******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:26125707-26126207 1.0000 100 chr4:83034862-83035362 1.0000 100 chr17:14622761-14623261 1.0000 100 chr14:50947411-50947911 1.0000 100 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1.0000 100 chr14:32934774-32935274 1.0000 100 chr1:245079166-245079666 1.0000 100 chr6:43059643-43060143 1.0000 100 chr19:49422494-49422994 1.0000 100 chr5:10583935-10584435 1.0000 100 chr1:46246606-46247106 1.0000 100 chr1:64745538-64746038 1.0000 100 chr8:42842844-42843344 1.0000 100 chr1:940390-940890 1.0000 100 chr7:134432787-134433287 1.0000 100 chr13:39348359-39348859 1.0000 100 chr4:153782170-153782670 1.0000 100 chrX:41351053-41351553 1.0000 100 chr2:42141743-42142243 1.0000 100 chr3:63967694-63968194 1.0000 100 chr16:4956305-4956805 1.0000 100 chr15:40769708-40770208 1.0000 100 chr16:22219992-22220492 1.0000 100 chr1:178542479-178542979 1.0000 100 chr19:43528127-43528627 1.0000 100 chr19:40405191-40405691 1.0000 100 chr22:46737707-46738207 1.0000 100 chr22:19855844-19856344 1.0000 100 chr19:12757776-12758276 1.0000 100 chr18:9914880-9915380 1.0000 100 chr9:32572436-32572936 1.0000 100 chr9:126651140-126651640 1.0000 100 chr17:8016203-8016703 1.0000 100 chr2:189441230-189441730 1.0000 100 chr1:225651896-225652396 1.0000 100 chr1:85201467-85201967 1.0000 100 chrX:129654593-129655093 1.0000 100 chr1:236301725-236302225 1.0000 100 chr9:122093064-122093564 1.0000 100 chr1:224872952-224873452 1.0000 100 chr15:78077304-78077804 1.0000 100 chr12:57454943-57455443 1.0000 100 chr11:65888594-65889094 1.0000 100 chr17:42388787-42389287 1.0000 100 chr12:68933226-68933726 1.0000 100 chr6:150627940-150628440 1.0000 100 chr1:87328479-87328979 1.0000 100 chr9:85940541-85941041 1.0000 100 chr3:197211642-197212142 1.0000 100 chr22:24952774-24953274 1.0000 100 chr6:111888843-111889343 1.0000 100 chr5:36875667-36876167 1.0000 100 chr18:58221069-58221569 1.0000 100 chr6:156933388-156933888 1.0000 100 chr6:131135276-131135776 1.0000 100 chr10:112956678-11295717 1.0000 100 chr7:26291907-26292407 1.0000 100 chr12:132791354-13279185 1.0000 100 chr20:11881534-11882034 1.0000 100 chr12:94615817-94616317 1.0000 100 chr11:10807911-10808411 1.0000 100 chr1:92298889-92299389 1.0000 100 chr5:80645067-80645567 1.0000 100 chr10:110567727-11056822 1.0000 100 chr15:89090623-89091123 1.0000 100 chr5:38258620-38259120 1.0000 100 chr8:55879908-55880408 1.0000 100 chr17:27546020-27546520 1.0000 100 chr11:107017591-10701809 1.0000 100 chr3:4680329-4680829 1.0000 100 chr1:116373208-116373708 1.0000 100 chr8:9002885-9003385 1.0000 100 chr12:113245897-11324639 1.0000 100 chr3:171809249-171809749 1.0000 100 chr9:137244033-137244533 1.0000 100 chr17:19317422-19317922 1.0000 100 chr8:42897165-42897665 1.0000 100 chr2:109129527-109130027 1.0000 100 chr17:78723387-78723887 1.0000 100 chr1:50968489-50968989 1.0000 100 chr17:732011-732511 1.0000 100 chr5:96807739-96808239 1.0000 100 chr8:47960758-47961258 1.0000 100 chr5:93249861-93250361 1.0000 100 chr16:31108407-31108907 1.0000 100 chr10:110144321-11014482 1.0000 100 chr2:178451608-178452108 1.0000 100 chr11:64230083-64230583 1.0000 100 chr19:11384134-11384634 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.211 C 0.289 G 0.289 T 0.211 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN30.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.214 C 0.286 G 0.286 T 0.214 ******************************************************************************** ******************************************************************************** MOTIF GGSGGSGSSGGSRGSGRSSSSG MEME-1 width = 22 sites = 160 llr = 1473 E-value = 1.0e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSGGSGSSGGSRGSGRSSSSG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::12:2:::1:13:2:3:1::1 pos.-specific C 3152341451242252163351 probability G 7846738546756748545748 matrix T :1:1:11:12:::1::1:1::: bits 2.2 2.0 1.8 1.6 Relative 1.3 Entropy 1.1 (13.3 bits) 0.9 ** * * * * * * 0.7 ** * ** * * * * *** 0.4 *** * ********** * *** 0.2 ***** **************** 0.0 ---------------------- Multilevel GGCGGCGGCGGGGGCGGCGGCG consensus C G CG CGTCCACG AGCCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGSSGGSRGSGRSSSSG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:53794792-53795292 + 1 6.19e-11 . ggcggcgggggcggcgacggcg actggcgggt chr1:85201467-85201967 + 2 4.25e-09 a ggcggaggcggaggcggcggcg gcTCCCCATG chr12:69585566-69586066 + 74 1.46e-08 TCCTTCTAGG GGCGGAGCCTGGAGCGACGGGG TCTGA chr7:100271747-100272247 - 53 1.46e-08 GCCGGCAGGG CGCGGAGGGGGCGGGGGCCGCG GCTCGTCCCC chr19:44955078-44955578 + 78 2.29e-08 Tcggggacgg ggcggggctggcggcgggggcg g chr6:131135276-131135776 - 46 3.52e-08 CAGCCCCCGC GGCAGCGGCAGCAGCGGCGGCG GCAGCCGCAG chr7:6374485-6374985 - 14 6.46e-08 CCGCTCGCTG GGCCGCGGCGGCGGCGGCAGGG CGCTGAGATA chr13:102597000-10259750 + 29 6.46e-08 AGGGCCCGGG CGCGGGGGCGCGGGCGGCCGGG GACGCGGGTG chr11:107017591-10701809 + 43 9.49e-08 TCCTGGCCCc ggcagtggcagcggcggcggcg gcagaagcag chr2:206085539-206086039 - 70 9.49e-08 GGCCGCGCA GGCTGGGCGGGCGGCGAGCGCG CTTACGTGAG chr16:68084542-68085042 + 21 1.37e-07 GCCCCGCAGA GGGTGGGCCTGCGGCGACCGCG AGCTCAGAGT chr1:201982721-201983221 + 20 1.96e-07 acggcggcgg cgctgcggcgggagcggcccgg ctcggaggag chr1:149390381-149390881 + 50 1.96e-07 CCAAACTTCG ggcggcggctgaggcggcggcc gaggagcggc chr9:137188798-137189298 - 46 3.26e-07 TCCTCTATGC CTGGGGGCCGGGAGGGGCGGCG CTGTGGGCCC chr17:8162760-8163260 + 41 3.26e-07 CCCGCATCCG GGCACTgcgggcgggggcgggg cgccgcggga chr8:55879908-55880408 + 38 3.85e-07 CGGGCACGCG GGCAGTGGGTGCAGGGGCCGCG GCTGTGCCAC chr12:65279185-65279685 - 22 3.85e-07 CAGCAGCGCA GGGAGGGCGGGCGGCGGGTGCG CTCCCGGGTG chr8:66712569-66713069 + 73 3.85e-07 AGGTAGGTGC GGGGCCGGCGGGAGGGTCCGCG CGCCCG chr1:156054795-156055295 + 63 3.85e-07 GGGAGGAAGC GGCAGAGGGGGCAGCGGCTGGG GATACCGGCC chr3:194139379-194139879 - 62 3.85e-07 AGGACTGGCC GGCGGTGGGGGAGGAGGGCGCG CCCGCCAGAC chr12:121210077-12121057 + 32 4.52e-07 GTGAGCGTGG GGCCGCGCGGGGGGCGCGGCGG GTGCTGCCCT chrX:129654593-129655093 + 65 5.30e-07 AGCTGGCCTC GGCGGCTCCGGGAGCGGCAGCG GCGAGCTCTT chr7:92833144-92833644 + 3 6.19e-07 GC GGCGCCGCTGGGGCGGGCGGGG GGTGCGCTCA chr17:79183360-79183860 + 8 7.22e-07 GCCCGGG CGGGGAGGCTGGAGAGAGCGCG CGCGAGAATA chr15:78077304-78077804 - 77 9.75e-07 GG CGCGGCGCAGGGGGCGGCCGCG GAGCCCGGGG chr1:64745538-64746038 + 38 9.75e-07 CATTTTGCGG GGGGGAGCGGGGGTAGAGGGGG CCGAAGCTTC chr8:28701546-28702046 + 5 9.75e-07 CTGG GGACGCGGCGGGAGGGACCGGG TCCGCCGTGC chr1:178542479-178542979 - 54 1.13e-06 CGGGGCCCGG CGGGGGCGCGGGGGCGTCGGGG TACTGACTGG chr20:58389390-58389890 + 39 1.13e-06 CGACGGCGCT GTCGCGGGGGGCGGCGAGGCCG GGCCGGGCCT chr7:130733536-130734036 + 58 1.30e-06 GCAGGTGGGG CGCGGCGCCGCCCGCGCCGGGG CTGGGGGCGG chr7:74658042-74658542 + 73 1.30e-06 GAGGCGATGG GGGTGGGGCGGCACGGACGCGG TCGCGG chr1:52842891-52843391 + 61 1.30e-06 GTGCGTTGTC GGGGGAGGCGGCCTGGGCGCCG CGGAGCGGGG chr1:15526868-15527368 + 36 1.50e-06 CCTGGGCTCT CGGAGGGCGGCGGGGGAGGGGG CTGTCTCCTG chr1:116372995-116373495 + 39 1.98e-06 GTGAGGAGGA GGCGCGGGCTGGAGCTGCGGCG GGGTCTGGGG chr12:110281791-11028229 + 29 1.98e-06 GACAGCTGCG GGCGGAGGGTCGGGCCAGCGCG CCGGCCCCGC chr18:26549150-26549650 - 72 1.98e-06 CCTTCCC GGGGCTGGCTGGACCGGCGCGG ACTTGCCCCA chr20:47501699-47502199 + 42 2.27e-06 ggcttagtcg gtggcggccggcggcggctgcg ggctgagcgg chr17:7561901-7562401 + 68 2.60e-06 CAGCAGGAGT GGCGGGGCCGCCGCCGTCGCCG GAGAGATGAG chr6:71288463-71288963 - 79 2.60e-06 . GGCGGCCCCGGGACCGCCGCCG CGCGCGCCTG chr4:7042410-7042910 - 65 2.96e-06 CTGCGGGCGA GGAGGGGCCTGGAGAGCCGGGG AGGCCGGCCG chr11:62787229-62787729 + 62 2.96e-06 CCTTCCTGTG CGGGGCCGTGGCGGCCGCGGCG ATGACTCGGA chr6:43059643-43060143 - 24 3.38e-06 CACTGAGTCA GTCGGTGGCGCAGGGGGCGGGG CAGGTCGTCT chr1:50422880-50423380 - 61 3.38e-06 AGTGGAGCCG GGAGGCGCGTGCAGCGCCAGCG GAGGAGGAGG chr13:106535483-10653598 - 10 3.38e-06 ATGGGCTTCG CGCGGCGGGGCGGGGCCCCGCG TTTATAGCG chr9:68705111-68705611 - 23 3.38e-06 GCAGCCTCGC CGCGGCGCGTTCGGGGACCGGG AACCGGGGAC chr10:98030479-98030979 + 25 3.38e-06 gccgggggcc cggggtggggggcgccggcgcG GCCAATCGCG chr6:41073555-41074055 - 26 3.38e-06 CCGGGCGGAG CGGGCTGGGAGGAGGGGCGCGG CGGAGCAGGG chr11:65961753-65962253 + 17 3.38e-06 gggcgagcgc gggagcgggcggcgcggggccg aagctgaggc chr8:47960758-47961258 + 61 3.84e-06 TCCACGGTAA CCGCGCGCCGGCGGGGAGGGCG TGGCGCGGAG chr9:126651140-126651640 + 61 3.84e-06 CAGGTGCAAG GGGTGGGGCACAGGGGGCGGGG GTCAGCCCAG chr1:228082323-228082823 - 45 4.36e-06 TAGGGCTGCA GGGGGCGGGGCCGGGGACACCC TGCCCCGGGC chr1:224183297-224183797 - 48 4.36e-06 CCCGCGGGCT GGCGGCCCGAGCGGCGACGGGA CGCGACGGGG chr22:46737707-46738207 - 18 4.94e-06 GCGGCTTGGG GGACCCGGCTGGGGGGACCGGG TGCAGGGAGC chr19:1651666-1652166 - 37 4.94e-06 CTCGGGTAGA GGGGGGCCCGGCCCGGGCGCCG GAGTTTGGGG chr17:80477150-80477650 + 28 4.94e-06 GGCCCGATCG CGGGCAGGCGGCGTCGCCGGGG CTGGACGTTC chr4:1870657-1871157 - 44 4.94e-06 GTGAGAGGGG CGCGGGGCCTGGGGCCCGCGGG AGGCTGCTAG chr17:56960843-56961343 - 37 5.58e-06 ACACGCCAAA GGCTCCGGCGGGGGCGAGCCGC CCGAGCACGC chr5:134176794-134177294 + 79 5.58e-06 GGCCGAGAAC GGCTGGGCGGGCCCAGGCCGGG chr17:732011-732511 - 71 6.30e-06 GGGGCCCA GGCGGAGGCGGGAAGGGCCGCG GCTCCCGGCT chr7:105532098-105532598 - 38 6.30e-06 GCCGTCTCAC CGGGGCTGCAGGAGAGGCGCCG ATCTCGCCGG chr17:2050400-2050900 + 78 7.10e-06 CATGCGGGGC GGGGGTCCCAGGAGGGCCGGGG A chr17:48908191-48908691 + 32 7.10e-06 GCCCGGTTCT CGGTGGTGCGGGAGCGGGCGGG AGCAGCGGCC chr8:9002885-9003385 + 38 7.99e-06 CGCTGCTGGA GTCGCCGCGGCCGGAGGGCGGG GAGGAGCCGC chr5:143403515-143404015 + 37 8.98e-06 CCCGCCCGAG GGGCCGCGCGGCGGCCGCGGGG AACGATGCAA chr1:15523958-15524458 - 5 8.98e-06 GAAGCGGATC GGCGGCTCCTGCGGCGGTGCCG GCTG chr17:81387303-81387803 - 73 1.01e-05 GATGCG GCGGGAGGGGCGGCCGAGCGCG CCCGGGACCC chr9:116687184-116687684 + 79 1.13e-05 GCGGGGGAAC GTGCCGGCGTGCAGCGGCCGCG chr1:1273674-1274174 + 11 1.26e-05 TGCGCGGTCC GGGGCGGTGAGGAGGGAGGGGG AGGGCTGGCC chr6:149717319-149717819 + 28 1.26e-05 CGCGTGTTGG GGGTGGGGTGGGAGACACGCCG CCAGAAAGAC chr12:56079325-56079825 + 22 1.26e-05 CCAAATCCCC GGGAGAGGCCCGGCCGGCGCCG GGTCTGGAGG chr13:46796940-46797440 - 30 1.41e-05 GGCATCATAT GGGCGGGGCTGAGGCGAGGCCC CGGCGGCCAT chr15:52568782-52569282 - 1 1.41e-05 CATTTTCGCG GGCGGAGGCGGCCCGGCGGGCC chr13:27920112-27920612 - 39 1.57e-05 GGTGCGCCAC CGCGGGGTCGTCGGCGAGGGGG GGCACCTCGT chrX:129654872-129655372 - 7 1.57e-05 GGGCTGCAGA GTGCGTGCCTGGAGGGGGGCGG TGCGGG chr1:207868986-207869486 - 18 1.75e-05 GCGGCCGCTG GGTGGCGCCGCGCGGGACGCCG AGCGTGGGAA chr2:127408091-127408591 + 60 1.75e-05 CCGTGACACC GGCGCTGCGGGGAGCGGTGGCC TCGCAGAGGC chr16:31108407-31108907 - 39 1.95e-05 CTGGGCCCCT GGGGCCGGCTTGGGAGGGTGCG GCACGGAGTC chr13:110307182-11030768 - 23 1.95e-05 GGGCTCTCTG GGCGCCGGCCCCGGGGGCTCGG GCGGCCCCTT chr1:92485725-92486225 - 28 1.95e-05 CTGCCCTGGT GGGGGCGGCCGCGGGGACTCGC AGAGCACTGG chr10:22340675-22341175 - 64 1.95e-05 GGGCGGACCC GGGTGCGGCGGCCGAGATGCGG GCGGTGGAGG chr20:25248189-25248689 - 74 2.16e-05 GCTGG CGCGGCTCCGGGACCGGCGCCC TCTCAGCGGG chr5:181190362-181190862 - 48 2.16e-05 TGGGAGGCGT GGAGGAGCGAGCGGGGTCTGCG GCTCCGGCCG chr2:199850824-199851324 - 7 2.16e-05 CCTCCCAAAC CGCAGAGCGGCAGGCGCGGCCG CTGGTT chr11:64230083-64230583 - 11 2.40e-05 GCCCACCTGG GGAGCGGGCGGGACAGAGCCCG CTCTCTGCGG chr19:1407238-1407738 - 11 2.40e-05 AGGCGGATTT CGCGCCGCCGCAGTCGGGGCCG TCGCGCGTTT chrX:118346203-118346703 - 62 2.40e-05 ACACACCCGC GGGTGAGGGGGCCGGCGCCGCC TGGAGGAAGG chr1:42334137-42334637 + 73 2.40e-05 CTGCAAAAAT GGAGCTGGGAGGGGGGGCGGGA GACACT chr2:222424149-222424649 - 2 2.66e-05 GAGGGCTTGG GCGGCCCCGGGCGGCCACGGGG G chr12:49367098-49367598 + 12 2.66e-05 GAGAGGGCTC CGGGGCGGGGCGAGCCGCTGCC TGGGCGAGGG chr7:99919030-99919530 - 34 2.66e-05 TGCACCGCAA CTGGGCGCCGGGCGGCGGCCCG TTCCCCTGCC chr17:81891817-81892317 + 46 2.94e-05 GGGGTCCGGC GGGCGCGGCTTCGGCGGGCGGC AGCCGCTGCA chr17:78168474-78168974 + 49 2.94e-05 TTGGTGAGCC CGGGGAGGGCGGGCCGAGGGCA CCCTGGGGAC chr19:42253431-42253931 - 24 2.94e-05 GAGGGGCCCT GGGGGTGGGGCCGGGGTGCGGA GTGCGGTAGG chr15:58749227-58749727 - 18 3.25e-05 AGGCACGACT GCGAGCGCCGGGGGCGCCGCGA CCACGGCGGA chr16:88650978-88651478 + 43 3.25e-05 GGCCCTGCCC GGCAGCCCCAGCCCAGGCGGGG AGTTCCTGCG chr9:6681102-6681602 - 57 3.25e-05 GCGGTGACCG CGCGGAGGCACCGGCGGCCCAG AGGCTTATAG chr12:27244272-27244772 + 3 3.25e-05 TC CGGGGAACCTGCGGCGACGGCC TTGGCCCTCT chr1:153775043-153775543 - 38 3.58e-05 CCCGGGAGGA GTGCGGGTGTGGGGCGGCCCCG GACTCCCAGC chr5:95731132-95731632 + 27 3.58e-05 agctgccagc cgaggaggcgcggcGGAGAGGG GACTGCGGTC chr10:69630244-69630744 + 7 3.58e-05 CAGGTG CGCCgcgggccgggcgcgcggg tggcccaccg chr16:69330606-69331106 - 60 3.58e-05 CCTGCCCGGA GGGAGGGCGAGCGGAGACGCAG GCCGAACCGC chr15:81000515-81001015 + 57 3.95e-05 CACGCCGGCA GCGTCCGCGTTGGGCGGCGGCG TCCCCCGCAG chr13:30421558-30422058 - 31 3.95e-05 TTCCCCACTC CGCTCCCCGGGCGGCGGGCGGC TCCCTGGCTC chr12:89351329-89351829 - 47 3.95e-05 GGGCTAGGGG CGCAGGGCTGCGGGCGGGGCGC GTGGATTGAA chr5:44809181-44809681 + 54 3.95e-05 TTCTACCTGC GGCGCAGGCGGCGCGTGCACCG TTACGAGGAG chr11:62786990-62787490 - 52 4.35e-05 AGTCCGAGAG CGCCCACCGGCGGGCGGGGCGG CTGGTACGGC chr11:10807911-10808411 - 6 4.78e-05 GTGCAGGAGG GGGCCCGCTTGGAGGCGGCGGG TGGGC chr19:49818164-49818664 + 5 4.78e-05 GGCC CGCGCCGGGAGCGTGGTGGCCG ACGTGGTGTT chr21:33230010-33230510 + 22 4.78e-05 GCAGCGTGGC GGGGTCGCGGGAGCGGAGCGCG TGGCCAGCTG chr18:31101731-31102231 + 61 4.78e-05 CGGGGCAGGT CGCGGGCCGAGCGTCGGGCCGG GGTAGGAGGG chr6:47309781-47310281 + 51 4.78e-05 AGGCGTTCCA GGTAGAGCGGGGAGGGAGAGGG TGCCCCTTGG chr7:26291907-26292407 - 56 5.25e-05 CGGGCACCTG GGAACAGCGGGAAGGGCCCGCG CCTCTGGAAA chr12:119989896-11999039 + 27 5.25e-05 CTCTGGCCGA GGGGGCCGGACCGCAGCCGCCG CCCTCCCAGG chr1:151790170-151790670 - 58 5.25e-05 GCTGCAGCTG GGGTGAGGCGCGAGGCGGCGCA CTCGACGGCT chr6:57046447-57046947 + 40 5.76e-05 GGGCGGGAAG GGGAGTGGTGGCGGCTGCGGCA GTAGGGACAG chr15:99059147-99059647 + 27 5.76e-05 CCCTGCAGCC CCAGGCGCGGGGAGCCAGGCGG GATCGGCGCG chr21:37367934-37368434 + 2 6.91e-05 c gggagccgctgcctcggcggcC CTGGGGGTCC chr9:99819522-99820022 - 67 6.91e-05 GTGAGTGGGT GCGAGCCGTGGGAGAGAGGGGG GGCGCTGGCG chr2:241734767-241735267 + 23 6.91e-05 CGCGCGCTCG CGGGGTTGCGGCCCGGGCAGGG GGAGGGCCCG chr5:151771997-151772497 - 50 6.91e-05 GGACGCAGCA CGCGCACGCGGCGGACACGGCC ACGCGCCCCA chr19:50203765-50204265 - 31 7.55e-05 ATGTCATGCT GGGGGCGGGGGACTGGAGGCGA TGACTCAGGT chr7:70631075-70631575 + 55 7.55e-05 AGAACACCAG GGCAGGGGCTGGCGACTGGCGG CGGGGAAGCA chr5:115170281-115170781 - 24 7.55e-05 GGGAACCCCA GGCCGCGCCTGGCTAGGGACCG CGGAGAGGGC chr6:154995773-154996273 - 32 7.55e-05 TCGGAAAGGC CGGAGGGGCTGAGCAGGGACCG CACGGTCTAC chr7:74606695-74607195 - 69 8.25e-05 AGCAGGGGAA GGGGGTGGGAGAGGGGTCCCCA CTTCTGCCCT chr6:165986876-165987376 + 56 8.25e-05 GCACCTGCGG GTCTGGCGCGGCAGCCGCTGCG GTTTGCAGCT chr3:196942435-196942935 + 15 9.00e-05 GGGCATAGAC GTCCGGGTCGGGCGCCGCGGGG CGGAAGACGA chr6:80004288-80004788 + 3 9.00e-05 GC CGCACGGGTGGGGTCGCGGCCG CAGGCTCTTC chr6:7389705-7390205 + 63 9.80e-05 TCCTTTCCAT CGCAGAGCGGCGGCCTCCGGCG GCGCTCTCCA chr19:10332927-10333427 - 50 9.80e-05 TGAGGTGCGC GGGGGTCGTTGGCGGGGGCGCC CAAGCACCGG chr16:4371894-4372394 - 73 1.07e-04 GGCTGT CGGCGCCCCAGGACGGCGGGGG AGGGAGCGTA chr14:45134173-45134673 - 57 1.07e-04 GGAAGATGGC GGCGGCCGTTCCACAGCGGGCG TGGACCGTGG chr1:212432828-212433328 + 1 1.07e-04 . cccgggccGGGCAGACACCGCG CCCTGCCGAG chr13:112689789-11269028 + 12 1.07e-04 GTGCGCGCCC GGAGCAGGGGCAGGAGCCAGCG GGGCCCGGAG chr6:107028173-107028673 - 15 1.07e-04 GCCCTGAGCT CGCGGGGCGTCCCGAGGCTGGC AGGACACGGG chr8:141000267-141000767 + 77 1.07e-04 CAGGCATTGG GTCCGCTCCGGCGGAGGCCGGC CC chr19:11384134-11384634 + 10 1.16e-04 CCTCTAAGT GGCAGATCCCCGAGGGGGCGGG GCCAGCACTC chr9:131531427-131531927 - 5 1.26e-04 CTCCAGCAGC GGGTGGGGTGGGAGGCGTCCGG ACAG chr10:101354315-10135481 - 52 1.26e-04 ACACCAGGAA GGCCCCGCCAGCGGCCTCACGG CGTTTCTCCA chr5:36875667-36876167 - 54 1.37e-04 TGGAGCCGAG CGCGCGGGGAGAACCGCCGGCC CCGACTCAGC chr5:148383842-148384342 + 14 1.37e-04 CGGCGGCTGA GTGGGCCTGGGGACCGGGAGCG GGGTGGCAAA chr1:47508412-47508912 - 5 1.37e-04 CCAGCGCAGC CCCCCGGCGGGGGCGGGGAGCG AAGG chr7:43926566-43927066 + 14 1.48e-04 CACGAGGGCT GCGTCATGCGGGCGGGGCGCCG TGGGGCCACC chr10:1056518-1057018 + 66 1.48e-04 GCGGGACTGG GGCGGGACTTCCGGCGACACCG GAAGTGCATT chr3:183254349-183254849 + 56 1.48e-04 GGACAGGCCC GTGCGCGGGAGCCGCGAGGCGA ACGCCGCGCC chr4:86594313-86594813 + 1 1.48e-04 . GGGGGTGCGTTGAGCGCTCGGG GGTCAGGCAG chr11:72822032-72822532 + 17 1.61e-04 GCAGCGCAAG GCGCGCGCCGCGGCCGAGCGCA ACCTGCGCAA chr19:35717546-35718046 + 72 1.88e-04 CAGGTGCGGT CCGAGGGCGCCGGCCGGCCGCG GACTCCC chr9:37464727-37465227 - 47 1.88e-04 ACGCCAGGCT GTCTGCGGGGTGGGGCGGGGGC TGGTACTCCT chr4:54657637-54658137 + 29 1.88e-04 GGCGAGGAGG GGCGTGGCCGGCGCGCAGAGGG AGGGCGCTGG chr1:25771318-25771818 + 65 2.19e-04 GAGGTCAGGC GGGTGTGCGAGGCCCTGCCCCG TGAGAGCCGG chr8:42897165-42897665 - 12 2.36e-04 TCCCAGCCCA GCCCCGGCCGGGGTCCGCCCGG AACAGCGACG chr10:110567727-11056822 + 65 2.55e-04 GTCCCGCTAG TGCCCCGGCTGCGGGGTCGCGG AGAATTGGGG chr1:27575318-27575818 - 22 2.55e-04 AGCTGGAGAG CGCGGCCGGCCGGGGGAGCGAG CTAAGCGCGC chr1:94418592-94419092 - 35 2.95e-04 GTGCTGGCTG GGCGCCGGTTCGCCCGCGGGCA CAGAAGAATT chr6:137867312-137867812 - 36 2.95e-04 GCCCGAGGCA GACGGCACGGGGAGGCGCGGCG GTTACCTCTC chr19:12757776-12758276 - 31 3.17e-04 CAGCCAGGGT GGCGCCGGACCCCGGGGCCCGG GCATGGTCAC chr4:112285824-112286324 - 35 3.65e-04 TGGGAAGGCG CGGTCCGGGTCGGTGTACCGCG CACCAAACCC chr11:111936698-11193719 + 23 4.48e-04 TGCAAGCCTG GTGTGTGTGTGCGCGCGCGCGG CTGCAAGCGC chr4:26320596-26321096 + 62 5.12e-04 CCCTACTCTG CGGGCGGCGCGAGGCGTCTGGC TCTTCGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGSSGGSRGSGRSSSSG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:53794792-53795292 6.2e-11 [+1]_78 chr1:85201467-85201967 4.3e-09 1_[+1]_77 chr12:69585566-69586066 1.5e-08 73_[+1]_5 chr7:100271747-100272247 1.5e-08 52_[-1]_26 chr19:44955078-44955578 2.3e-08 77_[+1]_1 chr6:131135276-131135776 3.5e-08 45_[-1]_33 chr7:6374485-6374985 6.5e-08 13_[-1]_65 chr13:102597000-10259750 6.5e-08 28_[+1]_50 chr11:107017591-10701809 9.5e-08 42_[+1]_36 chr2:206085539-206086039 9.5e-08 69_[-1]_9 chr16:68084542-68085042 1.4e-07 20_[+1]_58 chr1:201982721-201983221 2e-07 19_[+1]_59 chr1:149390381-149390881 2e-07 49_[+1]_29 chr9:137188798-137189298 3.3e-07 45_[-1]_33 chr17:8162760-8163260 3.3e-07 40_[+1]_38 chr8:55879908-55880408 3.8e-07 37_[+1]_41 chr12:65279185-65279685 3.8e-07 21_[-1]_57 chr8:66712569-66713069 3.8e-07 72_[+1]_6 chr1:156054795-156055295 3.8e-07 62_[+1]_16 chr3:194139379-194139879 3.8e-07 61_[-1]_17 chr12:121210077-12121057 4.5e-07 31_[+1]_47 chrX:129654593-129655093 5.3e-07 64_[+1]_14 chr7:92833144-92833644 6.2e-07 2_[+1]_76 chr17:79183360-79183860 7.2e-07 7_[+1]_71 chr15:78077304-78077804 9.7e-07 76_[-1]_2 chr1:64745538-64746038 9.7e-07 37_[+1]_41 chr8:28701546-28702046 9.7e-07 4_[+1]_74 chr1:178542479-178542979 1.1e-06 53_[-1]_25 chr20:58389390-58389890 1.1e-06 38_[+1]_40 chr7:130733536-130734036 1.3e-06 57_[+1]_21 chr7:74658042-74658542 1.3e-06 72_[+1]_6 chr1:52842891-52843391 1.3e-06 60_[+1]_18 chr1:15526868-15527368 1.5e-06 35_[+1]_43 chr1:116372995-116373495 2e-06 38_[+1]_40 chr12:110281791-11028229 2e-06 28_[+1]_50 chr18:26549150-26549650 2e-06 71_[-1]_7 chr20:47501699-47502199 2.3e-06 41_[+1]_37 chr17:7561901-7562401 2.6e-06 67_[+1]_11 chr6:71288463-71288963 2.6e-06 78_[-1] chr4:7042410-7042910 3e-06 64_[-1]_14 chr11:62787229-62787729 3e-06 61_[+1]_17 chr6:43059643-43060143 3.4e-06 23_[-1]_55 chr1:50422880-50423380 3.4e-06 60_[-1]_18 chr13:106535483-10653598 3.4e-06 9_[-1]_69 chr9:68705111-68705611 3.4e-06 22_[-1]_56 chr10:98030479-98030979 3.4e-06 24_[+1]_54 chr6:41073555-41074055 3.4e-06 25_[-1]_53 chr11:65961753-65962253 3.4e-06 16_[+1]_62 chr8:47960758-47961258 3.8e-06 60_[+1]_18 chr9:126651140-126651640 3.8e-06 60_[+1]_18 chr1:228082323-228082823 4.4e-06 44_[-1]_34 chr1:224183297-224183797 4.4e-06 47_[-1]_31 chr22:46737707-46738207 4.9e-06 17_[-1]_61 chr19:1651666-1652166 4.9e-06 36_[-1]_42 chr17:80477150-80477650 4.9e-06 27_[+1]_51 chr4:1870657-1871157 4.9e-06 43_[-1]_35 chr17:56960843-56961343 5.6e-06 36_[-1]_42 chr5:134176794-134177294 5.6e-06 78_[+1] chr17:732011-732511 6.3e-06 70_[-1]_8 chr7:105532098-105532598 6.3e-06 37_[-1]_41 chr17:2050400-2050900 7.1e-06 77_[+1]_1 chr17:48908191-48908691 7.1e-06 31_[+1]_47 chr8:9002885-9003385 8e-06 37_[+1]_41 chr5:143403515-143404015 9e-06 36_[+1]_42 chr1:15523958-15524458 9e-06 4_[-1]_74 chr17:81387303-81387803 1e-05 72_[-1]_6 chr9:116687184-116687684 1.1e-05 78_[+1] chr1:1273674-1274174 1.3e-05 10_[+1]_68 chr6:149717319-149717819 1.3e-05 27_[+1]_51 chr12:56079325-56079825 1.3e-05 21_[+1]_57 chr13:46796940-46797440 1.4e-05 29_[-1]_49 chr15:52568782-52569282 1.4e-05 [-1]_78 chr13:27920112-27920612 1.6e-05 38_[-1]_40 chrX:129654872-129655372 1.6e-05 6_[-1]_72 chr1:207868986-207869486 1.8e-05 17_[-1]_61 chr2:127408091-127408591 1.8e-05 59_[+1]_19 chr16:31108407-31108907 1.9e-05 38_[-1]_40 chr13:110307182-11030768 1.9e-05 22_[-1]_56 chr1:92485725-92486225 1.9e-05 27_[-1]_51 chr10:22340675-22341175 1.9e-05 63_[-1]_15 chr20:25248189-25248689 2.2e-05 73_[-1]_5 chr5:181190362-181190862 2.2e-05 47_[-1]_31 chr2:199850824-199851324 2.2e-05 6_[-1]_72 chr11:64230083-64230583 2.4e-05 10_[-1]_68 chr19:1407238-1407738 2.4e-05 10_[-1]_68 chrX:118346203-118346703 2.4e-05 61_[-1]_17 chr1:42334137-42334637 2.4e-05 72_[+1]_6 chr2:222424149-222424649 2.7e-05 1_[-1]_77 chr12:49367098-49367598 2.7e-05 11_[+1]_67 chr7:99919030-99919530 2.7e-05 33_[-1]_45 chr17:81891817-81892317 2.9e-05 45_[+1]_33 chr17:78168474-78168974 2.9e-05 48_[+1]_30 chr19:42253431-42253931 2.9e-05 23_[-1]_55 chr15:58749227-58749727 3.2e-05 17_[-1]_61 chr16:88650978-88651478 3.2e-05 42_[+1]_36 chr9:6681102-6681602 3.2e-05 56_[-1]_22 chr12:27244272-27244772 3.2e-05 2_[+1]_76 chr1:153775043-153775543 3.6e-05 37_[-1]_41 chr5:95731132-95731632 3.6e-05 26_[+1]_52 chr10:69630244-69630744 3.6e-05 6_[+1]_72 chr16:69330606-69331106 3.6e-05 59_[-1]_19 chr15:81000515-81001015 3.9e-05 56_[+1]_22 chr13:30421558-30422058 3.9e-05 30_[-1]_48 chr12:89351329-89351829 3.9e-05 46_[-1]_32 chr5:44809181-44809681 3.9e-05 53_[+1]_25 chr11:62786990-62787490 4.3e-05 51_[-1]_27 chr11:10807911-10808411 4.8e-05 5_[-1]_73 chr19:49818164-49818664 4.8e-05 4_[+1]_74 chr21:33230010-33230510 4.8e-05 21_[+1]_57 chr18:31101731-31102231 4.8e-05 60_[+1]_18 chr6:47309781-47310281 4.8e-05 50_[+1]_28 chr7:26291907-26292407 5.3e-05 55_[-1]_23 chr12:119989896-11999039 5.3e-05 26_[+1]_52 chr1:151790170-151790670 5.3e-05 57_[-1]_21 chr6:57046447-57046947 5.8e-05 39_[+1]_39 chr15:99059147-99059647 5.8e-05 26_[+1]_52 chr21:37367934-37368434 6.9e-05 1_[+1]_77 chr9:99819522-99820022 6.9e-05 66_[-1]_12 chr2:241734767-241735267 6.9e-05 22_[+1]_56 chr5:151771997-151772497 6.9e-05 49_[-1]_29 chr19:50203765-50204265 7.6e-05 30_[-1]_48 chr7:70631075-70631575 7.6e-05 54_[+1]_24 chr5:115170281-115170781 7.6e-05 23_[-1]_55 chr6:154995773-154996273 7.6e-05 31_[-1]_47 chr7:74606695-74607195 8.2e-05 68_[-1]_10 chr6:165986876-165987376 8.2e-05 55_[+1]_23 chr3:196942435-196942935 9e-05 14_[+1]_64 chr6:80004288-80004788 9e-05 2_[+1]_76 chr6:7389705-7390205 9.8e-05 62_[+1]_16 chr19:10332927-10333427 9.8e-05 49_[-1]_29 chr16:4371894-4372394 0.00011 72_[-1]_6 chr14:45134173-45134673 0.00011 56_[-1]_22 chr1:212432828-212433328 0.00011 [+1]_78 chr13:112689789-11269028 0.00011 11_[+1]_67 chr6:107028173-107028673 0.00011 14_[-1]_64 chr8:141000267-141000767 0.00011 76_[+1]_2 chr19:11384134-11384634 0.00012 9_[+1]_69 chr9:131531427-131531927 0.00013 4_[-1]_74 chr10:101354315-10135481 0.00013 51_[-1]_27 chr5:36875667-36876167 0.00014 53_[-1]_25 chr5:148383842-148384342 0.00014 13_[+1]_65 chr1:47508412-47508912 0.00014 4_[-1]_74 chr7:43926566-43927066 0.00015 13_[+1]_65 chr10:1056518-1057018 0.00015 65_[+1]_13 chr3:183254349-183254849 0.00015 55_[+1]_23 chr4:86594313-86594813 0.00015 [+1]_78 chr11:72822032-72822532 0.00016 16_[+1]_62 chr19:35717546-35718046 0.00019 71_[+1]_7 chr9:37464727-37465227 0.00019 46_[-1]_32 chr4:54657637-54658137 0.00019 28_[+1]_50 chr1:25771318-25771818 0.00022 64_[+1]_14 chr8:42897165-42897665 0.00024 11_[-1]_67 chr10:110567727-11056822 0.00025 64_[+1]_14 chr1:27575318-27575818 0.00025 21_[-1]_57 chr1:94418592-94419092 0.00029 34_[-1]_44 chr6:137867312-137867812 0.00029 35_[-1]_43 chr19:12757776-12758276 0.00032 30_[-1]_48 chr4:112285824-112286324 0.00036 34_[-1]_44 chr11:111936698-11193719 0.00045 22_[+1]_56 chr4:26320596-26321096 0.00051 61_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGSSGGSRGSGRSSSSG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSGGSGSSGGSRGSGRSSSSG width=22 seqs=160 chr6:53794792-53795292 ( 1) GGCGGCGGGGGCGGCGACGGCG 1 chr1:85201467-85201967 ( 2) GGCGGAGGCGGAGGCGGCGGCG 1 chr12:69585566-69586066 ( 74) GGCGGAGCCTGGAGCGACGGGG 1 chr7:100271747-100272247 ( 53) CGCGGAGGGGGCGGGGGCCGCG 1 chr19:44955078-44955578 ( 78) GGCGGGGCTGGCGGCGGGGGCG 1 chr6:131135276-131135776 ( 46) GGCAGCGGCAGCAGCGGCGGCG 1 chr7:6374485-6374985 ( 14) GGCCGCGGCGGCGGCGGCAGGG 1 chr13:102597000-10259750 ( 29) CGCGGGGGCGCGGGCGGCCGGG 1 chr11:107017591-10701809 ( 43) GGCAGTGGCAGCGGCGGCGGCG 1 chr2:206085539-206086039 ( 70) GGCTGGGCGGGCGGCGAGCGCG 1 chr16:68084542-68085042 ( 21) GGGTGGGCCTGCGGCGACCGCG 1 chr1:201982721-201983221 ( 20) CGCTGCGGCGGGAGCGGCCCGG 1 chr1:149390381-149390881 ( 50) GGCGGCGGCTGAGGCGGCGGCC 1 chr9:137188798-137189298 ( 46) CTGGGGGCCGGGAGGGGCGGCG 1 chr17:8162760-8163260 ( 41) GGCACTGCGGGCGGGGGCGGGG 1 chr8:55879908-55880408 ( 38) GGCAGTGGGTGCAGGGGCCGCG 1 chr12:65279185-65279685 ( 22) GGGAGGGCGGGCGGCGGGTGCG 1 chr8:66712569-66713069 ( 73) GGGGCCGGCGGGAGGGTCCGCG 1 chr1:156054795-156055295 ( 63) GGCAGAGGGGGCAGCGGCTGGG 1 chr3:194139379-194139879 ( 62) GGCGGTGGGGGAGGAGGGCGCG 1 chr12:121210077-12121057 ( 32) GGCCGCGCGGGGGGCGCGGCGG 1 chrX:129654593-129655093 ( 65) GGCGGCTCCGGGAGCGGCAGCG 1 chr7:92833144-92833644 ( 3) GGCGCCGCTGGGGCGGGCGGGG 1 chr17:79183360-79183860 ( 8) CGGGGAGGCTGGAGAGAGCGCG 1 chr15:78077304-78077804 ( 77) CGCGGCGCAGGGGGCGGCCGCG 1 chr1:64745538-64746038 ( 38) GGGGGAGCGGGGGTAGAGGGGG 1 chr8:28701546-28702046 ( 5) GGACGCGGCGGGAGGGACCGGG 1 chr1:178542479-178542979 ( 54) CGGGGGCGCGGGGGCGTCGGGG 1 chr20:58389390-58389890 ( 39) GTCGCGGGGGGCGGCGAGGCCG 1 chr7:130733536-130734036 ( 58) CGCGGCGCCGCCCGCGCCGGGG 1 chr7:74658042-74658542 ( 73) GGGTGGGGCGGCACGGACGCGG 1 chr1:52842891-52843391 ( 61) GGGGGAGGCGGCCTGGGCGCCG 1 chr1:15526868-15527368 ( 36) CGGAGGGCGGCGGGGGAGGGGG 1 chr1:116372995-116373495 ( 39) GGCGCGGGCTGGAGCTGCGGCG 1 chr12:110281791-11028229 ( 29) GGCGGAGGGTCGGGCCAGCGCG 1 chr18:26549150-26549650 ( 72) GGGGCTGGCTGGACCGGCGCGG 1 chr20:47501699-47502199 ( 42) GTGGCGGCCGGCGGCGGCTGCG 1 chr17:7561901-7562401 ( 68) GGCGGGGCCGCCGCCGTCGCCG 1 chr6:71288463-71288963 ( 79) GGCGGCCCCGGGACCGCCGCCG 1 chr4:7042410-7042910 ( 65) GGAGGGGCCTGGAGAGCCGGGG 1 chr11:62787229-62787729 ( 62) CGGGGCCGTGGCGGCCGCGGCG 1 chr6:43059643-43060143 ( 24) GTCGGTGGCGCAGGGGGCGGGG 1 chr1:50422880-50423380 ( 61) GGAGGCGCGTGCAGCGCCAGCG 1 chr13:106535483-10653598 ( 10) CGCGGCGGGGCGGGGCCCCGCG 1 chr9:68705111-68705611 ( 23) CGCGGCGCGTTCGGGGACCGGG 1 chr10:98030479-98030979 ( 25) CGGGGTGGGGGGCGCCGGCGCG 1 chr6:41073555-41074055 ( 26) CGGGCTGGGAGGAGGGGCGCGG 1 chr11:65961753-65962253 ( 17) GGGAGCGGGCGGCGCGGGGCCG 1 chr8:47960758-47961258 ( 61) CCGCGCGCCGGCGGGGAGGGCG 1 chr9:126651140-126651640 ( 61) GGGTGGGGCACAGGGGGCGGGG 1 chr1:228082323-228082823 ( 45) GGGGGCGGGGCCGGGGACACCC 1 chr1:224183297-224183797 ( 48) GGCGGCCCGAGCGGCGACGGGA 1 chr22:46737707-46738207 ( 18) GGACCCGGCTGGGGGGACCGGG 1 chr19:1651666-1652166 ( 37) GGGGGGCCCGGCCCGGGCGCCG 1 chr17:80477150-80477650 ( 28) CGGGCAGGCGGCGTCGCCGGGG 1 chr4:1870657-1871157 ( 44) CGCGGGGCCTGGGGCCCGCGGG 1 chr17:56960843-56961343 ( 37) GGCTCCGGCGGGGGCGAGCCGC 1 chr5:134176794-134177294 ( 79) GGCTGGGCGGGCCCAGGCCGGG 1 chr17:732011-732511 ( 71) GGCGGAGGCGGGAAGGGCCGCG 1 chr7:105532098-105532598 ( 38) CGGGGCTGCAGGAGAGGCGCCG 1 chr17:2050400-2050900 ( 78) GGGGGTCCCAGGAGGGCCGGGG 1 chr17:48908191-48908691 ( 32) CGGTGGTGCGGGAGCGGGCGGG 1 chr8:9002885-9003385 ( 38) GTCGCCGCGGCCGGAGGGCGGG 1 chr5:143403515-143404015 ( 37) GGGCCGCGCGGCGGCCGCGGGG 1 chr1:15523958-15524458 ( 5) GGCGGCTCCTGCGGCGGTGCCG 1 chr17:81387303-81387803 ( 73) GCGGGAGGGGCGGCCGAGCGCG 1 chr9:116687184-116687684 ( 79) GTGCCGGCGTGCAGCGGCCGCG 1 chr1:1273674-1274174 ( 11) GGGGCGGTGAGGAGGGAGGGGG 1 chr6:149717319-149717819 ( 28) GGGTGGGGTGGGAGACACGCCG 1 chr12:56079325-56079825 ( 22) GGGAGAGGCCCGGCCGGCGCCG 1 chr13:46796940-46797440 ( 30) GGGCGGGGCTGAGGCGAGGCCC 1 chr15:52568782-52569282 ( 1) GGCGGAGGCGGCCCGGCGGGCC 1 chr13:27920112-27920612 ( 39) CGCGGGGTCGTCGGCGAGGGGG 1 chrX:129654872-129655372 ( 7) GTGCGTGCCTGGAGGGGGGCGG 1 chr1:207868986-207869486 ( 18) GGTGGCGCCGCGCGGGACGCCG 1 chr2:127408091-127408591 ( 60) GGCGCTGCGGGGAGCGGTGGCC 1 chr16:31108407-31108907 ( 39) GGGGCCGGCTTGGGAGGGTGCG 1 chr13:110307182-11030768 ( 23) GGCGCCGGCCCCGGGGGCTCGG 1 chr1:92485725-92486225 ( 28) GGGGGCGGCCGCGGGGACTCGC 1 chr10:22340675-22341175 ( 64) GGGTGCGGCGGCCGAGATGCGG 1 chr20:25248189-25248689 ( 74) CGCGGCTCCGGGACCGGCGCCC 1 chr5:181190362-181190862 ( 48) GGAGGAGCGAGCGGGGTCTGCG 1 chr2:199850824-199851324 ( 7) CGCAGAGCGGCAGGCGCGGCCG 1 chr11:64230083-64230583 ( 11) GGAGCGGGCGGGACAGAGCCCG 1 chr19:1407238-1407738 ( 11) CGCGCCGCCGCAGTCGGGGCCG 1 chrX:118346203-118346703 ( 62) GGGTGAGGGGGCCGGCGCCGCC 1 chr1:42334137-42334637 ( 73) GGAGCTGGGAGGGGGGGCGGGA 1 chr2:222424149-222424649 ( 2) GCGGCCCCGGGCGGCCACGGGG 1 chr12:49367098-49367598 ( 12) CGGGGCGGGGCGAGCCGCTGCC 1 chr7:99919030-99919530 ( 34) CTGGGCGCCGGGCGGCGGCCCG 1 chr17:81891817-81892317 ( 46) GGGCGCGGCTTCGGCGGGCGGC 1 chr17:78168474-78168974 ( 49) CGGGGAGGGCGGGCCGAGGGCA 1 chr19:42253431-42253931 ( 24) GGGGGTGGGGCCGGGGTGCGGA 1 chr15:58749227-58749727 ( 18) GCGAGCGCCGGGGGCGCCGCGA 1 chr16:88650978-88651478 ( 43) GGCAGCCCCAGCCCAGGCGGGG 1 chr9:6681102-6681602 ( 57) CGCGGAGGCACCGGCGGCCCAG 1 chr12:27244272-27244772 ( 3) CGGGGAACCTGCGGCGACGGCC 1 chr1:153775043-153775543 ( 38) GTGCGGGTGTGGGGCGGCCCCG 1 chr5:95731132-95731632 ( 27) CGAGGAGGCGCGGCGGAGAGGG 1 chr10:69630244-69630744 ( 7) CGCCGCGGGCCGGGCGCGCGGG 1 chr16:69330606-69331106 ( 60) GGGAGGGCGAGCGGAGACGCAG 1 chr15:81000515-81001015 ( 57) GCGTCCGCGTTGGGCGGCGGCG 1 chr13:30421558-30422058 ( 31) CGCTCCCCGGGCGGCGGGCGGC 1 chr12:89351329-89351829 ( 47) CGCAGGGCTGCGGGCGGGGCGC 1 chr5:44809181-44809681 ( 54) GGCGCAGGCGGCGCGTGCACCG 1 chr11:62786990-62787490 ( 52) CGCCCACCGGCGGGCGGGGCGG 1 chr11:10807911-10808411 ( 6) GGGCCCGCTTGGAGGCGGCGGG 1 chr19:49818164-49818664 ( 5) CGCGCCGGGAGCGTGGTGGCCG 1 chr21:33230010-33230510 ( 22) GGGGTCGCGGGAGCGGAGCGCG 1 chr18:31101731-31102231 ( 61) CGCGGGCCGAGCGTCGGGCCGG 1 chr6:47309781-47310281 ( 51) GGTAGAGCGGGGAGGGAGAGGG 1 chr7:26291907-26292407 ( 56) GGAACAGCGGGAAGGGCCCGCG 1 chr12:119989896-11999039 ( 27) GGGGGCCGGACCGCAGCCGCCG 1 chr1:151790170-151790670 ( 58) GGGTGAGGCGCGAGGCGGCGCA 1 chr6:57046447-57046947 ( 40) GGGAGTGGTGGCGGCTGCGGCA 1 chr15:99059147-99059647 ( 27) CCAGGCGCGGGGAGCCAGGCGG 