******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:48716969-48717469 1.0000 100 chr1:151494658-151495158 1.0000 100 chr12:42569472-42569972 1.0000 100 chr6:8939580-8940080 1.0000 100 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chr8:37360435-37360935 1.0000 100 chr10:94673532-94674032 1.0000 100 chr1:12478166-12478666 1.0000 100 chr19:36916396-36916896 1.0000 100 chr12:25333747-25334247 1.0000 100 chr1:44213196-44213696 1.0000 100 chr10:22552790-22553290 1.0000 100 chr1:63523026-63523526 1.0000 100 chr16:12120395-12120895 1.0000 100 chr6:24774920-24775420 1.0000 100 chrX:73943993-73944493 1.0000 100 chr19:39411907-39412407 1.0000 100 chr15:70526426-70526926 1.0000 100 chr1:37989854-37990354 1.0000 100 chr5:57042470-57042970 1.0000 100 chr16:30698044-30698544 1.0000 100 chr14:74140268-74140768 1.0000 100 chr17:74514279-74514779 1.0000 100 chr15:68277399-68277899 1.0000 100 chr21:43728466-43728966 1.0000 100 chr7:74079379-74079879 1.0000 100 chr1:229221384-229221884 1.0000 100 chr16:4944703-4945203 1.0000 100 chr7:80876831-80877331 1.0000 100 chr5:124740953-124741453 1.0000 100 chr19:40806679-40807179 1.0000 100 chr19:36604686-36605186 1.0000 100 chr3:181328955-181329455 1.0000 100 chr17:51153373-51153873 1.0000 100 chr20:45972069-45972569 1.0000 100 chr14:76486254-76486754 1.0000 100 chr17:7836699-7837199 1.0000 100 chr10:50463956-50464456 1.0000 100 chr1:28648516-28649016 1.0000 100 chr10:72204286-72204786 1.0000 100 chr1:205122042-205122542 1.0000 100 chr8:37479301-37479801 1.0000 100 chr20:48921200-48921700 1.0000 100 chr1:212596164-212596664 1.0000 100 chr10:101442016-10144251 1.0000 100 chr19:35947340-35947840 1.0000 100 chr22:20496057-20496557 1.0000 100 chr7:116218118-116218618 1.0000 100 chr1:234700142-234700642 1.0000 100 chr10:63707258-63707758 1.0000 100 chr9:18976658-18977158 1.0000 100 chr20:37095810-37096310 1.0000 100 chr14:99821631-99822131 1.0000 100 chr12:124914560-12491506 1.0000 100 chr5:175378442-175378942 1.0000 100 chr15:72375761-72376261 1.0000 100 chr17:74514075-74514575 1.0000 100 chr10:77350576-77351076 1.0000 100 chr1:25998124-25998624 1.0000 100 chr14:22982600-22983100 1.0000 100 chr8:37302631-37303131 1.0000 100 chr17:45148398-45148898 1.0000 100 chr16:25049523-25050023 1.0000 100 chr1:86774468-86774968 1.0000 100 chr19:1383510-1384010 1.0000 100 chr12:57111962-57112462 1.0000 100 chr9:85743210-85743710 1.0000 100 chr15:74546102-74546602 1.0000 100 chr1:81126917-81127417 1.0000 100 chr1:183471805-183472305 1.0000 100 chr17:34981747-34982247 1.0000 100 chr14:36835069-36835569 1.0000 100 chr20:58650932-58651432 1.0000 100 chr10:87845971-87846471 1.0000 100 chr19:1021419-1021919 1.0000 100 chr10:75379163-75379663 1.0000 100 chr15:65610910-65611410 1.0000 100 chr15:67792449-67792949 1.0000 100 chr15:70494068-70494568 1.0000 100 chr1:228781606-228782106 1.0000 100 chr1:93078907-93079407 1.0000 100 chr6:82260149-82260649 1.0000 100 chr19:40920911-40921411 1.0000 100 chrX:53225063-53225563 1.0000 100 chr21:39313509-39314009 1.0000 100 chr4:128393157-128393657 1.0000 100 chr14:54343575-54344075 1.0000 100 chr1:234723978-234724478 1.0000 100 chr17:78558303-78558803 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.239 C 0.261 G 0.261 T 0.239 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.235 C 0.265 G 0.265 T 0.235 ******************************************************************************** ******************************************************************************** MOTIF CACACACACACACACACACACACACACACAC MEME-1 width = 31 sites = 39 llr = 1025 E-value = 4.8e-225 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACACACACACACACACACACACACAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :7:718:8:8171818:9:9:9:8:9:8271 pos.-specific C 91918:9:919:9181819:81a:9:91738 probability G :2:111111::111:::::1:1:11::11:1 matrix T 11:1:1:2::11:1111::12::1:::1::1 bits 2.1 1.9 * 1.7 * * ** 1.5 * * *** ** *** Relative 1.3 * * ** *** * **** ******* Entropy 1.0 * * ****** * ************* (37.9 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CACACACACACACACACACACACACACACAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACACACACACACACACACAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr12:57111962-57112462 + 62 2.18e-19 cacaacacca cacacacacacacacacacacacacacacac acacacac chr19:35947340-35947840 - 58 2.18e-19 CACACACACA CACACACACACACACACACACACACACACAC GAACAGTGCC chr17:40140159-40140659 + 16 2.18e-19 cacaccccaa cacacacacacacacacacacacacacacac acacacacac chr19:35819799-35820299 + 60 2.18e-19 acccaatgta cacacacacacacacacacacacacacacac acacacacac chr1:28884781-28885281 + 53 2.18e-19 CCCTGGCCAa cacacacacacacacacacacacacacacac acacacacac chr1:100351732-100352232 - 42 2.18e-19 CGCGCGCGCG CACACACACACACACACACACACACACACAC TCGTAAAAAC chr21:35047270-35047770 + 46 2.18e-19 ccatctccaa cacacacacacacacacacacacacacacac acacacacac chr19:36837853-36838353 + 56 8.49e-19 CGTGCGCGca cacacacacacacacacacatacacacacac acacacaAGC chr19:53979811-53980311 - 47 1.31e-18 CGCGCGCGCG CGCACACACACACACACACACACACACACAC GTGCGCGCCC chr5:93582518-93583018 - 54 2.19e-18 CGTCTATGGT CACACACACACACACATACACACACACACAC TTACGCTCAC chr3:69250030-69250530 - 53 5.71e-18 AATAGACACA CACACACACACACACACACACACGCACACAC AGTGGTTTCG chr6:43702489-43702989 - 35 5.71e-18 GGGACACACA CACAAACACACACACACACACACACACACAC AAACACACAC chr8:16825874-16826374 + 6 1.76e-16 gcaca cacacacacacagacatacacacacacacac aTTAAAAACC chr1:21345613-21346113 - 69 2.04e-16 A CACACACACACACACACACACACACACAAGC AGCTGCAGCG chr17:56592666-56593166 - 56 3.38e-16 CACACATATA TACACACACACACACACACACACACACAGCC CCTACCCCAC chr10:101442016-10144251 - 70 6.56e-16 . CACACACACACACACACACATACACACAGAG ACAGAGAGAG chr20:52972213-52972713 - 8 2.20e-15 CCCCCACATA TGCACACACACACAAACACACACACACACCC TCGCACA chr9:135967582-135968082 - 2 2.20e-15 GGCGCGCGCG CGCGCGCACACACACACACACACACACACAC G chr17:73310466-73310966 + 70 2.42e-14 GAGCACCCCT CCCCCAGTcacacacacacacacacacacac chr1:156660146-156660646 - 46 5.66e-14 CATGCGCGTA CACACACGCACGCGTACACACACACACACAC ACAGGCACAC chr19:36916396-36916896 - 41 3.83e-13 TTCGTGCCGT CACACTCACACACACAACCACACACCCACAC TAACTCCCAT chr20:53611361-53611861 + 17 2.24e-12 AGGAACCATT TAAAAacacacacacacacacacacaccacC TCTGGCCTCT chr10:96580036-96580536 - 26 2.45e-12 CAGAGCAAGA CTCCGTCTCACACACACACACACACACAAAG ATGAAGCAGA chr1:228781606-228782106 - 17 5.88e-12 CACATCGTAC CACACACGTGCGCACACACACACACACAACC CTATGTAAAA chr1:150235752-150236252 + 67 8.28e-12 cactagcgcg cgcacacacacgcacgcacgcgcgcacacac ata chr1:228782568-228783068 - 62 1.26e-11 CTACACAC CACACACACATGCACCCACATGCACACAACA CATACACATC chr1:109099999-109100499 - 69 7.34e-11 T CACACACTCACGCGTCCACTCACACTCACCC TGCACGCGCC chr12:56079857-56080357 + 34 3.50e-10 tcctccctcc ctctctctctctctctcacacacacacaccc ctcccctgcc chr21:45591106-45591606 + 61 8.70e-10 cacaacactc cacatagacacacacatagatacacaccact ccacataag chr19:36604686-36605186 + 43 9.32e-10 ATCACAGGCG CGCCcactcacaccaccacacacggacgcag ccacagaacg chr1:40691641-40692141 - 27 1.14e-09 CCCTATCACC CTCGCACAGAAACTCCCGCACACTCACACAC CTCTGCTCAG chr11:9759554-9760054 + 70 1.22e-09 TGCTCATGCC TGCACTCAGACACATATCCACACAGATACCC chr16:12120395-12120895 - 68 3.08e-09 TC CCCAGGGACCCAAACATAAACACAGACACAC AGCCAGATGA chr1:31387504-31388004 + 58 5.45e-09 CAGATGACCT CACCCACACCCCGAGACACATCCACACGGAC GACCTCACCC chr8:10653175-10653675 + 70 1.01e-08 CCAAAACACC AGGTGTCTCCCTCCAacacacacacacacac chr19:37594918-37595418 - 70 1.63e-08 . CACGCACACACACACACATGGCCGCAAAGAA TGCGTCACAC chr21:38913546-38914046 + 65 1.83e-08 caacagacaa cacaaacaacatacaacacatacacacaaca cacac chr16:1308232-1308732 - 25 2.90e-08 CATTCATTCC CACTCACTCATTCCCTCCCTCACTCACTCAT TCCCTCCCTC chr1:40257837-40258337 - 44 4.81e-08 CTGGCAGTGT CACAGACACACTCTTCCCCTTGCAGACTCTC CCTAGTCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACACACACACACACACACAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57111962-57112462 2.2e-19 61_[+1]_8 chr19:35947340-35947840 2.2e-19 57_[-1]_12 chr17:40140159-40140659 2.2e-19 15_[+1]_54 chr19:35819799-35820299 2.2e-19 59_[+1]_10 chr1:28884781-28885281 2.2e-19 52_[+1]_17 chr1:100351732-100352232 2.2e-19 41_[-1]_28 chr21:35047270-35047770 2.2e-19 45_[+1]_24 chr19:36837853-36838353 8.5e-19 55_[+1]_14 chr19:53979811-53980311 1.3e-18 46_[-1]_23 chr5:93582518-93583018 2.2e-18 53_[-1]_16 chr3:69250030-69250530 5.7e-18 52_[-1]_17 chr6:43702489-43702989 5.7e-18 34_[-1]_35 chr8:16825874-16826374 1.8e-16 5_[+1]_64 chr1:21345613-21346113 2e-16 68_[-1]_1 chr17:56592666-56593166 3.4e-16 55_[-1]_14 chr10:101442016-10144251 6.6e-16 69_[-1] chr20:52972213-52972713 2.2e-15 7_[-1]_62 chr9:135967582-135968082 2.2e-15 1_[-1]_68 chr17:73310466-73310966 2.4e-14 69_[+1] chr1:156660146-156660646 5.7e-14 45_[-1]_24 chr19:36916396-36916896 3.8e-13 40_[-1]_29 chr20:53611361-53611861 2.2e-12 16_[+1]_53 chr10:96580036-96580536 2.4e-12 25_[-1]_44 chr1:228781606-228782106 5.9e-12 16_[-1]_53 chr1:150235752-150236252 8.3e-12 66_[+1]_3 chr1:228782568-228783068 1.3e-11 61_[-1]_8 chr1:109099999-109100499 7.3e-11 68_[-1]_1 chr12:56079857-56080357 3.5e-10 33_[+1]_36 chr21:45591106-45591606 8.7e-10 60_[+1]_9 chr19:36604686-36605186 9.3e-10 42_[+1]_27 chr1:40691641-40692141 1.1e-09 26_[-1]_43 chr11:9759554-9760054 1.2e-09 69_[+1] chr16:12120395-12120895 3.1e-09 67_[-1]_2 chr1:31387504-31388004 5.5e-09 57_[+1]_12 chr8:10653175-10653675 1e-08 69_[+1] chr19:37594918-37595418 1.6e-08 69_[-1] chr21:38913546-38914046 1.8e-08 64_[+1]_5 chr16:1308232-1308732 2.9e-08 24_[-1]_45 chr1:40257837-40258337 4.8e-08 43_[-1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACACACACACACACACACAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACACACACACACACACACACACACAC width=31 seqs=39 chr12:57111962-57112462 ( 62) CACACACACACACACACACACACACACACAC 1 chr19:35947340-35947840 ( 58) CACACACACACACACACACACACACACACAC 1 chr17:40140159-40140659 ( 16) CACACACACACACACACACACACACACACAC 1 chr19:35819799-35820299 ( 60) CACACACACACACACACACACACACACACAC 1 chr1:28884781-28885281 ( 53) CACACACACACACACACACACACACACACAC 1 chr1:100351732-100352232 ( 42) CACACACACACACACACACACACACACACAC 1 chr21:35047270-35047770 ( 46) CACACACACACACACACACACACACACACAC 1 chr19:36837853-36838353 ( 56) CACACACACACACACACACATACACACACAC 1 chr19:53979811-53980311 ( 47) CGCACACACACACACACACACACACACACAC 1 chr5:93582518-93583018 ( 54) CACACACACACACACATACACACACACACAC 1 chr3:69250030-69250530 ( 53) CACACACACACACACACACACACGCACACAC 1 chr6:43702489-43702989 ( 35) CACAAACACACACACACACACACACACACAC 1 chr8:16825874-16826374 ( 6) CACACACACACAGACATACACACACACACAC 1 chr1:21345613-21346113 ( 69) CACACACACACACACACACACACACACAAGC 1 chr17:56592666-56593166 ( 56) TACACACACACACACACACACACACACAGCC 1 chr10:101442016-10144251 ( 70) CACACACACACACACACACATACACACAGAG 1 chr20:52972213-52972713 ( 8) TGCACACACACACAAACACACACACACACCC 1 chr9:135967582-135968082 ( 2) CGCGCGCACACACACACACACACACACACAC 1 chr17:73310466-73310966 ( 70) CCCCCAGTCACACACACACACACACACACAC 1 chr1:156660146-156660646 ( 46) CACACACGCACGCGTACACACACACACACAC 1 chr19:36916396-36916896 ( 41) CACACTCACACACACAACCACACACCCACAC 1 chr20:53611361-53611861 ( 17) TAAAAACACACACACACACACACACACCACC 1 chr10:96580036-96580536 ( 26) CTCCGTCTCACACACACACACACACACAAAG 1 chr1:228781606-228782106 ( 17) CACACACGTGCGCACACACACACACACAACC 1 chr1:150235752-150236252 ( 67) CGCACACACACGCACGCACGCGCGCACACAC 1 chr1:228782568-228783068 ( 62) CACACACACATGCACCCACATGCACACAACA 1 chr1:109099999-109100499 ( 69) CACACACTCACGCGTCCACTCACACTCACCC 1 chr12:56079857-56080357 ( 34) CTCTCTCTCTCTCTCTCACACACACACACCC 1 chr21:45591106-45591606 ( 61) CACATAGACACACACATAGATACACACCACT 1 chr19:36604686-36605186 ( 43) CGCCCACTCACACCACCACACACGGACGCAG 1 chr1:40691641-40692141 ( 27) CTCGCACAGAAACTCCCGCACACTCACACAC 1 chr11:9759554-9760054 ( 70) TGCACTCAGACACATATCCACACAGATACCC 1 chr16:12120395-12120895 ( 68) CCCAGGGACCCAAACATAAACACAGACACAC 1 chr1:31387504-31388004 ( 58) CACCCACACCCCGAGACACATCCACACGGAC 1 chr8:10653175-10653675 ( 70) AGGTGTCTCCCTCCAACACACACACACACAC 1 chr19:37594918-37595418 ( 70) CACGCACACACACACACATGGCCGCAAAGAA 1 chr21:38913546-38914046 ( 65) CACAAACAACATACAACACATACACACAACA 1 chr16:1308232-1308732 ( 25) CACTCACTCATTCCCTCCCTCACTCACTCAT 1 chr1:40257837-40258337 ( 44) CACAGACACACTCTTCCCCTTGCAGACTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACACACACACACACACACAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 9.47343 E= 4.8e-225 -319 172 -1193 -119 156 -237 -56 -161 -319 184 -337 -1193 166 -137 -178 -161 -161 158 -137 -319 180 -1193 -237 -87 -1193 180 -178 -1193 171 -1193 -237 -39 -319 176 -237 -319 185 -137 -337 -319 -219 176 -1193 -219 161 -337 -105 -87 -219 176 -237 -1193 171 -137 -237 -161 -119 154 -337 -119 176 -105 -337 -219 -319 167 -1193 -87 189 -137 -337 -1193 -319 180 -337 -319 189 -1193 -237 -161 -1193 158 -337 -39 189 -237 -178 -1193 -1193 191 -1193 -1193 185 -1193 -137 -219 -1193 176 -137 -1193 201 -337 -1193 -319 -319 184 -1193 -319 185 -237 -237 -219 -39 144 -137 -1193 156 -5 -337 -319 -161 158 -178 -219 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACACACACACACACACACAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 39 E= 4.8e-225 0.025641 0.871795 0.000000 0.102564 0.692308 0.051282 0.179487 0.076923 0.025641 0.948718 0.025641 0.000000 0.743590 0.102564 0.076923 0.076923 0.076923 0.794872 0.102564 0.025641 0.820513 0.000000 0.051282 0.128205 0.000000 0.923077 0.076923 0.000000 0.769231 0.000000 0.051282 0.179487 0.025641 0.897436 0.051282 0.025641 0.846154 0.102564 0.025641 0.025641 0.051282 0.897436 0.000000 0.051282 0.717949 0.025641 0.128205 0.128205 0.051282 0.897436 0.051282 0.000000 0.769231 0.102564 0.051282 0.076923 0.102564 0.769231 0.025641 0.102564 0.794872 0.128205 0.025641 0.051282 0.025641 0.846154 0.000000 0.128205 0.871795 0.102564 0.025641 0.000000 0.025641 0.923077 0.025641 0.025641 0.871795 0.000000 0.051282 0.076923 0.000000 0.794872 0.025641 0.179487 0.871795 0.051282 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.846154 0.000000 0.102564 0.051282 0.000000 0.897436 0.102564 0.000000 0.948718 0.025641 0.000000 0.025641 0.025641 0.948718 0.000000 0.025641 0.846154 0.051282 0.051282 0.051282 0.179487 0.717949 0.102564 0.000000 0.692308 0.256410 0.025641 0.025641 0.076923 0.794872 0.076923 0.051282 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACACACACACACACACACACAC MEME-1 regular expression -------------------------------------------------------------------------------- CACACACACACACACACACACACACACAC[AC]C -------------------------------------------------------------------------------- Time 365.26 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 width = 43 sites = 8 llr = 427 E-value = 2.9e-078 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::a::a::::4a:a::a:::::11:aa:a::1::aaa:: pos.