Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
SCGCGTCTACRCGGSC 16 CCGCGTCTACGCGGGC
RCGYTYGCYTMRCAHGCRARAGGTCCCSGGTTCRAWY 37 GCGTTCGCCTCGCAAGCGAGAGGTCCCGGGTTCGAAC
TTWWYTTTRTWTTTTWWDWAVW 22 TTATTTTTATTTTTTTTGAAAA
GGYNCSATGGYSKARTGGTTARSRCKHTGGACTYTDAATC 40 GGCGCCATGGCGTAGTGGTTAGGGCGCTGGACTTTGAATC
AKYCCCATTTTACAGATGRGGA 22 AGCCCCATTTTACAGATGAGGA
CGGGGSBSGSGGCGGCGGCGSS 22 CGGGGCCGGGGGCGGCGGCGGG
YTGGCACYNTGCCARR 16 TTGGCACCGTGCCAAG
TTTRKGTMCWTTGATATWTTATGTACASTRYATAATAWWTMTT 43 TTTGTGTCCTTTGATATTTTATGTACAGTATATAATATTTCTT
GTAGYKYAGTGGTWRW 16 GTAGCTCAGTGGTAGA
TRNCRGRRGTGGGRTTCGAACCCACGCSK 29 TGCCAGGGGTGGGATTCGAACCCACGCGT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.224 C 0.276 G 0.276 T 0.224


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
SCGCGTCTACRCGGSC MEME-1 chr19 + 36009432 36009447 2.33e-09 0.00128 GCGCGTCTACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr16 + 84504257 84504272 6.02e-09 0.00128 CCGCGTCTACACAGGC
SCGCGTCTACRCGGSC MEME-1 chr6 - 34144410 34144425 6.63e-09 0.00128 GCGCGTCTACGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr22 + 49960792 49960807 9.72e-09 0.00141 GCGCGTCTACGCGGTC
SCGCGTCTACRCGGSC MEME-1 chr12 + 111033421 111033436 2.08e-08 0.00171 GCGCGTCTACGCAGCC
SCGCGTCTACRCGGSC MEME-1 chr22 + 43862145 43862160 2.2e-08 0.00171 cggcgtctacgcggcc
SCGCGTCTACRCGGSC MEME-1 chr17 - 48610690 48610705 2.2e-08 0.00171 CGGCGTCTACGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr1 - 39672072 39672087 2.84e-08 0.00171 CCGCGTCTACGCCGCC
SCGCGTCTACRCGGSC MEME-1 chr11 + 66278031 66278046 3e-08 0.00171 CCGCGTCTACGCTGTC
SCGCGTCTACRCGGSC MEME-1 chr2 - 148876257 148876272 3.18e-08 0.00171 CCGCGTCTACACTGCC
SCGCGTCTACRCGGSC MEME-1 chr19 + 17303346 17303361 3.28e-08 0.00171 GTGCGTCTACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr2 - 238159357 238159372 3.53e-08 0.00171 CGGCGTCTACACGGCC
SCGCGTCTACRCGGSC MEME-1 chr3 - 138834334 138834349 4.7e-08 0.00197 CCGCGTCTATGCGGAC
SCGCGTCTACRCGGSC MEME-1 chr20 - 46895297 46895312 4.75e-08 0.00197 CCGCGTCTACACCGCC
SCGCGTCTACRCGGSC MEME-1 chr2 + 144516067 144516082 6.22e-08 0.0024 GAGCGTCTACGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr17 + 1486027 1486042 6.62e-08 0.0024 CCGCGTCTACACCGAC
SCGCGTCTACRCGGSC MEME-1 chr3 + 156675105 156675120 7.43e-08 0.00254 GCGCGTCTATGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr2 + 174682206 174682221 9.79e-08 0.00316 GCGCGTCTACGCCGAC
SCGCGTCTACRCGGSC MEME-1 chr8 + 22367305 22367320 1.15e-07 0.00334 GCGTGTCTACGCGGAC
SCGCGTCTACRCGGSC MEME-1 chr20 + 56925679 56925694 1.15e-07 0.00334 GCGTGTCTACGCGGAC
SCGCGTCTACRCGGSC MEME-1 chr19 - 18292307 18292322 1.66e-07 0.0046 CCGCGTCTACGCGGCA
SCGCGTCTACRCGGSC MEME-1 chr19 + 12792280 12792295 2.08e-07 0.0055 GGGCGTCTACGCCGGC
SCGCGTCTACRCGGSC MEME-1 chr9 + 96217492 96217507 2.2e-07 0.00553 CTTCGTCTACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr15 + 52179382 52179397 2.29e-07 0.00553 CCGCGCCTACACGGGC
