - 16 6.89e-23 GCAGAAGGGG AATAAGGAGCAAAGTCATGTCTTACATGGTGGCAGACAAGAGAG CTTGTGCAGA chr13:100173675-10017417 - 12 8.61e-23 GTGGCAAGTG AAGGCGGAGTAAAGGCATGTCTTACATGGCAGCAGGCAAGAGAG CTTGTGCAGG chr6:26596713-26597213 - 6 4.90e-12 ACGAGCGGCA CGACGGCCGTAAAGTGCCTTGCCAACTGACGCAAAACGCGTGCG ACGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:11778939-11779439 5.6e-26 50_[+3]_6 chr1:224621783-224622283 1e-25 8_[-3]_48 chr19:6000406-6000906 1.4e-24 27_[-3]_29 chr1:15175413-15175913 6.9e-24 46_[+3]_10 chr1:162108772-162109272 3.9e-23 33_[+3]_23 chr6:136248249-136248749 6.2e-23 26_[-3]_30 chr22:43085322-43085822 6.9e-23 40_[-3]_16 chr11:63776296-63776796 6.9e-23 15_[-3]_41 chr13:100173675-10017417 8.6e-23 11_[-3]_45 chr6:26596713-26597213 4.9e-12 5_[-3]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG width=44 seqs=10 chr10:11778939-11779439 ( 51) AAGGAGAAGCAAAGGCATGTCTTACATGGCGGCAGGCAAGAGAG 1 chr1:224621783-224622283 ( 9) AAGGAGGAGCAAAGGCATGTCTTACATGGCGGCAAGCAAGAGAG 1 chr19:6000406-6000906 ( 28) AAGGAAGAGCAAAGGCACATCTTCCATGGCGGCAGGCAAGAGAG 1 chr1:15175413-15175913 ( 47) AATGAGGAGCAAAGTCATGTCTTACATGGTGGCAGGCAAGAGAC 1 chr1:162108772-162109272 ( 34) AAGGAGAAGCAAAGGCACATCTTCTATGGTGGCAGGCAAGAGAG 1 chr6:136248249-136248749 ( 27) AATGAGTAGCAAAGTCACATTTTACATGGTGGCAGGCAAGAGAG 1 chr22:43085322-43085822 ( 41) AAGGAAGAGCAAAGGCACATTATACATGGTGGCAGGCAAGAGAG 1 chr11:63776296-63776796 ( 16) AATAAGGAGCAAAGTCATGTCTTACATGGTGGCAGACAAGAGAG 1 chr13:100173675-10017417 ( 12) AAGGCGGAGTAAAGGCATGTCTTACATGGCAGCAGGCAAGAGAG 1 chr6:26596713-26597213 ( 6) CGACGGCCGTAAAGTGCCTTGCCAACTGACGCAAAACGCGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 44 n= 34143 bayes= 6.12833 E= 1.3e-077 169 -114 -997 -997 169 -997 -114 -997 -148 -997 144 10 -148 -114 186 -997 152 -114 -114 -997 -48 -997 186 -997 -48 -114 144 -148 169 -114 -997 -997 -997 -997 218 -997 -997 186 -997 -48 184 -997 -997 -997 184 -997 -997 -997 184 -997 -997 -997 -997 -997 218 -997 -997 -997 144 52 -997 203 -114 -997 169 -114 -997 -997 -997 118 -997 84 52 -997 118 -148 -997 -997 -997 184 -997 166 -114 -48 -148 -114 -997 152 -997 -114 -997 169 152 -14 -997 -997 -148 186 -997 -148 169 -114 -997 -997 -997 -997 -997 184 -997 -997 218 -997 -148 -997 203 -997 -997 118 -997 84 -148 -997 203 -997 -997 -114 203 -997 -148 203 -997 -997 184 -997 -997 -997 -48 -997 186 -997 -48 -997 186 -997 -997 218 -997 -997 169 -997 -114 -997 169 -114 -997 -997 -997 -997 218 -997 169 -997 -997 -148 -997 -997 218 -997 169 -114 -997 -997 -997 -114 203 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 44 nsites= 10 E= 1.3e-077 0.900000 0.100000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.100000 0.000000 0.600000 0.300000 0.100000 0.100000 0.800000 0.000000 0.800000 0.100000 0.100000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.100000 0.600000 0.100000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.900000 0.100000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.400000 0.000000 0.500000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.700000 0.100000 0.200000 0.100000 0.100000 0.000000 0.800000 0.000000 0.100000 0.000000 0.900000 0.800000 0.200000 0.000000 0.000000 0.100000 0.800000 0.000000 0.100000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.500000 0.000000 0.500000 0.100000 0.000000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.000000 0.000000 1.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKGAGGAGCAAAGKCAYRTCTTACATGGYGGCAGGCAAGAGAG MEME-3 regular expression -------------------------------------------------------------------------------- AA[GT]GA[GA][GA]AG[CT]AAAG[GT]CA[CT][GA]T[CT]TT[AC]CATGG[CT]GGCA[GA][GA]CAAGAGAG -------------------------------------------------------------------------------- Time 953.98 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 width = 30 sites = 36 llr = 599 E-value = 6.7e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 63115:2:53316221612:5311621:61 pos.-specific C 2:::112:1:::1::::31111131:1:1: probability G 1729291916381829161826261729:7 matrix T 2:812:514:4:2:6:3:712:6:315132 bits 2.2 2.0 1.7 * * 1.5 * * * * * Relative 1.3 * * * * * * * * Entropy 1.1 * * * * * * * * * (24.0 bits) 0.9 *** * * * * * * * * * * * * 0.7 *** * * * * *** * * * * * *** 0.4 *** * ***** ******* ***** *** 0.2 ****************************** 0.0 ------------------------------ Multilevel AGTGAGTGAGTGAGTGAGTGAGTGAGTGAG consensus A TAA T A TC A CT G T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr16:88247465-88247965 + 19 2.35e-16 tgaatgactg aatgagtgagtgagtgagtgaatgagtgag tcaatgagcg chr9:136579623-136580123 - 13 1.30e-14 AGAGAGAATG AGTGAGGGAATGAGTGAGTGAGTGAATGAG CAAGTGAGTG chr16:29273554-29274054 + 43 1.97e-14 tgagtgagtc agtgagcgagtgagtgagtcaatgagtgag tgaatgagtc chr6:166466684-166467184 - 11 7.75e-14 CAAGTGAGGG AGTGAGTGAAGGAATGAGTGAATGAGGGAG TGAGTGAATG chr17:73268780-73269280 - 66 1.04e-12 GAGTG AGTGAGTGAAAGAGTGAGTGAATAAGTGAA TAGGTGAGTG chr19:8240348-8240848 + 37 1.23e-12 AATGTATGCA Agtgtgtgtgtgtgtgtgtgtgtgtgtgtg tTTTCATCTC chr1:91574809-91575309 + 12 4.20e-12 TTTATATAAG Cgtgtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr11:1201411-1201911 + 64 4.20e-12 aatgagtgca tgtgagtgaataagtgagtgcatgagtgag tgaataa chr14:20618433-20618933 - 23 4.20e-12 GAGGCAAGTA CGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGGCTAAAGC chr19:12890413-12890913 - 33 7.54e-12 CTTGTGACTC TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TCTGTGTCTG chr11:1155136-1155636 - 3 1.33e-11 TGAGTAAGTG AATGGGTGAATGAGTGAATGAGTCAATGAG TC chr9:3525662-3526162 + 69 8.40e-11 CACAAAagag agagagagagggagagagagagagagcgag ag chr4:8609078-8609578 - 34 1.75e-10 TGAGAGAATG AGTGAGTGAAAAAGTGAGTGAATAAGTGCA TGAGTGAATG chr20:63057136-63057636 - 41 9.71e-10 TGCATGAATC AGTAAGTGTGTGCATGAATGAGTGAATGTG AATGAGTGAG chr1:223707060-223707560 - 6 3.77e-09 TAAATGAGAG AGGGAGTGAGAGAGAGAGATAGAAAGAGAG AGAGA chr5:1870804-1871304 + 57 6.17e-09 TGCCTGTAAG TGTGAGTGCATGCGTGCCTGTGAGTGTGAG TGCATGTGTG chr16:4253183-4253683 - 61 6.17e-09 TGTGAAGCAC AGGGGGCGTGGGAGGGACCGGATCAATGCG GCACTCAACA chr10:3314617-3315117 + 30 1.45e-08 GTGACTTCAG AGTGAGGGAAGGGGAGGGTGACTCACAGAG AGAGGGAAGG chr3:48087440-48087940 - 58 1.45e-08 TGTGTGTGCG CGTGCGTGTGTATGTGTGTGTGCGCGCGCG CGCGTCTCCC chr17:42744698-42745198 - 23 2.73e-08 CTCGCCGCCC TGGGCCTGAGGGAGGGAGAGGCGGAGGGAT CAGGAAATTG chr7:70092365-70092865 + 24 5.46e-08 GGCATGCAGA CATGAGCTTAAGAGAGTGTGAGTGAAAGCT GATATTGGAA chr1:47591727-47592227 + 42 9.01e-08 ctatgagatg aaggtgagtgtgcgtgtgtaactgtgtgtt gtgtgtgtag chr1:8652385-8652885 + 45 1.25e-07 ctcatatgac agtaagagagagaagggctgagcaaaggtg gaaaggcccc chr6:57089630-57090130 - 7 1.85e-07 GCACTGGGAA GATGTGGGAGGATGTGAAGGAGGGTTTGAG TTGGTA chr1:22271790-22272290 - 70 2.00e-07 G AATGAATGAGTGAATGAATGAATGGTAGTG AATGAAGAAA chr3:120093620-120094120 + 70 2.52e-07 GAGAAAGGgg gatgggtaggagggagggagagggagggag g chr7:155589293-155589793 - 5 3.41e-07 TTATAAGCGC AGTGGGAGTTGGAAGGACGCGATCTGTGAG CTCA chr1:8525796-8526296 - 3 5.31e-07 ATTGATTGCG TCGTGGAGAGACAGTGTGTGGATGAGGGAG GG chr17:43670018-43670518 + 65 6.59e-07 TTAAAACAGA AATCAGCGTGTGGGTAACCGCAGCTGTGAG TTACTA chr5:142821967-142822467 - 5 9.36e-07 TTCATCAAAC AGTTAGTGTGATAGAAAGATGGAGAGTGAG TCAA chr1:229950084-229950584 - 5 1.15e-06 TAGAGACTCA GAAGCGGGAGGGTGAGAGGGGGCCGGGGAT AAAA chr1:226308067-226308567 + 63 1.15e-06 TAGGGGAGGC AATGCCCTAGGGTGGGTGTCAGGCAGGGTA CACGTACG chr13:42720382-42720882 + 1 1.72e-06 . CGGGAGCTGATGAGTCACTGAGTGTGCTAT TGCACCATCA chr9:85960556-85961056 + 57 2.39e-06 TAATTATGTC TGAGAGAGTAAGAAAGGCTGTAGAAAGGAA