# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 17:00:43 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN4.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 17:00:43 PST 2017)
#        host: surya
#        when: Mon Dec 18 17:13:30 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.233 C 0.248 G 0.269 T 0.250


MOTIF CACACRRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACACRRA   TYYGTGTG        252        116   7.6e-018   1.5e-013
#         CACACAAA   TTTGTGTG         97         35   5.3e-009   1.1e-004
#         CACACAGA   TCTGTGTG        156         81   3.3e-008   6.6e-004
#         CACACGGA   TCCGTGTG         23          3   3.7e-005   7.5e-001
#         CACACGAA   TTCGTGTG         16          2   6.1e-004   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 511 E= 1.5e-013
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.908023 0.000000 0.091977 0.000000
0.338552 0.000000 0.661448 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGGARK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGGARK     MYTCCC         84         24   5.3e-010   1.0e-005
#           GGGAAG     CTTCCC         27          4   1.4e-005   2.7e-001
#           GGGAGG     CCTCCC         38         12   1.1e-004   2.2e+000
#           GGGAGT     ACTCCC         24          9   6.1e-003   1.2e+002
#           GGGAAT     ATTCCC         12          2   6.2e-003   1.2e+002

letter-probability matrix: alength= 4 w= 6 nsites= 109 E= 1.0e-005
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.366972 0.000000 0.633028 0.000000
0.000000 0.000000 0.623853 0.376147


MOTIF ACACACBC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACBC   GVGTGTGT        326        225   3.2e-009   6.0e-005
#         ACACACCC   GGGTGTGT         82         36   5.2e-006   9.8e-002
#         ACACACGC   GCGTGTGT        211        142   7.9e-006   1.5e-001
#         ACACACTC   GAGTGTGT        106         65   4.6e-004   8.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 611 E= 6.0e-005
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.196399 0.541735 0.261866
0.000000 1.000000 0.000000 0.000000


MOTIF GCGCGYGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCGYGC   GCRCGCGC         43          7   6.0e-008   1.1e-003
#         GCGCGCGC   GCGCGCGC         27          2   6.3e-007   1.2e-002
#         GCGCGTGC   GCACGCGC         19          5   3.0e-003   5.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.1e-003
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.586957 0.000000 0.413043
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACGTRCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ACGTRCA    TGYACGT         74         26   2.9e-007   5.4e-003
#          ACGTGCA    TGCACGT         49         17   3.2e-005   6.0e-001
#          ACGTACA    TGTACGT         34         12   6.7e-004   1.2e+001

letter-probability matrix: alength= 4 w= 7 nsites= 89 E= 5.4e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.382022 0.000000 0.617978 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.28 seconds