Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
RRRKGCTCWGHHAACA 16 AGAGGCTCTGTAAACA
GGCGTGAGCCACYGCGCCCGGC 22 GGCGTGAGCCACCGCGCCCGGC
TGTGTGTGTGTRTGTGTGTGTG 22 TGTGTGTGTGTGTGTGTGTGTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC 31 TGGGAGGCCGAGGCGGGCGGATCACTTGAGC
GAGGRGRRGARRGARG 16 GAGGAGGAGAAAGAGG
CTGGTCTCGAACTCCT 16 CTGGTCTCGAACTCCT
GAATGARTGARTGAGSRARNGAATGRWTGR 30 GAATGAGTGAATGAGCGAAGGAATGATTGG
TGCTTCANCCTGGGSCTGGAATGAGGACCCGATCYTRGWGTSAKABBACA 50 TGCTTCACCCTGGGGCTGGAATGAGGACCCGATCTTAGTGTCAGACGACA
TGHKBTKTMAACGCTBACMCAGYGCACAGYABGDSCTCTGTAA 43 TGCGCTGTCAACGCTTACCCAGCGCACAGCAGGTGCTCTGTAA
ATAGATTTATAATATCACTGAGGGCAGGGAT 31 ATAGATTTATAATATCACTGAGGGCAGGGAT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.237 C 0.263 G 0.263 T 0.237

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 + 10690170 10690200 4.98e-16 1.37e-10 tgggaggctgaggcgggcggatcacctgagg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 - 103714913 103714943 8.2e-16 1.37e-10 TGGGAGGCCGAGGCGGGCGGATCACGAGGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 8248788 8248818 1.05e-15 1.37e-10 TGGGAGCCCGAGGCGGGCAGATCGCTTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 201972914 201972944 1.11e-15 1.37e-10 tgggaggctgaggcgggtggatcacttgggg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 + 67678924 67678954 1.23e-15 1.37e-10 tgggaggccaaggtgggaggatcacttgagt
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 27473408 27473438 1.7e-15 1.57e-10 tgggaggccgaggtgggtggatcactaggtc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 - 190468688 190468718 2.75e-15 2.16e-10 TGGGAGGCTGAGGCAGGAGGATCACTTGCGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 + 51308875 51308905 3.11e-15 2.16e-10 tgggaagccgaggtgggtagatcacttgagg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 35068216 35068246 3.88e-15 2.32e-10 TGGGAGGCCAAGGTGGGCGGATCACCTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 + 68798743 68798773 4.59e-15 2.32e-10 tgggaggccgaggtgggtggatcacgaggtc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 + 74266315 74266345 4.59e-15 2.32e-10 tgggaggccgaggtgggtggatcacgaggtc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 19032388 19032418 5.62e-15 2.6e-10 TGGGAGGCCGAAGCGGGCGAATCACTTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 - 36654840 36654870 9.58e-15 4.09e-10 TGGGAGGCCAAAGTGGGAGGATCACTTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 + 5853863 5853893 1.04e-14 4.13e-10 tgggaggccaaggtgggtagatcacctgagg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 10377695 10377725 1.29e-14 4.61e-10 ggggaggccgaggcgggcagatcacgagatc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 62470762 62470792 1.41e-14 4.61e-10 TGGGAGGCTGAGGCAGAAGGATCACTTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr7 - 128523310 128523340 1.41e-14 4.61e-10 TGGGAGGCTGAGGCAGAAGGATCACTTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 + 8703180 8703210 2.05e-14 6.33e-10 tgggaggccgaggtgggtggatcacgaggtg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 - 59548818 59548848 1.22e-13 3.57e-09 TGGGAGGCCGAGGAGGGCGGATCATGAGGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 + 121210536 121210566 2.07e-13 5.7e-09 tgggagcccgaggcgggaccatcgcctgagc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 + 4204994 4205024 2.15e-13 5.7e-09 tgggagcctgaggcgggcggatcatgaggtc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 62470620 62470650 2.75e-13 6.65e-09 TGGGAGGCTAAGGCAGAAGGATCGTTTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr7 - 128523168 128523198 2.75e-13 6.65e-09 TGGGAGGCTAAGGCAGAAGGATCGTTTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 - 5853638 5853668 3.38e-13 7.83e-09 CGGGAGGCTGAGGCAGGAGAATCACTTGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 1318414 1318444 3.62e-13 8.04e-09 tgagaggctgaggtgggaggatccctggagc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 - 96193823 96193853 5e-13 1.07e-08 TGGGAGGCCAAGGCGGATGGATCACCTAAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 - 134738245 134738275 1.75e-12 3.59e-08 TGGAAGGCCGAGGCGGGCGGATCACGAGGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 - 103714780 103714810 3.08e-12 6.12e-08 TGGGAGGCTGAGGCAGGAGAATTGTTTGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 27673270 27673300 3.24e-12 6.21e-08 cgggaggctgaggcaggagaataacttgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 + 121819461 121819491 6.63e-12 1.23e-07 tgggaggccgaggcggccggatcatgaggtc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 - 20516437 20516467 6.84e-12 1.23e-07 TGGGAAGCTGAGGTGGGTGAGTCATCTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 4872654 4872684 7.2e-12 1.25e-07 TGAGGGGCCAAGGCGGGTGGATCAGGAGGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 + 16386615 16386645 1.01e-11 1.65e-07 ctggaggctgaggtgggaggatcgcttgagc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 + 121210670 121210700 1.01e-11 1.65e-07 caggaggctgaggtgggaggatcgcttgagc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 8248652 8248682 1.08e-11 1.71e-07 TGGTGGGCTGAGGTGGGAGGATCGCTTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 16324574 16324604 1.19e-11 1.84e-07 tgggaagccaaagcaggcagaaaacttgagt
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 - 190468547 190468577 1.68e-11 2.52e-07 TGGGAGGCTGAGGTAGGAGGACTGCTTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 - 70165117 70165147 1.76e-11 2.58e-07 TGGGAGGCTGAGGTGGGCAGATCATAAGGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 + 18998645 18998675 3.1e-11 4.41e-07 tgggaggctgaggcaggagaatggcgtgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr21 - 39183732 39183762 4.31e-11 5.99e-07 TGGGAGGTCTAAGGAGGACGATCGCTAGAGT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 225809733 225809763 4.63e-11 6e-07 ctggaggccgaagtgggaggatcgcttgagg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 58025817 58025847 4.66e-11 6e-07 tggaaggctgaggcaggaaaatcgctagaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 + 10690307 10690337 4.76e-11 6e-07 cgggaggttgaggcaggagaattgcttgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 27213709 27213739 4.76e-11 6e-07 cgggaggctgaggcaagagaattgcttgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 + 4204858 4204888 6.01e-11 7.42e-07 tgggaggcccaggcgggcagattagcagagg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr4 - 4200648 4200678 6.99e-11 8.4e-07 TGGGAGACTGACGCAGGTGGATCACTTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 - 96193674 96193704 7.1e-11 8.4e-07 TGGCAGGCTGAGGCGAGAGAATCGCTTGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr22 - 21567392 21567422 1.19e-10 1.37e-06 TGGGAGACCGAGGCGGGTGGATCACGCGGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 33373188 33373218 1.22e-10 1.38e-06 AGGGAGGCCGAGGCGGGAGAATGGCTTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 - 59548685 59548715 1.37e-10 1.49e-06 CAGGAGGCTGAGGCAGGAGAATCGCTTGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 + 30731091 30731121 1.37e-10 1.49e-06 ctggaggctgaggcaggagaatcgcttgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 - 134738094 134738124 1.42e-10 1.52e-06 CGGGAGGCTGAGGCAGGAGAATCTCTTGGAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 + 27169754 27169784 1.75e-10 1.84e-06 caggaggttgaggcaggagaatcgcttgagc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 + 177381624 177381654 1.84e-10 1.89e-06 taggaggctgaggcgggtggatcacaaggtc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 + 2635054 2635084 2.13e-10 2.15e-06 caggaggctgaggcaggagaatcactagaag
