# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 17:00:29 PST 2017)
#   negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 17:00:29 PST 2017)
#        host: kali
#        when: Mon Dec 18 17:21:48 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.192 C 0.310 G 0.315 T 0.183


MOTIF GGAAMC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGAAMC     GKTTCC        101         39   1.3e-008   4.0e-004
#           GGAACC     GGTTCC         62         19   3.9e-007   1.2e-002
#           GGAAAC     GTTTCC         46         21   1.2e-003   3.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 121 E= 4.0e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.404959 0.595041 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGCVGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCVGCC   GGCBGCGG         74         23   3.1e-008   9.4e-004
#         CCGCCGCC   GGCGGCGG         29          9   7.0e-004   2.1e+001
#         CCGCGGCC   GGCCGCGG         25          7   9.2e-004   2.8e+001
#         CCGCAGCC   GGCTGCGG         25          8   2.0e-003   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 9.4e-004
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.316456 0.367089 0.316456 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 16.57 seconds