1 chr21:37367934-37368434 ( 2) GGGAGCCGCTGCCTCGGCGGCC 1 chr9:99819522-99820022 ( 67) GCGAGCCGTGGGAGAGAGGGGG 1 chr2:241734767-241735267 ( 23) CGGGGTTGCGGCCCGGGCAGGG 1 chr5:151771997-151772497 ( 50) CGCGCACGCGGCGGACACGGCC 1 chr19:50203765-50204265 ( 31) GGGGGCGGGGGACTGGAGGCGA 1 chr7:70631075-70631575 ( 55) GGCAGGGGCTGGCGACTGGCGG 1 chr5:115170281-115170781 ( 24) GGCCGCGCCTGGCTAGGGACCG 1 chr6:154995773-154996273 ( 32) CGGAGGGGCTGAGCAGGGACCG 1 chr7:74606695-74607195 ( 69) GGGGGTGGGAGAGGGGTCCCCA 1 chr6:165986876-165987376 ( 56) GTCTGGCGCGGCAGCCGCTGCG 1 chr3:196942435-196942935 ( 15) GTCCGGGTCGGGCGCCGCGGGG 1 chr6:80004288-80004788 ( 3) CGCACGGGTGGGGTCGCGGCCG 1 chr6:7389705-7390205 ( 63) CGCAGAGCGGCGGCCTCCGGCG 1 chr19:10332927-10333427 ( 50) GGGGGTCGTTGGCGGGGGCGCC 1 chr16:4371894-4372394 ( 73) CGGCGCCCCAGGACGGCGGGGG 1 chr14:45134173-45134673 ( 57) GGCGGCCGTTCCACAGCGGGCG 1 chr1:212432828-212433328 ( 1) CCCGGGCCGGGCAGACACCGCG 1 chr13:112689789-11269028 ( 12) GGAGCAGGGGCAGGAGCCAGCG 1 chr6:107028173-107028673 ( 15) CGCGGGGCGTCCCGAGGCTGGC 1 chr8:141000267-141000767 ( 77) GTCCGCTCCGGCGGAGGCCGGC 1 chr19:11384134-11384634 ( 10) GGCAGATCCCCGAGGGGGCGGG 1 chr9:131531427-131531927 ( 5) GGGTGGGGTGGGAGGCGTCCGG 1 chr10:101354315-10135481 ( 52) GGCCCCGCCAGCGGCCTCACGG 1 chr5:36875667-36876167 ( 54) CGCGCGGGGAGAACCGCCGGCC 1 chr5:148383842-148384342 ( 14) GTGGGCCTGGGGACCGGGAGCG 1 chr1:47508412-47508912 ( 5) CCCCCGGCGGGGGCGGGGAGCG 1 chr7:43926566-43927066 ( 14) GCGTCATGCGGGCGGGGCGCCG 1 chr10:1056518-1057018 ( 66) GGCGGGACTTCCGGCGACACCG 1 chr3:183254349-183254849 ( 56) GTGCGCGGGAGCCGCGAGGCGA 1 chr4:86594313-86594813 ( 1) GGGGGTGCGTTGAGCGCTCGGG 1 chr11:72822032-72822532 ( 17) GCGCGCGCCGCGGCCGAGCGCA 1 chr19:35717546-35718046 ( 72) CCGAGGGCGCCGGCCGGCCGCG 1 chr9:37464727-37465227 ( 47) GTCTGCGGGGTGGGGCGGGGGC 1 chr4:54657637-54658137 ( 29) GGCGTGGCCGGCGCGCAGAGGG 1 chr1:25771318-25771818 ( 65) GGGTGTGCGAGGCCCTGCCCCG 1 chr8:42897165-42897665 ( 12) GCCCCGGCCGGGGTCCGCCCGG 1 chr10:110567727-11056822 ( 65) TGCCCCGGCTGCGGGGTCGCGG 1 chr1:27575318-27575818 ( 22) CGCGGCCGGCCGGGGGAGCGAG 1 chr1:94418592-94419092 ( 35) GGCGCCGGTTCGCCCGCGGGCA 1 chr6:137867312-137867812 ( 36) GACGGCACGGGGAGGCGCGGCG 1 chr19:12757776-12758276 ( 31) GGCGCCGGACCCCGGGGCCCGG 1 chr4:112285824-112286324 ( 35) CGGTCCGGGTCGGTGTACCGCG 1 chr11:111936698-11193719 ( 23) GTGTGTGTGTGCGCGCGCGCGG 1 chr4:26320596-26321096 ( 62) CGGGCGGCGCGAGGCGTCTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGSSGGSRGSGRSSSSG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.0458 E= 1.0e-064 -1397 13 125 -510 -510 -181 151 -110 -164 73 63 -410 -45 -93 98 -71 -1397 -12 134 -410 -19 51 -2 -78 -351 -99 145 -193 -1397 61 88 -251 -410 75 55 -129 -64 -206 99 7 -1397 -31 134 -229 -110 53 77 -1397 39 -87 98 -1397 -510 -52 133 -151 -51 79 32 -1397 -1397 -82 148 -251 36 -99 84 -164 -1397 104 42 -278 -110 18 82 -164 -1397 27 120 -1397 -351 91 63 -1397 -151 -106 146 -1397 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGSSGGSRGSGRSSSSG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 160 E= 1.0e-064 0.000000 0.312500 0.681250 0.006250 0.006250 0.081250 0.812500 0.100000 0.068750 0.475000 0.443750 0.012500 0.156250 0.150000 0.562500 0.131250 0.000000 0.262500 0.725000 0.012500 0.187500 0.406250 0.281250 0.125000 0.018750 0.143750 0.781250 0.056250 0.000000 0.437500 0.525000 0.037500 0.012500 0.481250 0.418750 0.087500 0.137500 0.068750 0.568750 0.225000 0.000000 0.231250 0.725000 0.043750 0.100000 0.412500 0.487500 0.000000 0.281250 0.156250 0.562500 0.000000 0.006250 0.200000 0.718750 0.075000 0.150000 0.493750 0.356250 0.000000 0.000000 0.162500 0.800000 0.037500 0.275000 0.143750 0.512500 0.068750 0.000000 0.587500 0.381250 0.031250 0.100000 0.325000 0.506250 0.068750 0.000000 0.343750 0.656250 0.000000 0.018750 0.537500 0.443750 0.000000 0.075000 0.137500 0.787500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGSGSSGGSRGSGRSSSSG MEME-1 regular expression -------------------------------------------------------------------------------- [GC]G[CG]G[GC][CG]G[GC][CG][GT][GC][GC][GA][GC][CG]G[GA][CG][GC][GC][CG]G -------------------------------------------------------------------------------- Time 370.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TDTDTTWMWKTKWWTNWTTWTW MEME-2 width = 22 sites = 120 llr = 1157 E-value = 3.5e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif TDTDTTWMWKTKWWTNWTTWTW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 22:4115551324232423425 pos.-specific C ::21:2231111:212211:21 probability G :5:2:21::31222:2:1:21: matrix T 8382953245544474476554 bits 2.2 2.0 1.8 * 1.6 * Relative 1.3 * * * Entropy 1.1 * * * * (13.9 bits) 0.9 * * * * * * 0.7 * * * ** * *** * 0.4 *** ***** * * * **** * 0.2 ********************** 0.0 ---------------------- Multilevel TGTATTAAATTTATTTTTTTTA consensus ATCT CTCTGAGTAAAA AAAT sequence A G C G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDTDTTWMWKTKWWTNWTTWTW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr5:125275431-125275931 + 39 1.56e-09 CTTTCTTCTT TTTATTCCCTTTATTTTTTTTT CTTTTTTATC chr7:82155665-82156165 - 30 5.80e-09 GTATGCAGGA TATATTTCTTAGTATTATTTTA CTGACTACTT chr12:120302421-12030292 + 77 1.30e-08 TGTCAAATAA TATGTCAAAGttttttcttttt ct chr22:38606556-38607056 + 37 2.32e-08 GCAGTCATCA TGTCTTAAATTTATTTTCTTCT GGTGTCAGTA chr6:31072796-31073296 - 10 5.77e-08 TATTGTCTTC TTTGTTAATATAAGTTTTAATA AAAGTCACT chr1:236301725-236302225 - 35 6.87e-08 GCAGAAAGAA TGTTTCCAATAGATTAATATTA AATTCGTATG chr1:218345904-218346404 + 67 8.17e-08 GAACCGCTCC TTCTTTAAATATATAAATTTCA GCCCAGGTCA chr12:42587708-42588208 + 30 1.35e-07 TGTCATGGGA tttttttttgttttttttttCC TTTCTAGAGT chrX:41351053-41351553 + 56 1.87e-07 GTTTACATAC TACATTAATGTGGTTTAATTTT AATTACACTT chr10:133144025-13314452 + 3 2.19e-07 aa agtattaaagtctttgatcttt ctgaaaagaa chr12:124036578-12403707 + 22 2.57e-07 CTGTGTGCTT TGTATGATTTAAAATTTTCATT TGGCAATTAA chr5:10583935-10584435 + 46 3.50e-07 TTTGGCTTTG ATTTTCAAAGTGATTTTTATGA ACTAATAACA chr1:8622059-8622559 - 38 3.50e-07 TGTGAAATAA AATTGTAAATATTTTTATTTTA CCTATTAGAT chr16:4956305-4956805 - 32 4.07e-07 ATTCTAATAT TGCATTTATTCGTTTTATATAT CTGTGGGTTC chr2:175807171-175807671 + 42 4.07e-07 AGTGAGCATT TGTTTTTCAGGAAATCTTTATA TCCAAAGTGT chr2:199739945-199740445 + 31 4.72e-07 CTCGGTTCAT TTTATGACTGTTAGTCATCTTT ATGAGCTACC chr10:15808382-15808882 + 59 7.32e-07 TTTCCTCCTT AGCATTAAATTCAGTTTCTTTA TATGAACAGT chr1:245079166-245079666 + 34 8.44e-07 TTGGCTGTTT TGTTTTAACTTATTTTCGTATA ATTTTGGTTC chr1:58515980-58516480 - 3 8.44e-07 GATGACATGG TGTATGATTGTTTTTGATTGTC AT chr10:136816-137316 + 5 9.71e-07 TGTA TACATTACATAGTGTTATATAT GGTGTGTAGG chr8:26457977-26458477 + 22 9.71e-07 GATTTGTTAT TTCATTCATTTGGTTGTTAAat tcacacatgt chr1:51519453-51519953 - 6 9.71e-07 ATAAAGTGCC ATTATTATTTTCTATCATTATC TCATT chr6:43809848-43810348 + 49 1.12e-06 tcagccagta tttgttaatcaaattaaATTGT CTTTTGTCGT chr1:169485142-169485642 - 50 1.12e-06 TGCTCTTCTT TGTGTTCATGATTTTCTGTTTT CTTCGGCTCT chr8:37702754-37703254 + 49 1.12e-06 TAATGTGCTG TGCATTAATGTGTTACATCATT TACAAAGAGG chr1:211592070-211592570 + 26 1.12e-06 CATCAAGAGC AATATTCATTTGGTTTCTTTTC CCAGTCAAGG chr17:14622761-14623261 - 58 1.12e-06 GTAGCTAGTC TGTGTCTAATTGTGTTTGTTTT TCCCCCTGCA chr6:127737078-127737578 + 20 1.47e-06 GAGGTTTTTA TTTTTTCAAGTCATACATATAT CTTCAGGACA chr3:197211642-197212142 - 24 1.68e-06 TCCCATGGTG TATATGTACCACATTTTTTTTA GCCAGTCTGT chr1:116878410-116878910 - 71 1.68e-06 ACCGGTCC TGTATCCATTAAAGTAATAACA TCGTTGCATG chr6:106084818-106085318 - 29 1.68e-06 AATCCTAAAA AATATGTCTGTTTATCTTTAAA ATTTCTTTTC chr1:224872952-224873452 - 11 1.91e-06 CACTGCAACA TTTTTTACAGTTGCTGCTTTTC TCAAAGACTT chr19:41262392-41262892 + 67 2.18e-06 GCAACTATCC TGTGTTATCTTTATTATTCGAT GCCGCCTGCC chr10:113087695-11308819 + 25 2.48e-06 TGGCTGCTGT TGTATAACTTTTTCCTTTATTT TTGTCAATTT chr1:16248864-16249364 - 37 2.82e-06 GTTTTGCCTT TGTTTTGTTTTGAAATTTAAAT CCTAATTTCA chr2:174334933-174335433 + 11 2.82e-06 CGCATTTGCT TGTTTTAACCGGAGTAATTTTT CGTTATGGCT chr10:74175661-74176161 + 52 3.19e-06 ACTCTTCAAC TGCATTAAACTGTAAGATTAGA GCCAGGAGTT chr13:97223459-97223959 - 51 3.19e-06 CTGAAGAAAC TTCCTCTTATTTAAAGATTATA AGAATGTTCC chr6:10311230-10311730 + 37 3.62e-06 AGCATTCTGG TATGTTTAAAAGAAAATTTGTA CGCAAGGTAC chr3:125512236-125512736 - 2 3.62e-06 GTATTATTGT TGTGTGCCTGTTTGTATTCTTT A chr15:89334910-89335410 + 45 3.62e-06 gAAGGGAGGT TATGATTAACTTTTAGTTTATT CCTCCCTCAG chr19:999081-999581 - 71 4.09e-06 ACCATCTT TTTGTTCATTTCCTTCTTATTT AGTGACCATC chr6:111888843-111889343 + 32 5.21e-06 TAGGAGTCTA TGTATCCCTTTTGCTCATTTAC TTGCTCAGGT chr1:33037111-33037611 + 27 5.21e-06 taaagattcg tgtaacaaagttgttaattgca acacttagcc chr7:149497971-149498471 + 76 5.21e-06 TGCCCACCTG TGTTTGAAATGGAATAAATACT TCC chr6:83464733-83465233 - 67 5.21e-06 CGTCACTGAA TTTATTACAGTTGTTGAGCAAA AAGGTAGGAA chr3:159883432-159883932 + 33 5.21e-06 CATTAGCTGT TATGTCATATAATTTCCTTTTC CTGAGAGTAA chr18:34493180-34493680 - 18 5.87e-06 TAGGAGCCGC TTTCTTATTATTTAATAATGTT GGAAGTGCCG chr1:81954732-81955232 - 26 5.87e-06 AATCACTAAG TTTATTTACTCTATTCCATTCA CCCAGTCATA chr6:28769830-28770330 + 50 5.87e-06 acctgctgtc agtgtaaatgttaataagttta tccttacccc chr3:169526444-169526944 + 15 6.60e-06 TATTTTTTTG TATCTGTACCCTATTTTTTTTT AATTCTGAGA chr15:60001181-60001681 + 32 6.60e-06 GCAAAGCCCA AGTTTTAAATGTGTTTCTCACA ACTTCTCTCC chr6:85125189-85125689 + 56 6.60e-06 GCTCACTGAA ATTTTCTAAAACTTTATTTGTA AGATTCCAAA chr5:76585867-76586367 + 8 7.41e-06 ATGATCT AGCTTTAATTATAATGACTTGT TGGCATGAAC chr13:42046546-42047046 - 23 8.31e-06 TTCTATTCAC TTTATCACACTGTATAACAAAA GTCTGTCAGT chr1:214531625-214532125 + 12 9.31e-06 GACCCGTTCT TATGTTTCAGGTGGTATTTTGT ATGTAAACCA chr1:36253641-36254141 + 79 9.31e-06 aattttaaac tgtattcattaagaaacattat chr1:164599467-164599967 + 6 9.31e-06 TCTCA TTTCTTGCTCTGTTATATAATA TAAATGCTTA chr2:55839289-55839789 - 55 9.31e-06 CCAAAGTGTC AACATGAAAGACAATATTTTAA GGCAGCCTGA chr6:156933388-156933888 - 68 1.04e-05 TTCAATGCTA TTTGTCTAGGTTTTTATTTGAT AACAATAAGG chr10:87925750-87926250 + 26 1.04e-05 TCTCTAACTG TACATCACCTAAGTTATTTAAA ATTGCTGAAT chr16:53961231-53961731 + 36 1.04e-05 TTGCTGTCTA TGTTATTATTTCATATACTAAA TTGGAGAAAA chr7:112202188-112202688 - 34 1.04e-05 GCACTTTTGA AGTATACAATGCATTGTTATTT ATTGTATCTC chr14:67934173-67934673 + 78 1.04e-05 TGGCATTTGT TGCTTACCATTGTTTCATTTCT T chr4:56387370-56387870 + 37 1.16e-05 GTCTATAGGC TTTTTCACTTTTGGTTATCTGC TCAGGCGCTC chr15:55740460-55740960 - 70 1.16e-05 TTTTACAGT TGTGTGTTAAGGAATCATTTTA TGCCTGTAAT chr3:4680329-4680829 + 71 1.30e-05 GCCTCCTGTG TATATTTAAGCGAGAGTTTGAT GAAAGCAA chr5:163503188-163503688 - 42 1.30e-05 TCTAGAATGC TTCATTTCTTGAATTGCTAGTT CTTACCTGCT chrX:119785038-119785538 + 74 1.30e-05 tggccaataa tttgttaatgcatCTCTCTAAA TATGA chr19:49340434-49340934 - 62 1.45e-05 GCACAAGCAG TGTGTTGAACTTTCTAATCTCA TCCCTCTCCT chr6:28597402-28597902 - 18 1.45e-05 CTAGGCGTAC TGTTTTTATCTGTTCGTTTGAT ATGTGCCAAG chr4:152265430-152265930 - 61 1.79e-05 TCTGCAGAGA TTTGTTAATGCTGGTTTGTACA TTATCCAGGC chr2:74454455-74454955 + 32 1.79e-05 TCGgccattt tgtcatcaatatagtttatgta ttcctccacc chr20:11881534-11882034 + 58 1.98e-05 ttttcctgcg aatatgtcagtttcagtttagt tcacatgtcc chr1:58812159-58812659 - 77 1.98e-05 TC TGTGTTGTATCTGTTTAATAGT GTCCCACTAG chr14:36662039-36662539 + 66 2.20e-05 TGGGTGGCTG TTGATGCCATTTTCTGATTTTA AGAGAAGGGA chr3:52770935-52771435 + 47 2.20e-05 ACAAGTATTG ttcgttcattctgcaaatattt gttgaccgcc chr1:235105153-235105653 + 30 2.20e-05 CAAATGCAAC AGTCTGACAGGTTTTACTAATA CTAGCCCTCA chr4:23973429-23973929 + 8 2.44e-05 ATAGCCA AATTTCACACTCAATTTATTCT GCAGAGTAAC chr10:74150690-74151190 - 10 2.44e-05 ACGGTCTTCC TGCATATTTAAAATTTCTAATA CGGTAGACA chr13:50529485-50529985 - 65 2.70e-05 CAATCTCTGA TTTATTTCTGTCACTGGATATT CTGCATAGCT chr12:121801962-12180246 - 74 2.70e-05 ATGTC TTTGTCTCTCTTGTCTAATATA AGCCAGTTAA chr15:48855895-48856395 - 70 2.70e-05 TGATCCCCT TGCATCCCTTACAGTATTTGAA TTTTCGCCCA chr8:17538770-17539270 - 70 2.70e-05 TGATCCTGG ATTTTCACTTTAGTTCAAAAGT TTGAAGTTGC chr15:89090623-89091123 + 1 2.98e-05 . TTTTTAGATTaagattttatga gccactgtat chr5:72817873-72818373 + 23 2.98e-05 TGGCAGTACG ATTTTTACTTCATGCAATTTAA CGTGAGCCTA chr8:11676231-11676731 - 63 2.98e-05 CAAATTACAA TTTTTTCCAAGTACTGCTATAA CAGCATTTCT chr20:51934596-51935096 + 11 3.29e-05 CTAAGTGTTA ATTCTCACAAAGTTTTCATATT TGGGTCATAA chr18:6866721-6867221 + 77 3.29e-05 CTGGGTAATC TTTATTCCGTATTGTTACTTGT AG chr12:946503-947003 + 50 3.99e-05 aggaaggcag agtgtcaccttatttgaacata gctgggaaag chrX:73821810-73822310 + 11 4.39e-05 ATTTAGGCAG TGTATGTATGTGTCAGCATGTA AAAAGTAAAG chr7:69738492-69738992 + 2 4.39e-05 T TGCGTTATACATGCTTATTGGT TTGTGGCAGG chr10:61993680-61994180 + 10 4.39e-05 CATTGTGAG AACCTCACATATTGACATTATT TTGCTTAAAT chr22:43015449-43015949 - 26 4.82e-05 CCTGGTGCCT TGCCATCCAAATATATTTTATT AGAGAGAGCA chr10:121598560-12159906 - 15 4.82e-05 TTCGGTCATT TGTTTTCTAACTTGACATAAAA CAACGTAACG chr1:38013261-38013761 - 45 4.82e-05 CAACTGATTC TGCATATAAGCTTATTTCTACT CAACCTCCCT chr3:125512014-125512514 + 2 5.29e-05 A TGTATTAATAATACATTCTGGC CCACAGCCAA chr17:44523288-44523788 + 14 5.29e-05 CACCAGAAAC TGCTTCAAACTTACTGTACTCA AATCTCTCTT chr15:51103561-51104061 + 21 5.80e-05 TCCACATTCC TGTAACTCATACTTTAACTTCT CTTGATGAAA chr7:112131178-112131678 - 73 5.80e-05 CCATGG TTTATTGTATGAGAAAATAGTT GGTTTCCTCT chr18:45016668-45017168 + 72 6.36e-05 CTTTCACGGC TGCGTGGAAGTGTCATCTTTTA ATTTTTC chr15:69265617-69266117 - 21 6.36e-05 ATCAGATGGG ATTATTAACTATGACGTCTATT CTGGCCAAAC chr1:89719929-89720429 - 61 6.36e-05 AATCGCCAGA TGTCTCTAATCTATTGCATTCC CTAGCTCCTT chr1:184622419-184622919 - 7 6.96e-05 CTGACCCAGT TTTCTCATCTCTGGACTTTATA CCTTCT chr1:224875089-224875589 - 20 7.60e-05 TTTAATGAAT TATGAGCCATTACTTATTTATA ACTAATCTAC chr6:28953232-28953732 + 4 8.30e-05 TAA AATATTCTTATGAAACTTCTCA AAGCTCACCA chr14:50947411-50947911 + 44 8.30e-05 CACAATGGCC TATATTATTCCTGCTTCTCATC CACTGCTTCC chr7:133678177-133678677 - 11 9.05e-05 TGCTTTAAAT TATTTCTCTGTGACTGAACACA TAGTGCAATA chr5:133361141-133361641 + 15 9.05e-05 GATAATCCTT TATAGTTATTTACTATCTAATT GAGAAGCACC chr11:95917331-95917831 - 41 9.87e-05 TCCAGTCAAC AGTAGTCTATTAATAGTTAAGT CTGGGGAGTA chr10:113099522-11310002 - 48 9.87e-05 TGCGATGGCA AGTCTCCAAGTAATTACAAAGA CAGGAATTGG chr19:47598836-47599336 + 73 1.38e-04 CCTCCCACAT AGTTGGAATGTTAAATATCTCA GTGATG chr4:141652345-141652845 + 62 1.38e-04 AATCACGTGA TACATTTCATGTGAAGCTAAGT ATTTGGAACA chr14:50600152-50600652 + 45 1.49e-04 CTCCTAAACA TGTTTGGACTTGTAACTCTTAA CTACCTGAAA chr9:130710854-130711354 + 66 1.49e-04 tttccccatc tgtattatggggaatagtatta catgcctcac chr13:109778171-10977867 - 24 1.75e-04 CACACCGGCT TTCGTGAATGAAAGTCACATGA CTTGTTCTGT chr9:90801815-90802315 - 2 1.75e-04 GGAACCCACC TGTATTTTATTCACATGGTTTC A chr8:60619794-60620294 - 33 1.90e-04 AAGGAAACTT TACGTCACAGTAAATCTCAGAT TTATAGTGCT chr12:53595459-53595959 + 43 2.21e-04 caacaccata aacattattcctattatatgac aagataaGGA chr14:61332146-61332646 + 5 2.39e-04 GATT ATTATGTTAGTGTGCTTCTGTA GCACCAGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDTDTTWMWKTKWWTNWTTWTW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:125275431-125275931 1.6e-09 38_[+2]_40 chr7:82155665-82156165 5.8e-09 29_[-2]_49 chr12:120302421-12030292 1.3e-08 76_[+2]_2 chr22:38606556-38607056 2.3e-08 36_[+2]_42 chr6:31072796-31073296 5.8e-08 9_[-2]_69 chr1:236301725-236302225 6.9e-08 34_[-2]_44 chr1:218345904-218346404 8.2e-08 66_[+2]_12 chr12:42587708-42588208 1.4e-07 29_[+2]_49 chrX:41351053-41351553 1.9e-07 55_[+2]_23 chr10:133144025-13314452 2.2e-07 2_[+2]_76 chr12:124036578-12403707 