Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
SCGCGTCTACRCGGSC | 16 | CCGCGTCTACGCGGGC |
RCGYTYGCYTMRCAHGCRARAGGTCCCSGGTTCRAWY | 37 | GCGTTCGCCTCGCAAGCGAGAGGTCCCGGGTTCGAAC |
TTWWYTTTRTWTTTTWWDWAVW | 22 | TTATTTTTATTTTTTTTGAAAA |
GGYNCSATGGYSKARTGGTTARSRCKHTGGACTYTDAATC | 40 | GGCGCCATGGCGTAGTGGTTAGGGCGCTGGACTTTGAATC |
AKYCCCATTTTACAGATGRGGA | 22 | AGCCCCATTTTACAGATGAGGA |
CGGGGSBSGSGGCGGCGGCGSS | 22 | CGGGGCCGGGGGCGGCGGCGGG |
YTGGCACYNTGCCARR | 16 | TTGGCACCGTGCCAAG |
TTTRKGTMCWTTGATATWTTATGTACASTRYATAATAWWTMTT | 43 | TTTGTGTCCTTTGATATTTTATGTACAGTATATAATATTTCTT |
GTAGYKYAGTGGTWRW | 16 | GTAGCTCAGTGGTAGA |
TRNCRGRRGTGGGRTTCGAACCCACGCSK | 29 | TGCCAGGGGTGGGATTCGAACCCACGCGT |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.224 C 0.276 G 0.276 T 0.224
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
SCGCGTCTACRCGGSC | MEME-1 | chr19 | + | 36009432 | 36009447 | 2.33e-09 | 0.00128 | GCGCGTCTACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | + | 84504257 | 84504272 | 6.02e-09 | 0.00128 | CCGCGTCTACACAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr6 | - | 34144410 | 34144425 | 6.63e-09 | 0.00128 | GCGCGTCTACGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | + | 49960792 | 49960807 | 9.72e-09 | 0.00141 | GCGCGTCTACGCGGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | + | 111033421 | 111033436 | 2.08e-08 | 0.00171 | GCGCGTCTACGCAGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | + | 43862145 | 43862160 | 2.2e-08 | 0.00171 | cggcgtctacgcggcc |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | - | 48610690 | 48610705 | 2.2e-08 | 0.00171 | CGGCGTCTACGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | - | 39672072 | 39672087 | 2.84e-08 | 0.00171 | CCGCGTCTACGCCGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr11 | + | 66278031 | 66278046 | 3e-08 | 0.00171 | CCGCGTCTACGCTGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | - | 148876257 | 148876272 | 3.18e-08 | 0.00171 | CCGCGTCTACACTGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | + | 17303346 | 17303361 | 3.28e-08 | 0.00171 | GTGCGTCTACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | - | 238159357 | 238159372 | 3.53e-08 | 0.00171 | CGGCGTCTACACGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | - | 138834334 | 138834349 | 4.7e-08 | 0.00197 | CCGCGTCTATGCGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr20 | - | 46895297 | 46895312 | 4.75e-08 | 0.00197 | CCGCGTCTACACCGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 144516067 | 144516082 | 6.22e-08 | 0.0024 | GAGCGTCTACGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | + | 1486027 | 1486042 | 6.62e-08 | 0.0024 | CCGCGTCTACACCGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | + | 156675105 | 156675120 | 7.43e-08 | 0.00254 | GCGCGTCTATGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 174682206 | 174682221 | 9.79e-08 | 0.00316 | GCGCGTCTACGCCGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr8 | + | 22367305 | 22367320 | 1.15e-07 | 0.00334 | GCGTGTCTACGCGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr20 | + | 56925679 | 56925694 | 1.15e-07 | 0.00334 | GCGTGTCTACGCGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 18292307 | 18292322 | 1.66e-07 | 0.0046 | CCGCGTCTACGCGGCA |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | + | 12792280 | 12792295 | 2.08e-07 | 0.0055 | GGGCGTCTACGCCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 96217492 | 96217507 | 2.2e-07 | 0.00553 | CTTCGTCTACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr15 | + | 52179382 | 52179397 | 2.29e-07 | 0.00553 | CCGCGCCTACACGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | + | 52949271 | 52949286 | 2.51e-07 | 0.00582 | CAGCGTCTATGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | - | 22207107 | 22207122 | 2.99e-07 | 0.00654 | GCGCGTCTATACAGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr6 | + | 159692904 | 159692919 | 3.04e-07 | 0.00654 | GACCGTCTACGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 38570298 | 38570313 | 3.18e-07 | 0.00659 | AGGCGTCTACACGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 61177117 | 61177132 | 4.01e-07 | 0.00782 | TCGCGTCTACACTGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 236065037 | 236065052 | 4.04e-07 | 0.00782 | CCGCGTCCACGCAGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 24294417 | 24294432 | 4.23e-07 | 0.00788 | CACCGTCTACACAGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 93482395 | 93482410 | 4.34e-07 | 0.00788 | CCGCGTCTACGCAGTG |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 49158464 | 49158479 | 4.7e-07 | 0.00801 | GAGCGTCTACACTGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | - | 74984495 | 74984510 | 4.77e-07 | 0.00801 | CAGCGTCTACGCGGTT |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | - | 25800023 | 25800038 | 5.06e-07 | 0.00801 | TCGCGTCTATGCGGTC |