TTAATACTGG chr19:39507201-39507701 + 44 5.36e-06 TGGGACTGCT CGTGGCCGCGGGCGTGGCCGGCGCTGCGCT CTTGCTGGTC chr7:157387136-157387636 + 21 7.64e-06 AGCCATGGCA CGTGCGGGAAAGCGGGACAGCGCCCTCTAG TGTTGGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:88247465-88247965 2.4e-16 18_[+4]_52 chr9:136579623-136580123 1.3e-14 12_[-4]_58 chr16:29273554-29274054 2e-14 42_[+4]_28 chr6:166466684-166467184 7.7e-14 10_[-4]_60 chr17:73268780-73269280 1e-12 65_[-4]_5 chr19:8240348-8240848 1.2e-12 36_[+4]_34 chr1:91574809-91575309 4.2e-12 11_[+4]_59 chr11:1201411-1201911 4.2e-12 63_[+4]_7 chr14:20618433-20618933 4.2e-12 22_[-4]_48 chr19:12890413-12890913 7.5e-12 32_[-4]_38 chr11:1155136-1155636 1.3e-11 2_[-4]_68 chr9:3525662-3526162 8.4e-11 68_[+4]_2 chr4:8609078-8609578 1.8e-10 33_[-4]_37 chr20:63057136-63057636 9.7e-10 40_[-4]_30 chr1:223707060-223707560 3.8e-09 5_[-4]_65 chr5:1870804-1871304 6.2e-09 56_[+4]_14 chr16:4253183-4253683 6.2e-09 60_[-4]_10 chr10:3314617-3315117 1.4e-08 29_[+4]_41 chr3:48087440-48087940 1.4e-08 57_[-4]_13 chr17:42744698-42745198 2.7e-08 22_[-4]_48 chr7:70092365-70092865 5.5e-08 23_[+4]_47 chr1:47591727-47592227 9e-08 41_[+4]_29 chr1:8652385-8652885 1.2e-07 44_[+4]_26 chr6:57089630-57090130 1.9e-07 6_[-4]_64 chr1:22271790-22272290 2e-07 69_[-4]_1 chr3:120093620-120094120 2.5e-07 69_[+4]_1 chr7:155589293-155589793 3.4e-07 4_[-4]_66 chr1:8525796-8526296 5.3e-07 2_[-4]_68 chr17:43670018-43670518 6.6e-07 64_[+4]_6 chr5:142821967-142822467 9.4e-07 4_[-4]_66 chr1:229950084-229950584 1.2e-06 4_[-4]_66 chr1:226308067-226308567 1.2e-06 62_[+4]_8 chr13:42720382-42720882 1.7e-06 [+4]_70 chr9:85960556-85961056 2.4e-06 56_[+4]_14 chr19:39507201-39507701 5.4e-06 43_[+4]_27 chr7:157387136-157387636 7.6e-06 20_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGAGTGWRDGAGTGAGTGARTGWGTGAG width=30 seqs=36 chr16:88247465-88247965 ( 19) AATGAGTGAGTGAGTGAGTGAATGAGTGAG 1 chr9:136579623-136580123 ( 13) AGTGAGGGAATGAGTGAGTGAGTGAATGAG 1 chr16:29273554-29274054 ( 43) AGTGAGCGAGTGAGTGAGTCAATGAGTGAG 1 chr6:166466684-166467184 ( 11) AGTGAGTGAAGGAATGAGTGAATGAGGGAG 1 chr17:73268780-73269280 ( 66) AGTGAGTGAAAGAGTGAGTGAATAAGTGAA 1 chr19:8240348-8240848 ( 37) AGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr1:91574809-91575309 ( 12) CGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr11:1201411-1201911 ( 64) TGTGAGTGAATAAGTGAGTGCATGAGTGAG 1 chr14:20618433-20618933 ( 23) CGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr19:12890413-12890913 ( 33) TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 1 chr11:1155136-1155636 ( 3) AATGGGTGAATGAGTGAATGAGTCAATGAG 1 chr9:3525662-3526162 ( 69) AGAGAGAGAGGGAGAGAGAGAGAGAGCGAG 1 chr4:8609078-8609578 ( 34) AGTGAGTGAAAAAGTGAGTGAATAAGTGCA 1 chr20:63057136-63057636 ( 41) AGTAAGTGTGTGCATGAATGAGTGAATGTG 1 chr1:223707060-223707560 ( 6) AGGGAGTGAGAGAGAGAGATAGAAAGAGAG 1 chr5:1870804-1871304 ( 57) TGTGAGTGCATGCGTGCCTGTGAGTGTGAG 1 chr16:4253183-4253683 ( 61) AGGGGGCGTGGGAGGGACCGGATCAATGCG 1 chr10:3314617-3315117 ( 30) AGTGAGGGAAGGGGAGGGTGACTCACAGAG 1 chr3:48087440-48087940 ( 58) CGTGCGTGTGTATGTGTGTGTGCGCGCGCG 1 chr17:42744698-42745198 ( 23) TGGGCCTGAGGGAGGGAGAGGCGGAGGGAT 1 chr7:70092365-70092865 ( 24) CATGAGCTTAAGAGAGTGTGAGTGAAAGCT 1 chr1:47591727-47592227 ( 42) AAGGTGAGTGTGCGTGTGTAACTGTGTGTT 1 chr1:8652385-8652885 ( 45) AGTAAGAGAGAGAAGGGCTGAGCAAAGGTG 1 chr6:57089630-57090130 ( 7) GATGTGGGAGGATGTGAAGGAGGGTTTGAG 1 chr1:22271790-22272290 ( 70) AATGAATGAGTGAATGAATGAATGGTAGTG 1 chr3:120093620-120094120 ( 70) GATGGGTAGGAGGGAGGGAGAGGGAGGGAG 1 chr7:155589293-155589793 ( 5) AGTGGGAGTTGGAAGGACGCGATCTGTGAG 1 chr1:8525796-8526296 ( 3) TCGTGGAGAGACAGTGTGTGGATGAGGGAG 1 chr17:43670018-43670518 ( 65) AATCAGCGTGTGGGTAACCGCAGCTGTGAG 1 chr5:142821967-142822467 ( 5) AGTTAGTGTGATAGAAAGATGGAGAGTGAG 1 chr1:229950084-229950584 ( 5) GAAGCGGGAGGGTGAGAGGGGGCCGGGGAT 1 chr1:226308067-226308567 ( 63) AATGCCCTAGGGTGGGTGTCAGGCAGGGTA 1 chr13:42720382-42720882 ( 1) CGGGAGCTGATGAGTCACTGAGTGTGCTAT 1 chr9:85960556-85961056 ( 57) TGAGAGAGTAAGAAAGGCTGTAGAAAGGAA 1 chr19:39507201-39507701 ( 44) CGTGGCCGCGGGCGTGGCCGGCGCTGCGCT 1 chr7:157387136-157387636 ( 21) CGTGCGGGAAAGCGGGACAGCGCCCTCTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42529 bayes= 10.3394 E= 6.7e-057 99 -18 -141 -74 -1 -299 165 -1181 -174 -1181 -41 143 -233 -299 196 -233 92 -67 -41 -74 -333 -141 201 -1181 -74 -18 -67 84 -333 -1181 201 -174 92 -199 -199 37 26 -1181 153 -333 -1 -1181 33 67 -133 -299 192 -333 99 -67 -141 -33 -74 -1181 192 -1181 -33 -1181 -41 113 -233 -299 205 -1181 106 -299 -67 -16 -133 18 153 -1181 -74 -141 -141 126 -333 -141 192 -233 92 -141 -18 -52 26 -99 133 -1181 -133 -99 -18 106 -101 18 147 -1181 106 -199 -199 13 -52 -299 165 -174 -133 -67 1 92 -1181 -1181 210 -233 113 -67 -1181 -16 -133 -1181 171 -74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 36 E= 6.7e-057 0.555556 0.194444 0.083333 0.166667 0.277778 0.027778 0.694444 0.000000 0.083333 0.000000 0.166667 0.750000 0.055556 0.027778 0.861111 0.055556 0.527778 0.138889 0.166667 0.166667 0.027778 0.083333 0.888889 0.000000 0.166667 0.194444 0.138889 0.500000 0.027778 0.000000 0.888889 0.083333 0.527778 0.055556 0.055556 0.361111 0.333333 0.000000 0.638889 0.027778 0.277778 0.000000 0.277778 0.444444 0.111111 0.027778 0.833333 0.027778 0.555556 0.138889 0.083333 0.222222 0.166667 0.000000 0.833333 0.000000 0.222222 0.000000 0.166667 0.611111 0.055556 0.027778 0.916667 0.000000 0.583333 0.027778 0.138889 0.250000 0.111111 0.250000 0.638889 0.000000 0.166667 0.083333 0.083333 0.666667 0.027778 0.083333 0.833333 0.055556 0.527778 0.083333 0.194444 0.194444 0.333333 0.111111 0.555556 0.000000 0.111111 0.111111 0.194444 0.583333 0.138889 0.250000 0.611111 0.000000 0.583333 0.055556 0.055556 0.305556 0.194444 0.027778 0.694444 0.083333 0.111111 0.138889 0.222222 0.527778 0.000000 0.000000 0.944444 0.055556 0.611111 0.138889 0.000000 0.250000 0.111111 0.000000 0.722222 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGTGWRDGAGTGAGTGARTGWGTGAG MEME-4 regular expression -------------------------------------------------------------------------------- A[GA]TGAGTG[AT][GA][TAG]G[AT]G[TA]G[AT][GC]TGA[GA]T[GC][AT]G[TG]G[AT]G -------------------------------------------------------------------------------- Time 1240.34 secs. ******************************************************************************** ******************************************************************************** MOTIF CAATCATGGCRGAAGG MEME-5 width = 16 sites = 23 llr = 370 E-value = 9.7e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAATCATGGCRGAAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :99::a:11:6:aa2: pos.