SCGCGTCTACRCGGSC MEME-1 chr12 + 52949271 52949286 2.51e-07 0.00582 CAGCGTCTATGCAGGC
SCGCGTCTACRCGGSC MEME-1 chr16 - 22207107 22207122 2.99e-07 0.00654 GCGCGTCTATACAGTC
SCGCGTCTACRCGGSC MEME-1 chr6 + 159692904 159692919 3.04e-07 0.00654 GACCGTCTACGCAGGC
SCGCGTCTACRCGGSC MEME-1 chr1 + 38570298 38570313 3.18e-07 0.00659 AGGCGTCTACACGGAC
SCGCGTCTACRCGGSC MEME-1 chr2 + 61177117 61177132 4.01e-07 0.00782 TCGCGTCTACACTGCC
SCGCGTCTACRCGGSC MEME-1 chr1 + 236065037 236065052 4.04e-07 0.00782 CCGCGTCCACGCAGCC
SCGCGTCTACRCGGSC MEME-1 chr1 + 24294417 24294432 4.23e-07 0.00788 CACCGTCTACACAGAC
SCGCGTCTACRCGGSC MEME-1 chr10 + 93482395 93482410 4.34e-07 0.00788 CCGCGTCTACGCAGTG
SCGCGTCTACRCGGSC MEME-1 chr19 - 49158464 49158479 4.7e-07 0.00801 GAGCGTCTACACTGAC
SCGCGTCTACRCGGSC MEME-1 chr16 - 74984495 74984510 4.77e-07 0.00801 CAGCGTCTACGCGGTT
SCGCGTCTACRCGGSC MEME-1 chr1 - 25800023 25800038 5.06e-07 0.00801 TCGCGTCTATGCGGTC
SCGCGTCTACRCGGSC MEME-1 chrX - 49878927 49878942 5.13e-07 0.00801 CCTCGTCTATGCAGGC
SCGCGTCTACRCGGSC MEME-1 chrX + 134713814 134713829 5.13e-07 0.00801 GTGTGTCTACACGGCC
SCGCGTCTACRCGGSC MEME-1 chr5 + 112922281 112922296 5.24e-07 0.00801 gcgCGTCTACGCGTCC
SCGCGTCTACRCGGSC MEME-1 chr19 - 8209874 8209889 5.62e-07 0.00837 AGCCGTCTACGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr17 - 6443775 6443790 5.88e-07 0.00854 ACCCGTCTACACCGGC
SCGCGTCTACRCGGSC MEME-1 chr10 - 119206841 119206856 6.33e-07 0.00897 CGGGGTCTACGCGGAC
SCGCGTCTACRCGGSC MEME-1 chr16 - 30893783 30893798 6.49e-07 0.00898 AGGCGTCTACGCTGCC
SCGCGTCTACRCGGSC MEME-1 chr9 + 97854495 97854510 6.95e-07 0.00939 CGCCGTCTATGCAGGC
SCGCGTCTACRCGGSC MEME-1 chr17 - 79992249 79992264 7.8e-07 0.0103 ACGGGTCTACGCAGGC
SCGCGTCTACRCGGSC MEME-1 chr3 + 53347617 53347632 8.37e-07 0.0107 CCGCCTCTACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr7 + 117873290 117873305 8.5e-07 0.0107 CCGCGTCTACACTAGC
SCGCGTCTACRCGGSC MEME-1 chrX - 155264544 155264559 8.72e-07 0.0107 TCGCGTCTACGCGGGG
SCGCGTCTACRCGGSC MEME-1 chr12 + 53939175 53939190 8.88e-07 0.0107 CGCCGTCTATACGGAC
SCGCGTCTACRCGGSC MEME-1 chr18 + 48008593 48008608 9.82e-07 0.0115 CCGCGTCTACACCGCA
SCGCGTCTACRCGGSC MEME-1 chr12 - 53963528 53963543 1.03e-06 0.0115 CGGCGTCTACACGGAA
SCGCGTCTACRCGGSC MEME-1 chr22 + 42368659 42368674 1.05e-06 0.0115 CCGCGTCTACACCTGC
SCGCGTCTACRCGGSC MEME-1 chr19 - 49158416 49158431 1.12e-06 0.0115 GGGTGTCTACACAGAC
SCGCGTCTACRCGGSC MEME-1 chr3 + 15332398 15332413 1.13e-06 0.0115 CCGCGTCCATGCAGGC
SCGCGTCTACRCGGSC MEME-1 chr21 - 46635722 46635737 1.14e-06 0.0115 CCGCGTCCACACCGCC
SCGCGTCTACRCGGSC MEME-1 chr1 + 50333113 50333128 1.15e-06 0.0115 CCGCGTCCACACTGTC
SCGCGTCTACRCGGSC MEME-1 chr15 - 70492729 70492744 1.15e-06 0.0115 ACGCGTCCACGCAGGC