SCGCGTCTACRCGGSC | MEME-1 | chrX | - | 49878927 | 49878942 | 5.13e-07 | 0.00801 | CCTCGTCTATGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chrX | + | 134713814 | 134713829 | 5.13e-07 | 0.00801 | GTGTGTCTACACGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr5 | + | 112922281 | 112922296 | 5.24e-07 | 0.00801 | gcgCGTCTACGCGTCC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 8209874 | 8209889 | 5.62e-07 | 0.00837 | AGCCGTCTACGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | - | 6443775 | 6443790 | 5.88e-07 | 0.00854 | ACCCGTCTACACCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | - | 119206841 | 119206856 | 6.33e-07 | 0.00897 | CGGGGTCTACGCGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | - | 30893783 | 30893798 | 6.49e-07 | 0.00898 | AGGCGTCTACGCTGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 97854495 | 97854510 | 6.95e-07 | 0.00939 | CGCCGTCTATGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | - | 79992249 | 79992264 | 7.8e-07 | 0.0103 | ACGGGTCTACGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | + | 53347617 | 53347632 | 8.37e-07 | 0.0107 | CCGCCTCTACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr7 | + | 117873290 | 117873305 | 8.5e-07 | 0.0107 | CCGCGTCTACACTAGC |
SCGCGTCTACRCGGSC | MEME-1 | chrX | - | 155264544 | 155264559 | 8.72e-07 | 0.0107 | TCGCGTCTACGCGGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | + | 53939175 | 53939190 | 8.88e-07 | 0.0107 | CGCCGTCTATACGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr18 | + | 48008593 | 48008608 | 9.82e-07 | 0.0115 | CCGCGTCTACACCGCA |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | - | 53963528 | 53963543 | 1.03e-06 | 0.0115 | CGGCGTCTACACGGAA |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | + | 42368659 | 42368674 | 1.05e-06 | 0.0115 | CCGCGTCTACACCTGC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 49158416 | 49158431 | 1.12e-06 | 0.0115 | GGGTGTCTACACAGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | + | 15332398 | 15332413 | 1.13e-06 | 0.0115 | CCGCGTCCATGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr21 | - | 46635722 | 46635737 | 1.14e-06 | 0.0115 | CCGCGTCCACACCGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 50333113 | 50333128 | 1.15e-06 | 0.0115 | CCGCGTCCACACTGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr15 | - | 70492729 | 70492744 | 1.15e-06 | 0.0115 | ACGCGTCCACGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 61017697 | 61017712 | 1.21e-06 | 0.0115 | GCTGGTCTACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 133335964 | 133335979 | 1.42e-06 | 0.0115 | ACTCGTCTACACCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | - | 89605533 | 89605548 | 1.52e-06 | 0.0115 | CCGCGTCTACACTTAC |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | - | 50867830 | 50867845 | 1.53e-06 | 0.0115 | GCTGGTCTACACGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | - | 43089165 | 43089180 | 1.6e-06 | 0.0115 | CAGTGTCTACGCGGCT |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | - | 27085784 | 27085799 | 1.66e-06 | 0.0115 | CGGAGTCTACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | - | 137448838 | 137448853 | 1.7e-06 | 0.0115 | CTCTGTCTACACTGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 237456409 | 237456424 | 1.7e-06 | 0.0115 | CTCTGTCTACACTGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132791919 | 132791934 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132791954 | 132791969 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132791989 | 132792004 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792024 | 132792039 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792133 | 132792148 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792133 | 132792148 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792170 | 132792185 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792170 | 132792185 