# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN21.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN21.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN21.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN21.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:59:29 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN21.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:59:29 PST 2017)
#        host: wotan
#        when: Mon Dec 18 17:28:52 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.240 C 0.255 G 0.264 T 0.241


MOTIF MAGYACY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     MAGYACY    RGTRCTK        314         76   4.0e-051   1.3e-046
#          AAGTACT    AGTACTT         47          3   8.1e-012   2.7e-007
#          CAGCACC    GGTGCTG         69         18   5.2e-009   1.7e-004
#          CAGTACT    AGTACTG         57         12   7.7e-009   2.5e-004
#          CAGCACT    AGTGCTG         70         19   7.8e-009   2.5e-004
#          AAGCACT    AGTGCTT         51         10   2.3e-008   7.6e-004
#          CAGTACC    GGTACTG         42          8   3.6e-007   1.2e-002
#          AAGCACC    GGTGCTT         37          8   5.4e-006   1.8e-001
#          AAGTACC    GGTACTT         30          6   2.7e-005   8.9e-001

letter-probability matrix: alength= 4 w= 7 nsites= 497 E= 1.3e-046
0.376258 0.623742 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.599598 0.000000 0.400402
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.490946 0.000000 0.509054


MOTIF ACTNAGY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ACTNAGY    RCTNAGT        164         50   1.6e-018   5.1e-014
#          ACTCAGC    GCTGAGT         46         12   2.5e-006   7.9e-002
#          ACTCAGT    ACTGAGT         47         14   8.5e-006   2.7e-001
#          ACTAAGC    GCTTAGT         21          4   4.0e-004   1.3e+001
#          ACTAAGT    ACTTAGT         25          7   9.2e-004   2.9e+001
#          ACTGAGC    GCTCAGT         31         11   1.2e-003   3.9e+001
#          ACTTAGC    GCTAAGT         18          5   5.0e-003   1.6e+002

letter-probability matrix: alength= 4 w= 7 nsites= 206 E= 5.1e-014
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.165049 0.388350 0.271845 0.174757
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.621359 0.000000 0.378641


MOTIF RTGASTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGASTCA   TGASTCAY         47          7   5.8e-009   1.8e-004
#         ATGACTCA   TGAGTCAT         24          3   2.1e-005   6.4e-001
#         ATGAGTCA   TGACTCAT         23          3   3.7e-005   1.2e+000
#         GTGAGTCA   TGACTCAC         18          2   1.8e-004   5.7e+000
#         GTGACTCA   TGAGTCAC         15          2   1.1e-003   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.8e-004
0.561404 0.000000 0.438596 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.403509 0.596491 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTCKG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACTCKG     CMGAGT         96         42   6.2e-007   1.9e-002
#           ACTCTG     CAGAGT         70         33   9.1e-005   2.8e+000
#           ACTCGG     CCGAGT         32         10   3.8e-004   1.2e+001

letter-probability matrix: alength= 4 w= 6 nsites= 108 E= 1.9e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.314815 0.685185
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 66.11 seconds