-specific C ::::1a::1::::9::::9a::aa:::9a::9::::1::::aa probability G 9:aa:::a9:a1::6:a:1::a::199:::::::99:a::::: matrix T 1:::9::::::9a1::::::::::91:::::1:a1:9:::::: bits 2.1 * * * * * * * ** ** *** 1.9 *** *** ** * *** ***** *** ** ****** 1.7 *** *** ** * *** ***** *** ** ****** 1.5 ************** **************************** Relative 1.3 ************** **************************** Entropy 1.0 ******************************************* (77.1 bits) 0.8 ******************************************* 0.6 ******************************************* 0.4 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr7:74079379-74079879 + 50 3.44e-26 atgatcactt gaggtcaggagttcaagaccagcctggccaacatggtgaaacc ctatctct chr16:30598271-30598771 + 47 1.64e-25 cagatcacct gaggtcaggagttcgagaccagcctgaccaacatggtgaaacc ctgtctctac chr12:48716969-48717469 + 40 1.64e-25 ggcggatcac gaggtcaggagttcgagaccagcctggccaatatggtgaaacc cccgtctcta chr7:100082160-100082660 + 8 2.82e-25 atcacct gaggtcaggagttcgagaccagcctggccaacatggcgaaacc ccgtctcgac chrX:118743728-118744228 + 2 3.97e-25 t gaggtcaggagttcaagaccagccttgccaacatggtgaaacc ctgtctctac chr19:44259442-44259942 - 48 4.97e-24 GGTGGATCAC TAGGTCAGCAGTTTGAGACCAGCCTGGCCAACATGGTGAAACC CCGTCTCTAC chr14:104275895-10427639 + 17 6.90e-24 tggatcacct gaggccaggagttcgagaccagcctggacaacattgtgaaacc tcgtctctac chr21:36210052-36210552 + 41 4.68e-23 tgaatcactt gaggtcaggaggtcaagagcagccgggccaacatgatgaaacc ccacgtttat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:74079379-74079879 3.4e-26 49_[+2]_8 chr16:30598271-30598771 1.6e-25 46_[+2]_11 chr12:48716969-48717469 1.6e-25 39_[+2]_18 chr7:100082160-100082660 2.8e-25 7_[+2]_50 chrX:118743728-118744228 4e-25 1_[+2]_56 chr19:44259442-44259942 5e-24 47_[-2]_10 chr14:104275895-10427639 6.9e-24 16_[+2]_41 chr21:36210052-36210552 4.7e-23 40_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC width=43 seqs=8 chr7:74079379-74079879 ( 50) GAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACC 1 chr16:30598271-30598771 ( 47) GAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACC 1 chr12:48716969-48717469 ( 40) GAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACC 1 chr7:100082160-100082660 ( 8) GAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACC 1 chrX:118743728-118744228 ( 2) GAGGTCAGGAGTTCAAGACCAGCCTTGCCAACATGGTGAAACC 1 chr19:44259442-44259942 ( 48) TAGGTCAGCAGTTTGAGACCAGCCTGGCCAACATGGTGAAACC 1 chr14:104275895-10427639 ( 17) GAGGCCAGGAGTTCGAGACCAGCCTGGACAACATTGTGAAACC 1 chr21:36210052-36210552 ( 41) GAGGTCAGGAGGTCAAGAGCAGCCGGGCCAACATGATGAAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 12.0865 E= 2.9e-078 -965 -965 172 -91 209 -965 -965 -965 -965 -965 191 -965 -965 -965 191 -965 -965 -108 -965 190 -965 191 -965 -965 209 -965 -965 -965 -965 -965 191 -965 -965 -108 172 -965 209 -965 -965 -965 -965 -965 191 -965 -965 -965 -108 190 -965 -965 -965 209 -965 172 -965 -91 67 -965 124 -965 209 -965 -965 -965 -965 -965 191 -965 209 -965 -965 -965 -965 172 -108 -965 -965 191 -965 -965 209 -965 -965 -965 -965 -965 191 -965 -965 191 -965 -965 -965 191 -965 -965 -965 -965 -108 190 -965 -965 172 -91 -91 -965 172 -965 -91 172 -965 -965 -965 191 -965 -965 209 -965 -965 -965 209 -965 -965 -965 -965 172 -965 -91 209 -965 -965 -965 -965 -965 -965 209 -965 -965 172 -91 -91 -965 172 -965 -965 -108 -965 190 -965 -965 191 -965 209 -965 -965 -965 209 -965 -965 -965 209 -965 -965 -965 -965 191 -965 -965 -965 191 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 8 E= 2.9e-078 0.000000 0.000000 0.875000 0.125000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.125000 0.375000 0.000000 0.625000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.875000 0.125000 0.125000 0.000000 0.875000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.125000 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTCAGGAGTTCRAGACCAGCCTGGCCAACATGGTGAAACC MEME-2 regular expression -------------------------------------------------------------------------------- GAGGTCAGGAGTTC[GA]AGACCAGCCTGGCCAACATGGTGAAACC -------------------------------------------------------------------------------- Time 673.04 secs. ******************************************************************************** ******************************************************************************** MOTIF YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 width = 31 sites = 14 llr = 447 E-value = 2.6e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :12:::1::::4:::::::696:4::::1:9 pos.-specific C 68:9a6:a9:8::9a:a99::::::9::::1 probability G ::4:::9::::6a1:::1:4146:a::a9a: matrix T 4141:4::1a2::1:a:11:::46:1a:1:: bits 2.1 * * * 1.9 * * * * *** * ** * 1.7 * * * * *** * ** ** 1.5 ** *** * *** * * **** ** Relative 1.3 ** ***** ******* * ******** Entropy 1.0 ** **************************** (46.1 bits) 0.8 ** **************************** 0.6 ** **************************** 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CCTCCCGCCTCGGCCTCCCAAAGTGCTGGGA consensus T G T TA G GTA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:161764886-161765386 + 36 1.35e-18 acctcgtgat ccgcccgcctcggcctcccaaagtgctggga ttacaggcgt chr17:75905090-75905590 - 42 7.13e-17 ACTTCGTGAT CCACCCGCCTTGGCCTCCCAAAGTGCTGGGA TTCCCGGCGT chr12:120292125-12029262 - 24 1.83e-16 ACCTCGTGAT CCACCCGCCTCGGCCTCCCAGAGTGCTGGGA TTACAGGCGT chr16:30598271-30598771 - 9 4.02e-16 CTCAGGTGAT CTGCCTGCCTTGGCCTCCCAAAGTGCTGGGA TTACAGGC chr20:35616507-35617007 + 29 6.10e-16 ttcaaacgat tctcccgcctcagcctcccgagtagctggga ttacaggcgt chr10:23420833-23421333 + 22 6.10e-16 acctcatgat ccacctgcctcggcctcccaaagtgctgggc ttacgggcgt chr22:37844461-37844961 + 15 7.73e-16 ttgaagcaat tctcctgcctcagcctcccgagtagctggga ctacaggcgc chr1:32109063-32109563 + 13 7.73e-16 ttcaagcgat tctcctgcctcagcctcccgagtagctggga ttacaggcac chr12:48716969-48717469 - 4 3.50e-15 ACCTCGTGAT CCGCCCGCTTCGGGCTCCCAAAGTGCTGGGA TTA chr12:55829120-55829620 - 6 8.32e-15 TTCAAGCGAT TCTTCTGCCTCAGCCTCCCGAGTAGCTGGGA CTACA chr12:56360425-56360925 + 65 1.88e-14 ctcaggtgat tctcccgcctcagcctcccaggtagttggga ctaca chr21:36989335-36989835 + 35 2.42e-14 ctcaagtgat ctgcctgcctcggcctcgcgaagtgctgaga ttacaagcgt chr1:234501084-234501584 - 69 2.89e-14 T CCGCCCACCTTGGTCTCCCAAAGTGCTGTGA TTACAGGCGT chr7:74079379-74079879 - 12 5.15e-14 CTCAAGTGAT CATCCCACCTCGGCCTCTTAAAGTGCTGGGA TTACAGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161764886-161765386 1.3e-18 35_[+3]_34 chr17:75905090-75905590 7.1e-17 41_[-3]_28 chr12:120292125-12029262 1.8e-16 23_[-3]_46 chr16:30598271-30598771 4e-16 8_[-3]_61 chr20:35616507-35617007 6.1e-16 28_[+3]_41 chr10:23420833-23421333 6.1e-16 21_[+3]_48 chr22:37844461-37844961 7.7e-16 14_[+3]_55 chr1:32109063-32109563 7.7e-16 12_[+3]_57 chr12:48716969-48717469 3.5e-15 3_[-3]_66 chr12:55829120-55829620 8.3e-15 5_[-3]_64 chr12:56360425-56360925 1.9e-14 64_[+3]_5 chr21:36989335-36989835 2.4e-14 34_[+3]_35 chr1:234501084-234501584 2.9e-14 68_[-3]_1 chr7:74079379-74079879 5.2e-14 11_[-3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA width=31 seqs=14 chr1:161764886-161765386 ( 36) CCGCCCGCCTCGGCCTCCCAAAGTGCTGGGA 1 chr17:75905090-75905590 ( 42) CCACCCGCCTTGGCCTCCCAAAGTGCTGGGA 1 chr12:120292125-12029262 ( 24) CCACCCGCCTCGGCCTCCCAGAGTGCTGGGA 1 chr16:30598271-30598771 ( 9) CTGCCTGCCTTGGCCTCCCAAAGTGCTGGGA 1 chr20:35616507-35617007 ( 29) TCTCCCGCCTCAGCCTCCCGAGTAGCTGGGA 1 chr10:23420833-23421333 ( 22) CCACCTGCCTCGGCCTCCCAAAGTGCTGGGC 1 chr22:37844461-37844961 ( 15) TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA 1 chr1:32109063-32109563 ( 13) TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA 1 chr12:48716969-48717469 ( 4) CCGCCCGCTTCGGGCTCCCAAAGTGCTGGGA 1 chr12:55829120-55829620 ( 6) TCTTCTGCCTCAGCCTCCCGAGTAGCTGGGA 1 chr12:56360425-56360925 ( 65) TCTCCCGCCTCAGCCTCCCAGGTAGTTGGGA 1 chr21:36989335-36989835 ( 35) CTGCCTGCCTCGGCCTCGCGAAGTGCTGAGA 1 chr1:234501084-234501584 ( 69) CCGCCCACCTTGGTCTCCCAAAGTGCTGTGA 1 chr7:74079379-74079879 ( 12) CATCCCACCTCGGCCTCTTAAAGTGCTGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 10.5293 E= 2.6e-076 -1045 128 -1045 60 -171 157 -1045 -72 -13 -1045 43 87 -1045 181 -1045 -171 -1045 191 -1045 -1045 -1045 111 -1045 87 -72 -1045 169 -1045 -1045 191 -1045 -1045 -1045 181 -1045 -171 -1045 -1045 -1045 209 -1045 157 -1045 -13 60 -1045 128 -1045 -1045 -1045 191 -1045 -1045 169 -189 -171 -1045 191 -1045 -1045 -1045 -1045 -1045 209 -1045 191 -1045 -1045 -1045 169 -189 -171 -1045 181 -1045 -171 145 -1045 43 -1045 187 -1045 -89 -1045 145 -1045 43 -1045 -1045 -1045 128 60 60 -1045 -1045 145 -1045 -1045 191 -1045 -1045 181 -1045 -171 -1045 -1045 -1045 209 -1045 -1045 191 -1045 -171 -1045 169 -171 -1045 -1045 191 -1045 198 -189 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 14 E= 2.6e-076 0.000000 0.642857 0.000000 0.357143 0.071429 0.785714 0.000000 0.142857 0.214286 0.000000 0.357143 0.428571 0.000000 0.928571 0.000000 0.071429 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.785714 0.000000 0.214286 0.357143 0.000000 0.642857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.071429 0.071429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.071429 0.071429 0.000000 0.928571 0.000000 0.071429 0.642857 0.000000 0.357143 0.000000 0.857143 0.000000 0.142857 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 0.000000 0.642857 0.357143 0.357143 0.000000 0.000000 0.642857 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.000000 0.857143 0.071429 0.000000 0.000000 1.000000 0.000000 0.928571 0.071429 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCDCCYGCCTCRGCCTCCCRARKWGCTGGGA MEME-3 regular expression -------------------------------------------------------------------------------- [CT]C[TGA]CC[CT]GCCT[CT][GA]GCCTCCC[AG]A[AG][GT][TA]GCTGGGA -------------------------------------------------------------------------------- Time 979.14 secs. ******************************************************************************** ******************************************************************************** MOTIF CBYCCBCYSCKYYCCCBCCKCY MEME-4 width = 22 sites = 127 llr = 1187 E-value = 1.7e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif CBYCCBCYSCKYYCCCBCCKCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1:::11:1::2::11:::: pos.-specific C 8366649467265586368195 probability G 14:123123221121131:3:2 matrix T 133213131:534113422513 bits 2.1 1.9 1.7 1.5 Relative 1.3 * * * Entropy 1.0 * * * * * (13.5 bits) 0.8 * * * * * * * 0.6 * * * * * ** ** *** 0.4 * ***** ** ** ** ***** 0.2 ********************** 0.0 ---------------------- Multilevel CGCCCCCCCCTCCCCCTCCTCC consensus CTTGG TGGGTTG TCT G T sequence T T G C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBYCCBCYSCKYYCCCBCCKCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:26341830-26342330 - 22 2.26e-10 TCCCGTTCCT CCCTCTCTCCTCTCCCTCCTCC CACTCCTCAC chr21:39183024-39183524 + 75 1.61e-09 CGGGCGTCTC cctccgcccctcctcctcctcc tctt chr5:173328020-173328520 + 47 4.22e-09 tcctcttcct ccttcgccgcttcccctcctcc tcccactctt chr4:102827314-102827814 + 53 5.31e-09 CAGCTGCCAC GCTCCGCCCCTCCCCCTCCTCC TGCCTCTTCA chr14:103520945-10352144 - 64 1.03e-08 TCGCGGCGTC CTCCCTCCCCGCTACCTCCGCT TTCCCTCTCG chr8:25458865-25459365 - 71 2.82e-08 ACGAATCA CTCCGCCACCTCCCCCTTCTCC AGTCCGCGCA chr10:101229145-10122964 + 74 1.00e-07 ctctccttct ctccctctccctcgccctctct ttcac chr1:40691641-40692141 - 66 1.19e-07 GAAGCGCTGC CCCTCCCCCCGCCGCCGCTTCC CTATCACCCT chr1:109484011-109484511 + 18 1.95e-07 TCCTAGTGCC CGCCCGCTCCGTCACCTTCGCG CCTCCGGGTC chr5:74766865-74767365 + 19 1.95e-07 AGAAAATAGG CTTTCTCCGCTCTACCGCCTCG GGCAGCCACA chr22:20496057-20496557 + 12 2.68e-07 ctcttactcc ccccctctcattccctccctcc ttcactctct chr5:81751195-81751695 + 43 3.13e-07 GCCGCCACCC CTCCCCCCGCGCCGCCCGCGCT CAGCTCCTCA chr11:112961101-11296160 + 20 3.13e-07 GGTTCTCACC CCCGCCCCCCGCTCCTCGCTCC CATCCCAGTT chr1:26695412-26695912 + 50 3.65e-07 CCACGGCCTG CGCCCGCTCCGCTCTCCACTCC GGGTTTGCCA chr19:10653857-10654357 - 47 3.65e-07 AGTCACGTGA CTTCGGCACCTTTCCCTCCGCT TTCGATAGGT chr17:48728679-48729179 + 58 4.93e-07 ctctctcgct ctttctctcctctctctcttct ccctctctct chr5:43193069-43193569 + 47 4.93e-07 CTTCTCCCTC CCTCCTTTCCTCCTCCTCCTCT CCCCTTCTCT chr22:39520239-39520739 - 4 5.71e-07 CGTCTCCTCC CGCCCGCTCCCTTCCCTCCCTC CCT chr13:40770930-40771430 + 66 7.61e-07 CTGCCAAACA CGTCCCCGCCCTCTCTTCCGCT TCCGGCCTGG chr17:7836699-7837199 + 71 1.32e-06 CCCGTGCCAT CTCTTTCCCCTCTCCCTTCCCG TGGTCTTA chr12:56079857-56080357 + 12 1.32e-06 Actcaccccc ttccctctgcgttcctccctcc ctctctctct chr21:42923965-42924465 - 36 1.51e-06 TGTACCCATT CTCCTCCCCCACCGCTCTCTCC TGAGGCCTGT chr20:58650932-58651432 - 79 1.73e-06 . CGTTCCCCCCTGGCCCTCTTCC TGTCCGTCCC chr1:175841776-175842276 - 76 1.73e-06 AGC CACTCGCTGCCTTCCTGCCTCC CTTCTGCCAA chr15:72375761-72376261 + 12 2.24e-06 AGCTTGTCAT GGCCCGCTGGTCTCCCCTCTCG GAGGGGGCTG chr17:79811400-79811900 + 54 2.24e-06 GGCATCCTCC CTTACCCTCGTCCTCCTTCTCT TCAAAATCTC chr19:53979811-53980311 - 10 2.54e-06 CGCCCAGGTG GGCCGCCCCGGTCGCCCCCTCC CTCTGCCTC chr20:52972213-52972713 - 66 2.89e-06 CACTCACACG CGCACGCACCCCCGCTTCCTCG CACACACACA chr21:25607259-25607759 + 46 2.89e-06 GCGCGCAAGT CCTTCTCCGCCCTCCTCCCCCG GAAACCGAAC chr11:47578693-47579193 + 77 2.89e-06 CCGGAACCTC CGCTTCCGGCTCCACGTCCGCC CG chr21:46324090-46324590 - 77 2.89e-06 GG CTTCCGCCGGACCGCGTCCTCT CCTGGCAGGG chr19:5308917-5309417 - 23 2.89e-06 GCCAGCCAAC CCCCCCTTCCTCCCTTCTCTCT CCACCCCCGG chr1:5992682-5993182 + 48 2.89e-06 TGCGTCCCTG CCTCCGCCGCTGTCTCACCTCC TCTCCAGCCT chr10:102420964-10242146 - 59 2.89e-06 CCAGACCCAG CCCCGGCTCGGCTCCCCTCCCT CAGGTTCCTC chr17:68511875-68512375 - 10 3.27e-06 GCCTTTGTTC CTCCGCCTGCTCTTCGCTCTCT CTCCGCGCA chr15:70097493-70097993 + 31 3.27e-06 CCTTCCTTCC CCTCGGCCCGGCTCTCCTCTCC GCGCCCCGGC chr17:58417409-58417909 + 45 3.70e-06 GGCAACCACT CCCCACCCTGCCCCCCTCCTCC TGGTGCTCAC chr19:39390607-39391107 - 66 3.70e-06 CCCGCTAGGA CCCCGTCCGGGCTGCCGTCGCC TCGTCGCTAT