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792205 | 132792220 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792205 | 132792220 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792279 | 132792294 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792279 | 132792294 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792314 | 132792329 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792314 | 132792329 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792349 | 132792364 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792349 | 132792364 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792386 | 132792401 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792386 | 132792401 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792421 | 132792436 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792456 | 132792471 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792493 | 132792508 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792600 | 132792615 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792635 | 132792650 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792670 | 132792685 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792707 | 132792722 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792742 | 132792757 | 1.79e-06 | 0.0115 | CAGCGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr7 | + | 28410941 | 28410956 | 1.81e-06 | 0.0116 | CCCCGTCTACACCGTT |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | - | 137771847 | 137771862 | 1.88e-06 | 0.0119 | TCGCGTCTATGCGGGT |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792777 | 132792792 | 2.14e-06 | 0.0134 | CAGCGTCTACACCGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | + | 42368752 | 42368767 | 2.23e-06 | 0.0138 | CCGCGTCTCCACAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr14 | + | 71321090 | 71321105 | 2.48e-06 | 0.0152 | GGCCGTCTACACGGTT |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | + | 194138124 | 194138139 | 2.56e-06 | 0.0155 | CCCCGTCTACACCAGC |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | - | 20267221 | 20267236 | 2.62e-06 | 0.0157 | ACTTGTCTACACGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | - | 137448811 | 137448826 | 2.69e-06 | 0.016 | GTCTGTCTACACTGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | - | 54082266 | 54082281 | 2.8e-06 | 0.0164 | CTCTGTCTATGCAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 228486768 | 228486783 | 3.15e-06 | 0.0183 | GCACGTCCACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 73730631 | 73730646 | 3.38e-06 | 0.0194 | CGCCGTCTACGCAGTG |
SCGCGTCTACRCGGSC | MEME-1 | chr15 | - | 66803359 | 66803374 | 3.84e-06 | 0.0218 | GCGTGTCCATGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr15 | - | 101489454 | 101489469 | 4.22e-06 | 0.0238 | CCCCGTCTACACCAAC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | - | 153990949 | 153990964 | 4.31e-06 | 0.0241 | TCCCGTCTATGCGGGT |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | - | 15332199 | 15332214 | 4.37e-06 | 0.0241 | CGGTGTCTACGCGTAC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 224183368 | 224183383 | 4.58e-06 | 0.0251 | GTGGGTCTACACCGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 222861071 | 222861086 | 4.69e-06 | 0.0254 | AGTTGTCTACGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr20 | - | 57710174 | 57710189 | 5.12e-06 | 0.0275 | CCGGGTCTACGTGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 132792061 | 132792076 | 5.84e-06 | 0.031 | CAGTGTCTACACTGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | - | 236167842 | 236167857 | 5.87e-06 | 0.031 | TTTCGTCTACACCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 12068654 | 12068669 | 5.95e-06 | 0.0312 | CTGTGTCTATGCGGTT |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | - | 30824463 | 30824478 | 6.04e-06 | 0.0313 | AGCTGTCTACACCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr5 | - | 38783050 | 38783065 | 6.19e-06 | 0.0318 | TCTTGTCTACACAGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr8 | - | 80332112 | 80332127 | 6.23e-06 | 0.0318 | GTATGTCTACACAGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | + | 49961788 | 49961803 | 6.44e-06 | 0.0325 | CACGGTCTACACCGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | + | 49968879 | 49968894 | 6.63e-06 | 0.0332 | CTGCGTCTCCGCAGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | - | 108034660 | 108034675 | 6.85e-06 | 0.034 | GACTGTCTATGCAGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | + | 184513824 | 184513839 | 7.09e-06 | 0.0349 | ACCAGTCTACGCGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr11 | + | 119218649 | 119218664 | 7.65e-06 | 0.0373 | caccgtctacactacc |