2.6e-07 21_[+2]_57 chr5:10583935-10584435 3.5e-07 45_[+2]_33 chr1:8622059-8622559 3.5e-07 37_[-2]_41 chr16:4956305-4956805 4.1e-07 31_[-2]_47 chr2:175807171-175807671 4.1e-07 41_[+2]_37 chr2:199739945-199740445 4.7e-07 30_[+2]_48 chr10:15808382-15808882 7.3e-07 58_[+2]_20 chr1:245079166-245079666 8.4e-07 33_[+2]_45 chr1:58515980-58516480 8.4e-07 2_[-2]_76 chr10:136816-137316 9.7e-07 4_[+2]_74 chr8:26457977-26458477 9.7e-07 21_[+2]_57 chr1:51519453-51519953 9.7e-07 5_[-2]_73 chr6:43809848-43810348 1.1e-06 48_[+2]_30 chr1:169485142-169485642 1.1e-06 49_[-2]_29 chr8:37702754-37703254 1.1e-06 48_[+2]_30 chr1:211592070-211592570 1.1e-06 25_[+2]_53 chr17:14622761-14623261 1.1e-06 57_[-2]_21 chr6:127737078-127737578 1.5e-06 19_[+2]_59 chr3:197211642-197212142 1.7e-06 23_[-2]_55 chr1:116878410-116878910 1.7e-06 70_[-2]_8 chr6:106084818-106085318 1.7e-06 28_[-2]_50 chr1:224872952-224873452 1.9e-06 10_[-2]_68 chr19:41262392-41262892 2.2e-06 66_[+2]_12 chr10:113087695-11308819 2.5e-06 24_[+2]_54 chr1:16248864-16249364 2.8e-06 36_[-2]_42 chr2:174334933-174335433 2.8e-06 10_[+2]_68 chr10:74175661-74176161 3.2e-06 51_[+2]_27 chr13:97223459-97223959 3.2e-06 50_[-2]_28 chr6:10311230-10311730 3.6e-06 36_[+2]_42 chr3:125512236-125512736 3.6e-06 1_[-2]_77 chr15:89334910-89335410 3.6e-06 44_[+2]_34 chr19:999081-999581 4.1e-06 70_[-2]_8 chr6:111888843-111889343 5.2e-06 31_[+2]_47 chr1:33037111-33037611 5.2e-06 26_[+2]_52 chr7:149497971-149498471 5.2e-06 75_[+2]_3 chr6:83464733-83465233 5.2e-06 66_[-2]_12 chr3:159883432-159883932 5.2e-06 32_[+2]_46 chr18:34493180-34493680 5.9e-06 17_[-2]_61 chr1:81954732-81955232 5.9e-06 25_[-2]_53 chr6:28769830-28770330 5.9e-06 49_[+2]_29 chr3:169526444-169526944 6.6e-06 14_[+2]_64 chr15:60001181-60001681 6.6e-06 31_[+2]_47 chr6:85125189-85125689 6.6e-06 55_[+2]_23 chr5:76585867-76586367 7.4e-06 7_[+2]_71 chr13:42046546-42047046 8.3e-06 22_[-2]_56 chr1:214531625-214532125 9.3e-06 11_[+2]_67 chr1:36253641-36254141 9.3e-06 78_[+2] chr1:164599467-164599967 9.3e-06 5_[+2]_73 chr2:55839289-55839789 9.3e-06 54_[-2]_24 chr6:156933388-156933888 1e-05 67_[-2]_11 chr10:87925750-87926250 1e-05 25_[+2]_53 chr16:53961231-53961731 1e-05 35_[+2]_43 chr7:112202188-112202688 1e-05 33_[-2]_45 chr14:67934173-67934673 1e-05 77_[+2]_1 chr4:56387370-56387870 1.2e-05 36_[+2]_42 chr15:55740460-55740960 1.2e-05 69_[-2]_9 chr3:4680329-4680829 1.3e-05 70_[+2]_8 chr5:163503188-163503688 1.3e-05 41_[-2]_37 chrX:119785038-119785538 1.3e-05 73_[+2]_5 chr19:49340434-49340934 1.4e-05 61_[-2]_17 chr6:28597402-28597902 1.4e-05 17_[-2]_61 chr4:152265430-152265930 1.8e-05 60_[-2]_18 chr2:74454455-74454955 1.8e-05 31_[+2]_47 chr20:11881534-11882034 2e-05 57_[+2]_21 chr1:58812159-58812659 2e-05 76_[-2]_2 chr14:36662039-36662539 2.2e-05 65_[+2]_13 chr3:52770935-52771435 2.2e-05 46_[+2]_32 chr1:235105153-235105653 2.2e-05 29_[+2]_49 chr4:23973429-23973929 2.4e-05 7_[+2]_71 chr10:74150690-74151190 2.4e-05 9_[-2]_69 chr13:50529485-50529985 2.7e-05 64_[-2]_14 chr12:121801962-12180246 2.7e-05 73_[-2]_5 chr15:48855895-48856395 2.7e-05 69_[-2]_9 chr8:17538770-17539270 2.7e-05 69_[-2]_9 chr15:89090623-89091123 3e-05 [+2]_78 chr5:72817873-72818373 3e-05 22_[+2]_56 chr8:11676231-11676731 3e-05 62_[-2]_16 chr20:51934596-51935096 3.3e-05 10_[+2]_68 chr18:6866721-6867221 3.3e-05 76_[+2]_2 chr12:946503-947003 4e-05 49_[+2]_29 chrX:73821810-73822310 4.4e-05 10_[+2]_68 chr7:69738492-69738992 4.4e-05 1_[+2]_77 chr10:61993680-61994180 4.4e-05 9_[+2]_69 chr22:43015449-43015949 4.8e-05 25_[-2]_53 chr10:121598560-12159906 4.8e-05 14_[-2]_64 chr1:38013261-38013761 4.8e-05 44_[-2]_34 chr3:125512014-125512514 5.3e-05 1_[+2]_77 chr17:44523288-44523788 5.3e-05 13_[+2]_65 chr15:51103561-51104061 5.8e-05 20_[+2]_58 chr7:112131178-112131678 5.8e-05 72_[-2]_6 chr18:45016668-45017168 6.4e-05 71_[+2]_7 chr15:69265617-69266117 6.4e-05 20_[-2]_58 chr1:89719929-89720429 6.4e-05 60_[-2]_18 chr1:184622419-184622919 7e-05 6_[-2]_72 chr1:224875089-224875589 7.6e-05 19_[-2]_59 chr6:28953232-28953732 8.3e-05 3_[+2]_75 chr14:50947411-50947911 8.3e-05 43_[+2]_35 chr7:133678177-133678677 9.1e-05 10_[-2]_68 chr5:133361141-133361641 9.1e-05 14_[+2]_64 chr11:95917331-95917831 9.9e-05 40_[-2]_38 chr10:113099522-11310002 9.9e-05 47_[-2]_31 chr19:47598836-47599336 0.00014 72_[+2]_6 chr4:141652345-141652845 0.00014 61_[+2]_17 chr14:50600152-50600652 0.00015 44_[+2]_34 chr9:130710854-130711354 0.00015 65_[+2]_13 chr13:109778171-10977867 0.00018 23_[-2]_55 chr9:90801815-90802315 0.00018 1_[-2]_77 chr8:60619794-60620294 0.00019 32_[-2]_46 chr12:53595459-53595959 0.00022 42_[+2]_36 chr14:61332146-61332646 0.00024 4_[+2]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDTDTTWMWKTKWWTNWTTWTW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TDTDTTWMWKTKWWTNWTTWTW width=22 seqs=120 chr5:125275431-125275931 ( 39) TTTATTCCCTTTATTTTTTTTT 1 chr7:82155665-82156165 ( 30) TATATTTCTTAGTATTATTTTA 1 chr12:120302421-12030292 ( 77) TATGTCAAAGTTTTTTCTTTTT 1 chr22:38606556-38607056 ( 37) TGTCTTAAATTTATTTTCTTCT 1 chr6:31072796-31073296 ( 10) TTTGTTAATATAAGTTTTAATA 1 chr1:236301725-236302225 ( 35) TGTTTCCAATAGATTAATATTA 1 chr1:218345904-218346404 ( 67) TTCTTTAAATATATAAATTTCA 1 chr12:42587708-42588208 ( 30) TTTTTTTTTGTTTTTTTTTTCC 1 chrX:41351053-41351553 ( 56) TACATTAATGTGGTTTAATTTT 1 chr10:133144025-13314452 ( 3) AGTATTAAAGTCTTTGATCTTT 1 chr12:124036578-12403707 ( 22) TGTATGATTTAAAATTTTCATT 1 chr5:10583935-10584435 ( 46) ATTTTCAAAGTGATTTTTATGA 1 chr1:8622059-8622559 ( 38) AATTGTAAATATTTTTATTTTA 1 chr16:4956305-4956805 ( 32) TGCATTTATTCGTTTTATATAT 1 chr2:175807171-175807671 ( 42) TGTTTTTCAGGAAATCTTTATA 1 chr2:199739945-199740445 ( 31) TTTATGACTGTTAGTCATCTTT 1 chr10:15808382-15808882 ( 59) AGCATTAAATTCAGTTTCTTTA 1 chr1:245079166-245079666 ( 34) TGTTTTAACTTATTTTCGTATA 1 chr1:58515980-58516480 ( 3) TGTATGATTGTTTTTGATTGTC 1 chr10:136816-137316 ( 5) TACATTACATAGTGTTATATAT 1 chr8:26457977-26458477 ( 22) TTCATTCATTTGGTTGTTAAAT 1 chr1:51519453-51519953 ( 6) ATTATTATTTTCTATCATTATC 1 chr6:43809848-43810348 ( 49) TTTGTTAATCAAATTAAATTGT 1 chr1:169485142-169485642 ( 50) TGTGTTCATGATTTTCTGTTTT 1 chr8:37702754-37703254 ( 49) TGCATTAATGTGTTACATCATT 1 chr1:211592070-211592570 ( 26) AATATTCATTTGGTTTCTTTTC 1 chr17:14622761-14623261 ( 58) TGTGTCTAATTGTGTTTGTTTT 1 chr6:127737078-127737578 ( 20) TTTTTTCAAGTCATACATATAT 1 chr3:197211642-197212142 ( 24) TATATGTACCACATTTTTTTTA 1 chr1:116878410-116878910 ( 71) TGTATCCATTAAAGTAATAACA 1 chr6:106084818-106085318 ( 29) AATATGTCTGTTTATCTTTAAA 1 chr1:224872952-224873452 ( 11) TTTTTTACAGTTGCTGCTTTTC 1 chr19:41262392-41262892 ( 67) TGTGTTATCTTTATTATTCGAT 1 chr10:113087695-11308819 ( 25) TGTATAACTTTTTCCTTTATTT 1 chr1:16248864-16249364 ( 37) TGTTTTGTTTTGAAATTTAAAT 1 chr2:174334933-174335433 ( 11) TGTTTTAACCGGAGTAATTTTT 1 chr10:74175661-74176161 ( 52) TGCATTAAACTGTAAGATTAGA 1 chr13:97223459-97223959 ( 51) TTCCTCTTATTTAAAGATTATA 1 chr6:10311230-10311730 ( 37) TATGTTTAAAAGAAAATTTGTA 1 chr3:125512236-125512736 ( 2) TGTGTGCCTGTTTGTATTCTTT 1 chr15:89334910-89335410 ( 45) TATGATTAACTTTTAGTTTATT 1 chr19:999081-999581 ( 71) TTTGTTCATTTCCTTCTTATTT 1 chr6:111888843-111889343 ( 32) TGTATCCCTTTTGCTCATTTAC 1 chr1:33037111-33037611 ( 27) TGTAACAAAGTTGTTAATTGCA 1 chr7:149497971-149498471 ( 76) TGTTTGAAATGGAATAAATACT 1 chr6:83464733-83465233 ( 67) TTTATTACAGTTGTTGAGCAAA 1 chr3:159883432-159883932 ( 33) TATGTCATATAATTTCCTTTTC 1 chr18:34493180-34493680 ( 18) TTTCTTATTATTTAATAATGTT 1 chr1:81954732-81955232 ( 26) TTTATTTACTCTATTCCATTCA 1 chr6:28769830-28770330 ( 50) AGTGTAAATGTTAATAAGTTTA 1 chr3:169526444-169526944 ( 15) TATCTGTACCCTATTTTTTTTT 1 chr15:60001181-60001681 ( 32) AGTTTTAAATGTGTTTCTCACA 1 chr6:85125189-85125689 ( 56) ATTTTCTAAAACTTTATTTGTA 1 chr5:76585867-76586367 ( 8) AGCTTTAATTATAATGACTTGT 1 chr13:42046546-42047046 ( 23) TTTATCACACTGTATAACAAAA 1 chr1:214531625-214532125 ( 12) TATGTTTCAGGTGGTATTTTGT 1 chr1:36253641-36254141 ( 79) TGTATTCATTAAGAAACATTAT 1 chr1:164599467-164599967 ( 6) TTTCTTGCTCTGTTATATAATA 1 chr2:55839289-55839789 ( 55) AACATGAAAGACAATATTTTAA 1 chr6:156933388-156933888 ( 68) TTTGTCTAGGTTTTTATTTGAT 1 chr10:87925750-87926250 ( 26) TACATCACCTAAGTTATTTAAA 1 chr16:53961231-53961731 ( 36) TGTTATTATTTCATATACTAAA 1 chr7:112202188-112202688 ( 34) AGTATACAATGCATTGTTATTT 1 chr14:67934173-67934673 ( 78) TGCTTACCATTGTTTCATTTCT 1 chr4:56387370-56387870 ( 37) TTTTTCACTTTTGGTTATCTGC 1 chr15:55740460-55740960 ( 70) TGTGTGTTAAGGAATCATTTTA 1 chr3:4680329-4680829 ( 71) TATATTTAAGCGAGAGTTTGAT 1 chr5:163503188-163503688 ( 42) TTCATTTCTTGAATTGCTAGTT 1 chrX:119785038-119785538 ( 74) TTTGTTAATGCATCTCTCTAAA 1 chr19:49340434-49340934 ( 62) TGTGTTGAACTTTCTAATCTCA 1 chr6:28597402-28597902 ( 18) TGTTTTTATCTGTTCGTTTGAT 1 chr4:152265430-152265930 ( 61) TTTGTTAATGCTGGTTTGTACA 1 chr2:74454455-74454955 ( 32) TGTCATCAATATAGTTTATGTA 1 chr20:11881534-11882034 ( 58) AATATGTCAGTTTCAGTTTAGT 1 chr1:58812159-58812659 ( 77) TGTGTTGTATCTGTTTAATAGT 1 chr14:36662039-36662539 ( 66) TTGATGCCATTTTCTGATTTTA 1 chr3:52770935-52771435 ( 47) TTCGTTCATTCTGCAAATATTT 1 chr1:235105153-235105653 ( 30) AGTCTGACAGGTTTTACTAATA 1 chr4:23973429-23973929 ( 8) AATTTCACACTCAATTTATTCT 1 chr10:74150690-74151190 ( 10) TGCATATTTAAAATTTCTAATA 1 chr13:50529485-50529985 ( 65) TTTATTTCTGTCACTGGATATT 1 chr12:121801962-12180246 ( 74) TTTGTCTCTCTTGTCTAATATA 1 chr15:48855895-48856395 ( 70) TGCATCCCTTACAGTATTTGAA 1 chr8:17538770-17539270 ( 70) ATTTTCACTTTAGTTCAAAAGT 1 chr15:89090623-89091123 ( 1) TTTTTAGATTAAGATTTTATGA 1 chr5:72817873-72818373 ( 23) ATTTTTACTTCATGCAATTTAA 1 chr8:11676231-11676731 ( 63) TTTTTTCCAAGTACTGCTATAA 1 chr20:51934596-51935096 ( 11) ATTCTCACAAAGTTTTCATATT 1 chr18:6866721-6867221 ( 77) TTTATTCCGTATTGTTACTTGT 1 chr12:946503-947003 ( 50) AGTGTCACCTTATTTGAACATA 1 chrX:73821810-73822310 ( 11) TGTATGTATGTGTCAGCATGTA 1 chr7:69738492-69738992 ( 2) TGCGTTATACATGCTTATTGGT 1 chr10:61993680-61994180 ( 10) AACCTCACATATTGACATTATT 1 chr22:43015449-43015949 ( 26) TGCCATCCAAATATATTTTATT 1 chr10:121598560-12159906 ( 15) TGTTTTCTAACTTGACATAAAA 1 chr1:38013261-38013761 ( 45) TGCATATAAGCTTATTTCTACT 1 chr3:125512014-125512514 ( 2) TGTATTAATAATACATTCTGGC 1 chr17:44523288-44523788 ( 14) TGCTTCAAACTTACTGTACTCA 1 chr15:51103561-51104061 ( 21) TGTAACTCATACTTTAACTTCT 1 chr7:112131178-112131678 ( 73) TTTATTGTATGAGAAAATAGTT 1 chr18:45016668-45017168 ( 72) TGCGTGGAAGTGTCATCTTTTA 1 chr15:69265617-69266117 ( 21) ATTATTAACTATGACGTCTATT 1 chr1:89719929-89720429 ( 61) TGTCTCTAATCTATTGCATTCC 1 chr1:184622419-184622919 ( 7) TTTCTCATCTCTGGACTTTATA 1 chr1:224875089-224875589 ( 20) TATGAGCCATTACTTATTTATA 1 chr6:28953232-28953732 ( 4) AATATTCTTATGAAACTTCTCA 1 chr14:50947411-50947911 ( 44) TATATTATTCCTGCTTCTCATC 1 chr7:133678177-133678677 ( 11) TATTTCTCTGTGACTGAACACA 1 chr5:133361141-133361641 ( 15) TATAGTTATTTACTATCTAATT 1 chr11:95917331-95917831 ( 41) AGTAGTCTATTAATAGTTAAGT 1 chr10:113099522-11310002 ( 48) AGTCTCCAAGTAATTACAAAGA 1 chr19:47598836-47599336 ( 73) AGTTGGAATGTTAAATATCTCA 1 chr4:141652345-141652845 ( 62) TACATTTCATGTGAAGCTAAGT 1 chr14:50600152-50600652 ( 45) TGTTTGGACTTGTAACTCTTAA 1 chr9:130710854-130711354 ( 66) TGTATTATGGGGAATAGTATTA 1 chr13:109778171-10977867 ( 24) TTCGTGAATGAAAGTCACATGA 1 chr9:90801815-90802315 ( 2) TGTATTTTATTCACATGGTTTC 1 chr8:60619794-60620294 ( 33) TACGTCACAGTAAATCTCAGAT 1 chr12:53595459-53595959 ( 43) AACATTATTCCTATTATATGAC 1 chr14:61332146-61332646 ( 5) ATTATGTTAGTGTGCTTCTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDTDTTWMWKTKWWTNWTTWTW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.89882 E= 3.5e-043 12 -1355 -1355 184 7 -1355 65 60 -1355 -35 -510 184 99 -140 -35 17 -188 -1355 -310 208 -188 -29 -78 134 107 -46 -210 36 120 15 -1355 -16 112 -152 -351 93 -110 -110 7 112 22 -119 -140 127 -16 -119 -24 104 96 -351 -52 74 12 -93 -71 104 22 -251 -1355 171 17 -64 -46 78 90 -78 -351 93 -36 -119 -229 160 22 -110 -1355 153 78 -1355 -85 115 -4 -85 -101 120 107 -140 -1355 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDTDTTWMWKTKWWTNWTTWTW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 120 E= 3.5e-043 0.233333 0.000000 0.000000 0.766667 0.225000 0.000000 0.450000 0.325000 0.000000 0.225000 0.008333 0.766667 0.425000 0.108333 0.225000 0.241667 0.058333 0.000000 0.033333 0.908333 0.058333 0.233333 0.166667 0.541667 0.450000 0.208333 0.066667 0.275000 0.491667 0.316667 0.000000 0.191667 0.466667 0.100000 0.025000 0.408333 0.100000 0.133333 0.300000 0.466667 0.250000 0.125000 0.108333 0.516667 0.191667 0.125000 0.241667 0.441667 0.416667 0.025000 0.200000 0.358333 0.233333 0.150000 0.175000 0.441667 0.250000 0.050000 0.000000 0.700000 0.241667 0.183333 0.208333 0.366667 0.400000 0.166667 0.025000 0.408333 0.166667 0.125000 0.058333 0.650000 0.250000 0.133333 0.000000 0.616667 0.366667 0.000000 0.158333 0.475000 0.208333 0.158333 0.141667 0.491667 0.450000 0.108333 0.000000 0.441667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TDTDTTWMWKTKWWTNWTTWTW MEME-2 regular expression -------------------------------------------------------------------------------- [TA][GTA][TC][ATG]T[TC][ATC][AC][AT][TG][TA][TG][ATG][TA][TA][TAG][TA]T[TA][TA][TA][AT] -------------------------------------------------------------------------------- Time 695.24 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTWTWHWDGTKNAAAAVWDRA MEME-3 width = 22 sites = 28 llr = 376 E-value = 6.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTWTWHWDGTKNAAAAVWDRA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:2336544:2227aa936448 pos.