# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:28:10 PDT 2018)
#   negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN29.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:28:10 PDT 2018)
#        host: kadru
#        when: Thu May 10 19:24:26 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.224 C 0.276 G 0.276 T 0.224


MOTIF GTCTACRC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTCTACRC   GYGTAGAC         63          4   1.2e-015   4.1e-011
#         GTCTACAC   GTGTAGAC         34          0   3.6e-011   1.2e-006
#         GTCTACGC   GCGTAGAC         29          4   4.2e-006   1.4e-001

letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 4.1e-011
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.573529 0.000000 0.426471 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGTTCGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGTTCGA    TCGAACC         25          1   3.2e-007   1.1e-002
#          GGTTCGA    TCGAACC         25          1   3.2e-007   1.1e-002

letter-probability matrix: alength= 4 w= 7 nsites= 25 E= 1.1e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGAASC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGAASC     GSTTCC        103         47   6.2e-007   2.1e-002
#           GGAAGC     GCTTCC         63         28   9.0e-005   3.0e+000
#           GGAACC     GGTTCC         46         21   1.2e-003   3.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 116 E= 2.1e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.439655 0.560345 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 17.32 seconds