SCGCGTCTACRCGGSC | MEME-1 | chr13 | - | 19957492 | 19957507 | 8.18e-06 | 0.0396 | CCTCGTCTACACCTAC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 97854747 | 97854762 | 8.28e-06 | 0.0397 | GGCTGCCTACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | + | 1984037 | 1984052 | 9.48e-06 | 0.045 | ccgcctccacacgggc |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 8053845 | 8053860 | 9.53e-06 | 0.045 | GTCCGTCTACACTGAG |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 200247667 | 200247682 | 1.02e-05 | 0.048 | CCGCGCCTATGCGGTG |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 48638775 | 48638790 | 1.19e-05 | 0.0552 | CTGCGTCTATATGGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | + | 73657639 | 73657654 | 1.21e-05 | 0.0557 | agccgtccatgcgggc |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 236142759 | 236142774 | 1.35e-05 | 0.0619 | CGTCGTCTACACCGTG |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | + | 42368694 | 42368709 | 1.42e-05 | 0.0638 | GCAAGTCTACACGGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr15 | + | 71252605 | 71252620 | 1.42e-05 | 0.0638 | TGTTGTCTACACAGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | - | 79992286 | 79992301 | 1.51e-05 | 0.0675 | CCTCGTCCACACAGTT |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | - | 81393024 | 81393039 | 1.61e-05 | 0.0714 | CCGGGTCCACGCAGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr11 | - | 66278115 | 66278130 | 1.62e-05 | 0.0714 | CTGGGTCTCCGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 2945419 | 2945434 | 1.63e-05 | 0.0714 | CCGCGCCCACGCGGGA |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 27086031 | 27086046 | 1.92e-05 | 0.0832 | ACGTGTCTACGTCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | - | 41092018 | 41092033 | 2.01e-05 | 0.0863 | AGGCGTCGACGCCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | + | 42782790 | 42782805 | 2.04e-05 | 0.087 | CGGTGTCCATGCTGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 41884631 | 41884646 | 2.19e-05 | 0.0929 | GCGGGTCTACACGAGA |
SCGCGTCTACRCGGSC | MEME-1 | chr21 | + | 43776180 | 43776195 | 2.25e-05 | 0.0947 | CCCCGTCCCCGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr8 | - | 2044370 | 2044385 | 2.4e-05 | 0.1 | CTGCGTCTACACCACA |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 97854735 | 97854750 | 2.6e-05 | 0.108 | CTCCGCCTATGCGGCT |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 105696583 | 105696598 | 2.62e-05 | 0.108 | acaggtctatgcagtc |
SCGCGTCTACRCGGSC | MEME-1 | chr6 | - | 75526667 | 75526682 | 2.64e-05 | 0.108 | ACACGCCTATGCGGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | + | 95473843 | 95473858 | 2.69e-05 | 0.109 | GCCCGTCTCCACAGGT |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | + | 138834427 | 138834442 | 2.7e-05 | 0.109 | CAGCGTCTCTGCCGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr14 | - | 104816209 | 104816224 | 2.74e-05 | 0.11 | GCCCGTCCTCGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr7 | - | 33062748 | 33062763 | 2.91e-05 | 0.116 | CGCAGTCTACGCGAGC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | - | 137241455 | 137241470 | 3.03e-05 | 0.12 | GCCCGCCCACACCGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 181127049 | 181127064 | 3.08e-05 | 0.121 | CCCAGCCTACGCCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | + | 53963274 | 53963289 | 3.39e-05 | 0.132 | CTGGGTCTACACAAGT |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | - | 46948178 | 46948193 | 3.56e-05 | 0.138 | ATCTGTCTACACTGCA |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | - | 223846081 | 223846096 | 3.85e-05 | 0.148 | CCCCGTCTACCCAGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr14 | + | 102525329 | 102525344 | 4.34e-05 | 0.166 | aacagtctatacggac |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | - | 636823 | 636838 | 4.46e-05 | 0.169 | TCTTGTCTCCGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | - | 27086005 | 27086020 | 4.49e-05 | 0.169 | CCCAGTCTACGCGTGT |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | - | 54036029 | 54036044 | 4.71e-05 | 0.176 | ACTGGTCTATGCAGCT |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 236167892 | 236167907 | 5.2e-05 | 0.194 | GCGAGTCTATGCTGAA |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | - | 50333059 | 50333074 | 5.45e-05 | 0.201 | CCGCGCCCACACCAGC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 13942939 | 13942954 | 5.79e-05 | 0.213 | tgctgtctacactacc |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | - | 49960992 | 49961007 | 5.98e-05 | 0.218 | GGTGGTCCACGCCGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr15 | - | 101489296 | 101489311 | 6.2e-05 | 0.225 | GGGCGCCTCCGCAGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 228486877 | 228486892 | 6.39e-05 | 0.228 | CCCAGCCCACGCGGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 1375267 | 1375282 | 6.42e-05 | 0.228 | TGGCGTCCTCGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 33302207 | 33302222 | 6.51e-05 | 0.228 | CAGCGCCTACATCGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 39407337 | 39407352 | 6.51e-05 | 0.228 | CTCTGTCTCTACGGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr21 | + | 39314004 | 39314019 | 6.54e-05 | 0.228 | GGTCCTCTACGCGGGA |
SCGCGTCTACRCGGSC | MEME-1 | chr22 | - | 41092265 | 41092280 | 6.54e-05 | 0.228 | CCGCGCCGACGCGGAG |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 44197156 | 44197171 | 6.57e-05 | 0.228 | GTGTGCCTACACTTGC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | - | 27085910 | 27085925 | 6.82e-05 | 0.235 | CCAGGTCGACGCAGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 61177324 | 61177339 | 6.85e-05 | 0.235 | ccgcgtccccgcgtcc |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 33373937 | 33373952 | 6.94e-05 | 0.235 | CGGCGTCGCCGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | + | 137448983 | 137448998 | 6.94e-05 | 0.235 | GGGTGCCTACACTGTA |
SCGCGTCTACRCGGSC | MEME-1 | chr14 | - | 22919464 | 22919479 | 6.97e-05 | 0.235 | TCTAGTCTACGCGAGC |
SCGCGTCTACRCGGSC | MEME-1 | chr1 | + | 228486666 | 228486681 | 7.32e-05 | 0.244 | ATGGGTCCACGCAGGG |
SCGCGTCTACRCGGSC | MEME-1 | chr6 | - | 31652671 | 31652686 | 7.35e-05 | 0.244 | AAGTGTCCACGCATCC |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | - | 156674333 | 156674348 | 7.35e-05 | 0.244 | CCGCGTCTACACGCGG |
SCGCGTCTACRCGGSC | MEME-1 | chr9 | - | 85940899 | 85940914 | 7.48e-05 | 0.247 | CCCCGTCTGCGCTGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | - | 95473811 | 95473826 | 7.62e-05 | 0.25 | CGGCGTCTCTGCTGGA |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | + | 12803755 | 12803770 | 7.71e-05 | 0.251 | CCCCGCCTCTGCAGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr3 | + | 9731794 | 9731809 | 7.75e-05 | 0.251 | cacggtctccgccgcc |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | + | 1940934 | 1940949 | 7.82e-05 | 0.252 | GCGCGCCCTCGCGGCC |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 2236431 | 2236446 | 8.05e-05 | 0.258 | CCCCGCCCACGCCAGC |
SCGCGTCTACRCGGSC | MEME-1 | chr20 | - | 63658212 | 63658227 | 8.16e-05 | 0.26 | CCAGGCCTACACGGCG |
SCGCGTCTACRCGGSC | MEME-1 | chr10 | - | 22229274 | 22229289 | 8.3e-05 | 0.264 | CGGGGTCTTCACGGCG |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | + | 13731462 | 13731477 | 8.64e-05 | 0.271 | AGGGGTCTCCACCGGC |
SCGCGTCTACRCGGSC | MEME-1 | chr12 | - | 132828844 | 132828859 | 8.64e-05 | 0.271 | CCACGTCTCCGCCGGA |
SCGCGTCTACRCGGSC | MEME-1 | chr19 | - | 34255188 | 34255203 | 9.01e-05 | 0.28 | CCCGGTCCCCGCGGAC |
SCGCGTCTACRCGGSC | MEME-1 | chr2 | + | 61177316 | 61177331 | 9.01e-05 | 0.28 | gcgcgtccccgcgtcc |
SCGCGTCTACRCGGSC | MEME-1 | chr15 | - | 67521291 | 67521306 | 9.25e-05 | 0.286 | CACGGCCTACACAGCA |
SCGCGTCTACRCGGSC | MEME-1 | chr17 | + | 8125663 | 8125678 | 9.58e-05 | 0.294 | CCTGGCCTACACCGTT |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | + | 3024159 | 3024174 | 9.62e-05 | 0.294 | GGGGGTCTTCGCGGCG |
SCGCGTCTACRCGGSC | MEME-1 | chr5 | + | 125227893 | 125227908 | 9.7e-05 | 0.295 | ACCCGTCTACAAGGTC |
SCGCGTCTACRCGGSC | MEME-1 | chr6 | + | 3898468 | 3898483 | 9.96e-05 | 0.3 | TGATGTCTACACAACC |
SCGCGTCTACRCGGSC | MEME-1 | chr16 | + | 74984559 | 74984574 | 9.96e-05 | 0.3 | TTACGTCCACGCAGCT |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_1 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif SCGCGTCTACRCGGSC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_1 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.