-specific C 4:321:32::::41:::4:121 probability G :1:::::1271531:::31241 matrix T 59557433437321:::133:: bits 2.2 * 2.0 ** 1.8 * ** 1.6 * *** Relative 1.3 * * *** * Entropy 1.1 * ** *** * (19.4 bits) 0.9 * ** ** **** * * 0.7 ******* **** **** * * 0.4 ******* **** **** * ** 0.2 ************ **** **** 0.0 ---------------------- Multilevel TTTTTAAAAGTGCAAAACAAAA consensus C CAATTTTTATG ATTG sequence AC C G G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTWHWDGTKNAAAAVWDRA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr2:64797996-64798496 + 27 6.58e-13 GCCCACGCCA TTTTTAATAGTGCAAAAGAAAA TTCTGCTACC chr2:63049508-63050008 - 68 3.21e-09 CCTGGGTGGA CTTTTAAAAGTGCAAAAAAGAG TTTTCGTTCC chr8:11765605-11766105 - 14 4.36e-09 TAGGCCATAT CTTTTTTATGTGCAAAACGTGA GTGGGGGGAT chr1:58515980-58516480 - 77 4.36e-09 GT TTCTTAAGTTTGGAAAAGAAAA CTGATATTCT chrX:131729445-131729945 - 8 1.98e-08 GGCCTCGGTT TGATTTCAAGTGGAAAACAAAA TGAAAAA chr6:106084818-106085318 + 6 1.98e-08 AAAGT TTTCTAAAAGTGAGAAAAGAAA TTTTAAAGAT chr1:50968489-50968989 + 75 4.60e-08 AAGCGCTCAA TTTTTTTCTTTTCAAAAAAAGC TGAT chr9:12814436-12814936 + 71 4.60e-08 CAGATACAGC TTTCTACTTTATCAAAACAACA TCAATCAG chr10:61993680-61994180 + 35 5.15e-08 CATTATTTTG CTTAAATTGTTTCAAAACTAGA CATCAAGCTT chr20:18497155-18497655 - 50 5.15e-08 CATAGCCTGT CTTAAATAAGGGAAAAACATGA GAGCACTAGT chr7:82155665-82156165 - 73 1.50e-07 GTGTGA CTATTAAAAGTATCAAAGTGAA TACATTGACT chr15:55740460-55740960 + 22 2.95e-07 AAGCACCACA CTCCTATAAGGAAAAAAAAGGA GAACGGCACA chr21:36430170-36430670 + 55 3.24e-07 AACGTAGGGT TTTTATACTGTGCTAAATGAGA GAATGGGAAA chr12:110270652-11027115 - 25 3.24e-07 GGTGCTTAGA CTTTAAATGGTGAAATACTTAA AATGCAGAGA chr18:6866721-6867221 + 2 3.55e-07 C ATTTCTTTGTTGGAAAACTTAA GGAAAGGGAA chr1:51519453-51519953 - 63 4.25e-07 CAGTTCCTTC ATTCATACAATTCAAAAAATAA GAGTCTAGTA chr6:31072796-31073296 + 47 4.65e-07 caatagtgtc ataataatttatttaaaaagaA TTAAAggcca chr3:169526444-169526944 - 64 4.65e-07 CACTCACATA TTCATACAAGTTTAAACATTGA AAAGTTGATT chr4:105191829-105192329 - 59 6.03e-07 ATGTTATGAC TTCATTAAGGAGGAAAATTCCA TCTTAAAAAT chr7:112185151-112185651 + 79 9.90e-07 ctctgtctac cttataagagttaaaaggatca chr10:17227607-17228107 + 9 9.90e-07 CAATTGCA CGAATTCTTTTGGAAAACAGGA CCTATGGCAT chr1:236301725-236302225 + 5 1.07e-06 AAAT ATATATACTGAAGAAAAGAGCA TACGAATTTA chr2:219729078-219729578 - 29 1.07e-06 TGCTTCTGCT ATCTTTTATGAGCAAAAGGAGC AGAGGTTTTG chr5:181206813-181207313 - 77 1.58e-06 TT TTAAAACAGGAGGGAAAGACAA TGGGGCCCAG chr13:95677983-95678483 - 53 1.58e-06 CAACTAGCCC TTTTTATGGGGATGAAAATAGA TCAGTGCATG chr19:43968212-43968712 - 35 1.83e-06 CTTTCTACAT CTCTTACATGTACCAAACACAC ATACAAAGTG chr3:159883432-159883932 - 71 3.96e-06 AGACATAA TTCCTTATAGTGGTAATCACCA AGAATGTTAC chr16:48365927-48366427 + 17 5.13e-06 TTCCTCAGCA TTTCCACCAGTTTAAAAttagg tggaaccacg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTWHWDGTKNAAAAVWDRA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:64797996-64798496 6.6e-13 26_[+3]_52 chr2:63049508-63050008 3.2e-09 67_[-3]_11 chr8:11765605-11766105 4.4e-09 13_[-3]_65 chr1:58515980-58516480 4.4e-09 76_[-3]_2 chrX:131729445-131729945 2e-08 7_[-3]_71 chr6:106084818-106085318 2e-08 5_[+3]_73 chr1:50968489-50968989 4.6e-08 74_[+3]_4 chr9:12814436-12814936 4.6e-08 70_[+3]_8 chr10:61993680-61994180 5.2e-08 34_[+3]_44 chr20:18497155-18497655 5.2e-08 49_[-3]_29 chr7:82155665-82156165 1.5e-07 72_[-3]_6 chr15:55740460-55740960 3e-07 21_[+3]_57 chr21:36430170-36430670 3.2e-07 54_[+3]_24 chr12:110270652-11027115 3.2e-07 24_[-3]_54 chr18:6866721-6867221 3.6e-07 1_[+3]_77 chr1:51519453-51519953 4.3e-07 62_[-3]_16 chr6:31072796-31073296 4.6e-07 46_[+3]_32 chr3:169526444-169526944 4.6e-07 63_[-3]_15 chr4:105191829-105192329 6e-07 58_[-3]_20 chr7:112185151-112185651 9.9e-07 78_[+3] chr10:17227607-17228107 9.9e-07 8_[+3]_70 chr1:236301725-236302225 1.1e-06 4_[+3]_74 chr2:219729078-219729578 1.1e-06 28_[-3]_50 chr5:181206813-181207313 1.6e-06 76_[-3]_2 chr13:95677983-95678483 1.6e-06 52_[-3]_26 chr19:43968212-43968712 1.8e-06 34_[-3]_44 chr3:159883432-159883932 4e-06 70_[-3]_8 chr16:48365927-48366427 5.1e-06 16_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTWHWDGTKNAAAAVWDRA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTWTWHWDGTKNAAAAVWDRA width=22 seqs=28 chr2:64797996-64798496 ( 27) TTTTTAATAGTGCAAAAGAAAA 1 chr2:63049508-63050008 ( 68) CTTTTAAAAGTGCAAAAAAGAG 1 chr8:11765605-11766105 ( 14) CTTTTTTATGTGCAAAACGTGA 1 chr1:58515980-58516480 ( 77) TTCTTAAGTTTGGAAAAGAAAA 1 chrX:131729445-131729945 ( 8) TGATTTCAAGTGGAAAACAAAA 1 chr6:106084818-106085318 ( 6) TTTCTAAAAGTGAGAAAAGAAA 1 chr1:50968489-50968989 ( 75) TTTTTTTCTTTTCAAAAAAAGC 1 chr9:12814436-12814936 ( 71) TTTCTACTTTATCAAAACAACA 1 chr10:61993680-61994180 ( 35) CTTAAATTGTTTCAAAACTAGA 1 chr20:18497155-18497655 ( 50) CTTAAATAAGGGAAAAACATGA 1 chr7:82155665-82156165 ( 73) CTATTAAAAGTATCAAAGTGAA 1 chr15:55740460-55740960 ( 22) CTCCTATAAGGAAAAAAAAGGA 1 chr21:36430170-36430670 ( 55) TTTTATACTGTGCTAAATGAGA 1 chr12:110270652-11027115 ( 25) CTTTAAATGGTGAAATACTTAA 1 chr18:6866721-6867221 ( 2) ATTTCTTTGTTGGAAAACTTAA 1 chr1:51519453-51519953 ( 63) ATTCATACAATTCAAAAAATAA 1 chr6:31072796-31073296 ( 47) ATAATAATTTATTTAAAAAGAA 1 chr3:169526444-169526944 ( 64) TTCATACAAGTTTAAACATTGA 1 chr4:105191829-105192329 ( 59) TTCATTAAGGAGGAAAATTCCA 1 chr7:112185151-112185651 ( 79) CTTATAAGAGTTAAAAGGATCA 1 chr10:17227607-17228107 ( 9) CGAATTCTTTTGGAAAACAGGA 1 chr1:236301725-236302225 ( 5) ATATATACTGAAGAAAAGAGCA 1 chr2:219729078-219729578 ( 29) ATCTTTTATGAGCAAAAGGAGC 1 chr5:181206813-181207313 ( 77) TTAAAACAGGAGGGAAAGACAA 1 chr13:95677983-95678483 ( 53) TTTTTATGGGGATGAAAATAGA 1 chr19:43968212-43968712 ( 35) CTCTTACATGTACCAAACACAC 1 chr3:159883432-159883932 ( 71) TTCCTTATAGTGGTAATCACCA 1 chr16:48365927-48366427 ( 17) TTTCCACCAGTTTAAAATTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTWHWDGTKNAAAAVWDRA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.3948 E= 6.0e-008 -26 32 -1145 112 -1145 -1145 -200 212 0 -19 -1145 132 42 -42 -1145 122 22 -200 -1145 166 150 -1145 -1145 88 112 -19 -1145 42 100 -68 -142 42 100 -1145 -42 74 -258 -1145 132 22 0 -1145 -142 166 -26 -1145 91 42 -26 32 0 -26 174 -200 -142 -100 222 -1145 -1145 -1145 217 -1145 -1145 -258 206 -300 -300 -258 42 32 -19 -100 142 -1145 -100 42 88 -100 -42 22 100 -68 46 -1145 194 -142 -200 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTWHWDGTKNAAAAVWDRA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 28 E= 6.0e-008 0.178571 0.357143 0.000000 0.464286 0.000000 0.000000 0.071429 0.928571 0.214286 0.250000 0.000000 0.535714 0.285714 0.214286 0.000000 0.500000 0.250000 0.071429 0.000000 0.678571 0.607143 0.000000 0.000000 0.392857 0.464286 0.250000 0.000000 0.285714 0.428571 0.178571 0.107143 0.285714 0.428571 0.000000 0.214286 0.357143 0.035714 0.000000 0.714286 0.250000 0.214286 0.000000 0.107143 0.678571 0.178571 0.000000 0.535714 0.285714 0.178571 0.357143 0.285714 0.178571 0.714286 0.071429 0.107143 0.107143 1.000000 0.000000 0.000000 0.000000 0.964286 0.000000 0.000000 0.035714 0.892857 0.035714 0.035714 0.035714 0.285714 0.357143 0.250000 0.107143 0.571429 0.000000 0.142857 0.285714 0.392857 0.142857 0.214286 0.250000 0.428571 0.178571 0.392857 0.000000 0.821429 0.107143 0.071429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTWHWDGTKNAAAAVWDRA MEME-3 regular expression -------------------------------------------------------------------------------- [TC]T[TCA][TAC][TA][AT][ATC][AT][ATG][GT][TA][GT][CG]AAAA[CAG][AT][ATG][AG]A -------------------------------------------------------------------------------- Time 973.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGSGAGGAGGRRGAS MEME-4 width = 16 sites = 58 llr = 596 E-value = 4.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGSGAGGAGGRRGAS MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:1::71:7313535: pos.-specific C 13:3:3::1:11:224 probability G 7776a:8a27855626 matrix T 1:2:::1::1:2:::: bits 2.2 2.0 1.8 * * 1.6 * * Relative 1.3 ** * Entropy 1.1 ***** * * (14.8 bits) 0.9 * ***** * * 0.7 ********** * ** 0.4 *********** **** 0.2 **************** 0.0 ---------------- Multilevel GGGGGAGGAGGGAGAG consensus C C C A AGAGC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGAGGAGGRRGAS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr10:110567727-11056822 + 35 2.57e-09 CGGGGACTGT GGGGGAGGAGGGAGAC CCGGGTCCCG chr2:60557030-60557530 - 44 5.03e-08 AAGATAAAAA GGGGGAGGAGGGAAGG GGAGGGGTCG chr4:86594313-86594813 + 65 1.48e-07 AGCGTTTCCG AGGCgaggaggaggag gaggagATGC chr6:116681542-116682042 - 46 3.26e-07 CCTGCACGCA GGTGGAGGAGGGAGGC TGGCGGATGG chr7:128409882-128410382 + 69 3.26e-07 AGGGTACATC GGGGGATGAGGGGGAG AGGTGTCCCT chr2:189441230-189441730 + 65 3.75e-07 GCGCAAAGAT GGTGGAGGAGGAGAAC ATCCGCGTGG chr19:49340434-49340934 + 15 3.75e-07 AAACTTTGAG AGGGGAGGAAGGAAAC CGTCTAGCTC chr19:12757776-12758276 + 74 5.74e-07 CCAGCCCTAT TGGCGAGGAGGAGGAG AATCTGGCCT chr18:26863294-26863794 + 38 5.74e-07 GGATGCTTTT AGGGGAGGAAGGACAG CCTCTCCTCG chrX:40175797-40176297 + 5 5.74e-07 TGCG GGGGGCGGAGGGACAC CAAAGACAGG chr8:141000267-141000767 - 33 6.62e-07 AAGGGGAGAG GCAGGAGGAGGAAGAG GGAAATCGCA chr1:151790170-151790670 - 15 1.64e-06 GCAGCGGTAA AGGCGAGGATGGAGAC CGAAGGTTTG chr1:152111240-152111740 - 22 1.64e-06 AGCTGCTGAA GCGCGAGGAGGAGAGG CGCCAGCAGC chr13:30421558-30422058 + 83 1.85e-06 GAGAAGGGAC CGGGGAGGAGGTGGGG GA chr5:180292455-180292955 + 19 1.85e-06 CCAGAAGCCG GGTCGAAGAGGGGGAG GGGGTGCGAA chrX:119469047-119469547 + 24 1.85e-06 GGAGCGGAGT GGGGGCGGAGCGAGAC GGAAGCAGCT chr1:116372995-116373495 + 83 2.08e-06 CAGAGCAGCG GCGGGAGGAGGCGGAC AC chr19:48330165-48330665 - 46 2.08e-06 CCGCTGACCA GGGCGAGGGGGAAGGC CACCCAGGCC chr19:47698173-47698673 - 10 2.08e-06 GGGAAGGTGA GGTCGAGGAAGTGAAG TCACTCCTC chr1:212432828-212433328 + 83 2.33e-06 CCCGCTATGG CGGGGAGGAGGTAGGC GG chr4:54657637-54658137 + 4 2.62e-06 CGG GCGCGAGGGAGGGGAG GCGAGGAGGG chr19:11384134-11384634 + 66 2.94e-06 TAAGTGCCTG GCGGGAGGAGGCAGGG GCCCTTCCCG chr19:1244574-1245074 - 64 2.94e-06 CACCGGGCCA GGTGGAGGAACAAGAG CCGAGCACAC chr5:317278-317778 + 10 2.94e-06 GGGTTTGGG GGTGGAGGGGGTGGAC AGCTGACCAG chr4:152535829-152536329 + 64 4.07e-06 CTCCAGAGAG AGGGGCGGGAGGAGAG CGGCGCCTGC chr6:71288463-71288963 + 38 4.07e-06 CTCCCGCCTG TGGGGAGGAGAAGGAG CCGGATGGGC chr1:19210078-19210578 + 35 4.52e-06 CCTCCCAGGA GGGGGCGGAAGTGACG CAATCTGTCG chr10:22340675-22341175 + 19 5.03e-06 CGGCGGCCCG CGGCGCGGAGGGAGCG AAAGAGTCGG chr11:64230510-64231010 - 53 5.03e-06 TCAAGCACCC GGGGGCAGAGGGAAGG GGCCTGGCCC chr12:110270652-11027115 + 62 5.57e-06 GCACCTTGGG GGGTGAGGAAGGAGGG CAATGGAGGA chr19:48330365-48330865 - 5 9.12e-06 CTGGGTCCCT GGAGGCGGAAGGAAGG AAGA chr10:79129272-79129772 - 84 1.00e-05 G AGGGGAGGGAAGAGAG GAAGCCAGAG chr6:80004288-80004788 + 55 1.10e-05 CTAGCCTGAC GCAGGAGGAGGGGCGG CCCCCGTCGC chr6:136822695-136823195 + 25 1.10e-05 GTCCACGCCA GGGGGCAGAAGAGGCG CTGGTCGGCG chr12:56079325-56079825 + 46 1.10e-05 CGGCGCCGGG TCTGGAGGAGGAAGCG GCCAGAGACA chr8:17538770-17539270 + 21 1.32e-05 ACCTTTACTT AGGGGAGGAAGGGAAA GATTCATTTC chr17:78723387-78723887 + 62 1.44e-05 GGCCTCCCGG GGGGGAGGGGAGGCAC CACCAGCATT chr6:70956905-70957405 + 83 1.44e-05 TGCGAGAGGG AGGCGCGGAGGGACCC CT chr20:371988-372488 - 18 1.44e-05 CCTCTCAGCT GGAGGATGAGGGAGCC CCAGATCTGC chr20:37527740-37528240 - 40 1.44e-05 ACGGGAAATG GGGCGAGGATGAGCCC CCACTTCGGA chr17:57850078-57850578 + 75 1.44e-05 AAAGGTGGGG CCGCGCGGAGGAGAAG TAGTGGGGCA chr4:83034862-83035362 + 3 1.44e-05 CT GGGGGCGGAGCTAGCC CAGGCTCCCA chr1:27575318-27575818 - 71 1.57e-05 GCGCGCTGCG CGGGGATGATGGAGAG CTTCTGGAAT chrX:118346203-118346703 + 25 1.71e-05 CCCGGGTGGA GGTCGACGAGGAGGAG ACAAGAGTCA chr6:53794792-53795292 + 53 1.71e-05 gcaccggctg gcgggcgggggtacag ggacggggca chr12:114914385-11491488 - 20 1.71e-05 TTACCTCTCA GGAGGAGGGAGAAGCC CAGTGGTATC chr2:64797996-64798496 + 68 1.86e-05 CAGGCAAAAG AGGGGAAGAGAGAAAC TCCTGTTCAG chr13:112689789-11269028 + 57 2.39e-05 CCAGAGGGCG GCGGGCAGGGGAGGAG GAGACTCGGG chr6:57046447-57046947 + 15 2.80e-05 GGTCCCGGTA GCGCGAGGCGGTGCAG GGCGGGAAGG chr5:139404434-139404934 + 40 3.03e-05 ATGTGCCACC ACCCGAGGAGGAGGAC CCTGAAGAGA chr9:99819522-99820022 - 4 3.27e-05 GAAGTGAGCA GGGCGAGGCGCGGGCG ACA chr9:6681102-6681602 - 80 3.80e-05 AGGCG GGTGGAGGCGGTGACC GCGCGGAGGC chr1:87328479-87328979 + 85 4.09e-05 aagcgagcga gcgcgcgggagggagg chr7:74658042-74658542 - 10 4.09e-05 GCTCGAGACC CGGCGAGGCGGTGGGG GTGGGGGTA chr19:1651666-1652166 - 5 4.40e-05 GGGGTGGGGA GCGCGCGGGAGGGACG TCCT chr22:46080372-46080872 - 61 4.73e-05 TACCCGAGGT GCCGGAGGATGGAGGC GTCTTCTCCA chr15:51103561-51104061 - 1 5.82e-05 GTTACAGGAA TGTGGAGGATGAACCG chr8:66712569-66713069 - 19 5.82e-05 CCGGCGCGGC GGGCGCGGAGCCGAAC GCACTGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGAGGAGGRRGAS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:110567727-11056822 2.6e-09 34_[+4]_50 chr2:60557030-60557530 5e-08 43_[-4]_41 chr4:86594313-86594813 1.5e-07 64_[+4]_20 chr6:116681542-116682042 3.3e-07 45_[-4]_39 chr7:128409882-128410382 3.3e-07 68_[+4]_16 chr2:189441230-189441730 3.7e-07 64_[+4]_20 chr19:49340434-49340934 3.7e-07 14_[+4]_70 chr19:12757776-12758276 5.7e-07 73_[+4]_11 chr18:26863294-26863794 5.7e-07 37_[+4]_47 chrX:40175797-40176297 5.7e-07 4_[+4]_80 chr8:141000267-141000767 6.6e-07 32_[-4]_52 chr1:151790170-151790670 1.6e-06 14_[-4]_70 chr1:152111240-152111740 1.6e-06 21_[-4]_63 chr13:30421558-30422058 1.8e-06 82_[+4]_2 chr5:180292455-180292955 1.8e-06 18_[+4]_66 chrX:119469047-119469547 1.8e-06 23_[+4]_61 chr1:116372995-116373495 2.1e-06 82_[+4]_2 chr19:48330165-48330665 2.1e-06 45_[-4]_39 chr19:47698173-47698673 2.1e-06 9_[-4]_75 chr1:212432828-212433328 2.3e-06 82_[+4]_2 chr4:54657637-54658137 2.6e-06 3_[+4]_81 chr19:11384134-11384634 2.9e-06 65_[+4]_19 chr19:1244574-1245074 2.9e-06 63_[-4]_21 chr5:317278-317778 2.9e-06 9_[+4]_75 chr4:152535829-152536329 4.1e-06 63_[+4]_21 chr6:71288463-71288963 4.1e-06 37_[+4]_47 chr1:19210078-19210578 4.5e-06 34_[+4]_50 chr10:22340675-22341175 5e-06 18_[+4]_66 chr11:64230510-64231010 5e-06 52_[-4]_32 chr12:110270652-11027115 5.6e-06 61_[+4]_23 chr19:48330365-48330865 9.1e-06 4_[-4]_80 chr10:79129272-79129772 1e-05 83_[-4]_1 chr6:80004288-80004788 1.1e-05 54_[+4]_30 chr6:136822695-136823195 1.1e-05 24_[+4]_60 chr12:56079325-56079825 1.1e-05 45_[+4]_39 chr8:17538770-17539270 1.3e-05 20_[+4]_64 chr17:78723387-78723887 1.4e-05 61_[+4]_23 chr6:70956905-70957405 1.4e-05 82_[+4]_2 chr20:371988-372488 1.4e-05 17_[-4]_67 chr20:37527740-37528240 1.4e-05 39_[-4]_45 chr17:57850078-57850578 1.4e-05 74_[+4]_10 chr4:83034862-83035362 1.4e-05 2_[+4]_82 chr1:27575318-27575818 1.6e-05 70_[-4]_14 chrX:118346203-118346703 1.7e-05 24_[+4]_60 chr6:53794792-53795292 1.7e-05 52_[+4]_32 chr12:114914385-11491488 1.7e-05 19_[-4]_65 chr2:64797996-64798496 1.9e-05 67_[+4]_17 chr13:112689789-11269028 2.4e-05 56_[+4]_28 chr6:57046447-57046947 2.8e-05 14_[+4]_70 chr5:139404434-139404934 3e-05 39_[+4]_45 chr9:99819522-99820022 3.3e-05 3_[-4]_81 chr9:6681102-6681602 3.8e-05 79_[-4]_5 chr1:87328479-87328979 4.1e-05 84_[+4] chr7:74658042-74658542 4.1e-05 9_[-4]_75 chr19:1651666-1652166 4.4e-05 4_[-4]_80 chr22:46080372-46080872 4.7e-05 60_[-4]_24 chr15:51103561-51104061 5.8e-05 [-4]_84 chr8:66712569-66713069 5.8e-05 18_[-4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGAGGAGGRRGAS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGSGAGGAGGRRGAS width=16 seqs=58 chr10:110567727-11056822 ( 35) GGGGGAGGAGGGAGAC 1 chr2:60557030-60557530 ( 44) GGGGGAGGAGGGAAGG 1 chr4:86594313-86594813 ( 65) AGGCGAGGAGGAGGAG 1 chr6:116681542-116682042 ( 46) GGTGGAGGAGGGAGGC 1 chr7:128409882-128410382 ( 69) GGGGGATGAGGGGGAG 1 chr2:189441230-189441730 ( 65) GGTGGAGGAGGAGAAC 1 chr19:49340434-49340934 ( 15) AGGGGAGGAAGGAAAC 1 chr19:12757776-12758276 ( 74) TGGCGAGGAGGAGGAG 1 chr18:26863294-26863794 ( 38) AGGGGAGGAAGGACAG 1 chrX:40175797-40176297 ( 5) GGGGGCGGAGGGACAC 1 chr8:141000267-141000767 ( 33) GCAGGAGGAGGAAGAG 1 chr1:151790170-151790670 ( 15) AGGCGAGGATGGAGAC 1 chr1:152111240-152111740 ( 22) GCGCGAGGAGGAGAGG 1 chr13:30421558-30422058 ( 83) CGGGGAGGAGGTGGGG 1 chr5:180292455-180292955 ( 19) GGTCGAAGAGGGGGAG 1 chrX:119469047-119469547 ( 24) GGGGGCGGAGCGAGAC 1 chr1:116372995-116373495 ( 83) GCGGGAGGAGGCGGAC 1 chr19:48330165-48330665 ( 46) GGGCGAGGGGGAAGGC 1 chr19:47698173-47698673 ( 10) GGTCGAGGAAGTGAAG 1 chr1:212432828-212433328 ( 83) CGGGGAGGAGGTAGGC 1 chr4:54657637-54658137 ( 4) GCGCGAGGGAGGGGAG 1 chr19:11384134-11384634 ( 66) GCGGGAGGAGGCAGGG 1 chr19:1244574-1245074 ( 64) GGTGGAGGAACAAGAG 1 chr5:317278-317778 ( 10) GGTGGAGGGGGTGGAC 1 chr4:152535829-152536329 ( 64) AGGGGCGGGAGGAGAG 1 chr6:71288463-71288963 ( 38) TGGGGAGGAGAAGGAG 1 chr1:19210078-19210578 ( 35) GGGGGCGGAAGTGACG 1 chr10:22340675-22341175 ( 19) CGGCGCGGAGGGAGCG 1 chr11:64230510-64231010 ( 53) GGGGGCAGAGGGAAGG 1 chr12:110270652-11027115 ( 62) GGGTGAGGAAGGAGGG 1 chr19:48330365-48330865 ( 5) GGAGGCGGAAGGAAGG 1 chr10:79129272-79129772 ( 84) AGGGGAGGGAAGAGAG 1 chr6:80004288-80004788 ( 55) GCAGGAGGAGGGGCGG 1 chr6:136822695-136823195 ( 25) GGGGGCAGAAGAGGCG 1 chr12:56079325-56079825 ( 46) TCTGGAGGAGGAAGCG 1 chr8:17538770-17539270 ( 21) AGGGGAGGAAGGGAAA 1 chr17:78723387-78723887 ( 62) GGGGGAGGGGAGGCAC 1 chr6:70956905-70957405 ( 83) AGGCGCGGAGGGACCC 1 chr20:371988-372488 ( 18) GGAGGATGAGGGAGCC 