Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GGGATTA | 7 | GGGATTA |
AGSCWGG | 7 | AGGCTGG |
TCYCAAA | 7 | TCTCAAA |
GACTCAK | 7 | GACTCAT |
AAAAATAC | 8 | AAAAATAC |
ACCTC | 5 | ACCTC |
CRGGAGGC | 8 | CGGGAGGC |
AGTAGAG | 7 | AGTAGAG |
CTTGAACC | 8 | CTTGAACC |
TGCAGTGR | 8 | TGCAGTGA |
GGTGRC | 6 | GGTGGC |
AAATAAAT | 8 | AAATAAAT |
GTTTGTK | 7 | GTTTGTG |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.268 C 0.232 G 0.232 T 0.268
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
GACTCAK | DREME-4 | chr19 | - | 434323 | 434329 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr19 | - | 434379 | 434385 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr19 | - | 434439 | 434445 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr16 | - | 2664865 | 2664871 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr19 | - | 4183939 | 4183945 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr10 | - | 4781010 | 4781016 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr16 | - | 10739005 | 10739011 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr17 | - | 13421066 | 13421072 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr16 | - | 15590993 | 15590999 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chrX | - | 17413442 | 17413448 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr16 | - | 22202006 | 22202012 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr1 | - | 28373705 | 28373711 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr19 | - | 28401351 | 28401357 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr6 | - | 29628419 | 29628425 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr6 | - | 31863179 | 31863185 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr17 | - | 33983016 | 33983022 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr21 | - | 35593159 | 35593165 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr8 | - | 37793389 | 37793395 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr13 | - | 39148639 | 39148645 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr17 | - | 39486545 | 39486551 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr6 | - | 43322124 | 43322130 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr21 | - | 45208848 | 45208854 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr17 | - | 45321083 | 45321089 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr17 | - | 45832226 | 45832232 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr20 | - | 46085306 | 46085312 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr17 | - | 46279920 | 46279926 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr18 | - | 50836807 | 50836813 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr18 | - | 50870392 | 50870398 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr16 | - | 54927453 | 54927459 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr8 | - | 72675831 | 72675837 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr10 | - | 100044655 | 100044661 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr7 | - | 101169221 | 101169227 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr9 | - | 109118048 | 109118054 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr10 | - | 120969542 | 120969548 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr3 | - | 127890554 | 127890560 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr10 | - | 129440525 | 129440531 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr2 | - | 138072412 | 138072418 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr7 | - | 149719235 | 149719241 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr7 | - | 158109730 | 158109736 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr1 | - | 241131179 | 241131185 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chrX | + | 1212693 | 1212699 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr12 | + | 12398563 | 12398569 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr5 | + | 17315833 | 17315839 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr4 | + | 20272573 | 20272579 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr4 | + | 20272799 | 20272805 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr6 | + | 27633376 | 27633382 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr8 | + | 28625183 | 28625189 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr21 | + | 29217876 | 29217882 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr6 | + | 29845471 | 29845477 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 29845499 | 29845505 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 29845527 | 29845533 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 29845555 | 29845561 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 29845611 | 29845617 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 29845639 | 29845645 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr8 | + | 30254865 | 30254871 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr12 | + | 31763256 | 31763262 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr6 | + | 32969992 | 32969998 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr19 | + | 35905543 | 35905549 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr17 | + | 37567433 | 37567439 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr19 | + | 39033203 | 39033209 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 42674494 | 42674500 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr21 | + | 43857627 | 43857633 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr20 | + | 46368510 | 46368516 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr12 | + | 49125139 | 49125145 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr1 | + | 52945432 | 52945438 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr2 | + | 62201615 | 62201621 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr13 | + | 62643017 | 62643023 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643051 | 62643057 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643079 | 62643085 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643096 | 62643102 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643124 | 62643130 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643141 | 62643147 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643169 | 62643175 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643186 | 62643192 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 62643214 | 62643220 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr12 | + | 63419251 | 63419257 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr12 | + | 63419279 | 63419285 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr12 | + | 63419307 | 63419313 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr12 | + | 63419335 | 63419341 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr12 | + | 63419369 | 63419375 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr10 | + | 70378373 | 70378379 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr5 | + | 71601857 | 71601863 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr3 | + | 71982844 | 71982850 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr17 | + | 76854109 | 76854115 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr11 | + | 93986845 | 93986851 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr13 | + | 98583818 | 98583824 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr10 | + | 101275516 | 101275522 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr9 | + | 108477599 | 108477605 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr13 | + | 110965384 | 110965390 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 110965401 | 110965407 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 110965429 | 110965435 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 110965446 | 110965452 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 110965474 | 110965480 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 110965491 | 110965497 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 110965519 | 110965525 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr13 | + | 110965536 | 110965542 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr10 | + | 112959388 | 112959394 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr7 | + | 116543955 | 116543961 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr3 | + | 127890699 | 127890705 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr3 | + | 127890727 | 127890733 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr3 | + | 127890755 | 127890761 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr3 | + | 127890783 | 127890789 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 129183888 | 129183894 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr10 | + | 129440520 | 129440526 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 133248944 | 133248950 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr7 | + | 133492276 | 133492282 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr6 | + | 141326671 | 141326677 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr7 | + | 150360269 | 150360275 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr3 | + | 156626298 | 156626304 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr2 | + | 158232703 | 158232709 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr3 | + | 169009244 | 169009250 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr1 | + | 205266321 | 205266327 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr1 | + | 229224635 | 229224641 | 6.44e-05 | 0.332 | GACTCAT |
GACTCAK | DREME-4 | chr1 | + | 233244440 | 233244446 | 6.44e-05 | 0.332 | gactcat |
GACTCAK | DREME-4 | chr1 | + | 236468354 | 236468360 | 6.44e-05 | 0.332 | gactcat |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_10 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif GACTCAK /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_10 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.