# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 17:00:13 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 17:00:14 PST 2017) # host: kali # when: Mon Dec 18 17:21:48 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.251 C 0.249 G 0.249 T 0.251 MOTIF TGAGTCAB DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TGAGTCAB VTGACTCA 63 5 8.8e-015 2.9e-010 # TGAGTCAG CTGACTCA 23 1 1.2e-006 4.1e-002 # TGAGTCAC GTGACTCA 22 2 1.5e-005 5.1e-001 # TGAGTCAT ATGACTCA 22 3 6.8e-005 2.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 2.9e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.309524 0.369048 0.321429 MOTIF HATAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST HATAAA TTTATD 154 72 8.0e-010 2.6e-005 # CATAAA TTTATG 76 28 4.8e-007 1.6e-002 # TATAAA TTTATA 39 14 3.1e-004 1.0e+001 # AATAAA TTTATT 63 37 4.4e-003 1.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 203 E= 2.6e-005 0.359606 0.443350 0.000000 0.197044 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGACHTCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TGACHTCA TGADGTCA 54 9 1.3e-009 4.1e-005 # TGACCTCA TGAGGTCA 22 3 6.8e-005 2.2e+000 # TGACATCA TGATGTCA 25 6 3.8e-004 1.2e+001 # TGACTTCA TGAAGTCA 11 0 4.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 4.1e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.333333 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGATAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGATAA TTATCT 64 17 2.7e-008 8.7e-004 # AGATAA TTATCT 64 17 2.7e-008 8.7e-004 letter-probability matrix: alength= 4 w= 6 nsites= 68 E= 8.7e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GSCGGAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GSCGGAA TTCCGSC 31 2 4.6e-008 1.5e-003 # GCCGGAA TTCCGGC 14 0 5.7e-005 1.8e+000 # GGCGGAA TTCCGCC 18 2 1.8e-004 5.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 32 E= 1.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.437500 0.562500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATTACA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATTACA TGTAAT 65 19 9.3e-008 3.0e-003 # ATTACA TGTAAT 65 19 9.3e-008 3.0e-003 letter-probability matrix: alength= 4 w= 6 nsites= 73 E= 3.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAGTGCY DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AAGTGCY RGCACTT 48 10 1.2e-007 3.9e-003 # AAGTGCT AGCACTT 32 7 2.7e-005 8.6e-001 # AAGTGCC GGCACTT 16 3 2.1e-003 6.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 48 E= 3.9e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 # Stopping reason: E-value threshold exceeded # Running time: 41.57 seconds