chr12:120446170-12044667 - 3 3.70e-06 GCGCCGTCGT CGCCGCCGCCACCACTGTCGCC AT chr1:224113831-224114331 - 31 3.70e-06 AACAGGGACA CTTCCGGTGCGTCACTTCCTCC TCCTGCAGCC chr1:204516439-204516939 - 16 4.71e-06 CAACTCTTCC CCTCCCCCCGAGCCCTTCTTCC GCCTGGCGCG chr19:5790848-5791348 + 79 4.71e-06 GAGCCTCCGC CGTTCCCTCCGCCATCGGCGCC chr1:163321602-163322102 + 35 5.30e-06 GCAATGGTTC CGCCCTGCGCCCTGCCCCTTCC ATGACAACTC chr1:155050345-155050845 + 15 5.30e-06 ACGCTGTCCA GTTCCCCTTCTTTCCCGCCTCG CTCCCGGGCT chr4:77075904-77076404 + 3 5.96e-06 CT GTTCCTCCCCGCCGCCTTCCCG GTCCAACGAA chr1:183471805-183472305 - 45 6.70e-06 CTTCTTATCA CTCCTGCCGATTTCCCTCTTCC TTTTTGCACG chr5:93582518-93583018 + 14 6.70e-06 TAGGCGTTCT CCCCCTCGTCATCCCTTCCCCC TCTGGGGTGT chr8:123396325-123396825 - 41 7.51e-06 TTCCTCTCCA CGTTGGCCCGGCCTCCTTCGCT CTACAAATGG chr16:30698044-30698544 - 77 8.42e-06 CG CCTTGCCTCCACTGCCTCTTCG CGCAGCACAC chr1:1375030-1375530 + 41 8.42e-06 CGCCCGCTGG CGTCCTCGCGGCCCCCGATTCT GCATTGGCTC chr12:49130944-49131444 + 5 9.42e-06 CACT CCCGCCCTGGCCTCTCGCCTCG TTTTCCGCCC chr1:66924890-66925390 + 76 9.42e-06 CTGAGGTGTC CTCAGTCCCCTTTCTCTCCTTC CCC chr21:42010029-42010529 + 75 9.42e-06 ACACTCGGCT CGcgcgcgccgcagccgccgct gccg chrX:115892935-115893435 + 1 1.05e-05 . TTCCCCCAGGTCCACTCCCTCC ACCCTTTGCT chr15:72230347-72230847 - 5 1.05e-05 CCGCCCTTCC CGCGCCCCAGTTCCCTCTCGCC GCCC chr12:54359083-54359583 - 75 1.05e-05 CACG CTCTCTCTCTTTCGCTGTCTCT TACAGGCAGA chr1:63523026-63523526 - 79 1.31e-05 . CGCTCGCTCCTTTGCTCGCGCA CACCCGGATC chr17:18087692-18088192 + 48 1.31e-05 GGCTTCCGGG CGCACGCTACTCTGTCGCCGCC GTCAGACCGG chr17:7931998-7932498 - 38 1.31e-05 TGAGATCCCC CTCTCACGCCTCCCCCTACGCT CAAAACCGTT chr19:6737136-6737636 - 22 1.31e-05 GGAGTGGTCT CGTCCGCCCTCCCCCGTCCCCG AGGCGGTGGA chr14:24188706-24189206 + 28 1.46e-05 CCACAAAGAG GTCCGGCTCCTCCACTTCCGTT AGGCTGAGCA chr1:100351732-100352232 - 3 1.46e-05 AACCTCAGAT CTCCGTGCCCTGCCTCGCCTCT AG chr10:96580036-96580536 + 3 1.46e-05 GT CTTCCTCCCCTTTTCTGCTTCA TCTTtgtgtg chr2:231786202-231786702 - 26 1.46e-05 ATCACCCCGG CGTCCGGCGCTTTTCTGTCTCC GCCGACCCGT chr21:36700211-36700711 + 25 1.62e-05 tgttttcttt ccttttctgctttccttccttt ctttggaagt chr5:124661194-124661694 + 38 1.62e-05 TCAGAGGCTG CCTTCCCACCCTCCCCCATTCC ACATTCCAAA chr1:53220270-53220770 + 51 1.80e-05 GCCTCCCAGA CCCTCGCCACCTCCCCTCCGTG TCCCCGCGGC chr17:42388562-42389062 - 9 1.80e-05 CGGTCATCTT CCCTCCCTCCCCCCGGGCTTCT GTGCCCAA chr21:31558415-31558915 + 46 1.80e-05 ACCTGGGCTG CACGGTCTCGTCTCCCTCCTTC GCGCGAGGGA chr2:241102094-241102594 + 47 1.80e-05 TCACTTCCGG CCCCCGGTCCGTCACCGACGCC GTTCCCAGCG chr20:48921200-48921700 + 43 2.00e-05 TCTCCATTCT CGTGCTCCCCTTCACCTCCCGT TACCTTGCGC chr15:75903457-75903957 + 39 2.00e-05 gtgagcagag gccgcgccactccactcccgcc tggccacagc chr5:124747152-124747652 - 57 2.45e-05 TACTAACTCG CCCATCCCCCTCTCCCAGCCCC GACATTTCCA chr15:75368146-75368646 + 3 2.45e-05 CT CCCCGGCCCCTGCCCTGCCCGC GGCGGGCACT chr1:155000710-155001210 + 45 2.45e-05 CAGAGCGCCC CATGCCTGCCGCTACCTCCTCC TTCCTATAGC chr16:1308232-1308732 - 2 2.45e-05 CTCACTCATT CCCTCCCTCACTCATTCCCTCC C chr11:120335856-12033635 - 8 2.71e-05 CCCCGGGAGG CCCACCCACCTCCCGCGGCGCC TGGGCCC chr1:26169662-26170162 + 68 2.71e-05 AGTGCTCACA CGTGTGCTCCCTGCCCTGCTCC TGGCCCCTTG chr6:143450495-143450995 - 3 2.99e-05 CCGGGCCCGC CGCGTTCCGCTGCCCGCGCTCC TC chr1:46132505-46133005 - 14 2.99e-05 TGGTGATGCC TGCTGTCCCCCCTCCCGGCGCG GTTGGGTGGC chr5:134370975-134371475 - 43 3.30e-05 GAAACAGAAA CACTATCCCGTCTCCCTCCCCG TCACTAGTTT chr19:41884054-41884554 - 60 3.30e-05 TCTAGCCCGG CTCCTGCCGGGCTCCGGCCCCG ACGACTCTAC chr19:11344437-11344937 - 26 3.64e-05 CCCTGCTAGC TGCTGTTCCCTCTCCTCCCGCT GGCTGGGCCT chr6:157323321-157323821 - 23 4.01e-05 GAACCTTTCT CCTCCGCCTGGTTCTCGCTTCC ACCCGGGCCC chr21:37073320-37073820 + 78 4.01e-05 GGTTTGCCCC CTTGGTCTGGTGCCCCTTCGCG A chr20:38435112-38435612 - 55 4.01e-05 CCGCAGCTCG CGCTCTCGTCTGTATTTCCGCC GGCGCGAAAC chr19:1652586-1653086 - 30 4.01e-05 TCTCCCCGCG CCGTGGCCCGACCGCCTCCTCT GCGCGTCCCC chr17:59619540-59620040 + 58 4.41e-05 CGAATTCCTG CGCCCGCCGCGCGCGGCGCTCC GTGGAGGGGT chr13:113208573-11320907 + 48 4.41e-05 CCCGGGGTCT TTCTGCCGGGGCCCCGTCCTCT CAGCCGGGAC chr5:96934833-96935333 - 35 4.41e-05 CCTAGTCGCC CCTGCCCCCCAGCACTCGCGCC ATTGCCTCCA chr21:32728063-32728563 - 19 4.41e-05 TTTCTCCGGA GTCCCTCCCCGGCGCTCACGCT CTGAAGAGCC chr19:41310205-41310705 + 59 4.84e-05 GGACACCCAC CCCCCTCAGCTTTACCGGTCCT CTTCACTACT chr9:37800504-37801004 - 22 4.84e-05 AAACCCGCGC CGCCCCTCGGCCACCGTCCGCC GGGGACCGGG chr1:225999027-225999527 + 62 4.84e-05 CGCGAATCCA CACCAGCGCCGCGGCCTCCGCC ATGTCACCGA chr20:38446408-38446908 + 53 4.84e-05 GCTGCAGCCG CGCCCCCAGCCGTATTTCCGCG GGCGCTGAGC chr19:1021419-1021919 + 26 5.83e-05 GTCTACAGCT CGTCACCTCGTTTGGCTTCTCT TGCCCGGATC chr17:59209675-59210175 - 43 5.83e-05 CGTCACTTGA GTTCCGCCTCCTCTTCTCCTCT CCTAGTTTGT chr19:1445441-1445941 + 59 5.83e-05 CCCttacggc ggccccccgcgcgcccagctcg gcgcccagca chr1:228109328-228109828 - 3 5.83e-05 ACCCGCGGGT CCCCCTCGACCTCGCCGGCCCG CC chr10:93702418-93702918 - 55 6.39e-05 CGGGCCGTTT CTCCCGCTGCCCTTGTTTCCCG GAGCTGTTCT chr21:32612459-32612959 - 6 6.39e-05 TTGGGAGGTC CGCCCTCCCCTTCAGCGACTTG GTCTG chr22:38681742-38682242 + 39 6.39e-05 CTACAGTCAT GGCTGCCGCCGTCGCTGCTGCC GGTGCAGGGG chr9:133030692-133031192 - 15 7.00e-05 GCGAAGGAAT CGTTCCGGGCTCCCTCACCGCT CGCGTCATCC chr5:116574669-116575169 + 23 7.00e-05 TCGGACTCTC CTTCCGCAACTCCGCCTACTTT GGCTGGCGTC chr19:38336499-38336999 - 77 7.00e-05 TA TTCCGCCCCCTCCCTGTATTCC ACTCTTGCTC chr10:21525507-21526007 - 53 7.00e-05 AGCTCTTAAC CCCACCCCCACCTTCCACCGCC AACACACTTC chrX:72276896-72277396 - 45 7.65e-05 GCTCTTAGGA CGTATCCGCCTCCATCCTCCCC CGGCCGGGGC chr20:63658032-63658532 - 59 7.65e-05 ACTGCACTTC CGCCCCCCACTTCCGGTCCGTT GCTTTGTGCT chr17:32341935-32342435 + 79 8.36e-05 GGTATCAGGG CTCGTCCGGCTCCCGGCCCTCG chr1:93078907-93079407 - 55 9.13e-05 GGAGGAACAC CGCGCCCTGCGTCCCCGACTGG GGCTGAACAA chr1:231626351-231626851 + 59 9.13e-05 AGGCTGTGAG GGCCGCTGGCCCCGCCCGCTCC AGCAGCgtgt chr15:69452691-69453191 + 48 9.13e-05 GCCCTACACT CGCCCGCGCCATGGCCTCTGTC TCCGAGCTCG chr22:21567305-21567805 + 71 9.95e-05 gtgcggttca cttgcgttcctccacgcgcccc ccagcaca chr11:125625744-12562624 - 70 9.95e-05 CCTTCCCTA CTCTACCGGCCGCCCTTCCTCA CCGGACTGTC chr15:72783620-72784120 - 3 9.95e-05 CCCCTCGCTC CGTCCTGGCGCCGCCCGTCGCC CC chr13:41132378-41132878 + 73 9.95e-05 TGAATTCAAC CCTACCCCGCAGAACCGCCTCC CGTTAT chr22:20981801-20982301 - 51 1.40e-04 TCGTCCCTAG CCCCGTCGCGACTGCTCTTCCC GGCGCCTCCC chr19:35248262-35248762 - 2 1.52e-04 GATAGGGCGG GTCCCGCCGCGCACCTGTTCCC T chr5:139341705-139342205 + 44 1.64e-04 CGACAGGATT CGTTGGCTGCCGTCCCCGCTGC TGTGCATTGG chr22:44331998-44332498 + 42 1.64e-04 acttcctttc cgtccgttctttcacgccttcc tcctcatttt chr14:90383183-90383683 + 67 1.78e-04 TGTGTGACGA CACCGCCGTGTGCTCCTCCGCT GGGAGATATA chr17:43483566-43484066 - 44 1.78e-04 TGGGTTACTC TGCACGCCGATCTGCGCCCTCT ACAGGCGAGA chr22:20117205-20117705 + 62 2.09e-04 TGGTTTTGAA TCGCGGCGCGTTTCCCGCCGCT ggggtcaggg chr20:33401293-33401793 + 33 2.26e-04 ACACAAGCGA CTTCCGTTCCGCCGCTACTTCA GGCCGGGTCA chr16:30957606-30958106 - 54 2.26e-04 CCGAGGGTAG CGGCTTCGCCTCGGCCGGCGCC CTGGGAGGCT chr19:39341640-39342140 - 67 2.84e-04 CGGGCTTCTG GGCGCTCGGCTTTCTCATCGCG CTGTTCTCAG chr18:11688927-11689427 - 78 2.84e-04 C CGCCGCCGGTCCAGCCCTCGCT ACCGTAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBYCCBCYSCKYYCCCBCCKCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26341830-26342330 2.3e-10 21_[-4]_57 chr21:39183024-39183524 1.6e-09 74_[+4]_4 chr5:173328020-173328520 4.2e-09 46_[+4]_32 chr4:102827314-102827814 5.3e-09 52_[+4]_26 chr14:103520945-10352144 1e-08 63_[-4]_15 chr8:25458865-25459365 2.8e-08 70_[-4]_8 chr10:101229145-10122964 1e-07 73_[+4]_5 chr1:40691641-40692141 1.2e-07 65_[-4]_13 chr1:109484011-109484511 2e-07 17_[+4]_61 chr5:74766865-74767365 2e-07 18_[+4]_60 chr22:20496057-20496557 2.7e-07 11_[+4]_67 chr5:81751195-81751695 3.1e-07 42_[+4]_36 chr11:112961101-11296160 3.1e-07 19_[+4]_59 chr1:26695412-26695912 3.6e-07 49_[+4]_29 chr19:10653857-10654357 3.6e-07 46_[-4]_32 chr17:48728679-48729179 4.9e-07 57_[+4]_21 chr5:43193069-43193569 4.9e-07 46_[+4]_32 chr22:39520239-39520739 5.7e-07 3_[-4]_75 chr13:40770930-40771430 7.6e-07 65_[+4]_13 chr17:7836699-7837199 1.3e-06 70_[+4]_8 chr12:56079857-56080357 1.3e-06 11_[+4]_67 chr21:42923965-42924465 1.5e-06 35_[-4]_43 chr20:58650932-58651432 1.7e-06 78_[-4] chr1:175841776-175842276 1.7e-06 75_[-4]_3 chr15:72375761-72376261 2.2e-06 11_[+4]_67 chr17:79811400-79811900 2.2e-06 53_[+4]_25 chr19:53979811-53980311 2.5e-06 9_[-4]_69 chr20:52972213-52972713 2.9e-06 65_[-4]_13 chr21:25607259-25607759 2.9e-06 45_[+4]_33 chr11:47578693-47579193 2.9e-06 76_[+4]_2 chr21:46324090-46324590 2.9e-06 76_[-4]_2 chr19:5308917-5309417 2.9e-06 22_[-4]_56 chr1:5992682-5993182 2.9e-06 47_[+4]_31 chr10:102420964-10242146 2.9e-06 58_[-4]_20 chr17:68511875-68512375 3.3e-06 9_[-4]_69 chr15:70097493-70097993 3.3e-06 30_[+4]_48 chr17:58417409-58417909 3.7e-06 44_[+4]_34 chr19:39390607-39391107 3.7e-06 65_[-4]_13 chr12:120446170-12044667 3.7e-06 2_[-4]_76 chr1:224113831-224114331 3.7e-06 30_[-4]_48 chr1:204516439-204516939 4.7e-06 15_[-4]_63 chr19:5790848-5791348 4.7e-06 78_[+4] chr1:163321602-163322102 5.3e-06 34_[+4]_44 chr1:155050345-155050845 5.3e-06 14_[+4]_64 chr4:77075904-77076404 6e-06 2_[+4]_76 chr1:183471805-183472305 6.7e-06 44_[-4]_34 chr5:93582518-93583018 6.7e-06 13_[+4]_65 chr8:123396325-123396825 7.5e-06 40_[-4]_38 chr16:30698044-30698544 8.4e-06 76_[-4]_2 chr1:1375030-1375530 8.4e-06 40_[+4]_38 chr12:49130944-49131444 9.4e-06 4_[+4]_74 chr1:66924890-66925390 9.4e-06 75_[+4]_3 chr21:42010029-42010529 9.4e-06 74_[+4]_4 chrX:115892935-115893435 1.1e-05 [+4]_78 chr15:72230347-72230847 1.1e-05 4_[-4]_74 chr12:54359083-54359583 1.1e-05 74_[-4]_4 chr1:63523026-63523526 1.3e-05 78_[-4] chr17:18087692-18088192 1.3e-05 47_[+4]_31 chr17:7931998-7932498 1.3e-05 37_[-4]_41 chr19:6737136-6737636 1.3e-05 21_[-4]_57 chr14:24188706-24189206 1.5e-05 27_[+4]_51 chr1:100351732-100352232 1.5e-05 2_[-4]_76 chr10:96580036-96580536 1.5e-05 2_[+4]_76 chr2:231786202-231786702 1.5e-05 25_[-4]_53 chr21:36700211-36700711 1.6e-05 24_[+4]_54 chr5:124661194-124661694 1.6e-05 37_[+4]_41 chr1:53220270-53220770 1.8e-05 50_[+4]_28 chr17:42388562-42389062 1.8e-05 8_[-4]_70 chr21:31558415-31558915 1.8e-05 45_[+4]_33 chr2:241102094-241102594 1.8e-05 46_[+4]_32 chr20:48921200-48921700 2e-05 42_[+4]_36 chr15:75903457-75903957 2e-05 38_[+4]_40 chr5:124747152-124747652 2.4e-05 56_[-4]_22 chr15:75368146-75368646 2.4e-05 2_[+4]_76 chr1:155000710-155001210 2.4e-05 44_[+4]_34 chr16:1308232-1308732 2.4e-05 1_[-4]_77 chr11:120335856-12033635 2.7e-05 7_[-4]_71 chr1:26169662-26170162 2.7e-05 67_[+4]_11 chr6:143450495-143450995 3e-05 2_[-4]_76 chr1:46132505-46133005 3e-05 13_[-4]_65 chr5:134370975-134371475 3.3e-05 42_[-4]_36 chr19:41884054-41884554 3.3e-05 59_[-4]_19 chr19:11344437-11344937 3.6e-05 25_[-4]_53 chr6:157323321-157323821 4e-05 22_[-4]_56 chr21:37073320-37073820 4e-05 77_[+4]_1 chr20:38435112-38435612 4e-05 54_[-4]_24 chr19:1652586-1653086 4e-05 29_[-4]_49 chr17:59619540-59620040 4.4e-05 57_[+4]_21 chr13:113208573-11320907 4.4e-05 47_[+4]_31 chr5:96934833-96935333 4.4e-05 34_[-4]_44 chr21:32728063-32728563 4.4e-05 18_[-4]_60 chr19:41310205-41310705 4.8e-05 58_[+4]_20 chr9:37800504-37801004 4.8e-05 21_[-4]_57 chr1:225999027-225999527 4.8e-05 61_[+4]_17 chr20:38446408-38446908 4.8e-05 52_[+4]_26 chr19:1021419-1021919 5.8e-05 25_[+4]_53 chr17:59209675-59210175 5.8e-05 42_[-4]_36 chr19:1445441-1445941 5.8e-05 58_[+4]_20 chr1:228109328-228109828 5.8e-05 2_[-4]_76 chr10:93702418-93702918 6.4e-05 54_[-4]_24 chr21:32612459-32612959 6.4e-05 5_[-4]_73 chr22:38681742-38682242 6.4e-05 38_[+4]_40 chr9:133030692-133031192 7e-05 14_[-4]_64 chr5:116574669-116575169 7e-05 22_[+4]_56 chr19:38336499-38336999 7e-05 76_[-4]_2 chr10:21525507-21526007 7e-05 52_[-4]_26 chrX:72276896-72277396 7.7e-05 44_[-4]_34 chr20:63658032-63658532 7.7e-05 58_[-4]_20 chr17:32341935-32342435 8.4e-05 78_[+4] chr1:93078907-93079407 9.1e-05 54_[-4]_24 chr1:231626351-231626851 9.1e-05 58_[+4]_20 chr15:69452691-69453191 9.1e-05 47_[+4]_31 chr22:21567305-21567805 0.0001 70_[+4]_8 chr11:125625744-12562624 0.0001 69_[-4]_9 chr15:72783620-72784120 0.0001 2_[-4]_76 chr13:41132378-41132878 0.0001 72_[+4]_6 chr22:20981801-20982301 0.00014 50_[-4]_28 chr19:35248262-35248762 0.00015 1_[-4]_77 chr5:139341705-139342205 0.00016 43_[+4]_35 chr22:44331998-44332498 0.00016 41_[+4]_37 chr14:90383183-90383683 0.00018 66_[+4]_12 chr17:43483566-43484066 0.00018 43_[-4]_35 chr22:20117205-20117705 0.00021 61_[+4]_17 chr20:33401293-33401793 0.00023 32_[+4]_46 chr16:30957606-30958106 0.00023 53_[-4]_25 chr19:39341640-39342140 0.00028 66_[-4]_12 chr18:11688927-11689427 0.00028 77_[-4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBYCCBCYSCKYYCCCBCCKCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CBYCCBCYSCKYYCCCBCCKCY width=22 seqs=127 chr6:26341830-26342330 ( 22) CCCTCTCTCCTCTCCCTCCTCC 1 chr21:39183024-39183524 ( 75) CCTCCGCCCCTCCTCCTCCTCC 1 chr5:173328020-173328520 ( 47) CCTTCGCCGCTTCCCCTCCTCC 1 chr4:102827314-102827814 ( 53) GCTCCGCCCCTCCCCCTCCTCC 1 chr14:103520945-10352144 ( 64) CTCCCTCCCCGCTACCTCCGCT 1 chr8:25458865-25459365 ( 71) CTCCGCCACCTCCCCCTTCTCC 1 chr10:101229145-10122964 ( 74) CTCCCTCTCCCTCGCCCTCTCT 1 chr1:40691641-40692141 ( 66) CCCTCCCCCCGCCGCCGCTTCC 1 chr1:109484011-109484511 ( 18) CGCCCGCTCCGTCACCTTCGCG 1 chr5:74766865-74767365 ( 19) CTTTCTCCGCTCTACCGCCTCG 1 chr22:20496057-20496557 ( 12) CCCCCTCTCATTCCCTCCCTCC 1 chr5:81751195-81751695 ( 43) CTCCCCCCGCGCCGCCCGCGCT 1 chr11:112961101-11296160 ( 20) CCCGCCCCCCGCTCCTCGCTCC 1 chr1:26695412-26695912 ( 50) CGCCCGCTCCGCTCTCCACTCC 1 chr19:10653857-10654357 ( 47) CTTCGGCACCTTTCCCTCCGCT 1 chr17:48728679-48729179 ( 58) CTTTCTCTCCTCTCTCTCTTCT 1 chr5:43193069-43193569 ( 47) CCTCCTTTCCTCCTCCTCCTCT 1 chr22:39520239-39520739 ( 4) CGCCCGCTCCCTTCCCTCCCTC 1 chr13:40770930-40771430 ( 66) CGTCCCCGCCCTCTCTTCCGCT 1 chr17:7836699-7837199 ( 71) CTCTTTCCCCTCTCCCTTCCCG 1 chr12:56079857-56080357 ( 12) TTCCCTCTGCGTTCCTCCCTCC 1 chr21:42923965-42924465 ( 36) CTCCTCCCCCACCGCTCTCTCC 1 chr20:58650932-58651432 ( 79) CGTTCCCCCCTGGCCCTCTTCC 1 chr1:175841776-175842276 ( 76) CACTCGCTGCCTTCCTGCCTCC 1 chr15:72375761-72376261 ( 12) GGCCCGCTGGTCTCCCCTCTCG 1 