Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GGAAMC | 6 | GGAACC |
CCGCVGCC | 8 | CCGCCGCC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.187 C 0.313 G 0.313 T 0.187
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
CCGCVGCC | DREME-2 | chr19 | + | 1652566 | 1652573 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr16 | + | 1964879 | 1964886 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr16 | - | 3135316 | 3135323 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr11 | + | 3136859 | 3136866 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr3 | + | 9731414 | 9731421 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | + | 12881241 | 12881248 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr3 | + | 14178320 | 14178327 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr3 | - | 15860216 | 15860223 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr10 | + | 17201650 | 17201657 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | - | 17337218 | 17337225 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr10 | - | 21495763 | 21495770 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr10 | - | 21495827 | 21495834 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | + | 23167719 | 23167726 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | + | 23167804 | 23167811 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | - | 27794059 | 27794066 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | - | 29665532 | 29665539 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr16 | - | 29811567 | 29811574 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr16 | + | 31073444 | 31073451 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr4 | - | 31996538 | 31996545 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr21 | + | 32278785 | 32278792 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 32292301 | 32292308 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr20 | - | 34111915 | 34111922 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr20 | - | 34112110 | 34112117 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | - | 35259847 | 35259854 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | - | 35727943 | 35727950 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | + | 35987334 | 35987341 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr5 | - | 36242239 | 36242246 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr13 | + | 36346491 | 36346498 | 5.48e-05 | 0.341 | ccgcagcc |
CCGCVGCC | DREME-2 | chr5 | - | 36690151 | 36690158 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr20 | - | 37095877 | 37095884 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | - | 37371364 | 37371371 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | + | 37989841 | 37989848 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | - | 38244028 | 38244035 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr19 | + | 40090865 | 40090872 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | - | 40587569 | 40587576 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | + | 44246391 | 44246398 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr21 | - | 44299711 | 44299718 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr7 | + | 44796455 | 44796462 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr20 | - | 46689339 | 46689346 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chrX | - | 47233228 | 47233235 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr16 | - | 50369043 | 50369050 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr20 | - | 50790930 | 50790937 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 53220598 | 53220605 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr12 | + | 56725067 | 56725074 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr12 | - | 56725224 | 56725231 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr5 | + | 60700112 | 60700119 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr5 | - | 60700177 | 60700184 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr17 | - | 62652593 | 62652600 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr9 | + | 62838159 | 62838166 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr17 | + | 63842604 | 63842611 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr17 | - | 67245942 | 67245949 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr17 | - | 67245983 | 67245990 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr16 | - | 67872980 | 67872987 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr12 | - | 68808784 | 68808791 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr15 | - | 70097986 | 70097993 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr15 | + | 72117702 | 72117709 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr10 | + | 73096696 | 73096703 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr14 | - | 73714144 | 73714151 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chrX | - | 73944175 | 73944182 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chrX | - | 73944192 | 73944199 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr15 | - | 75368457 | 75368464 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr17 | + | 82065771 | 82065778 | 5.48e-05 | 0.341 | ccgcagcc |
CCGCVGCC | DREME-2 | chr16 | - | 85303755 | 85303762 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 86704764 | 86704771 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr5 | + | 90474559 | 90474566 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr5 | + | 91280661 | 91280668 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr5 | + | 91280675 | 91280682 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 95234182 | 95234189 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr15 | - | 99565878 | 99565885 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr15 | - | 99566062 | 99566069 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr14 | - | 102592243 | 102592250 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr7 | + | 114086399 | 114086406 | 5.48e-05 | 0.341 | ccgcagcc |
CCGCVGCC | DREME-2 | chr7 | - | 114086455 | 114086462 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr13 | + | 114131581 | 114131588 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | + | 116100820 | 116100827 | 5.48e-05 | 0.341 | CCGCAgcc |
CCGCVGCC | DREME-2 | chr6 | + | 131628513 | 131628520 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr5 | + | 132830134 | 132830141 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr7 | - | 149422310 | 149422317 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | + | 151790536 | 151790543 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | + | 155244640 | 155244647 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | + | 159727018 | 159727025 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | + | 170502921 | 170502928 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr6 | + | 170502921 | 170502928 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr2 | - | 176136504 | 176136511 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 182604259 | 182604266 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | + | 182604500 | 182604507 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr3 | + | 183884805 | 183884812 | 5.48e-05 | 0.341 | ccgcagcc |
CCGCVGCC | DREME-2 | chr1 | + | 184386838 | 184386845 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr3 | + | 184711670 | 184711677 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr3 | + | 194135087 | 194135094 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | + | 200669955 | 200669962 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 212699682 | 212699689 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 212699688 | 212699695 | 5.48e-05 | 0.341 | CCGCAGCC |
CCGCVGCC | DREME-2 | chr1 | - | 224615967 | 224615974 | 5.48e-05 | 0.341 | CCGCAGCC |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CCGCVGCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_4 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.