Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
ATTAGYAC 8 ATTAGCAC
CCTGGCY 7 CCTGGCC
AAACACA 7 AAACACA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.225 C 0.275 G 0.275 T 0.225


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CCTGGCY DREME-2 chr19 - 1811519 1811525 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 2205569 2205575 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 2720884 2720890 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 2882689 2882695 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 3158034 3158040 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr17 - 4813214 4813220 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 5097481 5097487 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 6205655 6205661 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr17 - 7019987 7019993 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 7515876 7515882 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 7515927 7515933 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr2 - 10123082 10123088 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 10836158 10836164 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 12957155 12957161 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 12957284 12957290 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 15418607 15418613 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr11 - 15827045 15827051 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 18291847 18291853 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 18292010 18292016 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 19312596 19312602 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chrX - 19888251 19888257 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr2 - 20066520 20066526 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 21935075 21935081 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr8 - 23247010 23247016 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 27343514 27343520 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 29181530 29181536 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 30407968 30407974 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr21 - 31873984 31873990 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 33177770 33177776 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 33195946 33195952 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 33392534 33392540 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 33795954 33795960 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 33797066 33797072 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr21 - 36700093 36700099 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr13 - 37000416 37000422 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr13 - 37000668 37000674 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 38196305 38196311 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 38403255 38403261 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 38735011 38735017 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 39032011 39032017 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 - 39520826 39520832 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr17 - 40140148 40140154 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 - 40652114 40652120 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 40813173 40813179 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 40813278 40813284 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 - 41446894 41446900 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 42280728 42280734 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr21 - 42879244 42879250 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr21 - 42879423 42879429 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 43340601 43340607 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr5 - 43557292 43557298 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr21 - 43864355 43864361 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 44259703 44259709 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 44327978 44327984 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr20 - 45971358 45971364 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 - 46053645 46053651 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 - 46053896 46053902 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 - 46078727 46078733 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr20 - 46089743 46089749 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 46600970 46600976 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 46788731 46788737 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr17 - 48101668 48101674 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 48373141 48373147 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 49085720 49085726 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 - 49620280 49620286 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr12 - 52903823 52903829 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr3 - 53347365 53347371 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr4 - 53943839 53943845 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 55199390 55199396 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 56404363 56404369 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr3 - 58030048 58030054 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 - 58380564 58380570 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr20 - 58651217 58651223 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr17 - 61927593 61927599 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr20 - 63956066 63956072 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr15 - 69453125 69453131 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr15 - 72117633 72117639 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr15 - 74615531 74615537 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr15 - 74615640 74615646 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr15 - 74615747 74615753 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr8 - 94719708 94719714 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr8 - 94719895 94719901 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr7 - 97872387 97872393 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr10 - 101694484 101694490 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr10 - 103907914 103907920 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr4 - 105708605 105708611 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr13 - 112079242 112079248 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr11 - 120759333 120759339 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr7 - 132256116 132256122 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr6 - 157649771 157649777 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 162562041 162562047 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr5 - 170523531 170523537 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 229221518 229221524 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 236097139 236097145 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 236097168 236097174 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 236097197 236097203 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 236097226 236097232 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 236097255 236097261 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 236097284 236097290 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 - 236097313 236097319 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr18 + 158725 158731 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr18 + 158774 158780 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 + 1271858 1271864 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 + 1271864 1271870 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 6205894 6205900 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 7515990 7515996 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr8 + 9102680 9102686 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr2 + 10123008 10123014 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 10416888 10416894 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 12984716 12984722 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr8 + 13276557 13276563 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr11 + 15827008 15827014 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr17 + 18087828 18087834 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 18291844 18291850 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 19312593 19312599 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 20411336 20411342 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 20411494 20411500 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr13 + 21176352 21176358 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr18 + 22169749 22169755 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr9 + 23825564 23825570 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 28259568 28259574 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 28830885 28830891 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr1 + 28830991 28830997 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 28885024 28885030 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 29181527 29181533 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 29715395 29715401 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 + 29994565 29994571 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr17 + 30477649 30477655 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr13 + 30617628 30617634 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr6 + 31777240 31777246 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 32692419 32692425 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr19 + 32692448 32692454 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr19 + 33195943 33195949 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 33622345 33622351 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 33795978 33795984 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 33797191 33797197 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 34677937 34677943 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 35248194 35248200 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 35248945 35248951 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 + 35257473 35257479 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr6 + 35259960 35259966 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr6 + 36680404 36680410 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 37594739 37594745 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 37654857 37654863 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr8 + 37701180 37701186 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr2 + 37873324 37873330 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 39032034 39032040 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 40218976 40218982 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr22 + 40652021 40652027 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 + 40652111 40652117 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 40692021 40692027 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 40960593 40960599 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr22 + 41446723 41446729 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 42165903 42165909 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 42166053 42166059 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 44259790 44259796 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr20 + 46255549 46255555 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr20 + 46255583 46255589 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 48390826 48390832 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 48390931 48390937 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr3 + 53347420 53347426 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr3 + 53674203 53674209 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr19 + 56404377 56404383 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr19 + 56404389 56404395 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr17 + 56834422 56834428 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr16 + 57628767 57628773 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr3 + 58335167 58335173 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr20 + 63956140 63956146 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr20 + 63956396 63956402 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chrX + 72276898 72276904 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr7 + 73726533 73726539 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr15 + 76206715 76206721 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr15 + 79091768 79091774 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr10 + 87095453 87095459 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr6 + 89352665 89352671 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr10 + 103368454 103368460 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr10 + 103907934 103907940 9.66e-05 0.303 cctggcc
CCTGGCY DREME-2 chr3 + 120349243 120349249 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr9 + 135500668 135500674 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr7 + 152464336 152464342 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 162561837 162561843 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 167173675 167173681 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr5 + 177312090 177312096 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 182391444 182391450 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 203306647 203306653 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 224357122 224357128 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr1 + 227735197 227735203 9.66e-05 0.303 CCTGGCC
CCTGGCY DREME-2 chr2 + 241102612 241102618 9.66e-05 0.303 CCTGGCC

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CCTGGCY /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


Go to top