Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
ATTAGYAC | 8 | ATTAGCAC |
CCTGGCY | 7 | CCTGGCC |
AAACACA | 7 | AAACACA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.225 C 0.275 G 0.275 T 0.225
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
CCTGGCY | DREME-2 | chr19 | - | 1811519 | 1811525 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 2205569 | 2205575 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 2720884 | 2720890 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 2882689 | 2882695 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 3158034 | 3158040 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr17 | - | 4813214 | 4813220 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 5097481 | 5097487 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 6205655 | 6205661 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr17 | - | 7019987 | 7019993 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 7515876 | 7515882 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 7515927 | 7515933 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr2 | - | 10123082 | 10123088 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 10836158 | 10836164 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 12957155 | 12957161 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 12957284 | 12957290 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 15418607 | 15418613 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr11 | - | 15827045 | 15827051 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 18291847 | 18291853 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 18292010 | 18292016 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 19312596 | 19312602 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chrX | - | 19888251 | 19888257 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr2 | - | 20066520 | 20066526 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 21935075 | 21935081 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr8 | - | 23247010 | 23247016 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 27343514 | 27343520 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 29181530 | 29181536 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 30407968 | 30407974 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr21 | - | 31873984 | 31873990 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 33177770 | 33177776 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 33195946 | 33195952 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 33392534 | 33392540 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 33795954 | 33795960 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 33797066 | 33797072 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr21 | - | 36700093 | 36700099 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr13 | - | 37000416 | 37000422 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr13 | - | 37000668 | 37000674 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 38196305 | 38196311 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 38403255 | 38403261 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 38735011 | 38735017 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 39032011 | 39032017 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | - | 39520826 | 39520832 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr17 | - | 40140148 | 40140154 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | - | 40652114 | 40652120 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 40813173 | 40813179 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 40813278 | 40813284 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | - | 41446894 | 41446900 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 42280728 | 42280734 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr21 | - | 42879244 | 42879250 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr21 | - | 42879423 | 42879429 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 43340601 | 43340607 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr5 | - | 43557292 | 43557298 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr21 | - | 43864355 | 43864361 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 44259703 | 44259709 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 44327978 | 44327984 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr20 | - | 45971358 | 45971364 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | - | 46053645 | 46053651 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | - | 46053896 | 46053902 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | - | 46078727 | 46078733 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr20 | - | 46089743 | 46089749 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 46600970 | 46600976 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 46788731 | 46788737 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr17 | - | 48101668 | 48101674 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 48373141 | 48373147 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 49085720 | 49085726 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | - | 49620280 | 49620286 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr12 | - | 52903823 | 52903829 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr3 | - | 53347365 | 53347371 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr4 | - | 53943839 | 53943845 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 55199390 | 55199396 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 56404363 | 56404369 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr3 | - | 58030048 | 58030054 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | - | 58380564 | 58380570 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr20 | - | 58651217 | 58651223 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr17 | - | 61927593 | 61927599 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr20 | - | 63956066 | 63956072 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr15 | - | 69453125 | 69453131 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr15 | - | 72117633 | 72117639 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr15 | - | 74615531 | 74615537 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr15 | - | 74615640 | 74615646 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr15 | - | 74615747 | 74615753 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr8 | - | 94719708 | 94719714 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr8 | - | 94719895 | 94719901 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr7 | - | 97872387 | 97872393 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr10 | - | 101694484 | 101694490 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr10 | - | 103907914 | 103907920 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr4 | - | 105708605 | 105708611 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr13 | - | 112079242 | 112079248 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr11 | - | 120759333 | 120759339 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr7 | - | 132256116 | 132256122 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr6 | - | 157649771 | 157649777 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 162562041 | 162562047 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr5 | - | 170523531 | 170523537 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 229221518 | 229221524 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 236097139 | 236097145 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 236097168 | 236097174 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 236097197 | 236097203 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 236097226 | 236097232 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 236097255 | 236097261 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 236097284 | 236097290 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | - | 236097313 | 236097319 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr18 | + | 158725 | 158731 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr18 | + | 158774 | 158780 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | + | 1271858 | 1271864 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | + | 1271864 | 1271870 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 6205894 | 6205900 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 7515990 | 7515996 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr8 | + | 9102680 | 9102686 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr2 | + | 10123008 | 10123014 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 10416888 | 10416894 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 12984716 | 12984722 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr8 | + | 13276557 | 13276563 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr11 | + | 15827008 | 15827014 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr17 | + | 18087828 | 18087834 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 18291844 | 18291850 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 19312593 | 19312599 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 20411336 | 20411342 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 20411494 | 20411500 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr13 | + | 21176352 | 21176358 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr18 | + | 22169749 | 22169755 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr9 | + | 23825564 | 23825570 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 28259568 | 28259574 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 28830885 | 28830891 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr1 | + | 28830991 | 28830997 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 28885024 | 28885030 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 29181527 | 29181533 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 29715395 | 29715401 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | + | 29994565 | 29994571 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr17 | + | 30477649 | 30477655 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr13 | + | 30617628 | 30617634 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr6 | + | 31777240 | 31777246 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 32692419 | 32692425 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr19 | + | 32692448 | 32692454 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr19 | + | 33195943 | 33195949 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 33622345 | 33622351 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 33795978 | 33795984 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 33797191 | 33797197 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 34677937 | 34677943 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 35248194 | 35248200 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 35248945 | 35248951 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | + | 35257473 | 35257479 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr6 | + | 35259960 | 35259966 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr6 | + | 36680404 | 36680410 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 37594739 | 37594745 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 37654857 | 37654863 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr8 | + | 37701180 | 37701186 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr2 | + | 37873324 | 37873330 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 39032034 | 39032040 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 40218976 | 40218982 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr22 | + | 40652021 | 40652027 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | + | 40652111 | 40652117 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 40692021 | 40692027 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 40960593 | 40960599 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr22 | + | 41446723 | 41446729 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 42165903 | 42165909 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 42166053 | 42166059 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 44259790 | 44259796 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr20 | + | 46255549 | 46255555 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr20 | + | 46255583 | 46255589 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 48390826 | 48390832 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 48390931 | 48390937 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr3 | + | 53347420 | 53347426 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr3 | + | 53674203 | 53674209 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr19 | + | 56404377 | 56404383 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr19 | + | 56404389 | 56404395 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr17 | + | 56834422 | 56834428 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr16 | + | 57628767 | 57628773 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr3 | + | 58335167 | 58335173 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr20 | + | 63956140 | 63956146 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr20 | + | 63956396 | 63956402 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chrX | + | 72276898 | 72276904 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr7 | + | 73726533 | 73726539 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr15 | + | 76206715 | 76206721 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr15 | + | 79091768 | 79091774 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr10 | + | 87095453 | 87095459 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr6 | + | 89352665 | 89352671 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr10 | + | 103368454 | 103368460 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr10 | + | 103907934 | 103907940 | 9.66e-05 | 0.303 | cctggcc |
CCTGGCY | DREME-2 | chr3 | + | 120349243 | 120349249 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr9 | + | 135500668 | 135500674 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr7 | + | 152464336 | 152464342 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 162561837 | 162561843 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 167173675 | 167173681 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr5 | + | 177312090 | 177312096 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 182391444 | 182391450 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 203306647 | 203306653 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 224357122 | 224357128 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr1 | + | 227735197 | 227735203 | 9.66e-05 | 0.303 | CCTGGCC |
CCTGGCY | DREME-2 | chr2 | + | 241102612 | 241102618 | 9.66e-05 | 0.303 | CCTGGCC |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CCTGGCY /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.