1 chr20:37527740-37528240 ( 40) GGGCGAGGATGAGCCC 1 chr17:57850078-57850578 ( 75) CCGCGCGGAGGAGAAG 1 chr4:83034862-83035362 ( 3) GGGGGCGGAGCTAGCC 1 chr1:27575318-27575818 ( 71) CGGGGATGATGGAGAG 1 chrX:118346203-118346703 ( 25) GGTCGACGAGGAGGAG 1 chr6:53794792-53795292 ( 53) GCGGGCGGGGGTACAG 1 chr12:114914385-11491488 ( 20) GGAGGAGGGAGAAGCC 1 chr2:64797996-64798496 ( 68) AGGGGAAGAGAGAAAC 1 chr13:112689789-11269028 ( 57) GCGGGCAGGGGAGGAG 1 chr6:57046447-57046947 ( 15) GCGCGAGGCGGTGCAG 1 chr5:139404434-139404934 ( 40) ACCCGAGGAGGAGGAC 1 chr9:99819522-99820022 ( 4) GGGCGAGGCGCGGGCG 1 chr9:6681102-6681602 ( 80) GGTGGAGGCGGTGACC 1 chr1:87328479-87328979 ( 85) GCGCGCGGGAGGGAGG 1 chr7:74658042-74658542 ( 10) CGGCGAGGCGGTGGGG 1 chr19:1651666-1652166 ( 5) GCGCGCGGGAGGGACG 1 chr22:46080372-46080872 ( 61) GCCGGAGGATGGAGGC 1 chr15:51103561-51104061 ( 1) TGTGGAGGATGAACCG 1 chr8:66712569-66713069 ( 19) GGGCGCGGAGCCGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGAGGAGGRRGAS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.0287 E= 4.4e-006 -31 -147 120 -163 -1250 -14 137 -1250 -131 -305 131 -31 -1250 27 116 -363 -1250 -1250 181 -1250 176 -5 -1250 -1250 -131 -405 156 -205 -1250 -1250 181 -1250 179 -205 -59 -1250 27 -1250 120 -131 -163 -173 156 -1250 45 -247 76 -31 122 -1250 81 -1250 27 -88 104 -1250 132 -35 -24 -1250 -363 41 108 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGAGGAGGRRGAS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 58 E= 4.4e-006 0.172414 0.103448 0.655172 0.068966 0.000000 0.258621 0.741379 0.000000 0.086207 0.034483 0.706897 0.172414 0.000000 0.344828 0.637931 0.017241 0.000000 0.000000 1.000000 0.000000 0.724138 0.275862 0.000000 0.000000 0.086207 0.017241 0.844828 0.051724 0.000000 0.000000 1.000000 0.000000 0.741379 0.068966 0.189655 0.000000 0.258621 0.000000 0.655172 0.086207 0.068966 0.086207 0.844828 0.000000 0.293103 0.051724 0.482759 0.172414 0.500000 0.000000 0.500000 0.000000 0.258621 0.155172 0.586207 0.000000 0.534483 0.224138 0.241379 0.000000 0.017241 0.379310 0.603448 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSGAGGAGGRRGAS MEME-4 regular expression -------------------------------------------------------------------------------- G[GC]G[GC]G[AC]GGA[GA]G[GA][AG][GA][AGC][GC] -------------------------------------------------------------------------------- Time 1248.42 secs. ******************************************************************************** ******************************************************************************** MOTIF ARARDAAACAMA MEME-5 width = 12 sites = 42 llr = 433 E-value = 1.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARARDAAACAMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a78639892a58 pos.-specific C ::::1:2:7:4: probability G :3132::1::1: matrix T ::1:31::1::2 bits 2.2 * 2.0 * 1.8 * * 1.6 * * * * * Relative 1.3 * *** * * Entropy 1.1 *** *** * * (14.9 bits) 0.9 *** *** * * 0.7 **** ******* 0.4 **** ******* 0.2 ************ 0.0 ------------ Multilevel AAAAAAAACAAA consensus G GT A C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARDAAACAMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr20:11881534-11882034 - 40 2.47e-08 TATTCGCAGG AAAATAAACAAA GTTTATCCAT chr5:172437774-172438274 + 58 2.61e-07 CTCAATCGAG AAAGAAAACACA CCACACAGGC chr2:42141743-42142243 + 65 3.91e-07 TCCCAAGTCT AAAACAAACAAA GGCATGCATT chr2:165954041-165954541 + 13 4.58e-07 AAGGTGGCGC AGAAAAAAAAAA TCACACGTTC chr12:54010474-54010974 - 36 9.17e-07 TTTCCAAAAG AAAGGAAAAAAA GCTGGGGGTA chr6:14638946-14639446 + 34 1.07e-06 GGGTACTCGG AGAAGAAAAAAA ACCACCACCA chr10:17227607-17228107 + 87 1.27e-06 TTGCTGTCCT AAAATTAACACA TA chr6:10311230-10311730 - 71 1.56e-06 CGGGACATTA AAAAAACAAAAA GTGTACCTTG chr1:32651303-32651803 - 44 2.48e-06 CGGAGGCAGG AAGAGAAACAAA CACTGGCCGG chr5:72817873-72818373 - 70 2.75e-06 CTTTTAGGAA AAAGAAAACAGA ACACTAGTAC chr6:106084818-106085318 - 81 2.75e-06 ACAGGAAG AAATGAAACAAA GCAAAACAAA chr13:109778171-10977867 - 54 3.39e-06 CTAAGGTGCT AATGAAAACACA CACCGGCTTT chrX:40175797-40176297 - 61 3.39e-06 CGTGGGAGGG AAAGGACACAAA CTTGGCCATC chr15:44287903-44288403 - 86 3.39e-06 CGG AATAGAAAAAAA TAGTAGGTGA chr22:19855844-19856344 + 62 4.53e-06 agcctgggcc aaaaataataaa aGTGGCACCG chr3:4680329-4680829 - 20 4.98e-06 CCTCACATTC AAAATAAACTAA AGATTCAAGT chr15:40769708-40770208 + 41 5.60e-06 GAGTCAGCTG AGAACAAAAACA CATCTCCACC chrX:73821810-73822310 + 48 5.60e-06 TAAAGAACTG AAAATAGACAAA CCTTGTAAAT chr7:82155665-82156165 + 5 6.11e-06 GTTG AGGAAAAACACA GTCAAGTAGT chr12:12608841-12609341 - 61 6.11e-06 ACTGATTAGA AGAGCAAACACA GCAAAGTGTT chr1:235105153-235105653 - 6 7.56e-06 TGCATTTGAA AAACGAAACAAA AACGT chr10:22912346-22912846 + 12 7.56e-06 CCTCGGTACA AGAATACAAACA CTCTGAAATT chr5:179610812-179611312 + 81 8.18e-06 ctgacagctc agtataaaaaca tgcaggag chr15:69265617-69266117 + 62 8.18e-06 TGAGAATGAA AAAATAAGCACT CAAGATAGTC chr19:35265879-35266379 + 46 9.03e-06 GCACCCTCTG AAAAATCACACA GGAAGTGGGG chr3:169526444-169526944 - 2 9.03e-06 GTACAGATAC AAAAAAATAAAA C chr6:85125189-85125689 - 5 9.03e-06 ATTTCTAAGC AAAAAGAACACA CTCC chr14:63853349-63853849 - 3 9.77e-06 TGACGCGAGG AATGAAAACAAT CA chr6:156933388-156933888 - 44 1.07e-05 CAATAAGGTG AGAGTAAGCACA GGCAATCCAA chr3:123586313-123586813 - 84 1.07e-05 CTTCT AAAATACGCACA GAATTCATTG chr5:157142533-157143033 + 40 1.07e-05 GTCCGGAAGA AAAAAACGCACA CAGGCGGCGG chr13:39348359-39348859 - 9 1.17e-05 GAAATGTGCC AAGGAAAAAACA GTGGGGAA chr12:48716561-48717061 + 60 1.17e-05 TTGCCTCCGT AGAGGAAGCAAA AGTCAAAGGA chr5:76585867-76586367 + 70 1.27e-05 GAGGCTGTGT AAAGTAAACAGT TTTATATCCA chr8:60619794-60620294 - 88 1.27e-05 G AAAAGTAATACA GTAGCTTCAG chr10:133144025-13314452 + 38 1.40e-05 aaaagaacat agaagaaataat gacataagct chr2:137873897-137874397 - 19 1.52e-05 GCCTGAGACA AAGGCAAACAAA CCTACTAATA chr15:58749227-58749727 + 82 1.65e-05 GGAGAGGAGC AGAATTAACACT CTCAGCA chr14:76486413-76486913 + 50 1.81e-05 GAGTTGGTGC AGATAAAACAAT TTTCCTGGGG chr7:64562733-64563233 + 85 1.81e-05 CTCTAGGAGC AGAATACACAGA GCAG chr19:13150325-13150825 + 25 3.87e-05 AGGCACGGGC AATGTAAATAAT GATAGCCTCC chr2:201643327-201643827 - 58 4.75e-05 TTGGTCCTGG AGAGTAAACGCA TTCCTCCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARDAAACAMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:11881534-11882034 2.5e-08 39_[-5]_49 chr5:172437774-172438274 2.6e-07 57_[+5]_31 chr2:42141743-42142243 3.9e-07 64_[+5]_24 chr2:165954041-165954541 4.6e-07 12_[+5]_76 chr12:54010474-54010974 9.2e-07 35_[-5]_53 chr6:14638946-14639446 1.1e-06 33_[+5]_55 chr10:17227607-17228107 1.3e-06 86_[+5]_2 chr6:10311230-10311730 1.6e-06 70_[-5]_18 chr1:32651303-32651803 2.5e-06 43_[-5]_45 chr5:72817873-72818373 2.7e-06 69_[-5]_19 chr6:106084818-106085318 2.7e-06 80_[-5]_8 chr13:109778171-10977867 3.4e-06 53_[-5]_35 chrX:40175797-40176297 3.4e-06 60_[-5]_28 chr15:44287903-44288403 3.4e-06 85_[-5]_3 chr22:19855844-19856344 4.5e-06 61_[+5]_27 chr3:4680329-4680829 5e-06 19_[-5]_69 chr15:40769708-40770208 5.6e-06 40_[+5]_48 chrX:73821810-73822310 5.6e-06 47_[+5]_41 chr7:82155665-82156165 6.1e-06 4_[+5]_84 chr12:12608841-12609341 6.1e-06 60_[-5]_28 chr1:235105153-235105653 7.6e-06 5_[-5]_83 chr10:22912346-22912846 7.6e-06 11_[+5]_77 chr5:179610812-179611312 8.2e-06 80_[+5]_8 chr15:69265617-69266117 8.2e-06 61_[+5]_27 chr19:35265879-35266379 9e-06 45_[+5]_43 chr3:169526444-169526944 9e-06 1_[-5]_87 chr6:85125189-85125689 9e-06 4_[-5]_84 chr14:63853349-63853849 9.8e-06 2_[-5]_86 chr6:156933388-156933888 1.1e-05 43_[-5]_45 chr3:123586313-123586813 1.1e-05 83_[-5]_5 chr5:157142533-157143033 1.1e-05 39_[+5]_49 chr13:39348359-39348859 1.2e-05 8_[-5]_80 chr12:48716561-48717061 1.2e-05 59_[+5]_29 chr5:76585867-76586367 1.3e-05 69_[+5]_19 chr8:60619794-60620294 1.3e-05 87_[-5]_1 chr10:133144025-13314452 1.4e-05 37_[+5]_51 chr2:137873897-137874397 1.5e-05 18_[-5]_70 chr15:58749227-58749727 1.7e-05 81_[+5]_7 chr14:76486413-76486913 1.8e-05 49_[+5]_39 chr7:64562733-64563233 1.8e-05 84_[+5]_4 chr19:13150325-13150825 3.9e-05 24_[+5]_64 chr2:201643327-201643827 4.8e-05 57_[-5]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARDAAACAMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARARDAAACAMA width=12 seqs=42 chr20:11881534-11882034 ( 40) AAAATAAACAAA 1 chr5:172437774-172438274 ( 58) AAAGAAAACACA 1 chr2:42141743-42142243 ( 65) AAAACAAACAAA 1 chr2:165954041-165954541 ( 13) AGAAAAAAAAAA 1 chr12:54010474-54010974 ( 36) AAAGGAAAAAAA 1 chr6:14638946-14639446 ( 34) AGAAGAAAAAAA 1 chr10:17227607-17228107 ( 87) AAAATTAACACA 1 chr6:10311230-10311730 ( 71) AAAAAACAAAAA 1 chr1:32651303-32651803 ( 44) AAGAGAAACAAA 1 chr5:72817873-72818373 ( 70) AAAGAAAACAGA 1 chr6:106084818-106085318 ( 81) AAATGAAACAAA 1 chr13:109778171-10977867 ( 54) AATGAAAACACA 1 chrX:40175797-40176297 ( 61) AAAGGACACAAA 1 chr15:44287903-44288403 ( 86) AATAGAAAAAAA 1 chr22:19855844-19856344 ( 62) AAAAATAATAAA 1 chr3:4680329-4680829 ( 20) AAAATAAACTAA 1 chr15:40769708-40770208 ( 41) AGAACAAAAACA 1 chrX:73821810-73822310 ( 48) AAAATAGACAAA 1 chr7:82155665-82156165 ( 5) AGGAAAAACACA 1 chr12:12608841-12609341 ( 61) AGAGCAAACACA 1 chr1:235105153-235105653 ( 6) AAACGAAACAAA 1 chr10:22912346-22912846 ( 12) AGAATACAAACA 1 chr5:179610812-179611312 ( 81) AGTATAAAAACA 1 chr15:69265617-69266117 ( 62) AAAATAAGCACT 1 chr19:35265879-35266379 ( 46) AAAAATCACACA 1 chr3:169526444-169526944 ( 2) AAAAAAATAAAA 1 chr6:85125189-85125689 ( 5) AAAAAGAACACA 1 chr14:63853349-63853849 ( 3) AATGAAAACAAT 1 chr6:156933388-156933888 ( 44) AGAGTAAGCACA 1 chr3:123586313-123586813 ( 84) AAAATACGCACA 1 chr5:157142533-157143033 ( 40) AAAAAACGCACA 1 chr13:39348359-39348859 ( 9) AAGGAAAAAACA 1 chr12:48716561-48717061 ( 60) AGAGGAAGCAAA 1 chr5:76585867-76586367 ( 70) AAAGTAAACAGT 1 chr8:60619794-60620294 ( 88) AAAAGTAATACA 1 chr10:133144025-13314452 ( 38) AGAAGAAATAAT 1 chr2:137873897-137874397 ( 19) AAGGCAAACAAA 1 chr15:58749227-58749727 ( 82) AGAATTAACACT 1 chr14:76486413-76486913 ( 50) AGATAAAACAAT 1 chr7:64562733-64563233 ( 85) AGAATACACAGA 1 chr19:13150325-13150825 ( 25) AATGTAAATAAT 1 chr2:201643327-201643827 ( 58) AGAGTAAACGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARDAAACAMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.298 E= 1.4e-001 222 -1204 -1204 -1204 164 -1204 22 -1204 188 -1204 -159 -85 147 -358 22 -217 64 -159 -26 64 200 -1204 -358 -85 192 -78 -358 -1204 200 -1204 -126 -317 15 122 -1204 -117 215 -1204 -358 -317 122 58 -200 -1204 196 -1204 -1204 -36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARDAAACAMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 42 E= 1.4e-001 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.785714 0.000000 0.095238 0.119048 0.595238 0.023810 0.333333 0.047619 0.333333 0.095238 0.238095 0.333333 0.857143 0.000000 0.023810 0.119048 0.809524 0.166667 0.023810 0.000000 0.857143 0.000000 0.119048 0.023810 0.238095 0.666667 0.000000 0.095238 0.952381 0.000000 0.023810 0.023810 0.500000 0.428571 0.071429 0.000000 0.833333 0.000000 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARDAAACAMA MEME-5 regular expression -------------------------------------------------------------------------------- A[AG]A[AG][ATG]AAA[CA]A[AC]A -------------------------------------------------------------------------------- Time 1515.20 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCAGCAGCMGCTCCR MEME-6 width = 16 sites = 19 llr = 248 E-value = 8.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCAGCAGCMGCTCCR MEME-6 Description -------------------------------------------------------------------------------- Simplified A 91:61:9::6::11:4 pos.-specific C :3921a1:a41a2771 probability G :7129:19:16::334 matrix T 1::::::1::3:7:12 bits 2.2 2.0 * 1.8 * * * * 1.6 * * ** * * Relative 1.3 * * ***** * Entropy 1.1 * * ***** ** (18.9 bits) 0.9 * * ****** ** 0.7 *************** 0.4 *************** 0.2 **************** 0.0 ---------------- Multilevel AGCAGCAGCAGCTCCG consensus C C CT GGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCAGCMGCTCCR MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:218345904-218346404 - 8 8.22e-10 TGAGAGCAGG AGCAGCAGCAGCTCCG GAGCAGA chr9:22005998-22006498 + 6 8.22e-10 CGTGG AGCAGCAGCAGCTCCG CCACGCGGGC chr1:33342427-33342927 + 8 6.17e-08 CAAACTC AGCAGCAGCACCTGCA GGACCAGAGT chr1:46668361-46668861 + 37 1.06e-07 TCCCTCTGGG ACCAGCAGCCTCTGCG CGCCAAGTCC chr10:8332276-8332776 + 74 1.06e-07 TCATGAGGAG AGCGGCAGCATCTCGG TAGTGATGGG chr8:28701546-28702046 - 39 1.06e-07 GCCGCCGGGC AGCAGCAGCCTCCCCG GGGCACGGCG chr4:54657637-54658137 - 62 1.29e-07 GCGAGCGGCG AGCAGCAGCCCCTCCT CCCAGCGCCC chr6:119348644-119349144 + 82 1.99e-07 GGCGCTGAAT ACCAGCAGCAGCACGA ACT chr6:131135276-131135776 - 28 2.92e-07 CGGCGGCGGC AGCCGCAGCAGCCGCA GCACCCGCAT chr4:86594313-86594813 - 82 3.47e-07 AAG AGGAGCAGCATCTCCT CCTCCTCCTC chr5:43483628-43484128 + 14 5.44e-07 CTGAGTTCAA TCCAGCAGCAGCTCGA GCAGCGGCTC chrX:154486018-154486518 + 30 5.44e-07 CTTGCCCTTG AACAGCAGCCGCTGCT GGCGCACTGG chr20:47501699-47502199 - 20 8.30e-07 CCACCGACTA AGCCGCAGCCGCTGCC GTCGCTGTGG chr1:45584584-45585084 - 5 1.45e-06 CTCCTGCTGG AGCCGCAGCGGCCCCA AACA chr12:119989896-11999039 - 62 1.79e-06 CTGTCGGATC ACCGACAGCAGCTCGG GGTCCTGGGA chr17:48908191-48908691 + 54 1.92e-06 AGCGGGCGGG AGCAGCGGCCGCTCTG GTCGGCGGAC chr19:48330165-48330665 + 67 2.07e-06 CGCCCTGGTC AGCGGCATCATCTACA TCCACCTACG chr3:196942435-196942935 - 83 2.23e-06 GC AGCCGCCGCAGCACCA TCTTCTCCAA chr10:69630244-69630744 + 79 4.32e-06 ACTGCGCGCG ACCACCATCCGCTCGG CCTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCAGCMGCTCCR MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:218345904-218346404 8.2e-10 7_[-6]_77 chr9:22005998-22006498 8.2e-10 5_[+6]_79 chr1:33342427-33342927 6.2e-08 7_[+6]_77 chr1:46668361-46668861 1.1e-07 36_[+6]_48 chr10:8332276-8332776 1.1e-07 73_[+6]_11 chr8:28701546-28702046 1.1e-07 38_[-6]_46 chr4:54657637-54658137 1.3e-07 61_[-6]_23 chr6:119348644-119349144 2e-07 81_[+6]_3 chr6:131135276-131135776 2.9e-07 27_[-6]_57 chr4:86594313-86594813 3.5e-07 81_[-6]_3 chr5:43483628-43484128 5.4e-07 13_[+6]_71 chrX:154486018-154486518 5.4e-07 29_[+6]_55 chr20:47501699-47502199 8.3e-07 19_[-6]_65 chr1:45584584-45585084 1.4e-06 4_[-6]_80 chr12:119989896-11999039 1.8e-06 61_[-6]_23 chr17:48908191-48908691 1.9e-06 53_[+6]_31 chr19:48330165-48330665 2.1e-06 66_[+6]_18 chr3:196942435-196942935 2.2e-06 82_[-6]_2 chr10:69630244-69630744 4.3e-06 78_[+6]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCAGCMGCTCCR MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCAGCAGCMGCTCCR width=16 seqs=19 chr1:218345904-218346404 ( 8) AGCAGCAGCAGCTCCG 1 chr9:22005998-22006498 ( 6) AGCAGCAGCAGCTCCG 1 chr1:33342427-33342927 ( 8) AGCAGCAGCACCTGCA 1 chr1:46668361-46668861 ( 37) ACCAGCAGCCTCTGCG 1 chr10:8332276-8332776 ( 74) AGCGGCAGCATCTCGG 1 chr8:28701546-28702046 ( 39) AGCAGCAGCCTCCCCG 1 chr4:54657637-54658137 ( 62) AGCAGCAGCCCCTCCT 1 chr6:119348644-119349144 ( 82) ACCAGCAGCAGCACGA 1 chr6:131135276-131135776 ( 28) AGCCGCAGCAGCCGCA 1 chr4:86594313-86594813 ( 82) AGGAGCAGCATCTCCT 1 chr5:43483628-43484128 ( 14) TCCAGCAGCAGCTCGA 1 chrX:154486018-154486518 ( 30) AACAGCAGCCGCTGCT 1 chr20:47501699-47502199 ( 20) AGCCGCAGCCGCTGCC 1 chr1:45584584-45585084 ( 5) AGCCGCAGCGGCCCCA 1 chr12:119989896-11999039 ( 62) ACCGACAGCAGCTCGG 1 chr17:48908191-48908691 ( 54) AGCAGCGGCCGCTCTG 1 chr19:48330165-48330665 ( 67) AGCGGCATCATCTACA 1 chr3:196942435-196942935 ( 83) AGCCGCCGCAGCACCA 1 chr10:69630244-69630744 ( 79) ACCACCATCCGCTCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCAGCMGCTCCR MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.2874 E= 8.3e+001 215 -1089 -1089 -202 -202 -12 126 -1089 -1089 173 -244 -1089 156 -44 -86 -1089 -202 -244 165 -1089 -1089 181 -1089 -1089 206 -244 -244 -1089 -1089 -1089 165 -102 -1089 181 -1089 -1089 143 37 -244 -1089 -1089 -144 114 30 -1089 181 -1089 -1089 -102 -86 -1089 178 -202 126 -12 -1089 -1089 126 -12 -202 78 -244 56 -44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCAGCMGCTCCR MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 19 E= 8.3e+001 0.947368 0.000000 0.000000 0.052632 0.052632 0.263158 0.684211 0.000000 0.000000 0.947368 0.052632 0.000000 0.631579 0.210526 0.157895 0.000000 0.052632 0.052632 0.894737 0.000000 0.000000 1.000000 0.000000 0.000000 0.894737 0.052632 0.052632 0.000000 0.000000 0.000000 0.894737 0.105263 0.000000 1.000000 0.000000 0.000000 0.578947 0.368421 0.052632 0.000000 0.000000 0.105263 0.631579 0.263158 0.000000 1.000000 0.000000 0.000000 0.105263 0.157895 0.000000 0.736842 0.052632 0.684211 0.263158 0.000000 0.000000 0.684211 0.263158 0.052632 0.368421 0.052632 0.421053 0.157895 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCAGCMGCTCCR MEME-6 regular expression -------------------------------------------------------------------------------- A[GC]C[AC]GCAGC[AC][GT]CT[CG][CG][GA] -------------------------------------------------------------------------------- Time 1780.15 secs. ******************************************************************************** ******************************************************************************** MOTIF AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 width = 45 sites = 6 llr = 198 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 Description -------------------------------------------------------------------------------- Simplified A 782532:8::727:2:223::3:7:2:3a2:372::3:::a2::a pos.