Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GGGATTA 7 GGGATTA
AGSCWGG 7 AGGCTGG
TCYCAAA 7 TCTCAAA
GACTCAK 7 GACTCAT
AAAAATAC 8 AAAAATAC
ACCTC 5 ACCTC
CRGGAGGC 8 CGGGAGGC
AGTAGAG 7 AGTAGAG
CTTGAACC 8 CTTGAACC
TGCAGTGR 8 TGCAGTGA
GGTGRC 6 GGTGGC
AAATAAAT 8 AAATAAAT
GTTTGTK 7 GTTTGTG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.268 C 0.232 G 0.232 T 0.268


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
TCYCAAA DREME-3 chr1_KI270713v1_random - 20878 20884 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr16 - 402189 402195 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 1203072 1203078 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chrX - 1393456 1393462 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 1413646 1413652 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 1443091 1443097 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 1647154 1647160 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 2626892 2626898 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 3971724 3971730 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 3972029 3972035 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 3972336 3972342 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 7016111 7016117 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 11533274 11533280 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr16 - 12062173 12062179 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chrX - 13692097 13692103 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr16 - 15673228 15673234 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr5 - 17145502 17145508 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chrX - 17413173 17413179 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 22054182 22054188 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 22054206 22054212 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr16 - 22202089 22202095 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 22837767 22837773 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 22838073 22838079 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chrX - 24144214 24144220 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 - 27134628 27134634 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 28235354 28235360 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 - 28597176 28597182 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 - 28607098 28607104 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 - 28895841 28895847 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr16 - 30570767 30570773 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr5 - 32157772 32157778 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr21 - 33442141 33442147 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 34185175 34185181 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr20 - 34390774 34390780 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 35386172 35386178 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 35701877 35701883 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 35905607 35905613 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr21 - 36123008 36123014 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr21 - 36319441 36319447 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr22 - 36452186 36452192 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr21 - 37275042 37275048 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr8 - 37793083 37793089 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr8 - 37793124 37793130 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 - 42674555 42674561 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 - 43322161 43322167 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 43655935 43655941 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 43656047 43656053 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 - 43709421 43709427 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr21 - 43717739 43717745 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 45832015 45832021 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr20 - 46085207 46085213 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 46102264 46102270 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 46213315 46213321 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr21 - 46320115 46320121 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr20 - 46368717 46368723 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr3 - 48557550 48557556 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr20 - 48920913 48920919 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr18 - 49515227 49515233 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 49569729 49569735 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 50459255 50459261 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 51703523 51703529 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr20 - 51960852 51960858 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 57245387 57245393 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 57458120 57458126 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 58780433 58780439 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr18 - 59908068 59908074 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr20 - 62794927 62794933 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 64408124 64408130 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 65513228 65513234 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 65531579 65531585 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr5 - 65555490 65555496 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr11 - 67122690 67122696 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 67364243 67364249 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 69128262 69128268 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 75217795 75217801 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 75217975 75217981 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 75635436 75635442 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 - 77563023 77563029 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr10 - 87664557 87664563 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 - 90182640 90182646 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr13 - 98581032 98581038 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr10 - 100044725 100044731 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr10 - 101275580 101275586 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr7 - 108403757 108403763 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr10 - 113077715 113077721 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 120196072 120196078 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 - 124922554 124922560 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr9 - 129802568 129802574 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 - 134109515 134109521 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr7 - 149144602 149144608 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 210236432 210236438 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 229219024 229219030 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 235129457 235129463 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 236468647 236468653 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 - 244838804 244838810 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 + 1115298 1115304 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 + 1203273 1203279 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chrX + 1246241 1246247 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 1647395 1647401 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chrX + 1800353 1800359 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chrX + 2418076 2418082 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr16 + 2537012 2537018 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr16 + 2537306 2537312 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr16 + 2916335 2916341 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 3971623 3971629 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 + 3972566 3972572 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 4183904 4183910 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr16 + 12062372 12062378 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 17108928 17108934 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr10 + 17220219 17220225 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr16 + 21515171 21515177 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 22054218 22054224 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr18 + 23660106 23660112 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chrX + 24143934 24143940 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr22 + 25017378 25017384 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr21 + 26799309 26799315 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 + 27231544 27231550 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 28373641 28373647 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 28517117 28517123 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr6 + 28898644 28898650 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr21 + 29221482 29221488 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 + 30368240 30368246 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr22 + 30592792 30592798 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr6 + 30617130 30617136 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 + 30707829 30707835 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr1 + 30799758 30799764 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr12 + 31763209 31763215 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr6 + 31863481 31863487 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr5 + 32157973 32157979 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr5 + 32158086 32158092 7.45e-05 0.223 TCTCAaa
TCYCAAA DREME-3 chr21 + 33445782 33445788 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr21 + 33445869 33445875 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 + 34218452 34218458 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 + 34232405 34232411 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr14 + 34460934 34460940 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr14 + 34460994 34461000 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 + 34474697 34474703 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 35905948 35905954 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr21 + 36123183 36123189 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr22 + 36452386 36452392 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 37466626 37466632 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr21 + 38349644 38349650 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 + 38667234 38667240 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 38730848 38730854 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr19 + 39033472 39033478 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 39165510 39165516 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 39438525 39438531 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 39438555 39438561 7.45e-05 0.223 TCTCAaa
TCYCAAA DREME-3 chr19 + 40567292 40567298 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr22 + 41672216 41672222 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr22 + 41672605 41672611 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr21 + 42149263 42149269 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr6 + 43322000 43322006 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 43709684 43709690 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr21 + 43857591 43857597 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 45066935 45066941 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 45329813 45329819 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr17 + 45832231 45832237 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr20 + 46085111 46085117 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 46145944 46145950 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr20 + 46368754 46368760 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr12 + 49125402 49125408 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr19 + 50134528 50134534 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 50694125 50694131 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr20 + 51961045 51961051 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 52945698 52945704 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr11 + 65508190 65508196 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr5 + 66733674 66733680 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 67699179 67699185 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr3 + 71982901 71982907 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr10 + 73587470 73587476 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr15 + 73631915 73631921 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 + 73632032 73632038 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr15 + 74528417 74528423 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 76853904 76853910 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr17 + 81584245 81584251 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr6 + 90222895 90222901 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr13 + 98584092 98584098 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr7 + 99376057 99376063 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr10 + 100044591 100044597 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr10 + 101275483 101275489 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr13 + 112213612 112213618 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr10 + 114525526 114525532 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr10 + 114727045 114727051 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr5 + 116546477 116546483 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr12 + 120196061 120196067 7.45e-05 0.223 tctCAAA
TCYCAAA DREME-3 chr2 + 128228020 128228026 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr2 + 158232450 158232456 7.45e-05 0.223 TCTCAAA
TCYCAAA DREME-3 chr4 + 190112101 190112107 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 205266236 205266242 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 223719534 223719540 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 233244706 233244712 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 235129657 235129663 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 235862791 235862797 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 236468615 236468621 7.45e-05 0.223 tctcaaa
TCYCAAA DREME-3 chr1 + 241131194 241131200 7.45e-05 0.223 TCTCAAA

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_8 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif TCYCAAA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_8 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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