# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 269 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 17:00:13 PST 2017)
#   negatives: 269 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 17:00:14 PST 2017)
#        host: kadru
#        when: Mon Dec 18 17:04:39 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.280 C 0.231 G 0.219 T 0.270


MOTIF AKTGGAAT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AKTGGAAT   ATTCCAMT         29          1   1.4e-008   1.9e-004
#         AGTGGAAT   ATTCCACT         22          1   1.9e-006   2.7e-002
#         ATTGGAAT   ATTCCAAT         10          0   9.0e-004   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 1.9e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.711111 0.288889
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GAATGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAATGGAA   TTCCATTC         38          6   1.7e-007   2.4e-003
#         GAATGGAA   TTCCATTC         38          6   1.7e-007   2.4e-003

letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 2.4e-003
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GATGRTAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GATGRTAA   TTAYCATC         20          0   6.6e-007   9.1e-003
#         GATGGTAA   TTACCATC         12          0   2.2e-004   3.0e+000
#         GATGATAA   TTATCATC         10          0   9.0e-004   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 9.1e-003
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.478261 0.000000 0.521739 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 14.09 seconds