-specific C 2:3:2::::3:2:::872282:5:2:57:2:7:72:3235:::8: probability G :::3355:::233:8:2252:7:3:7:::77:3227:22::77:: matrix T 22522352a723:a:2:5::8:5:825:::3:::733755:232: bits 2.2 * * * * * 2.0 * * * * * 1.8 * * * * * 1.6 * ** * * * * * * Relative 1.3 * ** *** * * * * ** Entropy 1.1 * **** **** ****** *** *** * ** *** (47.6 bits) 0.9 ** ***** **** ****** *** *** ** * ** *** 0.7 **** ***** ***** ***************** * ****** 0.4 **** ****** ***** *************************** 0.2 **** ****** ********************************* 0.0 --------------------------------------------- Multilevel AATAAGGATTAGATGCCTGCTGCATGCCAGGCACTGATTCAGGCA consensus CGGTT C TG A ATG TA TAG TC CT T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------------------------- chr8:26457977-26458477 + 49 3.45e-20 TAAattcaca catgtgtattagatgcctgctatatgtcaggcactgctgtaggca atgagAG chr6:111541545-111542045 + 45 1.97e-17 cttaaccaac aaatattattggatgcctaccacgtgccaggcactgttccaggca ctggagacat chr16:22219992-22220492 + 31 3.14e-16 ttagctctgg aatgcatatcaagtgcctgctgtgtacaaggcgctgtgccaggca gggtcacagc chr15:89090623-89091123 + 50 8.33e-15 ttttcggaag ttcagggatcatgtgtcaactgcattTAAGGAAGTTACTTAGTCA TTCGAA chr12:114914385-11491488 - 43 1.22e-14 CATCATCTTG AACAGGGATTTTATGCACCCTGTACGCCAATCACCTCTTCAATTA CCTCTCAGGA chr12:120302421-12030292 + 14 2.08e-14 CCAAACATAA AATAATGTTTACATACGGGGTGCATGTCACTAGAGGATTTATGCA TTGCATTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:26457977-26458477 3.4e-20 48_[+7]_7 chr6:111541545-111542045 2e-17 44_[+7]_11 chr16:22219992-22220492 3.1e-16 30_[+7]_25 chr15:89090623-89091123 8.3e-15 49_[+7]_6 chr12:114914385-11491488 1.2e-14 42_[-7]_13 chr12:120302421-12030292 2.1e-14 13_[+7]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA width=45 seqs=6 chr8:26457977-26458477 ( 49) CATGTGTATTAGATGCCTGCTATATGTCAGGCACTGCTGTAGGCA 1 chr6:111541545-111542045 ( 45) AAATATTATTGGATGCCTACCACGTGCCAGGCACTGTTCCAGGCA 1 chr16:22219992-22220492 ( 31) AATGCATATCAAGTGCCTGCTGTGTACAAGGCGCTGTGCCAGGCA 1 chr15:89090623-89091123 ( 50) TTCAGGGATCATGTGTCAACTGCATTTAAGGAAGTTACTTAGTCA 1 chr12:114914385-11491488 ( 43) AACAGGGATTTTATGCACCCTGTACGCCAATCACCTCTTCAATTA 1 chr12:120302421-12030292 ( 14) AATAATGTTTACATACGGGGTGCATGTCACTAGAGGATTTATGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 45 n= 33600 bayes= 12.8985 E= 3.3e+003 164 -78 -923 -36 196 -923 -923 -36 -36 22 -923 122 122 -923 22 -36 64 -78 22 -36 -36 -923 81 64 -923 -923 81 122 196 -923 -923 -36 -923 -923 -923 222 -923 22 -923 164 164 -923 -78 -36 -36 -78 22 64 164 -923 22 -923 -923 -923 -923 222 -36 -923 154 -923 -923 154 -923 -36 -36 122 -78 -923 -36 -78 -78 122 64 -78 81 -923 -923 154 -78 -923 -923 -78 -923 196 64 -923 122 -923 -923 81 -923 122 164 -923 22 -923 -923 -78 -923 196 -36 -923 122 -36 -923 81 -923 122 64 122 -923 -923 222 -923 -923 -923 -36 -78 122 -923 -923 -923 122 64 64 122 -923 -923 164 -923 22 -923 -36 122 -78 -923 -923 -78 -78 164 -923 -923 122 64 64 22 -923 64 -923 -78 -78 164 -923 22 -78 122 -923 81 -923 122 222 -923 -923 -923 -36 -923 122 -36 -923 -923 122 64 -923 154 -923 -36 222 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 45 nsites= 6 E= 3.3e+003 0.666667 0.166667 0.000000 0.166667 0.833333 0.000000 0.000000 0.166667 0.166667 0.333333 0.000000 0.500000 0.500000 0.000000 0.333333 0.166667 0.333333 0.166667 0.333333 0.166667 0.166667 0.000000 0.500000 0.333333 0.000000 0.000000 0.500000 0.500000 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.666667 0.000000 0.166667 0.166667 0.166667 0.166667 0.333333 0.333333 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.833333 0.000000 0.166667 0.166667 0.666667 0.166667 0.000000 0.166667 0.166667 0.166667 0.500000 0.333333 0.166667 0.500000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.166667 0.000000 0.833333 0.333333 0.000000 0.666667 0.000000 0.000000 0.500000 0.000000 0.500000 0.666667 0.000000 0.333333 0.000000 0.000000 0.166667 0.000000 0.833333 0.166667 0.000000 0.666667 0.166667 0.000000 0.500000 0.000000 0.500000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.000000 0.000000 0.666667 0.333333 0.333333 0.666667 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.166667 0.666667 0.166667 0.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.000000 0.666667 0.333333 0.333333 0.333333 0.000000 0.333333 0.000000 0.166667 0.166667 0.666667 0.000000 0.333333 0.166667 0.500000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.666667 0.166667 0.000000 0.000000 0.666667 0.333333 0.000000 0.833333 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAYRNKKATYANRTGCCTRCTRYRTGYMAGKMRCTKHTYYAGKCA MEME-7 regular expression -------------------------------------------------------------------------------- AA[TC][AG][AG][GT][GT]AT[TC]A[GT][AG]TGCCT[GA]CT[GA][CT][AG]TG[CT][CA]AG[GT][CA][AG]CT[GT][ACT]T[TC][CT]AG[GT]CA -------------------------------------------------------------------------------- Time 2042.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 width = 30 sites = 12 llr = 236 E-value = 5.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 Description -------------------------------------------------------------------------------- Simplified A 2::::3353::::32::1::3182233289 pos.-specific C 229362211963a332:14618::8:141: probability G ::::22445:11:25:113::1:3::6:11 matrix T 7817342:2137:2:898347136:7:4:: bits 2.2 2.0 1.8 * * * 1.6 * * ** * Relative 1.3 ** * * ** * ** ** Entropy 1.1 *** * * ** * ** ** (28.3 bits) 0.9 **** * ** *** ** * ** ** 0.7 **** * **** *** *********** 0.4 ***** * **** **************** 0.2 ****** ****** **************** 0.0 ------------------------------ Multilevel TTCTCTGAGCCTCAGTTTCCTCATCTGCAA consensus CTAAGA TC CC GTA TG AAT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr8:22561335-22561835 + 68 6.44e-16 TGGCCGGGat ttctctgggcctccctttcctcatctataa gat chr7:2400196-2400696 + 56 2.62e-11 gttggttacc ttctctggtcccctgcttccttatctgtaa accaggagat chr1:46246606-46247106 - 60 6.11e-11 ATCATCCAAT CTCTCAAAACGTCAGTTTCTTCATATCTAA AGTGGCATTA chr5:176535999-176536499 + 71 1.97e-10 atccctttgc ttctgagcgcctcagttggcacagctataa chr15:74262746-74263246 - 3 3.73e-10 GCCAGTTAAA TTCCCTGAACCTCGATGTTCTCTTAAGCAA TG chr6:93417577-93418077 - 70 4.08e-10 G ACCTTCTGACCCCACTTTCCACATCTGCAA CCTGTATAGA chr1:25338516-25339016 - 23 1.80e-09 TCACGCTCCT TTCTCGGGGCTTCGGCTTGTCCAGCTGTGA AGTGGGGGAT chr12:122946841-12294734 + 68 1.80e-09 AAACAGAGCC TTCCTGAGGCCTCCCTTAGCTGAACTAAAA GGC chr12:1796153-1796653 - 60 1.94e-09 GTGACTTCGC CTCCTCTAGTCTCCATTCTCTCATCTGCAA AATGGGCACA chr5:80645067-80645567 + 2 3.04e-09 a acctctaaccttccctttgttcttcagaca tatggaaggt chr5:133361141-133361641 + 49 3.51e-09 GAAGCACCCT TTCTGTCATCTGCAGTTTCTTCTACAACAG CAGCAGGCCC chr2:85768734-85769234 + 68 3.78e-09 CTGGGCCACT TTTCCACAGCTCCTGTTTTTAAAGCAGCAA CTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:22561335-22561835 6.4e-16 67_[+8]_3 chr7:2400196-2400696 2.6e-11 55_[+8]_15 chr1:46246606-46247106 6.1e-11 59_[-8]_11 chr5:176535999-176536499 2e-10 70_[+8] chr15:74262746-74263246 3.7e-10 2_[-8]_68 chr6:93417577-93418077 4.1e-10 69_[-8]_1 chr1:25338516-25339016 1.8e-09 22_[-8]_48 chr12:122946841-12294734 1.8e-09 67_[+8]_3 chr12:1796153-1796653 1.9e-09 59_[-8]_11 chr5:80645067-80645567 3e-09 1_[+8]_69 chr5:133361141-133361641 3.5e-09 48_[+8]_22 chr2:85768734-85769234 3.8e-09 67_[+8]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCYCWRRRCYTCNSTTTBYTCATCWRYAA width=30 seqs=12 chr8:22561335-22561835 ( 68) TTCTCTGGGCCTCCCTTTCCTCATCTATAA 1 chr7:2400196-2400696 ( 56) TTCTCTGGTCCCCTGCTTCCTTATCTGTAA 1 chr1:46246606-46247106 ( 60) CTCTCAAAACGTCAGTTTCTTCATATCTAA 1 chr5:176535999-176536499 ( 71) TTCTGAGCGCCTCAGTTGGCACAGCTATAA 1 chr15:74262746-74263246 ( 3) TTCCCTGAACCTCGATGTTCTCTTAAGCAA 1 chr6:93417577-93418077 ( 70) ACCTTCTGACCCCACTTTCCACATCTGCAA 1 chr1:25338516-25339016 ( 23) TTCTCGGGGCTTCGGCTTGTCCAGCTGTGA 1 chr12:122946841-12294734 ( 68) TTCCTGAGGCCTCCCTTAGCTGAACTAAAA 1 chr12:1796153-1796653 ( 60) CTCCTCTAGTCTCCATTCTCTCATCTGCAA 1 chr5:80645067-80645567 ( 2) ACCTCTAACCTTCCCTTTGTTCTTCAGACA 1 chr5:133361141-133361641 ( 49) TTCTGTCATCTGCAGTTTCTTCTACAACAG 1 chr2:85768734-85769234 ( 68) TTTCCACAGCTCCTGTTTTTAAAGCAGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.2408 E= 5.4e-001 -36 -78 -1023 164 -1023 -78 -1023 196 -1023 168 -1023 -136 -1023 22 -1023 164 -1023 103 -78 22 22 -78 -78 96 22 -78 54 -36 122 -178 54 -1023 22 -178 81 -36 -1023 168 -1023 -136 -1023 103 -178 64 -1023 -19 -178 164 -1023 181 -1023 -1023 64 22 -78 -36 -36 22 81 -1023 -1023 -78 -1023 196 -1023 -1023 -178 210 -136 -178 -178 181 -1023 54 22 22 -1023 103 -1023 96 22 -178 -1023 164 -136 139 -178 -136 181 -1023 -1023 22 -36 -1023 -19 145 -36 154 -1023 -1023 64 -1023 -1023 164 64 -178 103 -1023 -36 54 -1023 96 196 -178 -178 -1023 210 -1023 -178 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 12 E= 5.4e-001 0.166667 0.166667 0.000000 0.666667 0.000000 0.166667 0.000000 0.833333 0.000000 0.916667 0.000000 0.083333 0.000000 0.333333 0.000000 0.666667 0.000000 0.583333 0.166667 0.250000 0.250000 0.166667 0.166667 0.416667 0.250000 0.166667 0.416667 0.166667 0.500000 0.083333 0.416667 0.000000 0.250000 0.083333 0.500000 0.166667 0.000000 0.916667 0.000000 0.083333 0.000000 0.583333 0.083333 0.333333 0.000000 0.250000 0.083333 0.666667 0.000000 1.000000 0.000000 0.000000 0.333333 0.333333 0.166667 0.166667 0.166667 0.333333 0.500000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.083333 0.916667 0.083333 0.083333 0.083333 0.750000 0.000000 0.416667 0.333333 0.250000 0.000000 0.583333 0.000000 0.416667 0.250000 0.083333 0.000000 0.666667 0.083333 0.750000 0.083333 0.083333 0.750000 0.000000 0.000000 0.250000 0.166667 0.000000 0.250000 0.583333 0.166667 0.833333 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.333333 0.083333 0.583333 0.000000 0.166667 0.416667 0.000000 0.416667 0.833333 0.083333 0.083333 0.000000 0.916667 0.000000 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCYCWRRRCYTCNSTTTBYTCATCWRYAA MEME-8 regular expression -------------------------------------------------------------------------------- TTC[TC][CT][TA][GA][AG][GA]C[CT][TC]C[AC][GC]TTT[CGT][CT][TA]C[AT][TG]C[TA][GA][CT]AA -------------------------------------------------------------------------------- Time 2302.57 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 width = 50 sites = 6 llr = 211 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 Description -------------------------------------------------------------------------------- Simplified A 8:55:::25a:3:2a:3:::23:58:725:32a372:::33::::2537: pos.-specific C ::22:5:52:3:75::782:223::522::3::::5787:22353:32:2 probability G 2a32a2223:73:3:8:::a733:::2:58:7:533:::2:5::::2:38 matrix T :::2:382:::33::2:28::23525:7:232:2::3235537578:5:: bits 2.2 * * * 2.0 * * * 1.8 * * * * * * 1.6 ** * * * * ** * * * Relative 1.3 ** * * * ** *** ** * * * * Entropy 1.1 ** * * * * ****** *** ** * * *** **** ** (50.8 bits) 0.9 ** * * ** * ****** ******* * * *** **** ** 0.7 ** * * ** * ******* ******* ** * ***** **** *** 0.4 *** *** ************* **************************** 0.2 ********************* **************************** 0.0 -------------------------------------------------- Multilevel AGAAGCTCAAGACCAGCCTGGACAACATAGAGAGACCCCTTGTCTTATAG consensus G T G CGTG A GGT T G C AGGT TAATCTC CAG sequence T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chr19:2385398-2385898 + 44 8.64e-21 acttgaggcc aggagttcaaggccagactggacaacatagtgagaccccaatctctacag agtataa chr7:74606695-74607195 + 7 3.50e-18 ggattg agccgctgcactccagcctgggcaacacagcgagaccctatgtcttaaag aaaGGGCAGA chr6:26125707-26126207 - 10 4.66e-17 ACCTGAGGTC AGGAGTTCGAGACCAGCCCGGCTAACCTGGTGAAACTCCGTTTCTACTGG TGGCGGGCG chr6:127737078-127737578 - 42 7.75e-17 GTGATCTTG AGAGGCTCAACTTAAGCCTGGAGTTTATGTAAATAGCCTTTGTCCTGAAG ATATATGTAT chrX:73846139-73846639 + 37 1.35e-15 ACTCCCTGCT GGAAGGGAAAGGTGAGACTGAGGTATGTGGAGAGGACCCTCCTTTTCTAG TGCATAGGAT chr12:121801962-12180246 - 15 5.78e-15 AAGCCAGTTA AGATGCTTGAGACGATCTTGCTTTATAAAGCTAAGGTTCTAGCTTTATGC TTTTGAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2385398-2385898 8.6e-21 43_[+9]_7 chr7:74606695-74607195 3.5e-18 6_[+9]_44 chr6:26125707-26126207 4.7e-17 9_[-9]_41 chr6:127737078-127737578 7.7e-17 41_[-9]_9 chrX:73846139-73846639 1.4e-15 36_[+9]_14 chr12:121801962-12180246 5.8e-15 14_[-9]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG width=50 seqs=6 chr19:2385398-2385898 ( 44) AGGAGTTCAAGGCCAGACTGGACAACATAGTGAGACCCCAATCTCTACAG 1 chr7:74606695-74607195 ( 7) AGCCGCTGCACTCCAGCCTGGGCAACACAGCGAGACCCTATGTCTTAAAG 1 chr6:26125707-26126207 ( 10) AGGAGTTCGAGACCAGCCCGGCTAACCTGGTGAAACTCCGTTTCTACTGG 1 chr6:127737078-127737578 ( 42) AGAGGCTCAACTTAAGCCTGGAGTTTATGTAAATAGCCTTTGTCCTGAAG 1 chrX:73846139-73846639 ( 37) GGAAGGGAAAGGTGAGACTGAGGTATGTGGAGAGGACCCTCCTTTTCTAG 1 chr12:121801962-12180246 ( 15) AGATGCTTGAGACGATCTTGCTTTATAAAGCTAAGGTTCTAGCTTTATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30600 bayes= 12.7635 E= 1.6e+003 196 -923 -78 -923 -923 -923 180 -923 122 -78 22 -923 122 -78 -78 -36 -923 -923 180 -923 -923 81 -78 64 -923 -923 -78 196 -36 81 -78 -36 122 -78 22 -923 222 -923 -923 -923 -923 22 122 -923 64 -923 22 64 -923 122 -923 64 -36 81 22 -923 222 -923 -923 -923 -923 -923 154 -36 64 122 -923 -923 -923 154 -923 -36 -923 -78 -923 196 -923 -923 180 -923 -36 -78 122 -923 64 -78 22 -36 -923 22 22 64 122 -923 -923 122 