SCGCGTCTACRCGGSC MEME-1 chr2 + 61017697 61017712 1.21e-06 0.0115 GCTGGTCTACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr9 + 133335964 133335979 1.42e-06 0.0115 ACTCGTCTACACCGGC
SCGCGTCTACRCGGSC MEME-1 chr9 - 89605533 89605548 1.52e-06 0.0115 CCGCGTCTACACTTAC
SCGCGTCTACRCGGSC MEME-1 chr17 - 50867830 50867845 1.53e-06 0.0115 GCTGGTCTACACGGGC
SCGCGTCTACRCGGSC MEME-1 chr22 - 43089165 43089180 1.6e-06 0.0115 CAGTGTCTACGCGGCT
SCGCGTCTACRCGGSC MEME-1 chr2 - 27085784 27085799 1.66e-06 0.0115 CGGAGTCTACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr9 - 137448838 137448853 1.7e-06 0.0115 CTCTGTCTACACTGGC
SCGCGTCTACRCGGSC MEME-1 chr2 + 237456409 237456424 1.7e-06 0.0115 CTCTGTCTACACTGGC
SCGCGTCTACRCGGSC MEME-1 chr10 + 132791919 132791934 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132791954 132791969 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132791989 132792004 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792024 132792039 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792133 132792148 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792133 132792148 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792170 132792185 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792170 132792185 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792205 132792220 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792205 132792220 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792279 132792294 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792279 132792294 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792314 132792329 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792314 132792329 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792349 132792364 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792349 132792364 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792386 132792401 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792386 132792401 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792421 132792436 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792456 132792471 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792493 132792508 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792600 132792615 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792635 132792650 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792670 132792685 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792707 132792722 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792742 132792757 1.79e-06 0.0115 CAGCGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr7 + 28410941 28410956 1.81e-06 0.0116 CCCCGTCTACACCGTT
SCGCGTCTACRCGGSC MEME-1 chr3 - 137771847 137771862 1.88e-06 0.0119 TCGCGTCTATGCGGGT
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792777 132792792 2.14e-06 0.0134 CAGCGTCTACACCGGG
SCGCGTCTACRCGGSC MEME-1 chr22 + 42368752 42368767 2.23e-06 0.0138 CCGCGTCTCCACAGGC
SCGCGTCTACRCGGSC MEME-1 chr14 + 71321090 71321105 2.48e-06 0.0152 GGCCGTCTACACGGTT