-specific C 8:::8:2::7:::::: probability G :11::::99:4a::79 matrix T 1::a2:8::3:::::1 bits 2.2 2.0 * 1.7 * * * * 1.5 ** * ** *** * Relative 1.3 * ** ***** *** * Entropy 1.1 **************** (23.2 bits) 0.9 **************** 0.7 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CAATCATGGCAGAAGG consensus TG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAATCATGGCRGAAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:161026955-161027455 + 55 2.09e-10 ggatgtctca caatcatggcagaagg caaatgagga chr1:6845712-6846212 + 24 2.09e-10 ggaggcctca caatcatggcagaagg caaaggagaa chr10:11778939-11779439 + 33 2.09e-10 ggaggcctca caatcatggcagaagg caaaggagaa chr20:62501891-62502391 - 4 3.74e-10 AGGAAACTTA CAATCATGGCGGAAGG CAC chr6:111095558-111096058 - 46 1.14e-09 GGAGGCCTCA CAATCATGGTGGAAGG TGAAAGAGGA chr17:77237214-77237714 - 33 1.41e-09 ATGAGACTTA CAATCATGGCAGAAAG CAAGAGAGAA chr1:231411089-231411589 - 15 1.88e-09 AGGAAACTTA CAATTATGGCAGAAGG CAAAAGGGAA chr7:44478737-44479237 + 57 4.74e-09 agaaaactta caatcatgacagaagg ggaagtaaac chr6:16168905-16169405 - 29 9.13e-09 GAAACTTATA CAATAATGGCAGAAGG GAAAGCAAAA chr11:63776296-63776796 - 62 9.13e-09 GGATGCCTCA AAATCATGGCAGAAGG GGAATAAGGA chr6:158391884-158392384 + 35 1.26e-08 ggaggcctca caatcacagcagaagg caaggaggag chr5:14202580-14203080 - 15 1.71e-08 AGAGGCCTCA CAGTTATGGCAGAAGG TGAAAGGCAT chr1:224621783-224622283 - 55 3.30e-08 GGAGGCCTCA TGATCATGGCAGAAGG TGAAGGAGGA chr1:8652385-8652885 + 1 3.65e-08 . caattatggtggaaag agaaacaaac chr1:233706766-233707266 + 52 4.92e-08 aggaaactta caatcacagcggaaag ggaagcaggc chr1:15175413-15175913 + 29 5.31e-08 ggaggcctca ctgtcatggcagaagg tgaatgagga chr20:63131518-63132018 + 65 6.66e-08 aggaaactta caatcacgatggaagg gaaagagaca chr13:100173675-10017417 - 58 9.57e-08 GGAGGCCCCA CAATCATGGTGGCAAG TGAAGGCGGA chr10:75377670-75378170 + 61 1.15e-07 aggaaacttt cgatcatggtggaagt tgaagggtaa chr6:150419540-150420040 - 19 1.33e-07 GGAGGCCTCA CAATCATGGCAGAGGA CGAAGAGGAA chr1:162108772-162109272 + 16 1.52e-07 cgaggcttca gaatcatggcgtaagg caaaggagaa chr1:63753488-63753988 + 76 3.73e-07 aggaaacgta caatcatagcggaact ggaagtaaa chr5:96744048-96744548 + 85 5.91e-07 ggaggcctca taattacggtggaaag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAATCATGGCRGAAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161026955-161027455 2.1e-10 54_[+5]_30 chr1:6845712-6846212 2.1e-10 23_[+5]_61 chr10:11778939-11779439 2.1e-10 32_[+5]_52 chr20:62501891-62502391 3.7e-10 3_[-5]_81 chr6:111095558-111096058 1.1e-09 45_[-5]_39 chr17:77237214-77237714 1.4e-09 32_[-5]_52 chr1:231411089-231411589 1.9e-09 14_[-5]_70 chr7:44478737-44479237 4.7e-09 56_[+5]_28 chr6:16168905-16169405 9.1e-09 28_[-5]_56 chr11:63776296-63776796 9.1e-09 61_[-5]_23 chr6:158391884-158392384 1.3e-08 34_[+5]_50 chr5:14202580-14203080 1.7e-08 14_[-5]_70 chr1:224621783-224622283 3.3e-08 54_[-5]_30 chr1:8652385-8652885 3.7e-08 [+5]_84 chr1:233706766-233707266 4.9e-08 51_[+5]_33 chr1:15175413-15175913 5.3e-08 28_[+5]_56 chr20:63131518-63132018 6.7e-08 64_[+5]_20 chr13:100173675-10017417 9.6e-08 57_[-5]_27 chr10:75377670-75378170 1.1e-07 60_[+5]_24 chr6:150419540-150420040 1.3e-07 18_[-5]_66 chr1:162108772-162109272 1.5e-07 15_[+5]_69 chr1:63753488-63753988 3.7e-07 75_[+5]_9 chr5:96744048-96744548 5.9e-07 84_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAATCATGGCRGAAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAATCATGGCRGAAGG width=16 seqs=23 chr1:161026955-161027455 ( 55) CAATCATGGCAGAAGG 1 chr1:6845712-6846212 ( 24) CAATCATGGCAGAAGG 1 chr10:11778939-11779439 ( 33) CAATCATGGCAGAAGG 1 chr20:62501891-62502391 ( 4) CAATCATGGCGGAAGG 1 chr6:111095558-111096058 ( 46) CAATCATGGTGGAAGG 1 chr17:77237214-77237714 ( 33) CAATCATGGCAGAAAG 1 chr1:231411089-231411589 ( 15) CAATTATGGCAGAAGG 1 chr7:44478737-44479237 ( 57) CAATCATGACAGAAGG 1 chr6:16168905-16169405 ( 29) CAATAATGGCAGAAGG 1 chr11:63776296-63776796 ( 62) AAATCATGGCAGAAGG 1 chr6:158391884-158392384 ( 35) CAATCACAGCAGAAGG 1 chr5:14202580-14203080 ( 15) CAGTTATGGCAGAAGG 1 chr1:224621783-224622283 ( 55) TGATCATGGCAGAAGG 1 chr1:8652385-8652885 ( 1) CAATTATGGTGGAAAG 1 chr1:233706766-233707266 ( 52) CAATCACAGCGGAAAG 1 chr1:15175413-15175913 ( 29) CTGTCATGGCAGAAGG 1 chr20:63131518-63132018 ( 65) CAATCACGATGGAAGG 1 chr13:100173675-10017417 ( 58) CAATCATGGTGGCAAG 1 chr10:75377670-75378170 ( 61) CGATCATGGTGGAAGT 1 chr6:150419540-150420040 ( 19) CAATCATGGCAGAGGA 1 chr1:162108772-162109272 ( 16) GAATCATGGCGTAAGG 1 chr1:63753488-63753988 ( 76) CAATCATAGCGGAACT 1 chr5:96744048-96744548 ( 85) TAATTACGGTGGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAATCATGGCRGAAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 10.7185 E= 9.7e-035 -268 190 -234 -168 164 -1117 -134 -268 171 -1117 -134 -1117 -1117 -1117 -1117 184 -268 182 -1117 -68 184 -1117 -1117 -1117 -1117 -34 -1117 157 -110 -1117 198 -1117 -168 -1117 205 -1117 -1117 174 -1117 -10 102 -1117 98 -1117 -1117 -1117 211 -268 178 -234 -1117 -1117 178 -1117 -234 -1117 -36 -234 174 -1117 -268 -1117 198 -168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAATCATGGCRGAAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 23 E= 9.7e-035 0.043478 0.826087 0.043478 0.086957 0.869565 0.000000 0.086957 0.043478 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 0.000000 1.000000 0.043478 0.782609 0.000000 0.173913 1.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.826087 0.130435 0.000000 0.869565 0.000000 0.086957 0.000000 0.913043 0.000000 0.000000 0.739130 0.000000 0.260870 0.565217 0.000000 0.434783 0.000000 0.000000 0.000000 0.956522 0.043478 0.956522 0.043478 0.000000 0.000000 0.956522 0.000000 0.043478 0.000000 0.217391 0.043478 0.739130 0.000000 0.043478 0.000000 0.869565 0.086957 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAATCATGGCRGAAGG MEME-5 regular expression -------------------------------------------------------------------------------- CAATCATGG[CT][AG]GAA[GA]G -------------------------------------------------------------------------------- Time 1520.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGGTAATTTATAAAGRAAAG MEME-6 width = 22 sites = 10 llr = 263 E-value = 3.6e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGGTAATTTATAAAGRAAAG MEME-6 Description -------------------------------------------------------------------------------- Simplified A ::1:::a9:::a:aaa:6aa92 pos.-specific C a::1::::::::::::::::11 probability G ::99a::1:2::::::a4:::7 matrix T :a:::a::a8a:a::::::::: bits 2.2 * * * 2.0 * * * 1.7 ******* * ******* ** 1.5 ******* * ******* ** Relative 1.3 ********* ******* *** Entropy 1.1 ********************* (38.0 bits) 0.9 ********************** 0.7 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CTGGGTAATTTATAAAGAAAAG consensus G G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGTAATTTATAAAGRAAAG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:63753488-63753988 + 2 2.81e-13 a ctgggtaatttataaaggaaag atgtttaatt chr19:33189159-33189659 + 41 2.81e-13 atacccgaga ctgggtaatttataaaggaaag aggtttaatg chr20:62501891-62502391 - 72 4.06e-13 TACTCAA CTGGGTAATGTATAAAGAAAAG AGGTTTGGTT chr5:96744048-96744548 + 20 5.04e-13 ataccagaga ctgggtaatgtataaaggaaag aagtttaatt chr19:40979561-40980061 + 40 7.03e-13 atacttgaca ctgggtaatttataaagaaaaa gaggtttaat chr5:14202580-14203080 - 75 7.03e-13 GAGA CTGGGTAATTTATAAAGAAAAA GAGGTTTAAT chr12:988312-988812 + 14 1.27e-12 atgcctgcag ctgggtaatttataaagaaaac gggtttgttt chr3:61574465-61574965 + 13 1.27e-12 ttatctgaga ctgggtagtttataaagaaaag aggtttattt chr6:150419540-150420040 - 78 1.87e-12 G CTGCGTAATTTATAAAGGAAAG AAGTTTAATT chr19:34129846-34130346 + 48 6.81e-12 atacccaaga ctaggtaatttataaagaaacg aggtttaatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGTAATTTATAAAGRAAAG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:63753488-63753988 2.8e-13 1_[+6]_77 chr19:33189159-33189659 2.8e-13 40_[+6]_38 chr20:62501891-62502391 4.1e-13 71_[-6]_7 chr5:96744048-96744548 5e-13 19_[+6]_59 chr19:40979561-40980061 7e-13 39_[+6]_39 chr5:14202580-14203080 7e-13 74_[-6]_4 chr12:988312-988812 1.3e-12 13_[+6]_65 chr3:61574465-61574965 1.3e-12 12_[+6]_66 chr6:150419540-150420040 1.9e-12 77_[-6]_1 chr19:34129846-34130346 6.8e-12 47_[+6]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGTAATTTATAAAGRAAAG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGGTAATTTATAAAGRAAAG width=22 seqs=10 chr1:63753488-63753988 ( 2) CTGGGTAATTTATAAAGGAAAG 1 chr19:33189159-33189659 ( 41) CTGGGTAATTTATAAAGGAAAG 1 chr20:62501891-62502391 ( 72) CTGGGTAATGTATAAAGAAAAG 1 chr5:96744048-96744548 ( 20) CTGGGTAATGTATAAAGGAAAG 1 chr19:40979561-40980061 ( 40) CTGGGTAATTTATAAAGAAAAA 1 chr5:14202580-14203080 ( 75) CTGGGTAATTTATAAAGAAAAA 1 chr12:988312-988812 ( 14) CTGGGTAATTTATAAAGAAAAC 1 chr3:61574465-61574965 ( 13) CTGGGTAGTTTATAAAGAAAAG 1 chr6:150419540-150420040 ( 78) CTGCGTAATTTATAAAGGAAAG 1 chr19:34129846-34130346 ( 48) CTAGGTAATTTATAAAGAAACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGTAATTTATAAAGRAAAG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 11.6422 E= 3.6e-033 -997 218 -997 -997 -997 -997 -997 184 -148 -997 203 -997 -997 -114 203 -997 -997 -997 218 -997 -997 -997 -997 184 184 -997 -997 -997 169 -997 -114 -997 -997 -997 -997 184 -997 -997 -14 152 -997 -997 -997 184 184 -997 -997 -997 -997 -997 -997 184 184 -997 -997 -997 184 -997 -997 -997 184 -997 -997 -997 -997 -997 218 -997 110 -997 86 -997 184 -997 -997 -997 184 -997 -997 -997 169 -114 -997 -997 -48 -114 166 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGTAATTTATAAAGRAAAG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 10 E= 3.6e-033 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.200000 0.100000 0.700000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGGTAATTTATAAAGRAAAG MEME-6 regular expression -------------------------------------------------------------------------------- CTGGGTAAT[TG]TATAAAG[AG]AAA[GA] -------------------------------------------------------------------------------- Time 1798.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCATKCACWCACWCA MEME-7 width = 16 sites = 28 llr = 375 E-value = 1.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCATKCACWCACWCA MEME-7 Description -------------------------------------------------------------------------------- Simplified A :11a:1:8:4:9:4:a pos.-specific C 219:31917:8:919: probability G :1:::4::::2::::: matrix T 87::741:36::151: bits 2.2 2.0 1.7 * ** 1.5 ** * * * ** Relative 1.3 * ** * *** ** Entropy 1.1 * ** *** *** ** (19.3 bits) 0.9 * *** ******* ** 0.7 * *** ******* ** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TTCATTCACTCACTCA consensus CG TAG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATKCACWCACWCA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr17:73268780-73269280 + 4 7.22e-09 tca ttcatccactcactca ttcactcact chr5:1870804-1871304 - 31 1.23e-08 CTTACAGGCA TGCATGCACTCACACA GGCACGCATG chr9:132377729-132378229 - 37 1.23e-08 TCACACCACA TGCATGCACTCACACA CACCACATGC chr11:1201411-1201911 - 44 1.23e-08 CTCACATGCA CTCATTCACTCACACA TTCACTTATT chr9:132377068-132377568 - 52 1.92e-08 TCACACCACA TGCATTCACACACACA CCACATGCAC chr16:29273554-29274054 - 77 2.75e-08 CTGACTCA TTCACTCACTGACTCA TTCACTCACT chr16:88247465-88247965 - 85 2.75e-08 . TTCACTCACTGACTCA TTCACTCACT chr4:8609078-8609578 + 18 2.75e-08 ttctcagtca ttcatccattcactca tgcacttatt chr11:1155136-1155636 + 63 3.28e-08 tactcactca ttcattcattgactca ttaactcatt chr20:63057136-63057636 + 73 5.08e-08 cacttactga ttcatgcacacactta tttgttcact chr9:136579623-136580123 + 79 7.62e-08 cactcactca ctcattccctcactca ctcatt chr6:166466684-166467184 + 83 7.62e-08 cccttactca ttcatgcactccctca ct chr6:87806518-87807018 - 70 8.40e-08 GTGTATGATG TGCATTCACACACCCA CACTCCAATG chr1:22271790-22272290 + 5 8.40e-08 ttca ttcatttattcactca ccactccttc chr19:12890413-12890913 + 1 9.37e-08 . TTcacacacacacaca catacacaga chr3:69200611-69201111 + 64 1.98e-07 TTCCTTTGCG TCCATTCCCACACACA TAAAAACCAG chr3:23685712-23686212 - 41 2.83e-07 TTACTCATAA CTCATGCCCTGACTCA CCAAGTTGGA chr9:132378306-132378806 - 44 4.52e-07 GCACTCACAC CACATGCATTCACACA CCACATGCAC chr10:132273296-13227379 - 53 6.31e-07 TCACCATGTG TTCATTCGCTCATTCA TCTCATTTAC chr10:130156335-13015683 - 56 8.62e-07 CTAAGTGTGC TTCACGTATAGACTCA CTTAATCCTC chr4:139153551-139154051 + 6 1.02e-06 agtca ttcctccactcaccca aaacaaaggc chr10:121819084-12181958 + 67 1.81e-06 TGCATATGCT TCCATGCATACTCACA ATACATGCTG chr5:32193464-32193964 + 19 1.81e-06 TCTTTTCTTC TCCATGCACACATTTA ATCTATTTCC chr1:91574809-91575309 - 42 2.38e-06 AGATTAAACA CACACACACACACACA CACACACACA chr5:159341834-159342334 - 62 2.55e-06 AAGTGTCAGT TTAAATCATACACACA TTTTAACTGG chr7:129614963-129615463 + 25 4.46e-06 CAACAGGAAG TTAATGTATACATTCA GCTTCTGTCA chr17:48250893-48251393 - 7 5.62e-06 TATCGTGCAG TTAACGCACACATATA AATAAT chr2:46481453-46481953 + 53 5.94e-06 actcatgcaa ttcacttcttgaccca aatgcaacaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATKCACWCACWCA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:73268780-73269280 7.2e-09 3_[+7]_81 chr5:1870804-1871304 1.2e-08 30_[-7]_54 chr9:132377729-132378229 1.2e-08 36_[-7]_48 chr11:1201411-1201911 1.2e-08 43_[-7]_41 chr9:132377068-132377568 1.9e-08 51_[-7]_33 chr16:29273554-29274054 2.8e-08 76_[-7]_8 chr16:88247465-88247965 2.8e-08 84_[-7] chr4:8609078-8609578 2.8e-08 17_[+7]_67 chr11:1155136-1155636 3.3e-08 62_[+7]_22 chr20:63057136-63057636 5.1e-08 72_[+7]_12 chr9:136579623-136580123 7.6e-08 78_[+7]_6 chr6:166466684-166467184 7.6e-08 82_[+7]_2 chr6:87806518-87807018 8.4e-08 69_[-7]_15 chr1:22271790-22272290 8.4e-08 4_[+7]_80 chr19:12890413-12890913 9.4e-08 [+7]_84 chr3:69200611-69201111 2e-07 63_[+7]_21 chr3:23685712-23686212 2.8e-07 40_[-7]_44 chr9:132378306-132378806 4.5e-07 43_[-7]_41 chr10:132273296-13227379 6.3e-07 52_[-7]_32 chr10:130156335-13015683 8.6e-07 55_[-7]_29 chr4:139153551-139154051 1e-06 5_[+7]_79 chr10:121819084-12181958 1.8e-06 66_[+7]_18 chr5:32193464-32193964 1.8e-06 18_[+7]_66 chr1:91574809-91575309 2.4e-06 41_[-7]_43 chr5:159341834-159342334 2.5e-06 61_[-7]_23 chr7:129614963-129615463 4.5e-06 24_[+7]_60 chr17:48250893-48251393 5.6e-06 6_[-7]_78 chr2:46481453-46481953 5.9e-06 52_[+7]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATKCACWCACWCA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCATKCACWCACWCA width=16 seqs=28 chr17:73268780-73269280 ( 4) TTCATCCACTCACTCA 1 chr5:1870804-1871304 ( 31) TGCATGCACTCACACA 1 chr9:132377729-132378229 ( 37) TGCATGCACTCACACA 1 chr11:1201411-1201911 ( 44) CTCATTCACTCACACA 1 chr9:132377068-132377568 ( 52) TGCATTCACACACACA 1 chr16:29273554-29274054 ( 77) TTCACTCACTGACTCA 1 chr16:88247465-88247965 ( 85) TTCACTCACTGACTCA 1 chr4:8609078-8609578 ( 18) TTCATCCATTCACTCA 1 chr11:1155136-1155636 ( 63) TTCATTCATTGACTCA 1 chr20:63057136-63057636 ( 73) TTCATGCACACACTTA 1 chr9:136579623-136580123 ( 79) CTCATTCCCTCACTCA 1 chr6:166466684-166467184 ( 83) TTCATGCACTCCCTCA 1 chr6:87806518-87807018 ( 70) TGCATTCACACACCCA 1 chr1:22271790-22272290 ( 5) TTCATTTATTCACTCA 1 chr19:12890413-12890913 ( 1) TTCACACACACACACA 1 chr3:69200611-69201111 ( 64) TCCATTCCCACACACA 1 chr3:23685712-23686212 ( 41) CTCATGCCCTGACTCA 1 chr9:132378306-132378806 ( 44) CACATGCATTCACACA 1 chr10:132273296-13227379 ( 53) TTCATTCGCTCATTCA 1 chr10:130156335-13015683 ( 56) TTCACGTATAGACTCA 1 chr4:139153551-139154051 ( 6) TTCCTCCACTCACCCA 1 chr10:121819084-12181958 ( 67) TCCATGCATACTCACA 1 chr5:32193464-32193964 ( 19) TCCATGCACACATTTA 1 chr1:91574809-91575309 ( 42) CACACACACACACACA 1 chr5:159341834-159342334 ( 62) TTAAATCATACACACA 1 chr7:129614963-129615463 ( 25) TTAATGTATACATTCA 1 chr17:48250893-48251393 ( 7) TTAACGCACACATATA 1 chr2:46481453-46481953 ( 53) TTCACTTCTTGACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATKCACWCACWCA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50915 bayes= 11.4336 E= 1.0e-018 -1145 -31 -1145 156 -196 -104 -63 128 -138 201 -1145 -1145 179 -263 -1145 -1145 -296 18 -1145 136 -196 -104 83 62 -1145 196 -1145 -97 156 -63 -263 -1145 -1145 162 -1145 20 62 -1145 -1145 103 -1145 183 -4 -1145 173 -263 -1145 -296 -1145 196 -1145 -97 49 -104 -1145 84 -1145 201 -1145 -138 184 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATKCACWCACWCA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 28 E= 1.0e-018 0.000000 0.178571 0.000000 0.821429 0.071429 0.107143 0.142857 0.678571 0.107143 0.892857 0.000000 0.000000 0.964286 0.035714 0.000000 0.000000 0.035714 0.250000 0.000000 0.714286 0.071429 0.107143 0.392857 0.428571 0.000000 0.857143 0.000000 0.142857 0.821429 0.142857 0.035714 0.000000 0.000000 0.678571 0.000000 0.321429 0.428571 0.000000 0.000000 0.571429 0.000000 0.785714 0.214286 0.000000 0.928571 0.035714 0.000000 0.035714 0.000000 0.857143 0.000000 0.142857 0.392857 0.107143 0.000000 0.500000 0.000000 0.892857 0.000000 0.107143 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATKCACWCACWCA MEME-7 regular expression -------------------------------------------------------------------------------- TTCA[TC][TG]CA[CT][TA][CG]AC[TA]CA -------------------------------------------------------------------------------- Time 2080.56 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTGTGCAGGGGAACTCSCATT MEME-8 width = 22 sites = 5 llr = 139 E-value = 9.3e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTGTGCAGGGGAACTCSCATT MEME-8 Description -------------------------------------------------------------------------------- Simplified A :2:::::a::::aa:::::6:: pos.-specific C a:::::8:::::::a:a682:: probability G :::a:a::aaaa:::::4:2:: matrix T :8a:a:2::::::::a::2:aa bits 2.2 * * * **** * * 2.0 * * * **** * * 1.7 * **** ********** ** 1.5 * **** ********** ** Relative 1.3 * ***************** ** Entropy 1.1 ******************* ** (40.0 bits) 0.9 ******************* ** 0.7 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CTTGTGCAGGGGAACTCCCATT consensus A T GTC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGTGCAGGGGAACTCSCATT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:162108772-162109272 + 78 3.88e-14 ggcaagagag cttgtgcaggggaactcccatt t chr22:43085322-43085822 - 19 7.76e-14 GGCAAGAGAG CTTGTGCAGGGGAACTCGCATT TATAAAACCA chr1:234504188-234504688 - 32 3.37e-13 CAAGAGAGAG CTTGTGTAGGGGAACTCCCATT TATAAAACCA chr6:136248249-136248749 - 5 6.91e-13 GGCAAGAGAG CTTGTGCAGGGGAACTCCTGTT TATA chr19:6000406-6000906 - 6 7.52e-13 GGCAAGAGAG CATGTGCAGGGGAACTCGCCTT TATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGTGCAGGGGAACTCSCATT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:162108772-162109272 3.9e-14 77_[+8]_1 chr22:43085322-43085822 7.8e-14 18_[-8]_60 chr1:234504188-234504688 3.4e-13 31_[-8]_47 chr6:136248249-136248749 6.9e-13 4_[-8]_74 chr19:6000406-6000906 7.5e-13 5_[-8]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGTGCAGGGGAACTCSCATT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTGTGCAGGGGAACTCSCATT width=22 seqs=5 chr1:162108772-162109272 ( 78) CTTGTGCAGGGGAACTCCCATT 1 chr22:43085322-43085822 ( 19) CTTGTGCAGGGGAACTCGCATT 1 chr1:234504188-234504688 ( 32) CTTGTGTAGGGGAACTCCCATT 1 chr6:136248249-136248749 ( 5) CTTGTGCAGGGGAACTCCTGTT 1 chr19:6000406-6000906 ( 6) CATGTGCAGGGGAACTCGCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGTGCAGGGGAACTCSCATT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 13.4597 E= 9.3e-006 -897 218 -897 -897 -48 -897 -897 152 -897 -897 -897 184 -897 -897 218 -897 -897 -897 -897 184 -897 -897 218 -897 -897 185 -897 -48 184 -897 -897 -897 -897 -897 218 -897 -897 -897 218 -897 -897 -897 218 -897 -897 -897 218 -897 184 -897 -897 -897 184 -897 -897 -897 -897 218 -897 -897 -897 -897 -897 184 -897 218 -897 -897 -897 144 86 -897 -897 185 -897 -48 110 -14 -14 -897 -897 -897 -897 184 -897 -897 -897 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGTGCAGGGGAACTCSCATT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 5 E= 9.3e-006 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.800000 0.000000 0.200000 0.600000 0.200000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTGTGCAGGGGAACTCSCATT MEME-8 regular expression -------------------------------------------------------------------------------- C[TA]TGTG[CT]AGGGGAACTC[CG][CT][ACG]TT -------------------------------------------------------------------------------- Time 2361.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 width = 31 sites = 5 llr = 167 E-value = 1.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::a::::::::8:::::6aa6:::2:a:88 pos.-specific C a:a:::2:4628:2a:::::::2:::4::22 probability G ::::a:::22222:::a::::2:aa86:::: matrix T :a:::a8a426::8:a:a4::28:::::a:: bits 2.2 * * * * * ** 2.0 * * * * * ** 1.7 ****** * **** ** ** ** 1.5 ****** * * **** ** ** ** Relative 1.3 ****** * * **** ** ****** Entropy 1.1 ******** ******* ** ********* (48.1 bits) 0.9 ******** ********** ********* 0.7 ******** ************ ********* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CTCAGTTTCCTCATCTGTAAAATGGGGATAA consensus C TGCGGC T GC AC CC sequence GTG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr16:5117791-5118291 + 44 4.94e-18 cgctttctgc ctcagttttctcatctgttaaatgggcataa tcacagctcc chr21:31557226-31557726 - 31 1.07e-16 CTTCCTGTGT CTCAGTTTGCGCATCTGTAAAGTGGGGATAA GGAATAACCT chr11:67826861-67827361 + 68 3.59e-16 cactttgtgc ctcagttttgtcatctgttaaacgggcataa tc chr1:43650484-43650984 - 70 3.77e-15 . CTCAGTTTCTCCACCTGTAAAATGGGGATCC CAACCCCCTG chr5:14580438-14580938 + 27 6.00e-15 cttcctgaac ctcagtctcctggtctgtaaattggagataa taacagtgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:5117791-5118291 4.9e-18 43_[+9]_26 chr21:31557226-31557726 1.1e-16 30_[-9]_39 chr11:67826861-67827361 3.6e-16 67_[+9]_2 chr1:43650484-43650984 3.8e-15 69_[-9] chr5:14580438-14580938 6e-15 26_[+9]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCAGTTTBCTCATCTGTWAAATGGGSATAA width=31 seqs=5 chr16:5117791-5118291 ( 44) CTCAGTTTTCTCATCTGTTAAATGGGCATAA 1 chr21:31557226-31557726 ( 31) CTCAGTTTGCGCATCTGTAAAGTGGGGATAA 1 chr11:67826861-67827361 ( 68) CTCAGTTTTGTCATCTGTTAAACGGGCATAA 1 chr1:43650484-43650984 ( 70) CTCAGTTTCTCCACCTGTAAAATGGGGATCC 1 chr5:14580438-14580938 ( 27) CTCAGTCTCCTGGTCTGTAAATTGGAGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41930 bayes= 12.4679 E= 1.7e-005 -897 218 -897 -897 -897 -897 -897 184 -897 218 -897 -897 184 -897 -897 -897 -897 -897 218 -897 -897 -897 -897 184 -897 -14 -897 152 -897 -897 -897 184 -897 86 -14 52 -897 144 -14 -48 -897 -14 -14 110 -897 185 -14 -897 152 -897 -14 -897 -897 -14 -897 152 -897 218 -897 -897 -897 -897 -897 184 -897 -897 218 -897 -897 -897 -897 184 110 -897 -897 52 184 -897 -897 -897 184 -897 -897 -897 110 -897 -14 -48 -897 -14 -897 152 -897 -897 218 -897 -897 -897 218 -897 -48 -897 185 -897 -897 86 144 -897 184 -897 -897 -897 -897 -897 -897 184 152 -14 -897 -897 152 -14 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 5 E= 1.7e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.200000 0.400000 0.000000 0.600000 0.200000 0.200000 0.000000 0.200000 0.200000 0.600000 0.000000 0.800000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.600000 0.000000 0.000000 0.400000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.200000 0.200000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.400000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAGTTTBCTCATCTGTWAAATGGGSATAA MEME-9 regular expression -------------------------------------------------------------------------------- CTCAGT[TC]T[CTG][CGT][TCG][CG][AG][TC]CTGT[AT]AA[AGT][TC]GG[GA][GC]AT[AC][AC] -------------------------------------------------------------------------------- Time 2639.37 secs. ******************************************************************************** ******************************************************************************** MOTIF RRGMRAAGKCATGTCTTACATG MEME-10 width = 22 sites = 7 llr = 159 E-value = 4.