chr17:79811400-79811900 ( 54) CTTACCCTCGTCCTCCTTCTCT 1 chr19:53979811-53980311 ( 10) GGCCGCCCCGGTCGCCCCCTCC 1 chr20:52972213-52972713 ( 66) CGCACGCACCCCCGCTTCCTCG 1 chr21:25607259-25607759 ( 46) CCTTCTCCGCCCTCCTCCCCCG 1 chr11:47578693-47579193 ( 77) CGCTTCCGGCTCCACGTCCGCC 1 chr21:46324090-46324590 ( 77) CTTCCGCCGGACCGCGTCCTCT 1 chr19:5308917-5309417 ( 23) CCCCCCTTCCTCCCTTCTCTCT 1 chr1:5992682-5993182 ( 48) CCTCCGCCGCTGTCTCACCTCC 1 chr10:102420964-10242146 ( 59) CCCCGGCTCGGCTCCCCTCCCT 1 chr17:68511875-68512375 ( 10) CTCCGCCTGCTCTTCGCTCTCT 1 chr15:70097493-70097993 ( 31) CCTCGGCCCGGCTCTCCTCTCC 1 chr17:58417409-58417909 ( 45) CCCCACCCTGCCCCCCTCCTCC 1 chr19:39390607-39391107 ( 66) CCCCGTCCGGGCTGCCGTCGCC 1 chr12:120446170-12044667 ( 3) CGCCGCCGCCACCACTGTCGCC 1 chr1:224113831-224114331 ( 31) CTTCCGGTGCGTCACTTCCTCC 1 chr1:204516439-204516939 ( 16) CCTCCCCCCGAGCCCTTCTTCC 1 chr19:5790848-5791348 ( 79) CGTTCCCTCCGCCATCGGCGCC 1 chr1:163321602-163322102 ( 35) CGCCCTGCGCCCTGCCCCTTCC 1 chr1:155050345-155050845 ( 15) GTTCCCCTTCTTTCCCGCCTCG 1 chr4:77075904-77076404 ( 3) GTTCCTCCCCGCCGCCTTCCCG 1 chr1:183471805-183472305 ( 45) CTCCTGCCGATTTCCCTCTTCC 1 chr5:93582518-93583018 ( 14) CCCCCTCGTCATCCCTTCCCCC 1 chr8:123396325-123396825 ( 41) CGTTGGCCCGGCCTCCTTCGCT 1 chr16:30698044-30698544 ( 77) CCTTGCCTCCACTGCCTCTTCG 1 chr1:1375030-1375530 ( 41) CGTCCTCGCGGCCCCCGATTCT 1 chr12:49130944-49131444 ( 5) CCCGCCCTGGCCTCTCGCCTCG 1 chr1:66924890-66925390 ( 76) CTCAGTCCCCTTTCTCTCCTTC 1 chr21:42010029-42010529 ( 75) CGCGCGCGCCGCAGCCGCCGCT 1 chrX:115892935-115893435 ( 1) TTCCCCCAGGTCCACTCCCTCC 1 chr15:72230347-72230847 ( 5) CGCGCCCCAGTTCCCTCTCGCC 1 chr12:54359083-54359583 ( 75) CTCTCTCTCTTTCGCTGTCTCT 1 chr1:63523026-63523526 ( 79) CGCTCGCTCCTTTGCTCGCGCA 1 chr17:18087692-18088192 ( 48) CGCACGCTACTCTGTCGCCGCC 1 chr17:7931998-7932498 ( 38) CTCTCACGCCTCCCCCTACGCT 1 chr19:6737136-6737636 ( 22) CGTCCGCCCTCCCCCGTCCCCG 1 chr14:24188706-24189206 ( 28) GTCCGGCTCCTCCACTTCCGTT 1 chr1:100351732-100352232 ( 3) CTCCGTGCCCTGCCTCGCCTCT 1 chr10:96580036-96580536 ( 3) CTTCCTCCCCTTTTCTGCTTCA 1 chr2:231786202-231786702 ( 26) CGTCCGGCGCTTTTCTGTCTCC 1 chr21:36700211-36700711 ( 25) CCTTTTCTGCTTTCCTTCCTTT 1 chr5:124661194-124661694 ( 38) CCTTCCCACCCTCCCCCATTCC 1 chr1:53220270-53220770 ( 51) CCCTCGCCACCTCCCCTCCGTG 1 chr17:42388562-42389062 ( 9) CCCTCCCTCCCCCCGGGCTTCT 1 chr21:31558415-31558915 ( 46) CACGGTCTCGTCTCCCTCCTTC 1 chr2:241102094-241102594 ( 47) CCCCCGGTCCGTCACCGACGCC 1 chr20:48921200-48921700 ( 43) CGTGCTCCCCTTCACCTCCCGT 1 chr15:75903457-75903957 ( 39) GCCGCGCCACTCCACTCCCGCC 1 chr5:124747152-124747652 ( 57) CCCATCCCCCTCTCCCAGCCCC 1 chr15:75368146-75368646 ( 3) CCCCGGCCCCTGCCCTGCCCGC 1 chr1:155000710-155001210 ( 45) CATGCCTGCCGCTACCTCCTCC 1 chr16:1308232-1308732 ( 2) CCCTCCCTCACTCATTCCCTCC 1 chr11:120335856-12033635 ( 8) CCCACCCACCTCCCGCGGCGCC 1 chr1:26169662-26170162 ( 68) CGTGTGCTCCCTGCCCTGCTCC 1 chr6:143450495-143450995 ( 3) CGCGTTCCGCTGCCCGCGCTCC 1 chr1:46132505-46133005 ( 14) TGCTGTCCCCCCTCCCGGCGCG 1 chr5:134370975-134371475 ( 43) CACTATCCCGTCTCCCTCCCCG 1 chr19:41884054-41884554 ( 60) CTCCTGCCGGGCTCCGGCCCCG 1 chr19:11344437-11344937 ( 26) TGCTGTTCCCTCTCCTCCCGCT 1 chr6:157323321-157323821 ( 23) CCTCCGCCTGGTTCTCGCTTCC 1 chr21:37073320-37073820 ( 78) CTTGGTCTGGTGCCCCTTCGCG 1 chr20:38435112-38435612 ( 55) CGCTCTCGTCTGTATTTCCGCC 1 chr19:1652586-1653086 ( 30) CCGTGGCCCGACCGCCTCCTCT 1 chr17:59619540-59620040 ( 58) CGCCCGCCGCGCGCGGCGCTCC 1 chr13:113208573-11320907 ( 48) TTCTGCCGGGGCCCCGTCCTCT 1 chr5:96934833-96935333 ( 35) CCTGCCCCCCAGCACTCGCGCC 1 chr21:32728063-32728563 ( 19) GTCCCTCCCCGGCGCTCACGCT 1 chr19:41310205-41310705 ( 59) CCCCCTCAGCTTTACCGGTCCT 1 chr9:37800504-37801004 ( 22) CGCCCCTCGGCCACCGTCCGCC 1 chr1:225999027-225999527 ( 62) CACCAGCGCCGCGGCCTCCGCC 1 chr20:38446408-38446908 ( 53) CGCCCCCAGCCGTATTTCCGCG 1 chr19:1021419-1021919 ( 26) CGTCACCTCGTTTGGCTTCTCT 1 chr17:59209675-59210175 ( 43) GTTCCGCCTCCTCTTCTCCTCT 1 chr19:1445441-1445941 ( 59) GGCCCCCCGCGCGCCCAGCTCG 1 chr1:228109328-228109828 ( 3) CCCCCTCGACCTCGCCGGCCCG 1 chr10:93702418-93702918 ( 55) CTCCCGCTGCCCTTGTTTCCCG 1 chr21:32612459-32612959 ( 6) CGCCCTCCCCTTCAGCGACTTG 1 chr22:38681742-38682242 ( 39) GGCTGCCGCCGTCGCTGCTGCC 1 chr9:133030692-133031192 ( 15) CGTTCCGGGCTCCCTCACCGCT 1 chr5:116574669-116575169 ( 23) CTTCCGCAACTCCGCCTACTTT 1 chr19:38336499-38336999 ( 77) TTCCGCCCCCTCCCTGTATTCC 1 chr10:21525507-21526007 ( 53) CCCACCCCCACCTTCCACCGCC 1 chrX:72276896-72277396 ( 45) CGTATCCGCCTCCATCCTCCCC 1 chr20:63658032-63658532 ( 59) CGCCCCCCACTTCCGGTCCGTT 1 chr17:32341935-32342435 ( 79) CTCGTCCGGCTCCCGGCCCTCG 1 chr1:93078907-93079407 ( 55) CGCGCCCTGCGTCCCCGACTGG 1 chr1:231626351-231626851 ( 59) GGCCGCTGGCCCCGCCCGCTCC 1 chr15:69452691-69453191 ( 48) CGCCCGCGCCATGGCCTCTGTC 1 chr22:21567305-21567805 ( 71) CTTGCGTTCCTCCACGCGCCCC 1 chr11:125625744-12562624 ( 70) CTCTACCGGCCGCCCTTCCTCA 1 chr15:72783620-72784120 ( 3) CGTCCTGGCGCCGCCCGTCGCC 1 chr13:41132378-41132878 ( 73) CCTACCCCGCAGAACCGCCTCC 1 chr22:20981801-20982301 ( 51) CCCCGTCGCGACTGCTCTTCCC 1 chr19:35248262-35248762 ( 2) GTCCCGCCGCGCACCTGTTCCC 1 chr5:139341705-139342205 ( 44) CGTTGGCTGCCGTCCCCGCTGC 1 chr22:44331998-44332498 ( 42) CGTCCGTTCTTTCACGCCTTCC 1 chr14:90383183-90383683 ( 67) CACCGCCGTGTGCTCCTCCGCT 1 chr17:43483566-43484066 ( 44) TGCACGCCGATCTGCGCCCTCT 1 chr22:20117205-20117705 ( 62) TCGCGGCGCGTTTCCCGCCGCT 1 chr20:33401293-33401793 ( 33) CTTCCGTTCCGCCGCTACTTCA 1 chr16:30957606-30958106 ( 54) CGGCTTCGCCTCGGCCGGCGCC 1 chr19:39341640-39342140 ( 67) GGCGCTCGGCTTTCTCATCGCG 1 chr18:11688927-11689427 ( 78) CGCCGCCGGTCCAGCCCTCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBYCCBCYSCKYYCCCBCCKCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.85862 E= 1.7e-034 -1363 164 -127 -190 -231 17 45 31 -1363 125 -349 56 -158 106 -107 6 -258 128 -27 -131 -489 45 39 27 -1363 172 -227 -173 -173 68 -37 35 -209 112 25 -209 -258 143 -32 -290 -144 -32 -17 98 -1363 110 -117 42 -258 97 -207 69 -37 90 -22 -131 -1363 157 -207 -65 -1363 117 -107 23 -209 6 -7 83 -158 110 -90 -14 -1363 167 -1363 -58 -1363 -83 25 119 -1363 175 -307 -158 -290 90 -49 27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBYCCBCYSCKYYCCCBCCKCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 127 E= 1.7e-034 0.000000 0.826772 0.110236 0.062992 0.047244 0.299213 0.362205 0.291339 0.000000 0.629921 0.023622 0.346457 0.078740 0.551181 0.125984 0.244094 0.039370 0.645669 0.220472 0.094488 0.007874 0.362205 0.346457 0.283465 0.000000 0.874016 0.055118 0.070866 0.070866 0.425197 0.204724 0.299213 0.055118 0.574803 0.314961 0.055118 0.039370 0.716535 0.212598 0.031496 0.086614 0.212598 0.236220 0.464567 0.000000 0.566929 0.118110 0.314961 0.039370 0.519685 0.062992 0.377953 0.181102 0.496063 0.228346 0.094488 0.000000 0.787402 0.062992 0.149606 0.000000 0.598425 0.125984 0.275591 0.055118 0.275591 0.251969 0.417323 0.078740 0.566929 0.141732 0.212598 0.000000 0.842520 0.000000 0.157480 0.000000 0.149606 0.314961 0.535433 0.000000 0.889764 0.031496 0.078740 0.031496 0.496063 0.188976 0.283465 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBYCCBCYSCKYYCCCBCCKCY MEME-4 regular expression -------------------------------------------------------------------------------- C[GCT][CT][CT][CG][CGT]C[CTG][CG][CG][TGC][CT][CT][CG]C[CT][TCG][CT]C[TG]C[CT] -------------------------------------------------------------------------------- Time 1286.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGYGGTGGCKCACGCCTGTA MEME-5 width = 22 sites = 12 llr = 287 E-value = 3.2e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGYGGTGGCKCACGCCTGTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::2:::::1:::8:2:::::a pos.-specific C ::9:5:::::8:8:8:a91::: probability G aa:8:aa:a9:413:8::1a1: matrix T ::1:5::a::361:2::18:9: bits 2.1 * * 1.9 ** **** * * * 1.7 ** **** * *** 1.5 *** ***** ** *** Relative 1.3 **** ***** ********* Entropy 1.0 ********************** (34.5 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GGCGCGGTGGCTCACGCCTGTA consensus T TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGYGGTGGCKCACGCCTGTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:120292125-12029262 + 1 1.88e-13 . ggcgcggtggctcacgcctgta atcccagcac chr1:161764886-161765386 - 68 1.88e-13 AATAAGGCCG GGCGCGGTGGCTCACGCCTGTA ATCCCAGCAC chr17:4625808-4626308 - 23 1.47e-12 ATGAGCACCG GGCGCGGTGGCTCACACCTGTA ATCTCAGCAC chr22:37844461-37844961 - 47 1.58e-12 AAATTAGCTG GGCGTGGTGGCGCGCGCCTGTA GTCCCAGCTA chr1:150876851-150877351 + 69 1.97e-12 aaattagccg ggcgtggtggcgcatgcctgta atcccagctt chr20:35616507-35617007 - 61 1.97e-12 AAATTGGCCG GGCATGGTGGCGCACGCCTGTA ATCCCAGCTA chr21:36989335-36989835 - 67 9.69e-12 GCTGGGGCCG GGCGCGGTGGTTCACGCTTGTA ATCTCAGCAC chr1:234501084-234501584 + 46 1.35e-11 ATGGGggccg ggcatggtgactcacgcctgta atcacagcac chr10:23420833-23421333 - 54 3.56e-11 GATAAGGCTG GGTGCGGTGGCTCACGCCCGTA AGCCCAGCAC chr17:75905090-75905590 + 19 4.51e-11 TTGAGggctg ggcgcggtggctcacgccggga atcccagcac chrX:118743728-118744228 + 76 9.33e-11 aagttagcca ggcgtggtggtgtgcacctgta atc chr1:32109063-32109563 - 45 1.04e-10 AAATCAGCCG GGCGTGGTGGTGGGTGCCTGTA ATCCCAGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGYGGTGGCKCACGCCTGTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:120292125-12029262 1.9e-13 [+5]_78 chr1:161764886-161765386 1.9e-13 67_[-5]_11 chr17:4625808-4626308 1.5e-12 22_[-5]_56 chr22:37844461-37844961 1.6e-12 46_[-5]_32 chr1:150876851-150877351 2e-12 68_[+5]_10 chr20:35616507-35617007 2e-12 60_[-5]_18 chr21:36989335-36989835 9.7e-12 66_[-5]_12 chr1:234501084-234501584 1.3e-11 45_[+5]_33 chr10:23420833-23421333 3.6e-11 53_[-5]_25 chr17:75905090-75905590 4.5e-11 18_[+5]_60 chrX:118743728-118744228 9.3e-11 75_[+5]_3 chr1:32109063-32109563 1e-10 44_[-5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGYGGTGGCKCACGCCTGTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGYGGTGGCKCACGCCTGTA width=22 seqs=12 chr12:120292125-12029262 ( 1) GGCGCGGTGGCTCACGCCTGTA 1 chr1:161764886-161765386 ( 68) GGCGCGGTGGCTCACGCCTGTA 1 chr17:4625808-4626308 ( 23) GGCGCGGTGGCTCACACCTGTA 1 chr22:37844461-37844961 ( 47) GGCGTGGTGGCGCGCGCCTGTA 1 chr1:150876851-150877351 ( 69) GGCGTGGTGGCGCATGCCTGTA 1 chr20:35616507-35617007 ( 61) GGCATGGTGGCGCACGCCTGTA 1 chr21:36989335-36989835 ( 67) GGCGCGGTGGTTCACGCTTGTA 1 chr1:234501084-234501584 ( 46) GGCATGGTGACTCACGCCTGTA 1 chr10:23420833-23421333 ( 54) GGTGCGGTGGCTCACGCCCGTA 1 chr17:75905090-75905590 ( 19) GGCGCGGTGGCTCACGCCGGGA 1 chrX:118743728-118744228 ( 76) GGCGTGGTGGTGTGCACCTGTA 1 chr1:32109063-32109563 ( 45) GGCGTGGTGGTGGGTGCCTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGYGGTGGCKCACGCCTGTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.6061 E= 3.2e-033 -1023 -1023 191 -1023 -1023 -1023 191 -1023 -1023 179 -1023 -149 -49 -1023 165 -1023 -1023 91 -1023 109 -1023 -1023 191 -1023 -1023 -1023 191 -1023 -1023 -1023 -1023 209 -1023 -1023 191 -1023 -149 -1023 179 -1023 -1023 150 -1023 9 -1023 -1023 65 131 -1023 165 -167 -149 167 -1023 -9 -1023 -1023 165 -1023 -49 -49 -1023 165 -1023 -1023 191 -1023 -1023 -1023 179 -1023 -149 -1023 -167 -167 183 -1023 -1023 191 -1023 -1023 -1023 -167 196 209 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGYGGTGGCKCACGCCTGTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 12 E= 3.2e-033 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.166667 0.000000 0.833333 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.416667 0.583333 0.000000 0.833333 0.083333 0.083333 0.750000 0.000000 0.250000 0.000000 0.000000 0.833333 0.000000 0.166667 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.083333 0.083333 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.916667 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGYGGTGGCKCACGCCTGTA MEME-5 regular expression -------------------------------------------------------------------------------- GGCG[CT]GGTGG[CT][TG]C[AG]CGCCTGTA -------------------------------------------------------------------------------- Time 1582.30 secs. ******************************************************************************** ******************************************************************************** MOTIF AMAHAHAMACAH MEME-6 width = 12 sites = 68 llr = 695 E-value = 4.0e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMAHAHAMACAH MEME-6 Description -------------------------------------------------------------------------------- Simplified A a593a394a394 pos.