SCGCGTCTACRCGGSC MEME-1 chr3 + 194138124 194138139 2.56e-06 0.0155 CCCCGTCTACACCAGC
SCGCGTCTACRCGGSC MEME-1 chr22 - 20267221 20267236 2.62e-06 0.0157 ACTTGTCTACACGGAC
SCGCGTCTACRCGGSC MEME-1 chr9 - 137448811 137448826 2.69e-06 0.016 GTCTGTCTACACTGGC
SCGCGTCTACRCGGSC MEME-1 chr12 - 54082266 54082281 2.8e-06 0.0164 CTCTGTCTATGCAGGC
SCGCGTCTACRCGGSC MEME-1 chr1 + 228486768 228486783 3.15e-06 0.0183 GCACGTCCACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr10 + 73730631 73730646 3.38e-06 0.0194 CGCCGTCTACGCAGTG
SCGCGTCTACRCGGSC MEME-1 chr15 - 66803359 66803374 3.84e-06 0.0218 GCGTGTCCATGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr15 - 101489454 101489469 4.22e-06 0.0238 CCCCGTCTACACCAAC
SCGCGTCTACRCGGSC MEME-1 chr1 - 153990949 153990964 4.31e-06 0.0241 TCCCGTCTATGCGGGT
SCGCGTCTACRCGGSC MEME-1 chr3 - 15332199 15332214 4.37e-06 0.0241 CGGTGTCTACGCGTAC
SCGCGTCTACRCGGSC MEME-1 chr1 + 224183368 224183383 4.58e-06 0.0251 GTGGGTCTACACCGAC
SCGCGTCTACRCGGSC MEME-1 chr2 + 222861071 222861086 4.69e-06 0.0254 AGTTGTCTACGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr20 - 57710174 57710189 5.12e-06 0.0275 CCGGGTCTACGTGGGC
SCGCGTCTACRCGGSC MEME-1 chr10 + 132792061 132792076 5.84e-06 0.031 CAGTGTCTACACTGGG
SCGCGTCTACRCGGSC MEME-1 chr2 - 236167842 236167857 5.87e-06 0.031 TTTCGTCTACACCGGC
SCGCGTCTACRCGGSC MEME-1 chr10 + 12068654 12068669 5.95e-06 0.0312 CTGTGTCTATGCGGTT
SCGCGTCTACRCGGSC MEME-1 chr1 - 30824463 30824478 6.04e-06 0.0313 AGCTGTCTACACCGGC
SCGCGTCTACRCGGSC MEME-1 chr5 - 38783050 38783065 6.19e-06 0.0318 TCTTGTCTACACAGTC
SCGCGTCTACRCGGSC MEME-1 chr8 - 80332112 80332127 6.23e-06 0.0318 GTATGTCTACACAGGC
SCGCGTCTACRCGGSC MEME-1 chr22 + 49961788 49961803 6.44e-06 0.0325 CACGGTCTACACCGAC
SCGCGTCTACRCGGSC MEME-1 chr17 + 49968879 49968894 6.63e-06 0.0332 CTGCGTCTCCGCAGCC
SCGCGTCTACRCGGSC MEME-1 chr1 - 108034660 108034675 6.85e-06 0.034 GACTGTCTATGCAGTC
SCGCGTCTACRCGGSC MEME-1 chr3 + 184513824 184513839 7.09e-06 0.0349 ACCAGTCTACGCGGAC
SCGCGTCTACRCGGSC MEME-1 chr11 + 119218649 119218664 7.65e-06 0.0373 caccgtctacactacc
SCGCGTCTACRCGGSC MEME-1 chr13 - 19957492 19957507 8.18e-06 0.0396 CCTCGTCTACACCTAC
SCGCGTCTACRCGGSC MEME-1 chr9 + 97854747 97854762 8.28e-06 0.0397 GGCTGCCTACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr16 + 1984037 1984052 9.48e-06 0.045 ccgcctccacacgggc
SCGCGTCTACRCGGSC MEME-1 chr10 + 8053845 8053860 9.53e-06 0.045 GTCCGTCTACACTGAG
SCGCGTCTACRCGGSC MEME-1 chr1 + 200247667 200247682 1.02e-05 0.048 CCGCGCCTATGCGGTG
SCGCGTCTACRCGGSC MEME-1 chr19 - 48638775 48638790 1.19e-05 0.0552 CTGCGTCTATATGGTC
SCGCGTCTACRCGGSC MEME-1 chr17 + 73657639 73657654 1.21e-05 0.0557 agccgtccatgcgggc
SCGCGTCTACRCGGSC MEME-1 chr1 + 236142759 236142774 1.35e-05 0.0619 CGTCGTCTACACCGTG
SCGCGTCTACRCGGSC MEME-1 chr22 + 42368694 42368709 1.42e-05 0.0638 GCAAGTCTACACGGTC
