# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN18.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN18.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN18.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN18.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:22:54 PDT 2018)
#   negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN18.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:22:54 PDT 2018)
#        host: surya
#        when: Thu May 10 19:09:38 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.220 C 0.276 G 0.283 T 0.222


MOTIF CCGCYGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCGCYGC    GCRGCGG         65         19   9.2e-008   2.9e-003
#          CCGCCGC    GCGGCGG         44         11   2.7e-006   8.6e-002
#          CCGCTGC    GCAGCGG         25         10   7.6e-003   2.4e+002

letter-probability matrix: alength= 4 w= 7 nsites= 72 E= 2.9e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.666667 0.000000 0.333333
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CWGGAW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CWGGAW     WTCCWG        128         57   7.8e-009   2.4e-004
#           CAGGAA     TTCCTG         48         23   1.5e-003   4.8e+001
#           CAGGAT     ATCCTG         31         13   4.2e-003   1.3e+002
#           CTGGAT     ATCCAG         29         12   5.1e-003   1.6e+002
#           CTGGAA     TTCCAG         33         15   5.8e-003   1.8e+002

letter-probability matrix: alength= 4 w= 6 nsites= 147 E= 2.4e-004
0.000000 1.000000 0.000000 0.000000
0.551020 0.000000 0.000000 0.448980
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.564626 0.000000 0.000000 0.435374


MOTIF CCCTMCCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCTMCCC   GGGKAGGG         34          5   8.5e-007   2.6e-002
#         CCCTCCCC   GGGGAGGG         28          5   2.7e-005   8.2e-001
#         CCCTACCC   GGGTAGGG          7          0   7.7e-003   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.6e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.194444 0.805556 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TGATGYAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGATGYAA   TTRCATCA         23          1   1.2e-006   3.8e-002
#         TGATGCAA   TTGCATCA         13          1   8.7e-004   2.7e+001
#         TGATGTAA   TTACATCA         10          0   9.4e-004   2.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.8e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.406250 0.000000 0.593750
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 21.31 seconds