-specific C :5:4:3:6:7:3 probability G :::1:::::::1 matrix T ::12:31:::12 bits 2.1 * * * 1.9 * * * 1.7 * * * * * 1.5 * * * * * * Relative 1.3 * * * * * * Entropy 1.0 *** * * *** (14.7 bits) 0.8 *** * ***** 0.6 *** * ***** 0.4 *** * ***** 0.2 ************ 0.0 ------------ Multilevel AAACAAACACAA consensus C A C A A C sequence T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHAHAMACAH MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:8226755-8227255 + 9 1.63e-07 AGAAAACA AAACACACACAA AAAAAAGCCA chr1:32109063-32109563 - 77 2.40e-07 TGTCTCTACC AAAAACACACAA AAATCAGCCG chr19:36604686-36605186 + 88 3.22e-07 agaacggcac acacaaacacaa t chr21:38913546-38914046 + 46 3.22e-07 aacacataca acacaaacacaa cagacaacac chr10:75294726-75295226 - 12 5.73e-07 GCTGACAGAG AAATATACACAA CAGCGTAACC chr10:50463956-50464456 + 31 1.10e-06 ttaccacaat aaaaacaaACAA gagattatcc chr6:43702489-43702989 - 23 1.47e-06 ACACACACAC AAACACACACAT TCACACACCC chr1:228781606-228782106 - 85 1.83e-06 GACC ACACAAACACAC AAACCATACA chr17:58658854-58659354 + 41 1.83e-06 ACAACTCTGA AAATAAACACAC GCAACAACAC chr12:57111962-57112462 + 1 2.31e-06 . acacacacacac acacGTGCAG chr17:40140159-40140659 + 47 2.31e-06 acacacacac acacacacacac acacacacac chr1:28884781-28885281 + 84 2.31e-06 acacacacac acacacacacac acaca chr21:35047270-35047770 + 77 2.31e-06 acacacacac acacacacacac acactctctc chr15:70097493-70097993 + 87 2.31e-06 cacacaccca acacacacacac gc chr19:38831830-38832330 + 82 2.31e-06 aaaaaacaaa acaaacaaacaa aaaaaaA chr1:228782568-228783068 - 40 2.92e-06 CATACACATC ACAAACACACAC CCCACACAGC chr7:120806666-120807166 + 46 2.92e-06 TGCCCATAAC ACATAAAAACAA ATCAGGCATG chr12:949522-950022 + 37 2.92e-06 GGAGGGGGAA AAAAAAAAACAC AGACCAGAGA chr19:44259442-44259942 - 25 3.39e-06 CGTCTCTACT AAAAATACAAAA ATTAGCTGGG chr1:150876851-150877351 + 50 3.39e-06 cgtctctact aaaaatacaaaa ttagccgggc chr22:37844461-37844961 - 77 3.39e-06 CGTCTCTACT AAAAATACAAAA ATTAGCTGGG chrX:118743728-118744228 + 56 3.39e-06 tgtctctact aaaaatacaaaa gttagccagg chr14:104275895-10427639 + 71 3.39e-06 cgtctctact aaaaatacaaaa attagccagg chr7:100082160-100082660 + 62 3.39e-06 cgtctcgact aaaaatacaaaa aaattacccg chr3:156161112-156161612 - 40 3.79e-06 GTGAAACAAG AAAAATAAACAT GTGGTAAAGA chr1:231626351-231626851 - 89 3.79e-06 . ACATACACACAC ACGCTGCTGG chr1:3403740-3404240 + 63 3.79e-06 TGTTTTCTTT ACATAAACACAT AAATCACAAT chr22:35364129-35364629 + 5 5.01e-06 tctc aaaaaaaaaaaa agaTCCCATT chr6:158040256-158040756 + 78 5.01e-06 TCAGTCTATT AAAAAAAAAAAA GGATGTAAGA chr12:56190202-56190702 - 46 5.01e-06 GAAGAAAGAA AAAAAAAAAAAA CCCGTCACGA chr10:23420833-23421333 - 88 5.57e-06 G AAACATACACAG CTGATAAGGC chr7:27165498-27165998 - 1 6.24e-06 CGATCCCTTT ACATAAAAACAT chr1:167658572-167659072 - 34 6.85e-06 AACACTAGAG ACAAAAAAAAAA TACCATAAAA chr5:38782982-38783482 - 1 6.85e-06 TTGTCCTTGC AAAGATAAACAA chr10:72097725-72098225 + 60 7.66e-06 CAGAGCATGC ACACACACACAG AACAACCCAA chr20:35616507-35617007 - 89 9.23e-06 . AAACACAAAAAT TGGCCGGGCA chr12:51024782-51025282 + 10 9.23e-06 GTCCAATGA AAAAATAAACAG CCGAAGGTTT chr9:135967582-135968082 - 84 1.01e-05 ATGGC ACATATACACAG TGCACACATA chr8:109611157-109611657 + 81 1.12e-05 ACCCTGCCAT AAAGATAAACAC TAAGTCCA chr17:59547211-59547711 + 20 1.12e-05 ATCATTACAG AAAGACACAAAA TCATTATCGT chr14:32134484-32134984 - 75 1.12e-05 AGGATAAGCA AAAGACAAACAC ATGAAGACAT chr1:228902932-228903432 - 62 1.12e-05 ATAAATGACC AAATATAAACAG TGGAGTGGTG chr6:139152291-139152791 + 25 1.12e-05 TACTGTAAGC AAAGAAAAACAT GTTTAACTGA chr1:232678539-232679039 + 9 1.39e-05 CCTCATAA AATTATACACAA AGCATGCCTT chr17:71438645-71439145 - 30 1.49e-05 GCAGCTTAAC AATCACAAACAA CAGCACAGTT chr5:174505489-174505989 + 58 1.49e-05 TGACCTACTA AAACACTCACAT GATAAACTTG chr20:52972213-52972713 - 49 1.77e-05 CCTCGCACAC ACACACTCACAC CCCCCACATA chr9:82923380-82923880 - 5 1.77e-05 CTGTGAGGGA AAACAATAACAC ATTT chr16:324358-324858 + 75 1.93e-05 TCAGCACATG ACACAGACACAC TTACTTGATC chr8:37472305-37472805 - 89 1.93e-05 . ACATAAACAAAG TTGTGGGGGT chr22:31055476-31055976 - 61 1.93e-05 TGCAGTGCAA ACACATTCACAT TCTTGGGTCA chr22:30195951-30196451 + 13 1.93e-05 GATCAACTGA AATAATACACAT TTCCTCTGAT chr1:156660146-156660646 - 88 2.11e-05 C ACTCACACACAC GCATGCGCGT chr12:56041743-56042243 + 29 2.11e-05 TTCCATGGAT AAATAAACACTA GGAACGCATT chr5:88516262-88516762 - 49 2.11e-05 TCCACGCCAA AATTATACACAC AGAGTGAGTT chr20:44728744-44729244 + 29 2.31e-05 cactcaacat aataaaacaaaa ggaatttaat chr21:45591106-45591606 + 40 2.49e-05 cacacactcc acatagacacac acaacactcc chr3:16482954-16483454 + 37 2.66e-05 AGGAAAGGCA AAACAAACACTT CAGAGTACTT chr7:114417989-114418489 - 42 2.89e-05 ACACTTGACA ACACAGAAACAT TTCTCATTCA chr9:123678500-123679000 - 63 3.32e-05 GCTGATTGAA ACATATTAACAT AAGTGATAAT chr3:181328955-181329455 - 35 3.84e-05 TTGAGTGCAG AAAGACTCACAT TGTAAATCCA chr6:143755239-143755739 + 27 3.84e-05 TCCCTTATCA ACATAATAAAAA GTTCCTGACA chr20:35319233-35319733 + 57 3.84e-05 ACTTTTTATG ACATAATAAAAA TGTTACCTTA chr12:4538410-4538910 - 36 3.84e-05 TCTCTGAAAT ACAGAATAACAA TAGAAATACA chr5:17305895-17306395 + 50 5.13e-05 GTTGCGTGTT AAACAAATAAAT TAGAGATTCC chr9:109816410-109816910 + 32 5.37e-05 tgagtcatga acacaaacactg aagtcacccc chr16:25049523-25050023 + 84 5.92e-05 taaaagtgta acacatacaatt atgta chr5:116574669-116575169 - 80 9.80e-05 CTCACTCGC ACTCACATACAC CACAGCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHAHAMACAH MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:8226755-8227255 1.6e-07 8_[+6]_80 chr1:32109063-32109563 2.4e-07 76_[-6]_12 chr19:36604686-36605186 3.2e-07 87_[+6]_1 chr21:38913546-38914046 3.2e-07 45_[+6]_43 chr10:75294726-75295226 5.7e-07 11_[-6]_77 chr10:50463956-50464456 1.1e-06 30_[+6]_58 chr6:43702489-43702989 1.5e-06 22_[-6]_66 chr1:228781606-228782106 1.8e-06 84_[-6]_4 chr17:58658854-58659354 1.8e-06 40_[+6]_48 chr12:57111962-57112462 2.3e-06 [+6]_88 chr17:40140159-40140659 2.3e-06 46_[+6]_42 chr1:28884781-28885281 2.3e-06 83_[+6]_5 chr21:35047270-35047770 2.3e-06 76_[+6]_12 chr15:70097493-70097993 2.3e-06 86_[+6]_2 chr19:38831830-38832330 2.3e-06 81_[+6]_7 chr1:228782568-228783068 2.9e-06 39_[-6]_49 chr7:120806666-120807166 2.9e-06 45_[+6]_43 chr12:949522-950022 2.9e-06 36_[+6]_52 chr19:44259442-44259942 3.4e-06 24_[-6]_64 chr1:150876851-150877351 3.4e-06 49_[+6]_39 chr22:37844461-37844961 3.4e-06 76_[-6]_12 chrX:118743728-118744228 3.4e-06 55_[+6]_33 chr14:104275895-10427639 3.4e-06 70_[+6]_18 chr7:100082160-100082660 3.4e-06 61_[+6]_27 chr3:156161112-156161612 3.8e-06 39_[-6]_49 chr1:231626351-231626851 3.8e-06 88_[-6] chr1:3403740-3404240 3.8e-06 62_[+6]_26 chr22:35364129-35364629 5e-06 4_[+6]_84 chr6:158040256-158040756 5e-06 77_[+6]_11 chr12:56190202-56190702 5e-06 45_[-6]_43 chr10:23420833-23421333 5.6e-06 87_[-6]_1 chr7:27165498-27165998 6.2e-06 [-6]_88 chr1:167658572-167659072 6.8e-06 33_[-6]_55 chr5:38782982-38783482 6.8e-06 [-6]_88 chr10:72097725-72098225 7.7e-06 59_[+6]_29 chr20:35616507-35617007 9.2e-06 88_[-6] chr12:51024782-51025282 9.2e-06 9_[+6]_79 chr9:135967582-135968082 1e-05 83_[-6]_5 chr8:109611157-109611657 1.1e-05 80_[+6]_8 chr17:59547211-59547711 1.1e-05 19_[+6]_69 chr14:32134484-32134984 1.1e-05 74_[-6]_14 chr1:228902932-228903432 1.1e-05 61_[-6]_27 chr6:139152291-139152791 1.1e-05 24_[+6]_64 chr1:232678539-232679039 1.4e-05 8_[+6]_80 chr17:71438645-71439145 1.5e-05 29_[-6]_59 chr5:174505489-174505989 1.5e-05 57_[+6]_31 chr20:52972213-52972713 1.8e-05 48_[-6]_40 chr9:82923380-82923880 1.8e-05 4_[-6]_84 chr16:324358-324858 1.9e-05 74_[+6]_14 chr8:37472305-37472805 1.9e-05 88_[-6] chr22:31055476-31055976 1.9e-05 60_[-6]_28 chr22:30195951-30196451 1.9e-05 12_[+6]_76 chr1:156660146-156660646 2.1e-05 87_[-6]_1 chr12:56041743-56042243 2.1e-05 28_[+6]_60 chr5:88516262-88516762 2.1e-05 48_[-6]_40 chr20:44728744-44729244 2.3e-05 28_[+6]_60 chr21:45591106-45591606 2.5e-05 39_[+6]_49 chr3:16482954-16483454 2.7e-05 36_[+6]_52 chr7:114417989-114418489 2.9e-05 41_[-6]_47 chr9:123678500-123679000 3.3e-05 62_[-6]_26 chr3:181328955-181329455 3.8e-05 34_[-6]_54 chr6:143755239-143755739 3.8e-05 26_[+6]_62 chr20:35319233-35319733 3.8e-05 56_[+6]_32 chr12:4538410-4538910 3.8e-05 35_[-6]_53 chr5:17305895-17306395 5.1e-05 49_[+6]_39 chr9:109816410-109816910 5.4e-05 31_[+6]_57 chr16:25049523-25050023 5.9e-05 83_[+6]_5 chr5:116574669-116575169 9.8e-05 79_[-6]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHAHAMACAH MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMAHAHAMACAH width=12 seqs=68 chr17:8226755-8227255 ( 9) AAACACACACAA 1 chr1:32109063-32109563 ( 77) AAAAACACACAA 1 chr19:36604686-36605186 ( 88) ACACAAACACAA 1 chr21:38913546-38914046 ( 46) ACACAAACACAA 1 chr10:75294726-75295226 ( 12) AAATATACACAA 1 chr10:50463956-50464456 ( 31) AAAAACAAACAA 1 chr6:43702489-43702989 ( 23) AAACACACACAT 1 chr1:228781606-228782106 ( 85) ACACAAACACAC 1 chr17:58658854-58659354 ( 41) AAATAAACACAC 1 chr12:57111962-57112462 ( 1) ACACACACACAC 1 chr17:40140159-40140659 ( 47) ACACACACACAC 1 chr1:28884781-28885281 ( 84) ACACACACACAC 1 chr21:35047270-35047770 ( 77) ACACACACACAC 1 chr15:70097493-70097993 ( 87) ACACACACACAC 1 chr19:38831830-38832330 ( 82) ACAAACAAACAA 1 chr1:228782568-228783068 ( 40) ACAAACACACAC 1 chr7:120806666-120807166 ( 46) ACATAAAAACAA 1 chr12:949522-950022 ( 37) AAAAAAAAACAC 1 chr19:44259442-44259942 ( 25) AAAAATACAAAA 1 chr1:150876851-150877351 ( 50) AAAAATACAAAA 1 chr22:37844461-37844961 ( 77) AAAAATACAAAA 1 chrX:118743728-118744228 ( 56) AAAAATACAAAA 1 chr14:104275895-10427639 ( 71) AAAAATACAAAA 1 chr7:100082160-100082660 ( 62) AAAAATACAAAA 1 chr3:156161112-156161612 ( 40) AAAAATAAACAT 1 chr1:231626351-231626851 ( 89) ACATACACACAC 1 chr1:3403740-3404240 ( 63) ACATAAACACAT 1 chr22:35364129-35364629 ( 5) AAAAAAAAAAAA 1 chr6:158040256-158040756 ( 78) AAAAAAAAAAAA 1 chr12:56190202-56190702 ( 46) AAAAAAAAAAAA 1 chr10:23420833-23421333 ( 88) AAACATACACAG 1 chr7:27165498-27165998 ( 1) ACATAAAAACAT 1 chr1:167658572-167659072 ( 34) ACAAAAAAAAAA 1 chr5:38782982-38783482 ( 1) AAAGATAAACAA 1 chr10:72097725-72098225 ( 60) ACACACACACAG 1 chr20:35616507-35617007 ( 89) AAACACAAAAAT 1 chr12:51024782-51025282 ( 10) AAAAATAAACAG 1 chr9:135967582-135968082 ( 84) ACATATACACAG 1 chr8:109611157-109611657 ( 81) AAAGATAAACAC 1 chr17:59547211-59547711 ( 20) AAAGACACAAAA 1 chr14:32134484-32134984 ( 75) AAAGACAAACAC 1 chr1:228902932-228903432 ( 62) AAATATAAACAG 1 chr6:139152291-139152791 ( 25) AAAGAAAAACAT 1 chr1:232678539-232679039 ( 9) AATTATACACAA 1 chr17:71438645-71439145 ( 30) AATCACAAACAA 1 chr5:174505489-174505989 ( 58) AAACACTCACAT 1 chr20:52972213-52972713 ( 49) ACACACTCACAC 1 chr9:82923380-82923880 ( 5) AAACAATAACAC 1 chr16:324358-324858 ( 75) ACACAGACACAC 1 chr8:37472305-37472805 ( 89) ACATAAACAAAG 1 chr22:31055476-31055976 ( 61) ACACATTCACAT 1 chr22:30195951-30196451 ( 13) AATAATACACAT 1 chr1:156660146-156660646 ( 88) ACTCACACACAC 1 chr12:56041743-56042243 ( 29) AAATAAACACTA 1 chr5:88516262-88516762 ( 49) AATTATACACAC 1 chr20:44728744-44729244 ( 29) AATAAAACAAAA 1 chr21:45591106-45591606 ( 40) ACATAGACACAC 1 chr3:16482954-16483454 ( 37) AAACAAACACTT 1 chr7:114417989-114418489 ( 42) ACACAGAAACAT 1 chr9:123678500-123679000 ( 63) ACATATTAACAT 1 chr3:181328955-181329455 ( 35) AAAGACTCACAT 1 chr6:143755239-143755739 ( 27) ACATAATAAAAA 1 chr20:35319233-35319733 ( 57) ACATAATAAAAA 1 chr12:4538410-4538910 ( 36) ACAGAATAACAA 1 chr5:17305895-17306395 ( 50) AAACAAATAAAT 1 chr9:109816410-109816910 ( 32) ACACAAACACTG 1 chr16:25049523-25050023 ( 84) ACACATACAATT 1 chr5:116574669-116575169 ( 80) ACTCACATACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHAHAMACAH MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.3821 E= 4.0e-028 209 -1273 -1273 -1273 121 78 -1273 -1273 193 -1273 -1273 -119 25 53 -136 0 209 -1273 -1273 -1273 53 29 -259 32 189 -1273 -1273 -83 59 122 -1273 -300 209 -1273 -1273 -1273 17 147 -1273 -1273 200 -1273 -1273 -200 76 8 -136 -9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHAHAMACAH MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 68 E= 4.0e-028 1.000000 0.000000 0.000000 0.000000 0.544118 0.455882 0.000000 0.000000 0.897059 0.000000 0.000000 0.102941 0.279412 0.382353 0.102941 0.235294 1.000000 0.000000 0.000000 0.000000 0.338235 0.323529 0.044118 0.294118 0.867647 0.000000 0.000000 0.132353 0.352941 0.617647 0.000000 0.029412 1.000000 0.000000 0.000000 0.000000 0.264706 0.735294 0.000000 0.000000 0.941176 0.000000 0.000000 0.058824 0.397059 0.279412 0.102941 0.220588 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHAHAMACAH MEME-6 regular expression -------------------------------------------------------------------------------- A[AC]A[CAT]A[ACT]A[CA]A[CA]A[ACT] -------------------------------------------------------------------------------- Time 1875.20 secs. ******************************************************************************** ******************************************************************************** MOTIF YYTYCYTCYYTYCYTCHYTYWY MEME-7 width = 22 sites = 42 llr = 527 E-value = 1.0e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYTYCYTCYYTYCYTCHYTYWY MEME-7 Description -------------------------------------------------------------------------------- Simplified A 11::1:1:2::21:::2:1132 pos.-specific C 54:67537442566:8431624 probability G :::1::::::2:1:11:::::: matrix T 45a3246346632491477455 bits 2.1 1.9 * 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.0 * * *** * (18.1 bits) 0.8 * **** * *** ** 0.6 ******** *** *** ***** 0.4 **************** ***** 0.2 ********************** 0.0 ---------------------- Multilevel CTTCCCTCCTTCCCTCCTTCTT consensus TC TTTCTTC TTT TC TAC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYCYTCYYTYCYTCHYTYWY MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr5:43193069-43193569 + 12 8.89e-12 CTGTTTTTTC CTTCCCTCCTTCCCTCCTTTTC CCTCTTCTCC chr11:120346934-12034743 + 2 1.90e-10 c cttccttccttccttccttcct tccttccttc chr10:101229145-10122964 + 18 3.84e-10 ctgttctcgc tctccctccctccctctctctt ctctcttctc chr17:7484245-7484745 + 70 9.59e-09 CCCAAAAAcc ttttccttttcccttctttttt tttcctttt chr10:79445870-79446370 + 53 1.12e-08 CCTTTCTCAT ACTCCTTCTTTCTCTCTCTCTT AGACTAGTAC chr22:20496057-20496557 + 76 1.52e-08 cccaccattc ccttcctccctcactcattcac tcc chr17:48728679-48729179 + 1 2.05e-08 . tctctctctctctctctctctc tctctgtctc chr16:1308232-1308732 - 59 2.73e-08 TCACTCATTC CCTCCCTCACTTACTCATTCAT TCCCACTCAC chr6:26341830-26342330 - 69 4.13e-08 ACCTCTCATT CCTCCTTCTTTCCCTCGTACTC CACTCTTCTC chr20:48921200-48921700 + 3 6.14e-08 TC CTTTCCTCATCTCCTCTCTTAC CCACGTCATC chr21:35047270-35047770 + 4 1.14e-07 TTG TTTtcttctctttctctttaac ttctctcttg chr22:44331998-44332498 + 11 1.14e-07 tttgcggtgg cttctcactttctctcttttta cttcctttcc chr21:36700211-36700711 + 79 1.29e-07 tgctttcttt ctttccccatcccttcctttct chr1:229221384-229221884 - 27 1.45e-07 GTGATCTCCA CTTGACTCCTTACCTCTTTCAT TTGGTTGTAA chr1:31937360-31937860 + 22 1.45e-07 TCAACTCTCT CCTCCCCCATTTACTCACTCAT TCTACCACCA chr17:4948595-4949095 - 40 1.63e-07 AATTCCTCCT GCTTTCTCCTTCCTTCCTTCTT CTGGCTCACT chr19:40806679-40807179 + 56 2.04e-07 TAATGAACAC TTTCCCCCTTTTCCTGTCTTTA GTAGCTTCCT chr14:103520945-10352144 + 1 2.55e-07 . cctcctcctcctcctcctcctc GCCGCGAGGG chr9:92325155-92325655 + 16 2.84e-07 CCCAACGGAG CATCCTCTCTTCCTTCCTACTC GATTTCCAAC chr17:8186785-8187285 + 60 3.51e-07 TTCCCAGCTG CATCCATCCTTTCCTCATTTTC GTATGCAGCC chr5:173328020-173328520 + 76 3.90e-07 tcctcccact cttcctttttgctcgccttttc cct chr5:57042470-57042970 + 1 4.79e-07 . ttttcttctctctctctcctaa cagccagtaa chr10:101442016-10144251 + 45 5.29e-07 ATTGAATTAG AAtctctctctctctctctctc tgtctctgtg chr17:7836699-7837199 + 13 7.81e-07 AATGAGGCTT CCTCCCCCTTCTATTCCCTCCC ACCTCTGCCC chr20:5119595-5120095 - 32 7.81e-07 ACCAGCTAGA CTTTCCTCCTTCCCGCCTGCCT GTAGCGGCGT chr19:17337100-17337600 + 2 1.13e-06 C CTTTCTTCCATTCCTTATTCCT ATTGTCAGCC chr19:17334703-17335203 + 48 1.35e-06 GTTTTCTGGG TTTCCTTCTCGCCCGCCTACCT CGCTCCCTGC chr1:5992682-5993182 + 73 1.91e-06 CACCTCCTCT CCAGCCTCCTCACCTCCTTCTC CATCGT chr10:42782488-42782988 + 40 2.07e-06 CATGCCGGTC TCTTTTTTCTGCCTTCTTGTTT CCCTCCGGCG chrX:101408061-101408561 - 19 3.10e-06 ATACCGGGTA