SCGCGTCTACRCGGSC MEME-1 chr15 + 71252605 71252620 1.42e-05 0.0638 TGTTGTCTACACAGTC
SCGCGTCTACRCGGSC MEME-1 chr17 - 79992286 79992301 1.51e-05 0.0675 CCTCGTCCACACAGTT
SCGCGTCTACRCGGSC MEME-1 chr17 - 81393024 81393039 1.61e-05 0.0714 CCGGGTCCACGCAGGG
SCGCGTCTACRCGGSC MEME-1 chr11 - 66278115 66278130 1.62e-05 0.0714 CTGGGTCTCCGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr19 - 2945419 2945434 1.63e-05 0.0714 CCGCGCCCACGCGGGA
SCGCGTCTACRCGGSC MEME-1 chr2 + 27086031 27086046 1.92e-05 0.0832 ACGTGTCTACGTCGGC
SCGCGTCTACRCGGSC MEME-1 chr22 - 41092018 41092033 2.01e-05 0.0863 AGGCGTCGACGCCGGC
SCGCGTCTACRCGGSC MEME-1 chr10 + 42782790 42782805 2.04e-05 0.087 CGGTGTCCATGCTGAC
SCGCGTCTACRCGGSC MEME-1 chr19 - 41884631 41884646 2.19e-05 0.0929 GCGGGTCTACACGAGA
SCGCGTCTACRCGGSC MEME-1 chr21 + 43776180 43776195 2.25e-05 0.0947 CCCCGTCCCCGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr8 - 2044370 2044385 2.4e-05 0.1 CTGCGTCTACACCACA
SCGCGTCTACRCGGSC MEME-1 chr9 + 97854735 97854750 2.6e-05 0.108 CTCCGCCTATGCGGCT
SCGCGTCTACRCGGSC MEME-1 chr9 + 105696583 105696598 2.62e-05 0.108 acaggtctatgcagtc
SCGCGTCTACRCGGSC MEME-1 chr6 - 75526667 75526682 2.64e-05 0.108 ACACGCCTATGCGGTC
SCGCGTCTACRCGGSC MEME-1 chr12 + 95473843 95473858 2.69e-05 0.109 GCCCGTCTCCACAGGT
SCGCGTCTACRCGGSC MEME-1 chr3 + 138834427 138834442 2.7e-05 0.109 CAGCGTCTCTGCCGCC
SCGCGTCTACRCGGSC MEME-1 chr14 - 104816209 104816224 2.74e-05 0.11 GCCCGTCCTCGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr7 - 33062748 33062763 2.91e-05 0.116 CGCAGTCTACGCGAGC
SCGCGTCTACRCGGSC MEME-1 chr9 - 137241455 137241470 3.03e-05 0.12 GCCCGCCCACACCGCC
SCGCGTCTACRCGGSC MEME-1 chr1 + 181127049 181127064 3.08e-05 0.121 CCCAGCCTACGCCGGC
SCGCGTCTACRCGGSC MEME-1 chr12 + 53963274 53963289 3.39e-05 0.132 CTGGGTCTACACAAGT
SCGCGTCTACRCGGSC MEME-1 chr3 - 46948178 46948193 3.56e-05 0.138 ATCTGTCTACACTGCA
SCGCGTCTACRCGGSC MEME-1 chr1 - 223846081 223846096 3.85e-05 0.148 CCCCGTCTACCCAGCC
SCGCGTCTACRCGGSC MEME-1 chr14 + 102525329 102525344 4.34e-05 0.166 aacagtctatacggac
SCGCGTCTACRCGGSC MEME-1 chr16 - 636823 636838 4.46e-05 0.169 TCTTGTCTCCGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr2 - 27086005 27086020 4.49e-05 0.169 CCCAGTCTACGCGTGT
SCGCGTCTACRCGGSC MEME-1 chr12 - 54036029 54036044 4.71e-05 0.176 ACTGGTCTATGCAGCT
SCGCGTCTACRCGGSC MEME-1 chr2 + 236167892 236167907 5.2e-05 0.194 GCGAGTCTATGCTGAA
SCGCGTCTACRCGGSC MEME-1 chr1 - 50333059 50333074 5.45e-05 0.201 CCGCGCCCACACCAGC
SCGCGTCTACRCGGSC MEME-1 chr9 + 13942939 13942954 5.79e-05 0.213 tgctgtctacactacc
SCGCGTCTACRCGGSC MEME-1 chr22 - 49960992 49961007 5.98e-05 0.218 GGTGGTCCACGCCGCC
SCGCGTCTACRCGGSC MEME-1 chr15 - 101489296 101489311 6.2e-05 0.225 GGGCGCCTCCGCAGTC
SCGCGTCTACRCGGSC MEME-1 chr1 + 228486877 228486892 6.39e-05 0.228 CCCAGCCCACGCGGGC