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRGMRAAGKCATGTCTTACATG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 461367a:1:a:1::1:a:a:: pos.-specific C :::613:::a:1::a:::9::: probability G 63913::94:::9:::::1::a matrix T :1:::::14::9:a:9a:::a: bits 2.2 * * * 2.0 * * * 1.7 * ** ** ** *** 1.5 * ** ** *** ****** Relative 1.3 * ** ************* Entropy 1.1 * * *** ************* (32.7 bits) 0.9 * * *** ************* 0.7 ******** ************* 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GAGCAAAGGCATGTCTTACATG consensus AG AGC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGMRAAGKCATGTCTTACATG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:111095558-111096058 - 16 6.18e-14 GGTGAAAGAG GAGCAAAGGCATGTCTTACATG GCAACAGGCA chr1:161026955-161027455 + 79 1.40e-13 ggcaaatgag gagcaaagtcatgtcttacatg chr17:77237214-77237714 - 3 3.16e-13 AGCAAGAGAG AAGCAAAGGCATGTCTTACATG GC chr1:6845712-6846212 + 48 7.08e-12 ggcaaaggag aagcaaaggcatgtcatacatg gcagacgaga chr6:158391884-158392384 + 57 1.47e-10 aaggcaagga ggagcaagtcatgtcttacatg gatggcagca chr1:234504188-234504688 - 72 3.86e-10 GCAAAGG AGGAGCAGTCACATCTTACATG GCAGCAGGCA chr1:226308067-226308567 + 11 8.40e-10 CTCAACACAA GTGAGCATACATGTCTTAGATG TCAGGGTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGMRAAGKCATGTCTTACATG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:111095558-111096058 6.2e-14 15_[-10]_63 chr1:161026955-161027455 1.4e-13 78_[+10] chr17:77237214-77237714 3.2e-13 2_[-10]_76 chr1:6845712-6846212 7.1e-12 47_[+10]_31 chr6:158391884-158392384 1.5e-10 56_[+10]_22 chr1:234504188-234504688 3.9e-10 71_[-10]_7 chr1:226308067-226308567 8.4e-10 10_[+10]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGMRAAGKCATGTCTTACATG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRGMRAAGKCATGTCTTACATG width=22 seqs=7 chr6:111095558-111096058 ( 16) GAGCAAAGGCATGTCTTACATG 1 chr1:161026955-161027455 ( 79) GAGCAAAGTCATGTCTTACATG 1 chr17:77237214-77237714 ( 3) AAGCAAAGGCATGTCTTACATG 1 chr1:6845712-6846212 ( 48) AAGCAAAGGCATGTCATACATG 1 chr6:158391884-158392384 ( 57) GGAGCAAGTCATGTCTTACATG 1 chr1:234504188-234504688 ( 72) AGGAGCAGTCACATCTTACATG 1 chr1:226308067-226308567 ( 11) GTGAGCATACATGTCTTAGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGMRAAGKCATGTCTTACATG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 12.5665 E= 4.5e-004 62 -945 137 -945 103 -945 37 -96 -96 -945 195 -945 3 137 -63 -945 103 -63 37 -945 135 37 -945 -945 184 -945 -945 -945 -945 -945 195 -96 -96 -945 96 62 -945 218 -945 -945 184 -945 -945 -945 -945 -63 -945 162 -96 -945 195 -945 -945 -945 -945 184 -945 218 -945 -945 -96 -945 -945 162 -945 -945 -945 184 184 -945 -945 -945 -945 195 -63 -945 184 -945 -945 -945 -945 -945 -945 184 -945 -945 218 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGMRAAGKCATGTCTTACATG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 7 E= 4.5e-004 0.428571 0.000000 0.571429 0.000000 0.571429 0.000000 0.285714 0.142857 0.142857 0.000000 0.857143 0.000000 0.285714 0.571429 0.142857 0.000000 0.571429 0.142857 0.285714 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.142857 0.000000 0.428571 0.428571 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGMRAAGKCATGTCTTACATG MEME-10 regular expression -------------------------------------------------------------------------------- [GA][AG]G[CA][AG][AC]AG[GT]CATGTCTTACATG -------------------------------------------------------------------------------- Time 2917.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:30466727-30467227 1.37e-01 100 chr10:63707209-63707709 4.63e-03 83_[-1(2.09e-05)]_1 chr5:59317236-59317736 8.05e-02 100 chr8:98011515-98012015 1.16e-01 71_[+5(4.45e-05)]_13 chr16:68091583-68092083 1.83e-02 2_[-7(3.99e-05)]_82 chr12:105431459-10543195 9.56e-01 100 chr1:167658593-167659093 5.51e-01 100 chr5:73394024-73394524 1.01e-05 59_[+7(3.76e-08)]_25 chr1:205376713-205377213 1.01e-01 3_[-1(3.48e-05)]_81 chr1:201512858-201513358 1.82e-05 6_[-7(5.39e-07)]_52_[+8(8.40e-05)]_\ 4 chr1:234723958-234724458 9.14e-02 100 chr4:108135508-108136008 1.35e-01 81_[-1(3.15e-05)]_3 chr3:61634619-61635119 2.04e-01 100 chr5:96744048-96744548 4.87e-19 19_[+6(5.04e-13)]_3_[+1(1.25e-07)]_\ 3_[+2(3.48e-11)]_1_[+5(5.91e-07)] chr1:234745785-234746285 2.94e-01 100 chr1:177124760-177125260 5.15e-02 100 chr1:182637787-182638287 4.91e-02 68_[+7(2.86e-05)]_16 chr1:222643747-222644247 2.01e-01 100 chr4:139153551-139154051 5.33e-03 5_[+7(1.02e-06)]_79 chr16:4253183-4253683 5.71e-03 60_[-4(6.17e-09)]_10 chr20:47789273-47789773 3.93e-02 32_[+3(7.30e-05)]_24 chr21:26799065-26799565 7.78e-03 55_[-6(4.66e-05)]_23 chr10:93702418-93702918 8.92e-01 100 chr7:98398799-98399299 2.53e-03 57_[+1(1.69e-05)]_27 chr1:224245099-224245599 5.04e-01 100 chr16:66977650-66978150 1.21e-03 8_[-4(5.64e-05)]_44_[+1(1.72e-06)]_\ 2 chr3:69200611-69201111 5.14e-04 63_[+7(1.98e-07)]_21 chr22:42620719-42621219 8.07e-03 100 chr1:85274894-85275394 7.49e-01 100 chr6:35454713-35455213 7.18e-02 57_[+1(1.22e-05)]_27 chr8:6787737-6788237 6.08e-02 100 chr7:128194825-128195325 3.12e-01 100 chr13:20882941-20883441 6.26e-02 44_[+1(9.78e-06)]_40 chr1:225975956-225976456 4.76e-01 100 chr6:82073347-82073847 3.46e-01 100 chr10:112775848-11277634 8.72e-01 100 chr6:90369051-90369551 3.03e-02 100 chr4:128393119-128393619 1.07e-02 3_[-2(7.95e-05)]_77 chr5:160080777-160081277 1.21e-01 100 chr4:8301007-8301507 1.18e-03 2_[+1(1.36e-05)]_7_[+1(8.73e-06)]_4_\ [+1(5.51e-07)]_7_[+1(1.36e-05)]_16 chr20:63131518-63132018 6.45e-15 15_[+1(1.02e-07)]_3_[+2(3.13e-12)]_\ 10_[+5(6.66e-08)]_20 chr2:25009893-25010393 8.45e-02 100 chr19:34216614-34217114 1.00e+00 100 chr1:58779966-58780466 1.55e-01 100 chr12:108478536-10847903 9.06e-01 100 chr10:21525273-21525773 1.46e-02 70_[+7(6.85e-05)]_14 chr10:112732199-11273269 4.21e-02 75_[+1(2.09e-05)]_9 chr19:34269858-34270358 3.15e-02 52_[+7(4.75e-05)]_32 chr9:108271881-108272381 2.93e-01 100 chr6:87702452-87702952 1.98e-01 100 chr17:78935969-78936469 5.40e-01 100 chr3:61574465-61574965 1.38e-06 12_[+6(1.27e-12)]_66 chr17:47604418-47604918 2.59e-01 100 chr1:224885300-224885800 4.05e-01 100 chr11:34222873-34223373 4.81e-02 70_[-1(2.56e-06)]_14 chr1:56571014-56571514 2.50e-01 100 chr19:14476541-14477041 6.55e-02 100 chr13:98339767-98340267 7.02e-02 43_[-4(7.12e-05)]_27 chr17:59547224-59547724 6.88e-02 100 chr15:55823127-55823627 5.93e-01 100 chr5:125657905-125658405 2.38e-01 100 chr1:232620486-232620986 2.59e-01 100 chr5:716656-717156 1.71e-02 100 chr19:40190463-40190963 8.59e-01 100 chr19:38838568-38839068 1.52e-01 100 chr1:182617581-182618081 2.89e-01 100 chr16:23213332-23213832 2.62e-11 29_[+7(5.97e-10)]_55 chr8:25998426-25998926 7.58e-01 100 chr1:22271790-22272290 2.67e-09 4_[+7(8.40e-08)]_7_[-4(4.23e-08)]_\ 20_[+7(3.82e-09)]_7 chr21:33971478-33971978 2.17e-03 27_[+1(4.24e-05)]_57 chr6:165674295-165674795 2.93e-01 100 chr1:53095266-53095766 1.94e-03 25_[-4(6.13e-07)]_45 chr12:50221129-50221629 8.96e-01 100 chr8:95134547-95135047 1.49e-04 39_[+1(9.90e-07)]_45 chr7:44399146-44399646 