ATTTTCCTCCTTCTTCCCTCAA ACGGCTATAG chr12:121719841-12172034 + 17 3.90e-06 GCTGCATGCA CCTCATCTCCTAGCTCtttcac agctgatgac chr12:949522-950022 - 66 4.53e-06 TTGCGGCTCT TTTCCCCTCCGACTTGATTTAC GGTTCCTTCT chr11:47578693-47579193 + 32 5.62e-06 CCTGTCTCGC TTTCTCACCTGCGTTCCCTCCT TTCATCCCGG chr17:21457143-21457643 - 10 5.62e-06 CTGGGCACAG CATGCTTCATGATCTCATTTTA TACTGACGT chr5:150449638-150450138 - 51 6.03e-06 AACCAGCCCT CTACCTCTTTTCGCTCTCCCTT AAGTAATAAA chr8:109611157-109611657 - 42 6.47e-06 GGTTACATAT TTTCTCTCATGCCTTTCTCCCA TCTGTGTTTT chr8:28445265-28445765 + 33 7.42e-06 CCCATGGACT TCTCTTCCACTCCTTGCCTATC AGGGGCTGGA chr21:38985978-38986478 - 67 7.93e-06 CACCCTTTTG CCTTCCATTCTCCTTGTTTATA CAGTCCATGT chr10:665576-666076 - 21 7.93e-06 CTGGCTCTTG TTTTCCTTTCGATCTCGTATAT TTCATCGGGT chr6:26571599-26572099 - 32 7.93e-06 TTTTATGTGG TTTCCTCTCCCACCTTACCCTT TGGCCTTTAC chr12:25615014-25615514 - 74 1.68e-05 TCTAC TCTGCTTCTCCTATTTCTATAT CCAGGAATTG chr5:160008638-160009138 - 16 1.78e-05 TTATTTATTT ATTTATTTATTTATTTATTTAT TTTTGAGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYCYTCYYTYCYTCHYTYWY MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:43193069-43193569 8.9e-12 11_[+7]_67 chr11:120346934-12034743 1.9e-10 1_[+7]_77 chr10:101229145-10122964 3.8e-10 17_[+7]_61 chr17:7484245-7484745 9.6e-09 69_[+7]_9 chr10:79445870-79446370 1.1e-08 52_[+7]_26 chr22:20496057-20496557 1.5e-08 75_[+7]_3 chr17:48728679-48729179 2e-08 [+7]_78 chr16:1308232-1308732 2.7e-08 58_[-7]_20 chr6:26341830-26342330 4.1e-08 68_[-7]_10 chr20:48921200-48921700 6.1e-08 2_[+7]_76 chr21:35047270-35047770 1.1e-07 3_[+7]_75 chr22:44331998-44332498 1.1e-07 10_[+7]_68 chr21:36700211-36700711 1.3e-07 78_[+7] chr1:229221384-229221884 1.4e-07 26_[-7]_52 chr1:31937360-31937860 1.4e-07 21_[+7]_57 chr17:4948595-4949095 1.6e-07 39_[-7]_39 chr19:40806679-40807179 2e-07 55_[+7]_23 chr14:103520945-10352144 2.5e-07 [+7]_78 chr9:92325155-92325655 2.8e-07 15_[+7]_63 chr17:8186785-8187285 3.5e-07 59_[+7]_19 chr5:173328020-173328520 3.9e-07 75_[+7]_3 chr5:57042470-57042970 4.8e-07 [+7]_78 chr10:101442016-10144251 5.3e-07 44_[+7]_34 chr17:7836699-7837199 7.8e-07 12_[+7]_66 chr20:5119595-5120095 7.8e-07 31_[-7]_47 chr19:17337100-17337600 1.1e-06 1_[+7]_77 chr19:17334703-17335203 1.4e-06 47_[+7]_31 chr1:5992682-5993182 1.9e-06 72_[+7]_6 chr10:42782488-42782988 2.1e-06 39_[+7]_39 chrX:101408061-101408561 3.1e-06 18_[-7]_60 chr12:121719841-12172034 3.9e-06 16_[+7]_62 chr12:949522-950022 4.5e-06 65_[-7]_13 chr11:47578693-47579193 5.6e-06 31_[+7]_47 chr17:21457143-21457643 5.6e-06 9_[-7]_69 chr5:150449638-150450138 6e-06 50_[-7]_28 chr8:109611157-109611657 6.5e-06 41_[-7]_37 chr8:28445265-28445765 7.4e-06 32_[+7]_46 chr21:38985978-38986478 7.9e-06 66_[-7]_12 chr10:665576-666076 7.9e-06 20_[-7]_58 chr6:26571599-26572099 7.9e-06 31_[-7]_47 chr12:25615014-25615514 1.7e-05 73_[-7]_5 chr5:160008638-160009138 1.8e-05 15_[-7]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYCYTCYYTYCYTCHYTYWY MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYTYCYTCYYTYCYTCHYTYWY width=22 seqs=42 chr5:43193069-43193569 ( 12) CTTCCCTCCTTCCCTCCTTTTC 1 chr11:120346934-12034743 ( 2) CTTCCTTCCTTCCTTCCTTCCT 1 chr10:101229145-10122964 ( 18) TCTCCCTCCCTCCCTCTCTCTT 1 chr17:7484245-7484745 ( 70) TTTTCCTTTTCCCTTCTTTTTT 1 chr10:79445870-79446370 ( 53) ACTCCTTCTTTCTCTCTCTCTT 1 chr22:20496057-20496557 ( 76) CCTTCCTCCCTCACTCATTCAC 1 chr17:48728679-48729179 ( 1) TCTCTCTCTCTCTCTCTCTCTC 1 chr16:1308232-1308732 ( 59) CCTCCCTCACTTACTCATTCAT 1 chr6:26341830-26342330 ( 69) CCTCCTTCTTTCCCTCGTACTC 1 chr20:48921200-48921700 ( 3) CTTTCCTCATCTCCTCTCTTAC 1 chr21:35047270-35047770 ( 4) TTTTCTTCTCTTTCTCTTTAAC 1 chr22:44331998-44332498 ( 11) CTTCTCACTTTCTCTCTTTTTA 1 chr21:36700211-36700711 ( 79) CTTTCCCCATCCCTTCCTTTCT 1 chr1:229221384-229221884 ( 27) CTTGACTCCTTACCTCTTTCAT 1 chr1:31937360-31937860 ( 22) CCTCCCCCATTTACTCACTCAT 1 chr17:4948595-4949095 ( 40) GCTTTCTCCTTCCTTCCTTCTT 1 chr19:40806679-40807179 ( 56) TTTCCCCCTTTTCCTGTCTTTA 1 chr14:103520945-10352144 ( 1) CCTCCTCCTCCTCCTCCTCCTC 1 chr9:92325155-92325655 ( 16) CATCCTCTCTTCCTTCCTACTC 1 chr17:8186785-8187285 ( 60) CATCCATCCTTTCCTCATTTTC 1 chr5:173328020-173328520 ( 76) CTTCCTTTTTGCTCGCCTTTTC 1 chr5:57042470-57042970 ( 1) TTTTCTTCTCTCTCTCTCCTAA 1 chr10:101442016-10144251 ( 45) AATCTCTCTCTCTCTCTCTCTC 1 chr17:7836699-7837199 ( 13) CCTCCCCCTTCTATTCCCTCCC 1 chr20:5119595-5120095 ( 32) CTTTCCTCCTTCCCGCCTGCCT 1 chr19:17337100-17337600 ( 2) CTTTCTTCCATTCCTTATTCCT 1 chr19:17334703-17335203 ( 48) TTTCCTTCTCGCCCGCCTACCT 1 chr1:5992682-5993182 ( 73) CCAGCCTCCTCACCTCCTTCTC 1 chr10:42782488-42782988 ( 40) TCTTTTTTCTGCCTTCTTGTTT 1 chrX:101408061-101408561 ( 19) ATTTTCCTCCTTCTTCCCTCAA 1 chr12:121719841-12172034 ( 17) CCTCATCTCCTAGCTCTTTCAC 1 chr12:949522-950022 ( 66) TTTCCCCTCCGACTTGATTTAC 1 chr11:47578693-47579193 ( 32) TTTCTCACCTGCGTTCCCTCCT 1 chr17:21457143-21457643 ( 10) CATGCTTCATGATCTCATTTTA 1 chr5:150449638-150450138 ( 51) CTACCTCTTTTCGCTCTCCCTT 1 chr8:109611157-109611657 ( 42) TTTCTCTCATGCCTTTCTCCCA 1 chr8:28445265-28445765 ( 33) TCTCTTCCACTCCTTGCCTATC 1 chr21:38985978-38986478 ( 67) CCTTCCATTCTCCTTGTTTATA 1 chr10:665576-666076 ( 21) TTTTCCTTTCGATCTCGTATAT 1 chr6:26571599-26572099 ( 32) TTTCCTCTCCCACCTTACCCTT 1 chr12:25615014-25615514 ( 74) TCTGCTTCTCCTATTTCTATAT 1 chr5:160008638-160009138 ( 16) ATTTATTTATTTATTTATTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYCYTCYYTYCYTCHYTYWY MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.126 E= 1.0e-017 -130 98 -347 60 -130 52 -1204 116 -230 -1204 -1204 202 -1204 111 -148 51 -172 143 -1204 -13 -330 105 -1204 87 -172 11 -1204 145 -1204 143 -1204 28 -30 61 -1204 79 -330 61 -1204 128 -1204 -48 -48 140 -49 105 -1204 28 -72 111 -189 -13 -1204 128 -1204 60 -1204 -1204 -189 198 -1204 157 -148 -98 -13 52 -248 60 -1204 33 -1204 151 -98 -116 -248 160 -172 111 -1204 60 40 -48 -1204 109 -49 52 -1204 95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYCYTCYYTYCYTCHYTYWY MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 42 E= 1.0e-017 0.095238 0.523810 0.023810 0.357143 0.095238 0.380952 0.000000 0.523810 0.047619 0.000000 0.000000 0.952381 0.000000 0.571429 0.095238 0.333333 0.071429 0.714286 0.000000 0.214286 0.023810 0.547619 0.000000 0.428571 0.071429 0.285714 0.000000 0.642857 0.000000 0.714286 0.000000 0.285714 0.190476 0.404762 0.000000 0.404762 0.023810 0.404762 0.000000 0.571429 0.000000 0.190476 0.190476 0.619048 0.166667 0.547619 0.000000 0.285714 0.142857 0.571429 0.071429 0.214286 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 0.071429 0.928571 0.000000 0.785714 0.095238 0.119048 0.214286 0.380952 0.047619 0.357143 0.000000 0.333333 0.000000 0.666667 0.119048 0.119048 0.047619 0.714286 0.071429 0.571429 0.000000 0.357143 0.309524 0.190476 0.000000 0.500000 0.166667 0.380952 0.000000 0.452381 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYCYTCYYTYCYTCHYTYWY MEME-7 regular expression -------------------------------------------------------------------------------- [CT][TC]T[CT][CT][CT][TC][CT][CT][TC]T[CT][CT][CT]TC[CTA][TC]T[CT][TA][TC] -------------------------------------------------------------------------------- Time 2153.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 width = 31 sites = 10 llr = 250 E-value = 4.9e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 16121:1:15:::a8::31:2a:::121:41 pos.-specific C 8:::71::13:9:::a6747::aa:6:231: probability G 1368149a4:::a:::::4:7:::::55741 matrix T :13:15::42a1::2:4:131:::a332:18 bits 2.1 * * * * 1.9 * * ** * **** 1.7 * * ** * **** 1.5 ** ****** **** Relative 1.3 * ** ****** **** * Entropy 1.0 * * ** ******** * **** * * (36.1 bits) 0.8 ** * ** ******** ****** * * 0.6 ******** ********* ******* * * 0.4 ******** ********* ******** * * 0.2 ******************************* 0.0 ------------------------------- Multilevel CAGGCTGGGATCGAACCCCCGACCTCGGGAT consensus GTA G TC T TAGTA TTCCG sequence T AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:161764886-161765386 + 5 2.44e-15 tggc caggctggtctcgaactcctgacctcgtgat ccgcccgcct chr14:102316880-10231738 - 50 9.42e-14 TAGCCTGGCC CGTACGGGGATCGAACCCGCGACCTTGGCGT TATTAGCACC chr12:120292125-12029262 - 55 9.42e-14 CCATCTTGTC CAGGCTGGTCTTGAACTCCTGACCTCGTGAT CCACCCGCCT chr17:8226755-8227255 + 41 3.34e-13 CCCACtggcc cgtacggggttcgaacccgcgaccttggcgt tattagcacc chr21:36989335-36989835 + 2 3.53e-12 c caggctggtctcgaactcctgacctcaagtg atctgcctgc chr1:161540056-161540556 - 23 3.53e-12 ACTTCCGTCC CTGGGTGGGATCGAACCACCAACCTTTCGGT TAACAGCCGA chr19:39411907-39412407 + 66 5.28e-12 AAAAgtgctc caggtgaggatcgaactcacaacctcggcat tgct chr17:82494458-82494958 + 68 1.03e-11 GTCTAtagca gaggatggtttcgatccatcgacctctgggt ta chr14:20662961-20663461 + 36 1.19e-11 GCACTtcctt cgagccggaatcgaaccagcgacctaaggat gtccgcaaat chr6:26571599-26572099 + 70 1.30e-10 AAAACtggag aatgcgggcatcgatcccgctacctctcgca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:161764886-161765386 2.4e-15 4_[+8]_65 chr14:102316880-10231738 9.4e-14 49_[-8]_20 chr12:120292125-12029262 9.4e-14 54_[-8]_15 chr17:8226755-8227255 3.3e-13 40_[+8]_29 chr21:36989335-36989835 3.5e-12 1_[+8]_68 chr1:161540056-161540556 3.5e-12 22_[-8]_47 chr19:39411907-39412407 5.3e-12 65_[+8]_4 chr17:82494458-82494958 1e-11 67_[+8]_2 chr14:20662961-20663461 1.2e-11 35_[+8]_34 chr6:26571599-26572099 1.3e-10 69_[+8] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRKGCKGGKMTCGAACYCSCGACCTYKGGRT width=31 seqs=10 chr1:161764886-161765386 ( 5) CAGGCTGGTCTCGAACTCCTGACCTCGTGAT 1 chr14:102316880-10231738 ( 50) CGTACGGGGATCGAACCCGCGACCTTGGCGT 1 chr12:120292125-12029262 ( 55) CAGGCTGGTCTTGAACTCCTGACCTCGTGAT 1 chr17:8226755-8227255 ( 41) CGTACGGGGTTCGAACCCGCGACCTTGGCGT 1 chr21:36989335-36989835 ( 2) CAGGCTGGTCTCGAACTCCTGACCTCAAGTG 1 chr1:161540056-161540556 ( 23) CTGGGTGGGATCGAACCACCAACCTTTCGGT 1 chr19:39411907-39412407 ( 66) CAGGTGAGGATCGAACTCACAACCTCGGCAT 1 chr17:82494458-82494958 ( 68) GAGGATGGTTTCGATCCATCGACCTCTGGGT 1 chr14:20662961-20663461 ( 36) CGAGCCGGAATCGAACCAGCGACCTAAGGAT 1 chr6:26571599-26572099 ( 70) AATGCGGGCATCGATCCCGCTACCTCTCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 11.4701 E= 4.9e-014 -123 159 -140 -997 135 -997 18 -123 -123 -997 118 35 -23 -997 159 -997 -123 140 -140 -123 -997 -140 59 109 -123 -997 176 -997 -997 -997 191 -997 -123 -140 59 77 109 18 -997 -23 -997 -997 -997 209 -997 176 -997 -123 -997 -997 191 -997 209 -997 -997 -997 177 -997 -997 -23 -997 191 -997 -997 -997 118 -997 77 35 140 -997 -997 -123 59 59 -123 -997 140 -997 35 -23 -997 140 -123 209 -997 -997 -997 -997 191 -997 -997 -997 191 -997 -997 -997 -997 -997 209 -123 118 -997 35 -23 -997 91 35 -123 -41 91 -23 -997 18 140 -997 77 -140 59 -123 -123 -997 -140 177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 10 E= 4.9e-014 0.100000 0.800000 0.100000 0.000000 0.600000 0.000000 0.300000 0.100000 0.100000 0.000000 0.600000 0.300000 0.200000 0.000000 0.800000 0.000000 0.100000 0.700000 0.100000 0.100000 0.000000 0.100000 0.400000 0.500000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.100000 0.400000 0.400000 0.500000 0.300000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.300000 0.700000 0.000000 0.000000 0.100000 0.400000 0.400000 0.100000 0.000000 0.700000 0.000000 0.300000 0.200000 0.000000 0.700000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.100000 0.600000 0.000000 0.300000 0.200000 0.000000 0.500000 0.300000 0.100000 0.200000 0.500000 0.200000 0.000000 0.300000 0.700000 0.000000 0.400000 0.100000 0.400000 0.100000 0.100000 0.000000 0.100000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRKGCKGGKMTCGAACYCSCGACCTYKGGRT MEME-8 regular expression -------------------------------------------------------------------------------- C[AG][GT][GA]C[TG]GG[GT][ACT]TCGA[AT]C[CT][CA][CG][CT][GA]ACCT[CT][GTA][GCT][GC][AG]T -------------------------------------------------------------------------------- Time 2427.15 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGACRTCACC MEME-9 width = 12 sites = 57 llr = 579 E-value = 8.3e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGACRTCACC MEME-9 Description -------------------------------------------------------------------------------- Simplified A 28::a14:2a:1 pos.