196 -923 -923 -36 -923 81 -923 122 164 -78 -78 -923 -36 -78 -923 164 122 -923 81 -923 -923 -923 154 -36 64 22 -923 64 -36 -923 122 -36 222 -923 -923 -923 64 -923 81 -36 164 -923 22 -923 -36 81 22 -923 -923 122 -923 64 -923 154 -923 -36 -923 122 -923 64 64 -923 -78 122 64 -78 -923 122 -923 -78 81 64 -923 22 -923 164 -923 81 -923 122 -923 22 -923 164 -36 -923 -923 196 122 22 -78 -923 64 -78 -923 122 164 -923 22 -923 -923 -78 154 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 6 E= 1.6e+003 0.833333 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.166667 0.333333 0.000000 0.500000 0.166667 0.166667 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.166667 0.333333 0.000000 0.000000 0.166667 0.833333 0.166667 0.500000 0.166667 0.166667 0.500000 0.166667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.333333 0.000000 0.333333 0.333333 0.000000 0.666667 0.000000 0.333333 0.166667 0.500000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.333333 0.666667 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.333333 0.166667 0.333333 0.166667 0.000000 0.333333 0.333333 0.333333 0.500000 0.000000 0.000000 0.500000 0.833333 0.000000 0.000000 0.166667 0.000000 0.500000 0.000000 0.500000 0.666667 0.166667 0.166667 0.000000 0.166667 0.166667 0.000000 0.666667 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.833333 0.166667 0.333333 0.333333 0.000000 0.333333 0.166667 0.000000 0.666667 0.166667 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.500000 0.166667 0.666667 0.000000 0.333333 0.000000 0.166667 0.500000 0.333333 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.833333 0.000000 0.166667 0.000000 0.666667 0.000000 0.333333 0.333333 0.000000 0.166667 0.500000 0.333333 0.166667 0.000000 0.500000 0.000000 0.166667 0.500000 0.333333 0.000000 0.333333 0.000000 0.666667 0.000000 0.500000 0.000000 0.500000 0.000000 0.333333 0.000000 0.666667 0.166667 0.000000 0.000000 0.833333 0.500000 0.333333 0.166667 0.000000 0.333333 0.166667 0.000000 0.500000 0.666667 0.000000 0.333333 0.000000 0.000000 0.166667 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRAGYTCRASDYSAGMCTGGNBWAYATRGHGARRSYCYWWKYYYTMWRG MEME-9 regular expression -------------------------------------------------------------------------------- AG[AG]AG[CT]TC[AG]A[GC][AGT][CT][CG]AG[CA]CTGG[AG][CGT][AT]A[CT]AT[AG]G[ACT]GA[GA][AG][CG][CT]C[CT][TA][TA][GT][TC][CT][TC]T[AC][TA][AG]G -------------------------------------------------------------------------------- Time 2564.26 secs. ******************************************************************************** ******************************************************************************** MOTIF AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 width = 40 sites = 7 llr = 197 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 Description -------------------------------------------------------------------------------- Simplified A 9:74467::3131::::3:9463::6a334:aa6913:14 pos.-specific C :3:134:4:6973149319::13631:1::6::4137:1: probability G :7:3::::::::3::::3::41:331:413:::::3:4:: matrix T 1:313:36a1::39617311114141:1634::::3:676 bits 2.2 * * ** 2.0 * * ** 1.8 * * ** 1.6 * * * * * ** * Relative 1.3 * * * * * * ** ** * ** * * Entropy 1.1 * * **** ** **** ** * **** **** (40.6 bits) 0.9 *** **** ** **** ** * * ***** **** 0.7 *** ******* **** *** * * ***** **** 0.4 *** ******** **** ********* ******* **** 0.2 ************ **** ***************** **** 0.0 ---------------------------------------- Multilevel AGAAAAATTCCCCTTCTACAAATCTAAGTACAAAACCTTT consensus CTGCCTC A AG C CG G AGC AAGT C GAG A sequence T T T C G T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------------------- chr15:44287903-44288403 + 11 4.38e-19 TTAGCACAAA AGAGAAATTCCCCTTCTACAGAAGCAAGTACAAAACCTTT CTAGTCGCTC chr12:89351086-89351586 + 21 7.24e-15 TGCATCCCCA ACAATCTCTCCCGTCCTGCAAATCTTAATTCAAAATCGAA CGATAGAAAA chr5:55160091-55160591 + 3 2.62e-13 CT TCTACAACTAAAATTCCTCAAACCTAAAATCAACAGCTTT TATGCCTTTG chr17:59166058-59166558 + 43 3.77e-13 CCAGGCCTTG AGATCATTTTCAGTTCTGCTACTTGAATAACAACATCTTT GTTCCTCAAG chr12:132791354-13279185 - 44 4.05e-13 ACATCTGTGC AGACACATTCCCCTCCTATAGTCCTCAGTGTAACAACTCT GCAGATGTGT chrX:73818305-73818805 + 46 4.65e-13 TACTGGCCTC AGTAACATTACCTTTTCTCATGACCAAGGGTAAAAGAGTA AATTGATAGG chr4:23973429-23973929 + 32 1.16e-12 TTTATTCTGC AGAGTAACTCCCTCCCTCCAGATGGGACTATAAACCAGTA GAATGGAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:44287903-44288403 4.4e-19 10_[+10]_50 chr12:89351086-89351586 7.2e-15 20_[+10]_40 chr5:55160091-55160591 2.6e-13 2_[+10]_58 chr17:59166058-59166558 3.8e-13 42_[+10]_18 chr12:132791354-13279185 4e-13 43_[-10]_17 chrX:73818305-73818805 4.7e-13 45_[+10]_15 chr4:23973429-23973929 1.2e-12 31_[+10]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW width=40 seqs=7 chr15:44287903-44288403 ( 11) AGAGAAATTCCCCTTCTACAGAAGCAAGTACAAAACCTTT 1 chr12:89351086-89351586 ( 21) ACAATCTCTCCCGTCCTGCAAATCTTAATTCAAAATCGAA 1 chr5:55160091-55160591 ( 3) TCTACAACTAAAATTCCTCAAACCTAAAATCAACAGCTTT 1 chr17:59166058-59166558 ( 43) AGATCATTTTCAGTTCTGCTACTTGAATAACAACATCTTT 1 chr12:132791354-13279185 ( 44) AGACACATTCCCCTCCTATAGTCCTCAGTGTAACAACTCT 1 chrX:73818305-73818805 ( 46) AGTAACATTACCTTTTCTCATGACCAAGGGTAAAAGAGTA 1 chr4:23973429-23973929 ( 32) AGAGTAACTCCCTCCCTCCAGATGGGACTATAAACCAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 40 n= 36600 bayes= 12.1958 E= 1.3e+002 200 -945 -945 -58 -945 0 132 -945 174 -945 -945 42 100 -100 0 -58 100 0 -945 42 142 58 -945 -945 174 -945 -945 42 -945 58 -945 142 -945 -945 -945 222 42 100 -945 -58 -58 158 -945 -945 42 132 -945 -945 -58 0 0 42 -945 -100 -945 200 -945 58 -945 142 -945 158 -945 -58 -945 0 -945 174 42 -100 0 42 -945 158 -945 -58 200 -945 -945 -58 100 -945 58 -58 142 -100 -100 -58 42 0 -945 100 -945 100 0 -58 -945 0 0 100 142 -100 -100 -58 222 -945 -945 -945 42 -100 58 -58 42 -945 -100 142 100 -945 0 42 -945 100 -945 100 222 -945 -945 -945 222 -945 -945 -945 142 58 -945 -945 200 -100 -945 -945 -58 0 0 42 42 132 -945 -945 -945 -945 58 142 -58 -100 -945 174 100 -945 -945 142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 40 nsites= 7 E= 1.3e+002 0.857143 0.000000 0.000000 0.142857 0.000000 0.285714 0.714286 0.000000 0.714286 0.000000 0.000000 0.285714 0.428571 0.142857 0.285714 0.142857 0.428571 0.285714 0.000000 0.285714 0.571429 0.428571 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 1.000000 0.285714 0.571429 0.000000 0.142857 0.142857 0.857143 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.142857 0.285714 0.285714 0.285714 0.000000 0.142857 0.000000 0.857143 0.000000 0.428571 0.000000 0.571429 0.000000 0.857143 0.000000 0.142857 0.000000 0.285714 0.000000 0.714286 0.285714 0.142857 0.285714 0.285714 0.000000 0.857143 0.000000 0.142857 0.857143 0.000000 0.000000 0.142857 0.428571 0.000000 0.428571 0.142857 0.571429 0.142857 0.142857 0.142857 0.285714 0.285714 0.000000 0.428571 0.000000 0.571429 0.285714 0.142857 0.000000 0.285714 0.285714 0.428571 0.571429 0.142857 0.142857 0.142857 1.000000 0.000000 0.000000 0.000000 0.285714 0.142857 0.428571 0.142857 0.285714 0.000000 0.142857 0.571429 0.428571 0.000000 0.285714 0.285714 0.000000 0.571429 0.000000 0.428571 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.142857 0.285714 0.285714 0.285714 0.285714 0.714286 0.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.142857 0.142857 0.000000 0.714286 0.428571 0.000000 0.000000 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARHMAYTMCCNTYCTNCARAHSBAARWDYAAMANCKTW MEME-10 regular expression -------------------------------------------------------------------------------- A[GC][AT][AG][ACT][AC][AT][TC]T[CA]C[CA][CGT]T[TC]C[TC][AGT]CA[AG]A[TAC][CG][TCG]AA[GA][TA][AGT][CT]AA[AC]A[CGT][CA][TG]T[TA] -------------------------------------------------------------------------------- Time 2826.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26125707-26126207 4.39e-10 9_[-9(4.66e-17)]_12_[+6(6.86e-05)]_\ 13 chr4:83034862-83035362 2.45e-01 2_[+4(1.44e-05)]_82 chr17:14622761-14623261 4.65e-04 57_[+5(7.15e-07)]_31 chr14:50947411-50947911 7.30e-03 43_[+2(8.30e-05)]_35 chr2:199850824-199851324 9.75e-02 6_[-1(2.16e-05)]_33_[+1(8.25e-05)]_\ 17 chr9:116687184-116687684 5.41e-02 [+4(5.82e-05)]_62_[+1(1.13e-05)] chr16:68084542-68085042 1.88e-02 20_[+1(1.37e-07)]_58 chr2:174334933-174335433 1.01e-05 10_[+2(2.82e-06)]_68 chr7:27190266-27190766 2.92e-01 100 chr1:25771318-25771818 4.53e-01 100 chr19:13150325-13150825 9.04e-02 24_[+5(3.87e-05)]_64 chr6:106084818-106085318 3.85e-10 5_[+3(1.98e-08)]_1_[-2(1.68e-06)]_\ 22_[+2(6.34e-07)]_6 chrX:73846139-73846639 1.12e-10 36_[+9(1.35e-15)]_14 chr15:52568782-52569282 6.64e-02 [-1(1.41e-05)]_78 chr6:85125189-85125689 2.81e-04 4_[-5(9.03e-06)]_7_[+2(1.04e-05)]_\ 10_[+2(6.60e-06)]_23 chr5:317278-317778 1.82e-01 9_[+4(2.94e-06)]_75 chr11:65900283-65900783 7.28e-01 100 chr7:27115298-27115798 5.83e-01 100 chr19:47698173-47698673 1.57e-05 14_[+8(2.07e-08)]_56 chr1:51519453-51519953 2.07e-06 5_[-2(9.71e-07)]_35_[-3(4.25e-07)]_\ 16 chr20:18497155-18497655 2.61e-06 49_[-3(5.15e-08)]_29 chr17:76072555-76073055 9.05e-01 100 chr9:129628300-129628800 1.48e-01 42_[+3(6.89e-05)]_36 chr6:37692136-37692636 5.58e-01 100 chr9:22005998-22006498 2.04e-05 5_[+6(8.22e-10)]_79 chr10:79129272-79129772 2.33e-01 83_[-4(1.00e-05)]_1 chr12:110270652-11027115 1.12e-05 24_[-3(3.24e-07)]_15_[+4(5.57e-06)]_\ 23 chr1:38013261-38013761 9.75e-02 44_[-2(4.82e-05)]_34 chr5:55160091-55160591 5.15e-10 2_[+10(2.62e-13)]_[-10(3.93e-05)]_\ 18 chr4:1870657-1871157 1.28e-01 43_[-1(4.94e-06)]_35 chr5:172437774-172438274 2.88e-03 57_[+5(2.61e-07)]_31 chr1:231626761-231627261 8.89e-01 100 chr10:121598560-12159906 1.83e-02 14_[-2(4.82e-05)]_64 chr14:91743979-91744479 2.10e-01 100 chr5:181187702-181188202 2.03e-01 40_[-6(5.13e-05)]_44 chr1:211592070-211592570 3.44e-03 25_[+2(1.12e-06)]_53 chr1:164774526-164775026 1.91e-01 100 chr1:155688967-155689467 4.15e-01 100 chr7:5554619-5555119 2.55e-02 60_[-4(3.27e-05)]_24 chr1:58812159-58812659 1.51e-02 76_[-2(1.98e-05)]_2 chr20:50153937-50154437 7.03e-01 100 chr10:103854573-10385507 2.53e-01 100 chr12:109052734-10905323 1.60e-01 100 chr12:120534406-12053490 7.11e-02 24_[+6(9.06e-05)]_60 chr17:57850078-57850578 5.82e-02 74_[+4(1.44e-05)]_10 chr6:57242763-57243263 7.52e-02 100 chr6:28597402-28597902 1.72e-01 17_[-2(1.45e-05)]_61 chr7:27175408-27175908 9.10e-01 100 chr3:194139379-194139879 1.50e-03 61_[-1(3.85e-07)]_17 chr7:64562733-64563233 8.16e-02 60_[-6(4.58e-05)]_8_[+5(1.81e-05)]_\ 4 chr6:125986480-125986980 8.77e-01 100 chr1:92934790-92935290 7.23e-03 100 chr1:149390381-149390881 4.65e-03 49_[+1(1.96e-07)]_29 chr7:128409882-128410382 5.12e-03 68_[+4(3.26e-07)]_16 chr15:60001181-60001681 5.24e-02 2_[-2(9.87e-05)]_7_[+2(6.60e-06)]_\ 47 chr15:65869075-65869575 7.80e-01 100 chr6:28769830-28770330 5.80e-03 16_[-2(9.05e-05)]_11_[+2(5.87e-06)]_\ 29 chr10:22912346-22912846 4.96e-02 11_[+5(7.56e-06)]_77 chr18:26549150-26549650 1.20e-02 71_[-1(1.98e-06)]_7 chr2:127408091-127408591 2.57e-01 59_[+1(1.75e-05)]_19 chr8:141000267-141000767 7.33e-05 32_[-4(6.62e-07)]_52 chr10:101354315-10135481 3.53e-01 100 chr22:38656680-38657180 5.61e-01 100 chr1:184622419-184622919 9.30e-02 6_[-2(6.96e-05)]_72 chr3:169526444-169526944 1.33e-07 1_[-5(9.03e-06)]_17_[-5(4.98e-06)]_\ 21_[-3(4.65e-07)]_15 chr18:31555997-31556497 2.69e-01 100 chr3:185280831-185281331 4.51e-01 100 chr7:99919030-99919530 3.26e-02 33_[-1(2.66e-05)]_45 chr1:58515980-58516480 2.12e-07 2_[-2(8.44e-07)]_52_[-3(4.36e-09)]_\ 2 chr5:151771997-151772497 2.69e-01 5_[-1(1.26e-05)]_22_[-1(6.91e-05)]_\ 29 chr4:86594313-86594813 1.00e-04 64_[+4(1.48e-07)]_1_[-6(3.47e-07)]_\ 3 chr17:42275293-42275793 1.00e-01 100 chr1:152111240-152111740 2.51e-02 21_[-4(1.64e-06)]_14_[-4(8.61e-05)]_\ 33 chr2:25878545-25879045 7.97e-01 100 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chr15:40769708-40770208 1.09e-01 40_[+5(5.60e-06)]_48 chr16:22219992-22220492 2.30e-09 30_[+7(3.14e-16)]_25 chr1:178542479-178542979 4.08e-02 61_[-1(6.19e-07)]_17 chr19:43528127-43528627 1.11e-01 100 chr19:40405191-40405691 6.39e-01 100 chr22:46737707-46738207 7.99e-02 31_[-1(1.98e-06)]_47 chr22:19855844-19856344 8.87e-03 61_[+5(4.53e-06)]_27 chr19:12757776-12758276 9.57e-02 73_[+4(5.74e-07)]_11 chr18:9914880-9915380 8.36e-01 100 chr9:32572436-32572936 5.97e-02 100 chr9:126651140-126651640 1.18e-01 60_[+1(3.84e-06)]_18 chr17:8016203-8016703 5.44e-01 100 chr2:189441230-189441730 5.39e-02 64_[+4(3.75e-07)]_20 chr1:225651896-225652396 7.66e-02 100 chr1:85201467-85201967 3.88e-04 1_[+1(4.25e-09)]_77 chrX:129654593-129655093 4.23e-03 18_[-1(3.58e-05)]_24_[+1(5.30e-07)]_\ 14 chr1:236301725-236302225 2.52e-07 4_[+3(1.07e-06)]_8_[-2(6.87e-08)]_\ 17_[-3(3.24e-06)]_5 chr9:122093064-122093564 9.99e-01 100 chr1:224872952-224873452 5.36e-03 10_[-2(1.91e-06)]_68 chr15:78077304-78077804 7.81e-02 76_[-1(9.75e-07)]_2 chr12:57454943-57455443 7.86e-01 100 chr11:65888594-65889094 7.84e-01 100 chr17:42388787-42389287 1.18e-01 100 chr12:68933226-68933726 6.85e-01 100 chr6:150627940-150628440 2.25e-03 29_[-10(3.02e-05)]_31 chr1:87328479-87328979 2.63e-01 84_[+4(4.09e-05)] chr9:85940541-85941041 1.31e-01 10_[+5(7.17e-05)]_78 chr3:197211642-197212142 2.57e-04 23_[-2(1.68e-06)]_55 chr22:24952774-24953274 9.93e-01 100 chr6:111888843-111889343 2.04e-03 31_[+2(5.21e-06)]_47 chr5:36875667-36876167 4.63e-01 100 chr18:58221069-58221569 7.78e-01 100 chr6:156933388-156933888 3.08e-05 43_[-5(1.07e-05)]_12_[-2(1.04e-05)]_\ 11 chr6:131135276-131135776 8.92e-05 27_[-6(2.92e-07)]_2_[-1(3.52e-08)]_\ 33 chr10:112956678-11295717 6.82e-01 100 chr7:26291907-26292407 2.76e-01 55_[-1(5.25e-05)]_23 chr12:132791354-13279185 5.38e-06 2_[-10(8.69e-05)]_1_[-10(4.05e-13)]_\ 17 chr20:11881534-11882034 2.28e-06 39_[-5(2.47e-08)]_6_[+2(1.98e-05)]_\ 21 chr12:94615817-94616317 3.52e-01 100 chr11:10807911-10808411 8.90e-02 5_[-1(4.78e-05)]_73 chr1:92298889-92299389 2.15e-01 100 chr5:80645067-80645567 4.52e-05 1_[+8(3.04e-09)]_26_[+8(6.07e-06)]_\ 13 chr10:110567727-11056822 3.37e-03 34_[+4(2.57e-09)]_50 chr15:89090623-89091123 2.15e-10 [+2(2.98e-05)]_27_[+7(8.33e-15)]_6 chr5:38258620-38259120 7.54e-01 100 chr8:55879908-55880408 4.16e-03 37_[+1(3.85e-07)]_41 chr17:27546020-27546520 2.54e-01 100 chr11:107017591-10701809 3.28e-03 42_[+1(9.49e-08)]_11_[+1(1.98e-06)]_\ 3 chr3:4680329-4680829 4.86e-07 19_[-5(4.98e-06)]_22_[+8(8.35e-06)]_\ 17 chr1:116373208-116373708 1.55e-01 100 chr8:9002885-9003385 3.41e-02 37_[+1(7.99e-06)]_41 chr12:113245897-11324639 1.62e-01 100 chr3:171809249-171809749 8.63e-02 100 chr9:137244033-137244533 5.74e-01 100 chr17:19317422-19317922 1.59e-02 51_[-5(5.12e-05)]_37 chr8:42897165-42897665 6.56e-01 100 chr2:109129527-109130027 5.87e-01 100 chr17:78723387-78723887 3.38e-02 61_[+4(1.44e-05)]_23 chr1:50968489-50968989 4.23e-06 74_[+3(4.60e-08)]_4 chr17:732011-732511 1.47e-02 70_[-1(6.30e-06)]_8 chr5:96807739-96808239 6.99e-01 100 chr8:47960758-47961258 1.93e-02 60_[+1(3.84e-06)]_18 chr5:93249861-93250361 3.29e-01 100 chr16:31108407-31108907 6.70e-01 38_[-1(1.95e-05)]_40 chr10:110144321-11014482 5.74e-03 45_[+10(1.02e-05)]_15 chr2:178451608-178452108 8.89e-01 100 chr11:64230083-64230583 1.41e-01 10_[-1(2.40e-05)]_36_[+1(9.80e-05)]_\ 10 chr19:11384134-11384634 2.99e-02 65_[+4(2.94e-06)]_19 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************