# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN23.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018)
#        host: surya
#        when: Mon Jun 11 07:49:02 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.241 C 0.262 G 0.260 T 0.238


MOTIF TGAGTCAB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGAGTCAB   VTGACTCA         47          3   8.1e-012   2.7e-007
#         TGAGTCAG   CTGACTCA         15          0   2.8e-005   9.4e-001
#         TGAGTCAT   ATGACTCA         20          2   5.3e-005   1.8e+000
#         TGAGTCAC   GTGACTCA         15          1   2.4e-004   8.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 2.7e-007
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.290909 0.290909 0.418182


MOTIF ATAAAD DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ATAAAD     HTTTAT        132         56   8.4e-010   2.8e-005
#           ATAAAG     CTTTAT         44         13   1.6e-005   5.2e-001
#           ATAAAT     ATTTAT         50         19   8.0e-005   2.7e+000
#           ATAAAA     TTTTAT         55         32   7.0e-003   2.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 161 E= 2.8e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.372671 0.000000 0.279503 0.347826


MOTIF GKAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GKAAA      TTTMC        250        165   1.6e-007   5.3e-003
#            GTAAA      TTTAC        104         54   1.3e-005   4.2e-001
#            GGAAA      TTTCC        176        122   1.9e-004   6.4e+000

letter-probability matrix: alength= 4 w= 5 nsites= 339 E= 5.3e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.643068 0.356932
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACMTCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACMTCA   TGAKGTCA         37          6   5.5e-007   1.7e-002
#         TGACATCA   TGATGTCA         19          3   3.9e-004   1.2e+001
#         TGACCTCA   TGAGGTCA         19          3   3.9e-004   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.7e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.574468 0.425532 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GRGATTA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GRGATTA    TAATCYC         31          4   1.3e-006   4.1e-002
#          GAGATTA    TAATCTC         16          2   6.1e-004   1.9e+001
#          GGGATTA    TAATCCC         15          2   1.1e-003   3.5e+001

letter-probability matrix: alength= 4 w= 7 nsites= 31 E= 4.1e-002
0.000000 0.000000 1.000000 0.000000
0.516129 0.000000 0.483871 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 23.25 seconds