-specific C 21:1:51:8:86 probability G 61:9:25::::: matrix T ::a1:2:a::22 bits 2.1 * 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.3 *** **** Entropy 1.0 **** **** (14.7 bits) 0.8 **** **** 0.6 ***** ****** 0.4 ***** ****** 0.2 ************ 0.0 ------------ Multilevel GATGACGTCACC consensus A A TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGACRTCACC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr17:78558303-78558803 + 9 1.24e-07 CATGGGTG GATGACATCACC CTCATGGGTG chr10:94673532-94674032 + 3 1.24e-07 ca gatgacatcacc ttggcccagg chr8:144456555-144457055 + 56 1.24e-07 CACATGGGGG GATGACATCACC GGGGGATGAC chr5:65035526-65036026 - 76 1.24e-07 TCTGAGCAGA GATGACGTCACC CTAAGGAAAC chr21:34812443-34812943 + 71 5.78e-07 TACTTCAATA GATGAGGTCACC CTGAGAAAGA chr1:232670259-232670759 - 77 5.78e-07 ATTGCTGCAG GATGAGGTCACC TGTCTCATGT chr17:74514075-74514575 - 64 8.13e-07 TCGTCGATCA CATGACATCACC TATCACATGA chr17:74514279-74514779 - 69 8.13e-07 TCACCCATCA CATGACATCACC TGTCACATGA chr17:74514503-74515003 - 76 8.13e-07 CCACCCATCA CATGACATCACC TGTCACATGA chr5:139517800-139518300 - 63 1.03e-06 CCCCGGGCCG GATGAAGTCACC GGCCGGAGGC chr1:234723978-234724478 - 37 1.64e-06 CAACTGTTCC AATGACATCATC CCTGCTGCAT chr22:31055476-31055976 + 21 1.96e-06 CCTCGCTGGG CATGATGTCACC ACAATTGTGC chr15:70494068-70494568 + 83 2.84e-06 gacaacccgg gatgaggtcatc actatc chr1:68216982-68217482 - 87 2.84e-06 CA CATGAGGTCACC AGGCTTCAAG chr6:52243279-52243779 - 5 2.84e-06 GGATGGAAGA AATGAAATCACC CAGT chr22:37905056-37905556 + 10 3.25e-06 ATGGGTCAG GGTGACATCACC ACCTCTGCAG chr3:5023237-5023737 - 84 3.25e-06 TGGCA GGTGACGTCACC ATGAGGTGAC chr1:31387504-31388004 + 11 3.25e-06 CATCCCCACG GATGACCTCACC ATCCACACCC chr10:75358885-75359385 - 47 3.55e-06 GAGGTTTGGG GATGATGTAACC ACTCTGCAGT chr19:1021419-1021919 + 62 3.95e-06 CGGATCCTGC CATGACGTCACA GGGCCAGTAA chr10:23408548-23409048 - 9 3.95e-06 ATTGGCTGCT GATGACATCATA GAGACTTC chr7:116218118-116218618 - 85 5.79e-06 GAAA CATGATATCACT TTATCATCAA chr19:36572741-36573241 + 51 5.79e-06 GCTGTCACAC GATCACGTCACC GTAGACCAGG chr1:233112840-233113340 - 79 5.79e-06 GTGATGACAA GCTGATGTCACC CAACTGGCCA chr10:12448706-12449206 - 16 6.19e-06 CCATCACATT GATGAAGTAACC AGGGCACAGA chr1:175841776-175842276 + 6 7.21e-06 TAGAG GCTGAGGTCACC ATGGAGGTGT chr21:34526747-34527247 - 47 7.21e-06 TGACTAAGGT GTTGACGTCACC TCTTTCCAGT chr3:194572196-194572696 - 54 8.76e-06 AGTGAGGCAG GGTGAGGTCACC CCAGAGCTCA chr3:71102175-71102675 + 23 8.76e-06 ATAGTTTGCT CATGATATCACA GCTCAGTAAC chr22:19984260-19984760 + 28 8.76e-06 AAAAACGAGG GATGACTTCACC CGGGTGGCAG chr15:67792449-67792949 - 13 9.48e-06 GATGACATCC AATGACATAATC TTGGAATGAC chr21:33078958-33079458 + 34 1.05e-05 AGGCTGGGTG AATGAAGTCACA GGCTGAGTCA chr10:77350576-77351076 + 21 1.15e-05 AATTCACTGT GATGACCTCACA ATCATGCCTG chr5:74632237-74632737 + 55 1.15e-05 TCCAGGAAAG CATGACATAACT CAGAACTCTG chr12:42569472-42569972 - 75 1.15e-05 CTGTTCCAGA GATTATGTCACC ACAAAGGAGT chr1:219279330-219279830 + 53 1.36e-05 TTATTATAAC AATGAGATCATT GGAAGACCCA chr5:174505489-174505989 - 37 1.36e-05 TTAGTAGGTC AATGAGATCATT TTCGAAACTT chr7:158097533-158098033 + 43 1.63e-05 AATGGTCTCT AATGATGTCATA AGAAATAATG chrX:136065102-136065602 - 55 1.63e-05 GGTTGAATCC CATGATGTCATT CTGAAATGCA chr5:17305895-17306395 - 27 1.74e-05 ACACGCAACT GCTGACATCATT GCCTGAAGCA chr1:68384330-68384830 - 14 1.74e-05 GTGAATCATG GTTGAGATCACC ACTACTTAAT chr3:9731330-9731830 - 38 1.97e-05 GTTTCTGGAG ACTGAAGTCACC GTACTCGGGA chr1:93960711-93961211 - 62 1.97e-05 TTATCTCCAA GATGACATCCCC ACAGAGCTGA chr16:3020649-3021149 - 67 1.97e-05 ATAGCTGGGC ACTGAAGTCACC GGATGGAAGG chr12:120446170-12044667 + 40 2.12e-05 GGCGCACTCT GATGTCATCACT CTCAGGCGCG chr1:151494658-151495158 - 59 2.33e-05 CATTAACCTA AATCATGTCACC ACACTGTCAC chr3:156161112-156161612 + 87 2.89e-05 CCCTTTTATT GATGACCTAACT GA chr22:38032727-38033227 + 40 2.89e-05 CCACACGGAG CATGACATAATT CATGTCCCCC chr6:41767081-41767581 - 60 2.89e-05 CAGGCCAAGA GGTGACGTAACT TGCCTCAGGC chr6:15735643-15736143 + 75 3.12e-05 tataaaccac actgacatcatt tcctcccacg chr17:34981747-34982247 + 38 3.40e-05 CTTGAAAGAT AACGACGTCACC GATCATaata chr2:109214003-109214503 + 44 3.40e-05 AACCACAAGA GATAAGATCACC CAAAGGGAGT chr9:85743210-85743710 - 89 3.98e-05 . AGTGATGTCACA TTCCCAGGGG chr6:111568318-111568818 - 63 3.98e-05 AGTGCAGCTG AATCACGTAACC CCTCCCCAGG chr2:53987438-53987938 + 3 3.98e-05 ct gatgttgtcact gctttttatt chr7:152314088-152314588 + 15 4.22e-05 GCACTTGAGT GATTACATCATA ACCCTCAAGA chr12:121719841-12172034 + 64 4.22e-05 ggcacagagg gattacataact cagctaataa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGACRTCACC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:78558303-78558803 1.2e-07 8_[+9]_80 chr10:94673532-94674032 1.2e-07 2_[+9]_86 chr8:144456555-144457055 1.2e-07 55_[+9]_33 chr5:65035526-65036026 1.2e-07 75_[-9]_13 chr21:34812443-34812943 5.8e-07 70_[+9]_18 chr1:232670259-232670759 5.8e-07 76_[-9]_12 chr17:74514075-74514575 8.1e-07 63_[-9]_25 chr17:74514279-74514779 8.1e-07 68_[-9]_20 chr17:74514503-74515003 8.1e-07 75_[-9]_13 chr5:139517800-139518300 1e-06 62_[-9]_26 chr1:234723978-234724478 1.6e-06 36_[-9]_52 chr22:31055476-31055976 2e-06 20_[+9]_68 chr15:70494068-70494568 2.8e-06 82_[+9]_6 chr1:68216982-68217482 2.8e-06 86_[-9]_2 chr6:52243279-52243779 2.8e-06 4_[-9]_84 chr22:37905056-37905556 3.2e-06 9_[+9]_79 chr3:5023237-5023737 3.2e-06 83_[-9]_5 chr1:31387504-31388004 3.2e-06 10_[+9]_78 chr10:75358885-75359385 3.6e-06 46_[-9]_42 chr19:1021419-1021919 3.9e-06 61_[+9]_27 chr10:23408548-23409048 3.9e-06 8_[-9]_80 chr7:116218118-116218618 5.8e-06 84_[-9]_4 chr19:36572741-36573241 5.8e-06 50_[+9]_38 chr1:233112840-233113340 5.8e-06 78_[-9]_10 chr10:12448706-12449206 6.2e-06 15_[-9]_73 chr1:175841776-175842276 7.2e-06 5_[+9]_83 chr21:34526747-34527247 7.2e-06 46_[-9]_42 chr3:194572196-194572696 8.8e-06 53_[-9]_35 chr3:71102175-71102675 8.8e-06 22_[+9]_66 chr22:19984260-19984760 8.8e-06 27_[+9]_61 chr15:67792449-67792949 9.5e-06 12_[-9]_76 chr21:33078958-33079458 1e-05 33_[+9]_55 chr10:77350576-77351076 1.2e-05 20_[+9]_68 chr5:74632237-74632737 1.2e-05 54_[+9]_34 chr12:42569472-42569972 1.2e-05 74_[-9]_14 chr1:219279330-219279830 1.4e-05 52_[+9]_36 chr5:174505489-174505989 1.4e-05 36_[-9]_52 chr7:158097533-158098033 1.6e-05 42_[+9]_46 chrX:136065102-136065602 1.6e-05 54_[-9]_34 chr5:17305895-17306395 1.7e-05 26_[-9]_62 chr1:68384330-68384830 1.7e-05 13_[-9]_75 chr3:9731330-9731830 2e-05 37_[-9]_51 chr1:93960711-93961211 2e-05 61_[-9]_27 chr16:3020649-3021149 2e-05 66_[-9]_22 chr12:120446170-12044667 2.1e-05 39_[+9]_49 chr1:151494658-151495158 2.3e-05 58_[-9]_30 chr3:156161112-156161612 2.9e-05 86_[+9]_2 chr22:38032727-38033227 2.9e-05 39_[+9]_49 chr6:41767081-41767581 2.9e-05 59_[-9]_29 chr6:15735643-15736143 3.1e-05 74_[+9]_14 chr17:34981747-34982247 3.4e-05 37_[+9]_51 chr2:109214003-109214503 3.4e-05 43_[+9]_45 chr9:85743210-85743710 4e-05 88_[-9] chr6:111568318-111568818 4e-05 62_[-9]_26 chr2:53987438-53987938 4e-05 2_[+9]_86 chr7:152314088-152314588 4.2e-05 14_[+9]_74 chr12:121719841-12172034 4.2e-05 63_[+9]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGACRTCACC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGACRTCACC width=12 seqs=57 chr17:78558303-78558803 ( 9) GATGACATCACC 1 chr10:94673532-94674032 ( 3) GATGACATCACC 1 chr8:144456555-144457055 ( 56) GATGACATCACC 1 chr5:65035526-65036026 ( 76) GATGACGTCACC 1 chr21:34812443-34812943 ( 71) GATGAGGTCACC 1 chr1:232670259-232670759 ( 77) GATGAGGTCACC 1 chr17:74514075-74514575 ( 64) CATGACATCACC 1 chr17:74514279-74514779 ( 69) CATGACATCACC 1 chr17:74514503-74515003 ( 76) CATGACATCACC 1 chr5:139517800-139518300 ( 63) GATGAAGTCACC 1 chr1:234723978-234724478 ( 37) AATGACATCATC 1 chr22:31055476-31055976 ( 21) CATGATGTCACC 1 chr15:70494068-70494568 ( 83) GATGAGGTCATC 1 chr1:68216982-68217482 ( 87) CATGAGGTCACC 1 chr6:52243279-52243779 ( 5) AATGAAATCACC 1 chr22:37905056-37905556 ( 10) GGTGACATCACC 1 chr3:5023237-5023737 ( 84) GGTGACGTCACC 1 chr1:31387504-31388004 ( 11) GATGACCTCACC 1 chr10:75358885-75359385 ( 47) GATGATGTAACC 1 chr19:1021419-1021919 ( 62) CATGACGTCACA 1 chr10:23408548-23409048 ( 9) GATGACATCATA 1 chr7:116218118-116218618 ( 85) CATGATATCACT 1 chr19:36572741-36573241 ( 51) GATCACGTCACC 1 chr1:233112840-233113340 ( 79) GCTGATGTCACC 1 chr10:12448706-12449206 ( 16) GATGAAGTAACC 1 chr1:175841776-175842276 ( 6) GCTGAGGTCACC 1 chr21:34526747-34527247 ( 47) GTTGACGTCACC 1 chr3:194572196-194572696 ( 54) GGTGAGGTCACC 1 chr3:71102175-71102675 ( 23) CATGATATCACA 1 chr22:19984260-19984760 ( 28) GATGACTTCACC 1 chr15:67792449-67792949 ( 13) AATGACATAATC 1 chr21:33078958-33079458 ( 34) AATGAAGTCACA 1 chr10:77350576-77351076 ( 21) GATGACCTCACA 1 chr5:74632237-74632737 ( 55) CATGACATAACT 1 chr12:42569472-42569972 ( 75) GATTATGTCACC 1 chr1:219279330-219279830 ( 53) AATGAGATCATT 1 chr5:174505489-174505989 ( 37) AATGAGATCATT 1 chr7:158097533-158098033 ( 43) AATGATGTCATA 1 chrX:136065102-136065602 ( 55) CATGATGTCATT 1 chr5:17305895-17306395 ( 27) GCTGACATCATT 1 chr1:68384330-68384830 ( 14) GTTGAGATCACC 1 chr3:9731330-9731830 ( 38) ACTGAAGTCACC 1 chr1:93960711-93961211 ( 62) GATGACATCCCC 1 chr16:3020649-3021149 ( 67) ACTGAAGTCACC 1 chr12:120446170-12044667 ( 40) GATGTCATCACT 1 chr1:151494658-151495158 ( 59) AATCATGTCACC 1 chr3:156161112-156161612 ( 87) GATGACCTAACT 1 chr22:38032727-38033227 ( 40) CATGACATAATT 1 chr6:41767081-41767581 ( 60) GGTGACGTAACT 1 chr6:15735643-15736143 ( 75) ACTGACATCATT 1 chr17:34981747-34982247 ( 38) AACGACGTCACC 1 chr2:109214003-109214503 ( 44) GATAAGATCACC 1 chr9:85743210-85743710 ( 89) AGTGATGTCACA 1 chr6:111568318-111568818 ( 63) AATCACGTAACC 1 chr2:53987438-53987938 ( 3) GATGTTGTCACT 1 chr7:152314088-152314588 ( 15) GATTACATCATA 1 chr12:121719841-12172034 ( 64) GATTACATAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGACRTCACC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.107 E= 8.3e-014 6 -46 108 -1248 172 -133 -160 -274 -1248 -391 -1248 206 -374 -233 173 -216 204 -1248 -1248 -274 -116 99 -60 -28 90 -233 89 -374 -1248 -1248 -1248 209 -57 167 -1248 -1248 206 -391 -1248 -1248 -1248 157 -1248 -16 -74 125 -1248 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGACRTCACC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 57 E= 8.3e-014 0.245614 0.192982 0.561404 0.000000 0.771930 0.105263 0.087719 0.035088 0.000000 0.017544 0.000000 0.982456 0.017544 0.052632 0.877193 0.052632 0.964912 0.000000 0.000000 0.035088 0.105263 0.526316 0.175439 0.192982 0.438596 0.052632 0.491228 0.017544 0.000000 0.000000 0.000000 1.000000 0.157895 0.842105 0.000000 0.000000 0.982456 0.017544 0.000000 0.000000 0.000000 0.789474 0.000000 0.210526 0.140351 0.631579 0.000000 0.228070 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGACRTCACC MEME-9 regular expression -------------------------------------------------------------------------------- [GA]ATGAC[GA]TCA[CT][CT] -------------------------------------------------------------------------------- Time 2703.60 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGACTCAB MEME-10 width = 9 sites = 64 llr = 608 E-value = 1.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-10 Description -------------------------------------------------------------------------------- Simplified A 5::a::2a: pos.-specific C 2:::a:8:3 probability G 3:8:::::3 matrix T :a2::a::4 bits 2.1 * * * * 1.9 * *** * 1.7 * *** * 1.5 * *** * Relative 1.3 ******* Entropy 1.0 ******* (13.7 bits) 0.8 ******* 0.6 ******* 0.4 ********* 0.2 ********* 0.0 --------- Multilevel ATGACTCAT consensus G T C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr22:24727074-24727574 - 32 3.13e-06 GTAATTACAA ATGACTCAT TTGGAAAACT chr11:36149620-36150120 + 17 3.13e-06 TCTGTTCctc atgactcat gaatgtgttc chr5:124629079-124629579 - 33 3.13e-06 TGAAGCAGGG ATGACTCAT GGAGAGGCCC chr2:136248185-136248685 - 38 3.13e-06 ATTCCCACTT ATGACTCAT GCTTCCATTC chr9:109816410-109816910 - 21 3.13e-06 GTTTGTGTTC ATGACTCAT TCAACCCTAT chr5:174371549-174372049 - 44 3.13e-06 CAACGACCAA ATGACTCAT TCTCTAAAGA chr22:40711488-40711988 - 14 3.13e-06 TAGCCTCTCG ATGACTCAT GTCTCTGTAA chr16:74577932-74578432 + 58 3.13e-06 TGAGTATGTG ATGACTCAT GACTGATGAA chr1:234700142-234700642 + 57 1.02e-05 AGGTTAATGG ATGACTCAG AGGCATTATT chr16:4944703-4945203 - 63 1.02e-05 CAGGCAGAGC ATGACTCAC CGTAGACCCT chr12:114914239-11491473 - 14 1.02e-05 ATGGAGCGAT ATGACTCAC TGGATCATAA chr22:35364129-35364629 - 90 1.02e-05 TC ATGACTCAC TGTTTATGTA chr19:40219756-40220256 - 57 1.02e-05 TCATGATCAC ATGACTCAG AGTCTAATGG chr5:124908880-124909380 - 2 1.02e-05 ACAAAACCAG ATGACTCAC T chr6:1872541-1873041 + 35 1.02e-05 AAACCTTTTA ATGACTCAC TTGAGATGAC chr1:229230482-229230982 + 57 1.02e-05 AATTGACATT ATGACTCAC CCCTACCTCC chr11:9565953-9566453 - 11 1.02e-05 CTGTGTTTTG ATGACTCAG TGGTGAGTCA chr21:33078958-33079458 - 48 1.02e-05 TGTGCAGAGG ATGACTCAG CCTGTGACTT chr10:63707258-63707758 + 80 1.37e-05 ATGATGCACA GTGACTCAT TTCCCTATGT chr13:87123947-87124447 - 1 1.37e-05 ATTATAAATG GTGACTCAT chr1:235504713-235505213 + 56 1.37e-05 GCCTGGAGCG GTGACTCAT CAGGGATTAG chr10:11539260-11539760 - 12 1.37e-05 CTTTTAAGCT GTGACTCAT CTTACACATA chr3:4741631-4742131 - 26 1.37e-05 CCGCTCAGAA GTGACTCAT TCCTGACTTC chr4:128393157-128393657 - 14 2.17e-05 TATTTCATGG GTGACTCAC TTATAAGCTA chr19:40920911-40921411 - 85 2.17e-05 ACACACA GTGACTCAG TGTTTACCCT chr1:232704722-232705222 + 61 2.17e-05 CAGCTGCTAA GTGACTCAG CACTGCATCA chr6:111568318-111568818 + 34 2.17e-05 ACTGGAATGG GTGACTCAG GGAGAGTGTC chr3:100002823-100003323 + 46 2.17e-05 TGATGTCTGT GTGACTCAC ATACTGAGGT chr5:125485093-125485593 + 16 2.17e-05 AAGTCACTCC GTGACTCAC ACGAATGGCT chr11:9759554-9760054 - 15 2.17e-05 GGAAGTGGTT GTGACTCAG CTGCACATGG chr1:202200182-202200682 - 90 2.17e-05 TA GTGACTCAC TAGCCTAAGG chr7:101138413-101138913 + 19 2.17e-05 CAATTACAGG GTGACTCAC AGCCGCATTG chr1:183060417-183060917 + 7 2.52e-05 acatgt ctgactcat aattatcatt chr22:19984260-19984760 - 54 2.52e-05 TGATCACTGG CTGACTCAT GCACCTGCCA chr12:25615014-25615514 - 27 2.52e-05 CACCATGTTG CTGACTCAT GGTCAGCATG chr5:88516262-88516762 + 88 2.80e-05 TGTAAGTGCA ATTACTCAT GGAT chr2:53987438-53987938 - 83 2.80e-05 TTCAACATC ATTACTCAT TAGAAGAATG chr14:69999211-69999711 - 77 2.80e-05 ACGTTAGTGG ATTACTCAT TCTTCCTCCC chr7:80876831-80877331 - 87 3.88e-05 CAAGG CTGACTCAG AAGCAAACTG chr10:68153487-68153987 - 44 3.88e-05 ACTGGTGGCT CTGACTCAG AAATTTGCTA chr13:110870184-11087068 + 15 3.88e-05 TGCTCCTAGA CTGACTCAG CGCTGGTCAT chr4:53943645-53944145 + 13 3.88e-05 TTACCTAGTC ATGACTAAT GAAGCTGTCA chr19:4575286-4575786 - 68 3.88e-05 TTCCTGAGCC CTGACTCAC CAGGACTTGT chr10:72097725-72098225 + 12 3.88e-05 GATAAGGCTC CTGACTCAC AAGTGATTCA chr6:158040256-158040756 + 29 3.88e-05 CTCTGCAGTG CTGACTCAC CACACAGAAA chr7:120806666-120807166 - 25 4.50e-05 TATGGGCATT ATTACTCAG AATACTTCCA chr14:34700055-34700555 - 50 4.50e-05 CTGTTTCCCA ATTACTCAG CTCAGACCAT chrX:136065102-136065602 - 15 4.50e-05 ACAGGGTCAC ATTACTCAG AGAAAAACAG chr10:22427904-22428404 - 16 4.50e-05 TGGGATTTTA ATTACTCAG ACATCTGTTT chr5:175378442-175378942 - 34 5.13e-05 TTTATGGACT ATGACTAAC CAGTGGAACT chr6:26285228-26285728 + 70 5.13e-05 ACGGCCAGAC ATGACTAAG CAACTTCTAA chr5:14156509-14157009 - 80 5.13e-05 TTTTGTTTGG ATGACTAAC TGACAAGGCA chr21:34526747-34527247 - 61 5.13e-05 CATAGGGAAA ATGACTAAG GTGTTGACGT chr5:124655889-124656389 - 42 5.76e-05 TATGTTCAGG GTGACTAAT CGCAGCACTG chr1:67686588-67687088 + 87 5.76e-05 ACTGCCTCCC GTGACTAAT TCCTT chr22:42615230-42615730 + 62 6.46e-05 TGTTTTCTCC GTTACTCAG GCTGCCAGTT chr21:42010029-42010529 + 14 6.46e-05 GGGCGTGACA GTTACTCAC CGGTCTTCAG chr15:98896865-98897365 - 90 7.17e-05 AT GTGACTAAC AAAAAGATGA chr20:53899460-53899960 + 85 7.17e-05 CAGAGCCAGG GTGACTAAG TCATCAC chr20:44728744-44729244 - 58 7.17e-05 TCTCAGATGG GTGACTAAG TCCTCTCATT chr1:150009618-150010118 + 13 7.49e-05 CAGCCCCCGG CTTACTCAT CATCAGCTTC chr1:64183845-64184345 + 42 8.75e-05 GTATGAATTG CTTACTCAC AAATGAGTAC chr1:228861080-228861580 - 32 8.75e-05 CTCTGCACTA CTTACTCAC CCAGTGCTTA chr5:136123131-136123631 - 59 8.75e-05 ATATGGTGGC ATTACTAAT GTGCCACATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:24727074-24727574 3.1e-06 31_[-10]_60 chr11:36149620-36150120 3.1e-06 16_[+10]_75 chr5:124629079-124629579 3.1e-06 32_[-10]_59 chr2:136248185-136248685 3.1e-06 37_[-10]_54 chr9:109816410-109816910 3.1e-06 20_[-10]_71 