5.38e-01 100 chr9:92983955-92984455 7.59e-03 57_[-10(1.73e-05)]_21 chr1:225378871-225379371 1.48e-01 100 chr8:29176910-29177410 6.38e-01 100 chr11:67826861-67827361 1.63e-07 67_[+9(3.59e-16)]_2 chr13:100173675-10017417 1.28e-31 11_[-3(8.61e-23)]_2_[-5(9.57e-08)]_\ 1_[-2(2.34e-12)]_6 chr9:8723164-8723664 7.30e-01 100 chr1:198837492-198837992 9.85e-01 100 chr15:67792444-67792944 6.75e-01 100 chr6:112018993-112019493 8.56e-01 100 chr15:36951758-36952258 5.16e-02 30_[+1(1.72e-06)]_54 chr15:69465943-69466443 4.24e-01 100 chr2:100004998-100005498 7.51e-03 64_[+1(5.51e-07)]_20 chr15:73633702-73634202 3.84e-01 100 chr17:42744698-42745198 3.26e-02 22_[-4(2.73e-08)]_48 chrX:149719903-149720403 8.76e-01 100 chr13:39605616-39606116 2.06e-02 46_[+1(9.78e-06)]_38 chr19:38544228-38544728 5.37e-03 70_[+10(7.17e-06)]_8 chr19:13082054-13082554 3.28e-01 100 chr3:168974996-168975496 8.97e-02 100 chr1:93960725-93961225 8.79e-01 100 chr19:39304232-39304732 4.59e-01 100 chr8:13257933-13258433 5.99e-01 100 chr6:109010660-109011160 1.06e-02 40_[-8(9.65e-05)]_10_[-7(3.21e-05)]_\ 12 chr6:34656192-34656692 3.91e-01 100 chr15:41241125-41241625 5.89e-01 100 chr1:201721092-201721592 1.05e-01 100 chr1:233635858-233636358 7.17e-02 100 chr17:76611371-76611871 1.68e-05 42_[-1(2.11e-07)]_42 chr10:23408489-23408989 6.61e-01 100 chr7:116496595-116497095 3.27e-02 5_[+1(3.84e-05)]_39_[+2(3.53e-05)]_\ 20 chr11:63776296-63776796 1.73e-35 15_[-3(6.89e-23)]_2_[-5(9.13e-09)]_\ 1_[-2(2.74e-12)]_2 chr5:143128667-143129167 2.49e-01 100 chr14:61331947-61332447 3.18e-01 100 chr12:988312-988812 2.00e-05 13_[+6(1.27e-12)]_65 chr1:26097581-26098081 3.54e-03 30_[-1(5.51e-07)]_27_[-1(1.36e-05)]_\ 11 chr10:5548767-5549267 2.03e-02 100 chr1:226308067-226308567 2.16e-08 10_[+10(8.40e-10)]_3_[-1(4.28e-06)]_\ 11_[+4(1.15e-06)]_8 chr21:29217852-29218352 7.63e-01 100 chr13:45178539-45179039 2.07e-01 56_[-7(1.54e-05)]_28 chr4:80307186-80307686 5.74e-01 100 chr3:182436469-182436969 2.74e-01 100 chr17:36125386-36125886 1.54e-01 83_[+1(2.84e-05)]_1 chr1:235408402-235408902 6.84e-01 100 chr13:113155903-11315640 4.30e-11 5_[+1(2.93e-06)]_3_[+2(3.13e-13)]_\ 56 chr20:53609938-53610438 9.56e-02 50_[+3(8.32e-05)]_6 chr22:19002307-19002807 9.11e-01 100 chr3:48087440-48087940 1.06e-06 22_[+5(5.07e-05)]_27_[-4(1.32e-08)]_\ 5 chr6:156963918-156964418 1.23e-01 8_[+1(9.84e-05)]_5_[+1(1.52e-05)]_\ 55 chr8:71076001-71076501 4.39e-06 21_[-10(2.38e-05)]_12_\ [+1(4.83e-06)]_1_[+2(2.97e-05)]_8 chr8:26019988-26020488 1.19e-01 12_[-5(7.88e-05)]_72 chr10:11778939-11779439 3.73e-40 11_[+2(2.34e-12)]_1_[+5(2.09e-10)]_\ 2_[+3(5.59e-26)]_6 chr10:34861728-34862228 9.10e-01 100 chr10:33388223-33388723 1.77e-01 100 chr6:134673536-134674036 1.40e-03 [+1(1.25e-07)]_84 chr3:14822119-14822619 7.03e-01 100 chr15:81878355-81878855 9.03e-03 100 chr1:234504188-234504688 8.40e-22 31_[-8(3.37e-13)]_2_[-3(1.04e-12)]_\ 1 chr6:125584491-125584991 3.42e-03 3_[+1(2.57e-05)]_81 chr16:1719798-1720298 7.39e-02 6_[-1(5.14e-05)]_78 chr1:6845712-6846212 1.56e-25 2_[+2(3.13e-13)]_1_[+5(2.09e-10)]_8_\ [+10(7.08e-12)]_31 chr20:50569405-50569905 6.15e-01 100 chr13:113493286-11349378 4.50e-02 100 chr1:226002505-226003005 1.73e-01 46_[+3(9.21e-05)]_10 chr19:30662127-30662627 3.04e-02 100 chr4:185912715-185913215 8.59e-01 100 chr5:43064783-43065283 4.63e-01 100 chr12:31749197-31749697 2.29e-01 100 chr1:151060099-151060599 5.97e-01 100 chr6:150419540-150420040 1.23e-20 18_[-5(1.33e-07)]_1_[-2(3.22e-11)]_\ 3_[-1(1.25e-07)]_3_[-6(1.87e-12)]_1 chr6:158391884-158392384 8.85e-18 13_[+2(2.34e-12)]_1_[+5(1.26e-08)]_\ 6_[+10(1.47e-10)]_22 chr1:233706766-233707266 2.11e-15 2_[+1(8.96e-09)]_3_[+2(3.13e-12)]_\ 10_[+5(4.92e-08)]_33 chr13:37046887-37047387 7.69e-02 100 chr12:123034865-12303536 2.46e-01 37_[-9(7.44e-05)]_32 chr1:225830791-225831291 9.91e-02 14_[-4(3.13e-05)]_56 chr10:77305624-77306124 3.51e-01 84_[+1(6.22e-05)] chr10:69217087-69217587 1.53e-01 100 chr10:124530100-12453060 5.61e-06 66_[-4(2.94e-07)]_4 chr19:33189159-33189659 4.89e-09 40_[+6(2.81e-13)]_3_[+1(6.40e-07)]_\ 19 chr5:74019875-74020375 2.88e-01 41_[-1(9.84e-05)]_43 chr5:921385-921885 8.16e-01 100 chr17:51144499-51144999 4.06e-01 100 chr14:99524276-99524776 4.56e-01 100 chr12:89352481-89352981 1.48e-01 100 chr1:151070354-151070854 4.16e-03 39_[+1(8.21e-05)]_45 chr12:29796763-29797263 7.16e-01 100 chr1:89719661-89720161 4.25e-01 100 chr1:52955500-52956000 2.10e-01 100 chr1:16677933-16678433 3.50e-01 100 chr19:5603421-5603921 7.49e-01 28_[+1(7.49e-05)]_5_[+1(7.49e-05)]_\ 35 chr15:63407432-63407932 5.11e-01 100 chr17:43315800-43316300 7.76e-01 100 chr21:36914319-36914819 2.95e-02 73_[-1(1.09e-05)]_11 chr4:4541922-4542422 4.70e-02 34_[+2(9.29e-06)]_46 chr2:173250213-173250713 3.68e-01 100 chr22:40339989-40340489 9.16e-01 100 chr10:29622368-29622868 2.55e-01 100 chr6:47168175-47168675 1.41e-01 100 chr20:63057136-63057636 2.89e-10 21_[+1(3.50e-07)]_3_[-4(9.71e-10)]_\ 2_[+7(5.08e-08)]_12 chr1:39261712-39262212 2.59e-02 100 chr1:223714957-223715457 2.32e-02 55_[+5(7.64e-05)]_29 chr12:53551855-53552355 4.85e-02 38_[+1(3.48e-05)]_46 chr7:44478737-44479237 1.75e-11 7_[+1(4.28e-06)]_3_[+2(1.92e-11)]_\ 10_[+5(4.74e-09)]_28 chr10:132700567-13270106 3.78e-01 100 chr15:70856804-70857304 5.99e-01 100 chr13:41696555-41697055 6.66e-04 36_[-4(1.06e-07)]_34 chr22:40155986-40156486 3.94e-01 100 chr20:37915919-37916419 2.91e-01 100 chr5:67451890-67452390 2.44e-01 100 chr1:43650484-43650984 3.54e-08 69_[-9(3.77e-15)] chr7:133492152-133492652 2.47e-01 100 chr7:69804921-69805421 1.36e-01 100 chr14:21383960-21384460 5.39e-01 100 chr1:231411089-231411589 5.35e-16 14_[-5(1.88e-09)]_10_[-2(3.13e-13)]_\ 3_[-1(1.25e-07)]_21 chr19:12890413-12890913 4.00e-08 [+7(9.37e-08)]_16_[-4(7.54e-12)]_38 chr16:1271750-1272250 7.04e-01 100 chr22:28933981-28934481 3.18e-01 100 chr11:76371089-76371589 1.44e-01 39_[-6(2.19e-05)]_39 chr6:118896259-118896759 7.34e-01 100 chr9:86142905-86143405 3.17e-01 100 chr15:33226524-33227024 1.16e-01 42_[+1(3.15e-05)]_42 chr17:51217906-51218406 5.65e-05 7_[+1(1.31e-06)]_8_[+1(1.31e-06)]_\ 53 chr17:75368271-75368771 5.55e-01 100 chr17:28810200-28810700 8.35e-03 14_[-6(9.94e-05)]_[-6(9.94e-05)]_\ [-6(1.47e-05)]_20 chrX:13774621-13775121 6.15e-03 10_[-1(8.73e-06)]_74 chr5:14168542-14169042 4.25e-01 100 chr1:84247240-84247740 3.69e-02 100 chr1:62720880-62721380 3.39e-03 60_[-1(1.09e-05)]_24 chr5:159341834-159342334 4.97e-03 61_[-7(2.55e-06)]_23 chr13:42720382-42720882 3.59e-05 [+4(1.72e-06)]_70 chr13:100392650-10039315 3.15e-02 39_[+1(3.15e-05)]_24_[+1(5.14e-05)]_\ 5 chr3:11495898-11496398 8.84e-01 100 chr3:19889185-19889685 2.61e-01 100 chr11:32563052-32563552 2.67e-01 100 chr6:13500199-13500699 2.11e-03 56_[-4(1.02e-05)]_14 chr13:99871404-99871904 1.88e-01 43_[-3(8.45e-05)]_13 chr2:111296941-111297441 9.62e-01 100 chr1:235817330-235817830 1.27e-01 58_[-9(7.26e-05)]_11 chr2:46481453-46481953 2.36e-02 34_[+1(5.14e-05)]_2_[+7(5.94e-06)]_\ 32 chr2:77567683-77568183 2.46e-01 75_[+10(4.68e-05)]_3 chr4:156931262-156931762 1.80e-02 22_[-1(1.52e-05)]_62 chr15:81888798-81889298 6.34e-02 100 chr17:77237214-77237714 7.51e-27 2_[-10(3.16e-13)]_8_[-5(1.41e-09)]_\ 10_[-2(3.13e-13)]_3_[-1(1.25e-07)]_3 chr12:24378489-24378989 7.69e-01 100 chr6:136248249-136248749 3.54e-30 4_[-8(6.91e-13)]_[-3(6.16e-23)]_7_\ [+2(5.24e-06)]_3 chr8:17766279-17766779 2.14e-02 100 chrX:12052031-12052531 2.46e-02 100 chr1:164563723-164564223 8.28e-02 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83_[+1(4.24e-05)]_1 