SCGCGTCTACRCGGSC MEME-1 chr1 + 1375267 1375282 6.42e-05 0.228 TGGCGTCCTCGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr19 - 33302207 33302222 6.51e-05 0.228 CAGCGCCTACATCGAC
SCGCGTCTACRCGGSC MEME-1 chr19 - 39407337 39407352 6.51e-05 0.228 CTCTGTCTCTACGGTC
SCGCGTCTACRCGGSC MEME-1 chr21 + 39314004 39314019 6.54e-05 0.228 GGTCCTCTACGCGGGA
SCGCGTCTACRCGGSC MEME-1 chr22 - 41092265 41092280 6.54e-05 0.228 CCGCGCCGACGCGGAG
SCGCGTCTACRCGGSC MEME-1 chr19 - 44197156 44197171 6.57e-05 0.228 GTGTGCCTACACTTGC
SCGCGTCTACRCGGSC MEME-1 chr2 - 27085910 27085925 6.82e-05 0.235 CCAGGTCGACGCAGAC
SCGCGTCTACRCGGSC MEME-1 chr2 + 61177324 61177339 6.85e-05 0.235 ccgcgtccccgcgtcc
SCGCGTCTACRCGGSC MEME-1 chr19 - 33373937 33373952 6.94e-05 0.235 CGGCGTCGCCGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr9 + 137448983 137448998 6.94e-05 0.235 GGGTGCCTACACTGTA
SCGCGTCTACRCGGSC MEME-1 chr14 - 22919464 22919479 6.97e-05 0.235 TCTAGTCTACGCGAGC
SCGCGTCTACRCGGSC MEME-1 chr1 + 228486666 228486681 7.32e-05 0.244 ATGGGTCCACGCAGGG
SCGCGTCTACRCGGSC MEME-1 chr6 - 31652671 31652686 7.35e-05 0.244 AAGTGTCCACGCATCC
SCGCGTCTACRCGGSC MEME-1 chr3 - 156674333 156674348 7.35e-05 0.244 CCGCGTCTACACGCGG
SCGCGTCTACRCGGSC MEME-1 chr9 - 85940899 85940914 7.48e-05 0.247 CCCCGTCTGCGCTGCC
SCGCGTCTACRCGGSC MEME-1 chr12 - 95473811 95473826 7.62e-05 0.25 CGGCGTCTCTGCTGGA
SCGCGTCTACRCGGSC MEME-1 chr16 + 12803755 12803770 7.71e-05 0.251 CCCCGCCTCTGCAGCC
SCGCGTCTACRCGGSC MEME-1 chr3 + 9731794 9731809 7.75e-05 0.251 cacggtctccgccgcc
SCGCGTCTACRCGGSC MEME-1 chr19 + 1940934 1940949 7.82e-05 0.252 GCGCGCCCTCGCGGCC
SCGCGTCTACRCGGSC MEME-1 chr19 - 2236431 2236446 8.05e-05 0.258 CCCCGCCCACGCCAGC
SCGCGTCTACRCGGSC MEME-1 chr20 - 63658212 63658227 8.16e-05 0.26 CCAGGCCTACACGGCG
SCGCGTCTACRCGGSC MEME-1 chr10 - 22229274 22229289 8.3e-05 0.264 CGGGGTCTTCACGGCG
SCGCGTCTACRCGGSC MEME-1 chr19 + 13731462 13731477 8.64e-05 0.271 AGGGGTCTCCACCGGC
SCGCGTCTACRCGGSC MEME-1 chr12 - 132828844 132828859 8.64e-05 0.271 CCACGTCTCCGCCGGA
SCGCGTCTACRCGGSC MEME-1 chr19 - 34255188 34255203 9.01e-05 0.28 CCCGGTCCCCGCGGAC
SCGCGTCTACRCGGSC MEME-1 chr2 + 61177316 61177331 9.01e-05 0.28 gcgcgtccccgcgtcc
SCGCGTCTACRCGGSC MEME-1 chr15 - 67521291 67521306 9.25e-05 0.286 CACGGCCTACACAGCA
SCGCGTCTACRCGGSC MEME-1 chr17 + 8125663 8125678 9.58e-05 0.294 CCTGGCCTACACCGTT
SCGCGTCTACRCGGSC MEME-1 chr16 + 3024159 3024174 9.62e-05 0.294 GGGGGTCTTCGCGGCG
SCGCGTCTACRCGGSC MEME-1 chr5 + 125227893 125227908 9.7e-05 0.295 ACCCGTCTACAAGGTC
SCGCGTCTACRCGGSC MEME-1 chr6 + 3898468 3898483 9.96e-05 0.3 TGATGTCTACACAACC
SCGCGTCTACRCGGSC MEME-1 chr16 + 74984559 74984574 9.96e-05 0.3 TTACGTCCACGCAGCT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_1 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif SCGCGTCTACRCGGSC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_1 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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