chr5:174371549-174372049 3.1e-06 43_[-10]_48 chr22:40711488-40711988 3.1e-06 13_[-10]_78 chr16:74577932-74578432 3.1e-06 57_[+10]_34 chr1:234700142-234700642 1e-05 56_[+10]_35 chr16:4944703-4945203 1e-05 62_[-10]_29 chr12:114914239-11491473 1e-05 13_[-10]_78 chr22:35364129-35364629 1e-05 89_[-10]_2 chr19:40219756-40220256 1e-05 56_[-10]_35 chr5:124908880-124909380 1e-05 1_[-10]_90 chr6:1872541-1873041 1e-05 34_[+10]_57 chr1:229230482-229230982 1e-05 56_[+10]_35 chr11:9565953-9566453 1e-05 10_[-10]_81 chr21:33078958-33079458 1e-05 47_[-10]_44 chr10:63707258-63707758 1.4e-05 79_[+10]_12 chr13:87123947-87124447 1.4e-05 [-10]_91 chr1:235504713-235505213 1.4e-05 55_[+10]_36 chr10:11539260-11539760 1.4e-05 11_[-10]_80 chr3:4741631-4742131 1.4e-05 25_[-10]_66 chr4:128393157-128393657 2.2e-05 13_[-10]_78 chr19:40920911-40921411 2.2e-05 84_[-10]_7 chr1:232704722-232705222 2.2e-05 60_[+10]_31 chr6:111568318-111568818 2.2e-05 33_[+10]_58 chr3:100002823-100003323 2.2e-05 45_[+10]_46 chr5:125485093-125485593 2.2e-05 15_[+10]_76 chr11:9759554-9760054 2.2e-05 14_[-10]_77 chr1:202200182-202200682 2.2e-05 89_[-10]_2 chr7:101138413-101138913 2.2e-05 18_[+10]_73 chr1:183060417-183060917 2.5e-05 6_[+10]_85 chr22:19984260-19984760 2.5e-05 53_[-10]_38 chr12:25615014-25615514 2.5e-05 26_[-10]_65 chr5:88516262-88516762 2.8e-05 87_[+10]_4 chr2:53987438-53987938 2.8e-05 82_[-10]_9 chr14:69999211-69999711 2.8e-05 76_[-10]_15 chr7:80876831-80877331 3.9e-05 86_[-10]_5 chr10:68153487-68153987 3.9e-05 43_[-10]_48 chr13:110870184-11087068 3.9e-05 14_[+10]_77 chr4:53943645-53944145 3.9e-05 12_[+10]_79 chr19:4575286-4575786 3.9e-05 67_[-10]_24 chr10:72097725-72098225 3.9e-05 11_[+10]_80 chr6:158040256-158040756 3.9e-05 28_[+10]_63 chr7:120806666-120807166 4.5e-05 24_[-10]_67 chr14:34700055-34700555 4.5e-05 49_[-10]_42 chrX:136065102-136065602 4.5e-05 14_[-10]_77 chr10:22427904-22428404 4.5e-05 15_[-10]_76 chr5:175378442-175378942 5.1e-05 33_[-10]_58 chr6:26285228-26285728 5.1e-05 69_[+10]_22 chr5:14156509-14157009 5.1e-05 79_[-10]_12 chr21:34526747-34527247 5.1e-05 60_[-10]_31 chr5:124655889-124656389 5.8e-05 41_[-10]_50 chr1:67686588-67687088 5.8e-05 86_[+10]_5 chr22:42615230-42615730 6.5e-05 61_[+10]_30 chr21:42010029-42010529 6.5e-05 13_[+10]_78 chr15:98896865-98897365 7.2e-05 89_[-10]_2 chr20:53899460-53899960 7.2e-05 84_[+10]_7 chr20:44728744-44729244 7.2e-05 57_[-10]_34 chr1:150009618-150010118 7.5e-05 12_[+10]_79 chr1:64183845-64184345 8.8e-05 41_[+10]_50 chr1:228861080-228861580 8.8e-05 31_[-10]_60 chr5:136123131-136123631 8.8e-05 58_[-10]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGACTCAB width=9 seqs=64 chr22:24727074-24727574 ( 32) ATGACTCAT 1 chr11:36149620-36150120 ( 17) ATGACTCAT 1 chr5:124629079-124629579 ( 33) ATGACTCAT 1 chr2:136248185-136248685 ( 38) ATGACTCAT 1 chr9:109816410-109816910 ( 21) ATGACTCAT 1 chr5:174371549-174372049 ( 44) ATGACTCAT 1 chr22:40711488-40711988 ( 14) ATGACTCAT 1 chr16:74577932-74578432 ( 58) ATGACTCAT 1 chr1:234700142-234700642 ( 57) ATGACTCAG 1 chr16:4944703-4945203 ( 63) ATGACTCAC 1 chr12:114914239-11491473 ( 14) ATGACTCAC 1 chr22:35364129-35364629 ( 90) ATGACTCAC 1 chr19:40219756-40220256 ( 57) ATGACTCAG 1 chr5:124908880-124909380 ( 2) ATGACTCAC 1 chr6:1872541-1873041 ( 35) ATGACTCAC 1 chr1:229230482-229230982 ( 57) ATGACTCAC 1 chr11:9565953-9566453 ( 11) ATGACTCAG 1 chr21:33078958-33079458 ( 48) ATGACTCAG 1 chr10:63707258-63707758 ( 80) GTGACTCAT 1 chr13:87123947-87124447 ( 1) GTGACTCAT 1 chr1:235504713-235505213 ( 56) GTGACTCAT 1 chr10:11539260-11539760 ( 12) GTGACTCAT 1 chr3:4741631-4742131 ( 26) GTGACTCAT 1 chr4:128393157-128393657 ( 14) GTGACTCAC 1 chr19:40920911-40921411 ( 85) GTGACTCAG 1 chr1:232704722-232705222 ( 61) GTGACTCAG 1 chr6:111568318-111568818 ( 34) GTGACTCAG 1 chr3:100002823-100003323 ( 46) GTGACTCAC 1 chr5:125485093-125485593 ( 16) GTGACTCAC 1 chr11:9759554-9760054 ( 15) GTGACTCAG 1 chr1:202200182-202200682 ( 90) GTGACTCAC 1 chr7:101138413-101138913 ( 19) GTGACTCAC 1 chr1:183060417-183060917 ( 7) CTGACTCAT 1 chr22:19984260-19984760 ( 54) CTGACTCAT 1 chr12:25615014-25615514 ( 27) CTGACTCAT 1 chr5:88516262-88516762 ( 88) ATTACTCAT 1 chr2:53987438-53987938 ( 83) ATTACTCAT 1 chr14:69999211-69999711 ( 77) ATTACTCAT 1 chr7:80876831-80877331 ( 87) CTGACTCAG 1 chr10:68153487-68153987 ( 44) CTGACTCAG 1 chr13:110870184-11087068 ( 15) CTGACTCAG 1 chr4:53943645-53944145 ( 13) ATGACTAAT 1 chr19:4575286-4575786 ( 68) CTGACTCAC 1 chr10:72097725-72098225 ( 12) CTGACTCAC 1 chr6:158040256-158040756 ( 29) CTGACTCAC 1 chr7:120806666-120807166 ( 25) ATTACTCAG 1 chr14:34700055-34700555 ( 50) ATTACTCAG 1 chrX:136065102-136065602 ( 15) ATTACTCAG 1 chr10:22427904-22428404 ( 16) ATTACTCAG 1 chr5:175378442-175378942 ( 34) ATGACTAAC 1 chr6:26285228-26285728 ( 70) ATGACTAAG 1 chr5:14156509-14157009 ( 80) ATGACTAAC 1 chr21:34526747-34527247 ( 61) ATGACTAAG 1 chr5:124655889-124656389 ( 42) GTGACTAAT 1 chr1:67686588-67687088 ( 87) GTGACTAAT 1 chr22:42615230-42615730 ( 62) GTTACTCAG 1 chr21:42010029-42010529 ( 14) GTTACTCAC 1 chr15:98896865-98897365 ( 90) GTGACTAAC 1 chr20:53899460-53899960 ( 85) GTGACTAAG 1 chr20:44728744-44729244 ( 58) GTGACTAAG 1 chr1:150009618-150010118 ( 13) CTTACTCAT 1 chr1:64183845-64184345 ( 42) CTTACTCAC 1 chr1:228861080-228861580 ( 32) CTTACTCAC 1 chr5:136123131-136123631 ( 59) ATTACTAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 11.4888 E= 1.2e-009 104 -50 31 -1264 -1264 -1264 -1264 209 -1264 -1264 159 -21 209 -1264 -1264 -1264 -1264 191 -1264 -1264 -1264 -1264 -1264 209 -45 164 -1264 -1264 209 -1264 -1264 -1264 -1264 24 24 68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 64 E= 1.2e-009 0.484375 0.187500 0.328125 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.796875 0.203125 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.171875 0.828125 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.312500 0.312500 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-10 regular expression -------------------------------------------------------------------------------- [AG]T[GT]ACTCA[TCG] -------------------------------------------------------------------------------- Time 2972.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:48716969-48717469 1.79e-36 3_[-3(3.50e-15)]_5_[+2(1.64e-25)]_\ 18 chr1:151494658-151495158 2.31e-02 58_[-9(2.33e-05)]_30 chr12:42569472-42569972 6.34e-02 7_[+7(3.90e-05)]_45_[-9(1.15e-05)]_\ 14 chr6:8939580-8940080 3.50e-01 100 chr21:38913546-38914046 3.29e-04 18_[+6(2.31e-05)]_15_[+6(3.22e-07)]_\ 7_[+1(1.83e-08)]_5 chr6:139152291-139152791 1.40e-01 24_[+6(1.12e-05)]_64 chr17:44820544-44821044 9.09e-01 100 chr17:8210264-8210764 4.47e-01 100 chr10:68106573-68107073 9.93e-02 35_[-6(9.38e-05)]_53 chr14:69999211-69999711 8.37e-02 76_[-10(2.80e-05)]_15 chr15:72473772-72474272 6.17e-01 100 chr19:1652586-1653086 2.55e-01 29_[-4(4.01e-05)]_49 chr2:15243694-15244194 3.97e-01 100 chr7:100082160-100082660 6.62e-27 7_[+2(2.82e-25)]_11_[+6(3.39e-06)]_\ 27 chr1:80403349-80403849 4.19e-01 100 chr7:27165498-27165998 1.54e-01 [-6(6.24e-06)]_88 chr21:42010029-42010529 2.91e-03 12_[-2(3.75e-05)]_19_[+4(9.42e-06)]_\ 4 chr2:241102094-241102594 3.28e-01 46_[+4(1.80e-05)]_32 chr12:56190202-56190702 1.99e-03 47_[+7(1.14e-07)]_31 chr14:104275895-10427639 1.49e-22 16_[+2(6.90e-24)]_11_[+6(3.39e-06)]_\ 18 chr20:34955307-34955807 5.31e-01 100 chr3:4741631-4742131 4.98e-03 25_[-10(1.37e-05)]_66 chr6:107653225-107653725 4.04e-02 37_[-1(4.99e-05)]_32 chr17:43483566-43484066 2.07e-01 100 chr15:50354912-50355412 4.77e-01 100 chr10:102420964-10242146 5.40e-03 58_[-4(2.89e-06)]_20 chr1:224113831-224114331 1.10e-02 30_[-4(3.70e-06)]_48 chr15:67064076-67064576 9.13e-01 100 chr7:101138413-101138913 8.68e-03 18_[+10(2.17e-05)]_10_\ [+10(2.17e-05)]_[-1(4.37e-05)]_23 chr6:111552215-111552715 2.79e-01 100 chr8:10653175-10653675 1.57e-04 69_[+1(1.01e-08)] chr4:91064396-91064896 1.29e-01 68_[-3(7.05e-05)]_1 chr1:89719664-89720164 6.49e-01 100 chr12:49323176-49323676 3.93e-01 100 chr19:38831830-38832330 4.05e-02 81_[+6(2.31e-06)]_7 chr1:42335185-42335685 7.83e-01 100 chr16:3020649-3021149 2.60e-01 66_[-9(1.97e-05)]_22 chr2:231786202-231786702 1.36e-02 25_[-4(1.46e-05)]_53 chr17:38869981-38870481 8.97e-01 100 chr18:11688927-11689427 4.41e-01 100 chr1:202200182-202200682 1.65e-02 89_[-10(2.17e-05)]_2 chr1:31387504-31388004 4.74e-06 21_[+1(2.34e-07)]_5_[+1(5.45e-09)]_\ 12 chr1:42179941-42180441 8.53e-01 100 chr15:69143721-69144221 8.49e-01 100 chr22:44331998-44332498 8.90e-03 10_[+7(1.14e-07)]_[+7(4.20e-06)]_20_\ [+7(3.90e-06)]_4 chr20:38435112-38435612 4.26e-01 54_[-4(4.01e-05)]_24 chr6:27388712-27389212 7.01e-01 100 chr10:102855840-10285634 3.25e-01 100 chr1:236471605-236472105 6.95e-01 100 chr16:74577932-74578432 9.27e-03 57_[+10(3.13e-06)]_34 chr21:31558415-31558915 9.92e-02 45_[+4(1.80e-05)]_10_[+4(6.70e-06)]_\ 1 chr12:51024782-51025282 2.32e-01 9_[+6(9.23e-06)]_79 chr1:66924890-66925390 3.08e-02 75_[+4(9.42e-06)]_3 chr21:36069824-36070324 9.16e-01 100 chr20:54207693-54208193 2.95e-01 100 chr1:155050345-155050845 4.48e-02 14_[+4(5.30e-06)]_64 chr5:124661194-124661694 1.51e-02 37_[+4(1.62e-05)]_41 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chr1:228782568-228783068 2.61e-06 1_[-1(9.75e-06)]_7_[-6(2.92e-06)]_\ 10_[-1(1.26e-11)]_8 chr8:109611157-109611657 1.36e-03 41_[-7(6.47e-06)]_17_[+6(1.12e-05)]_\ 8 chr21:25607259-25607759 3.62e-02 45_[+4(2.89e-06)]_33 chr8:16825874-16826374 6.00e-11 5_[+1(1.76e-16)]_64 chr22:24727074-24727574 1.37e-01 31_[-10(3.13e-06)]_60 chr20:52972213-52972713 2.60e-13 7_[-1(2.20e-15)]_10_[-1(4.24e-09)]_\ 21 chr15:98896865-98897365 1.06e-01 89_[-10(7.17e-05)]_2 chr8:37360435-37360935 5.88e-01 100 chr10:94673532-94674032 1.04e-02 2_[+9(1.24e-07)]_24_[+9(5.07e-06)]_\ 3_[+9(4.54e-07)]_35 chr1:12478166-12478666 6.90e-01 100 chr19:36916396-36916896 1.21e-08 40_[-1(3.83e-13)]_29 chr12:25333747-25334247 6.56e-01 100 chr1:44213196-44213696 1.65e-01 26_[-6(6.45e-05)]_30_[+3(3.90e-05)]_\ 1 chr10:22552790-22553290 3.38e-01 36_[-9(6.03e-05)]_52 chr1:63523026-63523526 6.08e-03 78_[-4(1.31e-05)] chr16:12120395-12120895 1.67e-05 67_[-1(3.08e-09)]_2 chr6:24774920-24775420 7.56e-01 100 chrX:73943993-73944493 9.79e-01 100 chr19:39411907-39412407 3.68e-09 65_[+8(5.28e-12)]_4 chr15:70526426-70526926 5.64e-01 100 chr1:37989854-37990354 7.28e-01 100 chr5:57042470-57042970 2.59e-02 [+7(4.79e-07)]_78 chr16:30698044-30698544 3.88e-01 76_[-4(8.42e-06)]_2 chr14:74140268-74140768 8.74e-01 100 chr17:74514279-74514779 3.95e-02 19_[-9(8.13e-07)]_37_[-9(8.13e-07)]_\ 20 chr15:68277399-68277899 1.32e-01 4_[+2(4.70e-05)]_53 chr21:43728466-43728966 1.57e-01 100 chr7:74079379-74079879 1.76e-33 11_[-3(5.15e-14)]_7_[+2(3.44e-26)]_\ 8 chr1:229221384-229221884 3.96e-03 26_[-7(1.45e-07)]_52 chr16:4944703-4945203 4.84e-02 62_[-10(1.02e-05)]_13_\ [-10(1.02e-05)]_7 chr7:80876831-80877331 3.84e-01 86_[-10(3.88e-05)]_5 chr5:124740953-124741453 9.15e-01 100 chr19:40806679-40807179 9.79e-04 55_[+7(2.04e-07)]_23 chr19:36604686-36605186 1.39e-07 42_[+1(9.32e-10)]_14_[+6(3.22e-07)]_\ 1 chr3:181328955-181329455 2.27e-03 34_[-6(3.84e-05)]_8_[+7(9.20e-05)]_\ 24 chr17:51153373-51153873 5.67e-01 100 chr20:45972069-45972569 9.62e-01 100 chr14:76486254-76486754 4.75e-01 100 chr17:7836699-7837199 1.48e-03 12_[+7(7.81e-07)]_36_[+4(1.32e-06)]_\ 8 chr10:50463956-50464456 7.30e-02 30_[+6(1.10e-06)]_58 chr1:28648516-28649016 2.57e-01 50_[-1(5.70e-05)]_19 chr10:72204286-72204786 9.80e-01 100 chr1:205122042-205122542 8.90e-01 100 chr8:37479301-37479801 9.33e-01 100 chr20:48921200-48921700 7.98e-04 2_[+7(6.14e-08)]_18_[+4(2.00e-05)]_\ 36 chr1:212596164-212596664 7.95e-01 100 chr10:101442016-10144251 6.15e-15 44_[+7(5.29e-07)]_3_[-1(6.56e-16)] chr19:35947340-35947840 8.20e-13 57_[-1(2.18e-19)]_12 chr22:20496057-20496557 3.23e-08 24_[+7(2.93e-09)]_2_[+7(3.61e-06)]_\ 5_[+7(1.52e-08)]_3 chr7:116218118-116218618 7.22e-02 84_[-9(5.79e-06)]_4 chr1:234700142-234700642 6.07e-02 56_[+10(1.02e-05)]_35 chr10:63707258-63707758 1.20e-02 36_[-10(3.88e-05)]_7_\ [+10(3.88e-05)]_18_[+10(1.37e-05)]_12 chr9:18976658-18977158 3.47e-01 100 chr20:37095810-37096310 2.18e-01 100 chr14:99821631-99822131 8.67e-01 100 chr12:124914560-12491506 9.03e-01 100 chr5:175378442-175378942 5.68e-01 33_[-10(5.13e-05)]_58 chr15:72375761-72376261 1.21e-02 11_[+4(2.24e-06)]_67 chr17:74514075-74514575 3.63e-02 32_[-9(8.13e-07)]_19_[-9(8.13e-07)]_\ 25 chr10:77350576-77351076 1.14e-01 20_[+9(1.15e-05)]_68 chr1:25998124-25998624 4.09e-01 100 chr14:22982600-22983100 6.02e-02 30_[-1(7.61e-05)]_39 chr8:37302631-37303131 4.97e-01 100 chr17:45148398-45148898 8.77e-02 32_[-6(7.67e-05)]_56 chr16:25049523-25050023 2.68e-02 83_[+6(5.92e-05)]_5 chr1:86774468-86774968 4.05e-01 13_[+7(9.20e-05)]_65 chr19:1383510-1384010 5.52e-01 100 chr12:57111962-57112462 3.01e-12 1_[+1(2.46e-07)]_27_[+1(2.18e-19)]_\ 10 chr9:85743210-85743710 8.10e-02 88_[-9(3.98e-05)] chr15:74546102-74546602 8.62e-01 100 chr1:81126917-81127417 1.02e-01 100 chr1:183471805-183472305 4.92e-03 27_[-7(3.61e-06)]_51 chr17:34981747-34982247 6.26e-01 37_[+9(3.40e-05)]_51 chr14:36835069-36835569 2.50e-01 100 chr20:58650932-58651432 1.05e-01 49_[-4(9.13e-05)]_7_[-4(1.73e-06)] chr10:87845971-87846471 2.62e-01 63_[+7(4.29e-05)]_15 chr19:1021419-1021919 1.09e-02 25_[+4(5.83e-05)]_14_[+9(3.95e-06)]_\ 27 chr10:75379163-75379663 7.09e-01 100 chr15:65610910-65611410 8.78e-01 100 chr15:67792449-67792949 4.57e-02 12_[-9(9.48e-06)]_76 chr15:70494068-70494568 2.02e-02 82_[+9(2.84e-06)]_6 chr1:228781606-228782106 6.37e-07 16_[-1(5.88e-12)]_18_[-6(7.66e-06)]_\ 5_[-6(8.14e-07)]_6 chr1:93078907-93079407 3.93e-01 54_[-4(9.13e-05)]_24 chr6:82260149-82260649 4.55e-01 100 chr19:40920911-40921411 3.54e-02 84_[-10(2.17e-05)]_7 chrX:53225063-53225563 7.25e-01 100 chr21:39313509-39314009 5.74e-02 6_[-8(5.09e-05)]_63 chr4:128393157-128393657 1.44e-01 13_[-10(2.17e-05)]_78 chr14:54343575-54344075 9.32e-01 100 chr1:234723978-234724478 2.62e-02 36_[-9(1.64e-06)]_7_[-7(1.88e-05)]_\ 23 chr17:78558303-78558803 6.26e-02 8_[+9(1.24e-07)]_10_[+9(8.13e-07)]_\ 10_[-9(1.63e-05)]_16_[-9(2.89e-05)]_8 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: surya ********************************************************************************