chr10:130156335-13015683 4.51e-03 5_[-7(9.57e-06)]_9_[-7(9.57e-06)]_9_\ [-7(8.62e-07)]_29 chr1:228861081-228861581 1.04e-01 28_[-1(8.99e-05)]_56 chr1:241460399-241460899 7.08e-02 50_[-3(3.24e-05)]_6 chr6:107659051-107659551 1.40e-01 100 chr6:21749723-21750223 1.44e-01 45_[-8(6.81e-05)]_33 chr1:177255359-177255859 1.17e-01 100 chr15:71295313-71295813 3.17e-02 31_[+1(8.73e-06)]_53 chr6:151357976-151358476 9.48e-02 100 chr7:155589293-155589793 4.27e-02 4_[-4(3.41e-07)]_66 chr16:14326016-14326516 7.15e-01 100 chr22:42765760-42766260 6.20e-01 100 chr1:153490383-153490883 1.35e-03 75_[-1(3.78e-06)]_9 chr17:76440941-76441441 1.77e-02 15_[-1(1.09e-05)]_69 chr1:71049849-71050349 5.40e-01 100 chr5:155056836-155057336 1.27e-02 82_[+1(3.84e-05)]_2 chr1:180928531-180929031 6.63e-01 100 chr8:486476-486976 1.20e-01 100 chr1:145892034-145892534 4.20e-02 26_[+1(2.32e-05)]_58 chr6:57089630-57090130 4.14e-05 6_[-4(1.85e-07)]_9_[+1(9.84e-05)]_\ 39 chr17:79407324-79407824 1.90e-03 49_[-1(4.28e-06)]_35 chr16:5117791-5118291 2.23e-09 43_[+9(4.94e-18)]_26 chr1:8790979-8791479 4.73e-02 46_[+1(4.24e-05)]_38 chr5:116574678-116575178 5.22e-04 75_[-7(9.08e-06)]_9 chr3:14329373-14329873 1.31e-01 100 chrUn_KI270467v1:2554-30 7.30e-01 100 chr5:17379144-17379644 9.91e-01 100 chr1:169942321-169942821 9.89e-01 100 chr12:107759400-10775990 1.47e-02 13_[-1(8.61e-07)]_71 chr12:98646289-98646789 3.68e-04 51_[-4(8.73e-07)]_19 chr10:22912139-22912639 6.38e-01 100 chr1:116853595-116854095 3.32e-02 16_[+1(1.52e-05)]_68 chr6:85464105-85464605 1.29e-02 7_[+1(2.93e-06)]_77 chr11:46948417-46948917 6.31e-02 84_[-1(6.22e-05)] chr10:121310103-12131060 6.46e-01 100 chr5:74017835-74018335 7.37e-01 100 chr1:211734327-211734827 1.40e-01 1_[-10(8.31e-06)]_77 chr1:9163898-9164398 8.62e-04 10_[-1(5.38e-08)]_30_[+6(7.34e-05)]_\ 22 chr5:72246947-72247447 1.91e-01 100 chr15:57914479-57914979 2.44e-03 44_[+1(6.40e-07)]_40 chr6:150134493-150134993 6.62e-01 100 chr15:67690901-67691401 8.04e-03 44_[+1(2.93e-06)]_40 chr11:1155136-1155636 4.05e-11 2_[-4(1.33e-11)]_2_[-4(5.95e-08)]_1_\ [+1(6.16e-06)]_1_[+7(4.52e-07)]_2 chr5:137146254-137146754 3.70e-01 72_[-1(9.84e-05)]_12 chr6:154410452-154410952 7.42e-01 100 chr19:38713018-38713518 4.98e-09 3_[+1(2.05e-08)]_81 chr19:6000406-6000906 1.47e-37 5_[-8(7.52e-13)]_[-3(1.36e-24)]_7_\ [+2(6.96e-08)]_2 chr1:66543364-66543864 2.27e-01 100 chr15:75452690-75453190 2.30e-01 100 chr15:65401197-65401697 3.39e-01 100 chr21:31557226-31557726 5.44e-09 30_[-9(1.07e-16)]_39 chr1:234881678-234882178 5.75e-01 100 chr17:35589454-35589954 9.50e-01 100 chr6:26029196-26029696 1.87e-01 100 chr17:43670018-43670518 1.75e-03 64_[+4(6.59e-07)]_6 chr17:45334242-45334742 1.04e-01 100 chr11:1201411-1201911 4.25e-12 3_[-7(2.19e-07)]_8_[-7(1.37e-06)]_\ [-7(1.23e-08)]_4_[+4(4.20e-12)]_7 chr5:139247815-139248315 1.20e-01 17_[-1(2.84e-05)]_67 chr12:132343527-13234402 7.14e-01 100 chr17:50372843-50373343 3.11e-01 39_[-4(3.83e-05)]_31 chr1:91574809-91575309 2.81e-07 11_[+4(4.20e-12)]_[-7(2.38e-06)]_43 chr5:115702008-115702508 7.36e-02 100 chr5:14156490-14156990 7.42e-01 21_[+7(8.06e-05)]_63 chrX:73944011-73944511 2.77e-01 100 chr16:88247465-88247965 3.73e-16 10_[+4(3.11e-12)]_1_[-1(1.78e-07)]_\ 4_[-1(1.02e-07)]_7_[-7(2.75e-08)] chr11:64415949-64416449 3.36e-01 4_[-1(5.14e-05)]_24_[-1(5.14e-05)]_\ 22_[-1(5.14e-05)]_2 chr5:59303215-59303715 5.78e-01 100 chr12:57782490-57782990 3.44e-02 58_[+1(1.88e-05)]_26 chr2:84958389-84958889 1.08e-01 6_[-2(6.97e-05)]_74 chr1:243179658-243180158 6.55e-01 100 chr19:8240348-8240848 8.42e-11 20_[-7(9.35e-07)]_[+4(1.23e-12)]_34 chr9:132377729-132378229 2.18e-05 2_[-7(7.55e-05)]_[-1(4.83e-06)]_2_\ [-7(1.23e-08)]_4_[-1(4.83e-06)]_2_[-7(7.55e-05)]_10 chr1:229253246-229253746 4.06e-02 34_[-1(9.84e-05)]_50 chr19:35545214-35545714 5.48e-02 17_[-8(1.15e-05)]_61 chr6:21748584-21749084 1.89e-05 68_[+1(2.68e-08)]_16 chr17:73268780-73269280 1.15e-13 11_[-4(1.00e-11)]_3_[+1(1.25e-07)]_\ 5_[+7(2.19e-07)]_3_[+1(1.50e-06)] chr8:6840529-6841029 3.01e-08 8_[-7(1.17e-07)]_76 chr6:149012125-149012625 3.22e-03 24_[-1(1.09e-05)]_60 chr19:35879953-35880453 1.66e-01 36_[-1(3.15e-05)]_48 chr21:36202092-36202592 3.71e-01 100 chr1:232704714-232705214 1.33e-01 100 chr6:32983005-32983505 5.40e-01 100 chr19:2529419-2529919 5.75e-01 100 chr5:139050962-139051462 1.10e-03 48_[+1(2.84e-05)]_36 chr10:72204255-72204755 3.59e-02 100 chr6:53233245-53233745 1.52e-01 100 chr7:157387136-157387636 1.38e-02 20_[+4(7.64e-06)]_50 chr1:225700112-225700612 5.68e-03 23_[-4(1.14e-05)]_47 chr8:510311-510811 4.73e-01 100 chr19:40862651-40863151 4.56e-05 34_[+1(1.02e-07)]_50 chr5:175331233-175331733 7.41e-02 15_[-2(5.78e-05)]_15_[-1(2.84e-05)]_\ 34 chr1:203625539-203626039 3.33e-01 100 chr6:138405903-138406403 2.57e-01 100 chr17:45320821-45321321 4.52e-02 52_[+2(5.24e-06)]_28 chr14:103801395-10380189 3.08e-03 39_[+1(1.52e-05)]_45 chr9:130780834-130781334 8.78e-03 34_[-1(1.31e-06)]_50 chr16:12120424-12120924 1.70e-01 100 chr12:6323182-6323682 1.03e-01 53_[+1(7.49e-05)]_31 chr21:37087022-37087522 2.48e-01 11_[-2(3.73e-05)]_69 chr12:112375056-11237555 6.49e-03 16_[-6(4.05e-05)]_62 chr13:98221231-98221731 6.83e-01 100 chr6:16757308-16757808 1.86e-01 43_[+1(2.09e-05)]_41 chr9:136579623-136580123 4.75e-14 12_[-4(1.30e-14)]_4_[-4(2.62e-11)]_\ 2_[+7(7.62e-08)]_6 chr17:48239234-48239734 4.74e-02 53_[+7(6.02e-05)]_31 chr12:70242550-70243050 3.16e-02 30_[-1(3.15e-05)]_54 chr10:110916562-11091706 6.64e-01 100 chr10:50463981-50464481 2.81e-01 25_[-10(7.93e-05)]_53 chr12:10721665-10722165 4.30e-02 21_[+1(1.69e-05)]_63 chr16:29273554-29274054 2.48e-13 1_[-1(1.88e-05)]_[-1(1.02e-07)]_9_\ [+4(1.97e-14)]_4_[-7(2.75e-08)]_8 chr3:61821715-61822215 9.89e-02 100 chr15:64387505-64388005 5.03e-01 100 chr1:86774468-86774968 4.40e-03 21_[-3(8.89e-06)]_16_[-1(7.79e-06)]_\ 3 chr1:232793968-232794468 8.78e-01 100 chr10:75377670-75378170 1.61e-03 30_[+2(1.47e-05)]_10_[+5(1.15e-07)]_\ 24 chr5:69521107-69521607 4.18e-02 100 chr6:82260180-82260680 6.65e-01 100 chr15:81962411-81962911 3.58e-02 74_[+10(8.61e-05)]_4 chr6:85078033-85078533 1.04e-02 56_[-1(1.31e-06)]_28 chr20:2947364-2947864 4.97e-03 53_[+7(2.26e-05)]_6_[+1(6.83e-05)]_\ 9 chr17:50694065-50694565 1.14e-03 20_[-1(4.35e-08)]_64 chr4:8300804-8301304 1.88e-02 22_[+1(8.73e-06)]_29_[+1(8.73e-06)]_\ 17 chr14:103350025-10335052 9.99e-01 100 chr12:71455365-71455865 4.08e-01 100 chr1:235903045-235903545 4.17e-01 100 chr8:109611128-109611628 8.13e-02 100 chr1:125179941-125180441 9.92e-01 100 chr9:137509078-137509578 2.92e-01 30_[-1(2.84e-05)]_54 chr1:64183850-64184350 2.22e-01 100 chr15:71747481-71747981 7.98e-01 100 chr20:4603665-4604165 1.19e-01 41_[+9(3.31e-05)]_28 chr1:224317291-224317791 5.12e-02 100 chr19:42032342-42032842 1.48e-02 77_[+1(2.57e-05)]_7 chr19:32373727-32374227 5.46e-01 100 chr18:49656006-49656506 8.56e-01 100 chr5:1870804-1871304 8.15e-09 6_[-7(1.47e-06)]_8_[-7(1.23e-08)]_4_\ [-7(5.94e-06)]_8_[-7(1.47e-06)]_10 chr10:121819084-12181958 1.82e-02 66_[+7(1.81e-06)]_18 chr12:1051633-1052133 1.06e-02 39_[-1(2.57e-05)]_45 chr1:235919321-235919821 7.69e-02 74_[+1(9.84e-05)]_10 chr1:234961981-234962481 1.60e-02 100 chr1:183026345-183026845 2.56e-01 100 chr19:40831786-40832286 1.88e-05 10_[-3(6.98e-07)]_46 chr9:132378306-132378806 7.56e-03 12_[-1(4.83e-06)]_15_[-7(4.52e-07)]_\ [-1(4.83e-06)]_[-7(4.52e-07)]_9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: indra ********************************************************************************