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 - 89505075 89505105 2.54e-10 2.52e-06 TGAGAGGCCGAGACCGGTGGATCACGAGATC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 10377827 10377857 3.98e-10 3.88e-06 tgggagcctgaggcaggagaactgcttgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 + 5854001 5854031 5.96e-10 5.71e-06 tggaaggttgaggcaggagaattgcttgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 4872520 4872550 6.65e-10 6.26e-06 TGGGAGCCTAAGGCAGGAGAATGGTGTGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 - 102524528 102524558 6.83e-10 6.33e-06 TTGGAAGCCAAGGGGGGAGGATCGCTTGAGA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 - 110698229 110698259 7.96e-10 7.25e-06 TAGGAGGCCAAGACGGGAGGATCGCTTGAAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 - 72223157 72223187 1.04e-09 9.28e-06 CAGGAGGCTGAGGCAAGAGAATCATTTGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 236605139 236605169 1.09e-09 9.62e-06 tgggaagctcaggcgagctgatcacctgagg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 44730850 44730880 1.46e-09 1.26e-05 tgagagactgaagcaggaaaatcccttgaag
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr20 - 49625593 49625623 1.64e-09 1.4e-05 TGAGATTCCGAGGTGGGAGGATCGCTTGAAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 27473536 27473566 1.31e-08 0.00011 caggaggcagaggcagaagaatcgcttgaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 201972632 201972662 1.38e-08 0.000113 TGGGAGGCCGAGGTGGGAGGATTGAGTCCAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 + 2634919 2634949 1.38e-08 0.000113 ttggagaccaaggccggcggatcacttgaag
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 34067255 34067285 1.71e-08 0.000137 CAGGAGGCTGAGGCAGGATAATTGCTTGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 16324707 16324737 8.33e-08 0.000661 agggggtctgaggtgcgagcatcgcttgagc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 27213574 27213604 9.15e-08 0.000716 tgggaggccgaggcgctctgatcaccttagg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr8 - 33513838 33513868 1.71e-07 0.00132 CGGGAGGCTGAGGTAGGACAATCTCTCGAAA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 34067390 34067420 2.05e-07 0.00156 TTAGGCTCTGAGGCGGGTGCATCACCTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 - 38137311 38137341 4.7e-07 0.00353 CGGTAGGCCAAGGTAGGCGGGGCATTGAGTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 225778239 225778269 6.22e-07 0.00461 TGAGGGACTGGGGCGGGAAGATCGATTGCAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 236605274 236605304 6.35e-07 0.00464 aggaaagctgagacagaagaatcgctggaac
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 + 163505784 163505814 6.74e-07 0.00486 GGGGGCGCCGAGGGGGACGAGCCACCGGGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 158644727 158644757 8.06e-07 0.00574 AGAGAGGCTAAATCGGGACCATTCCCGGAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr18 + 59358584 59358614 2.27e-06 0.016 TGGGGGGTGGAAGCGGGAAAGGAAGTAAGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 1318550 1318580 2.34e-06 0.0163 tgggaggccgaggtgggagatcacctcaacc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr18 - 48106842 48106872 2.6e-06 0.0178 TGGGAAGCCAAAGAGGTCCCATCCCCACCCC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 92832305 92832335 2.94e-06 0.0199 GGAGGGGTTGGCGAAGAAGGGTTGCGTGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 - 69360728 69360758 3.02e-06 0.0201 TGGGAGGCCGAGGTTGCAGTGAGCCGAGATC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 - 96194015 96194045 3.04e-06 0.0201 TGGGGGGCAGAGGGGAATCGAGAGTGGGGTT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 8248620 8248650 5.05e-06 0.033 CGGGAGGTCGAGGCTGCAGTGAACCGAGATG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 229411427 229411457 5.74e-06 0.037 TGGGGGGGAGAAGGGAGACGGAAAGGGGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 225778307 225778337 5.79e-06 0.037 CAGGAAGCTGCAGGGGGAGGAGCCCTGGCTT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr4 + 140153973 140154003 5.86e-06 0.037 GGACAGTCCGAGGCGACTGCAAAAGTAGATC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 40421087 40421117 7.18e-06 0.0448 GGGGAGGCAGAGGCAGGAGTGGAGCTGGGCC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 - 149545285 149545315 8.25e-06 0.0509 CGGAAACCAGAAGAGGGCGGCTTCTTTGGTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr20 + 26009920 26009950 1.03e-05 0.0627 TGGAGGGCTGAGGAGAGGAGTTTGCGTGTGT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr4 - 4200787 4200817 1.09e-05 0.0659 TGTAATCCCGAGGCTGGAGCATTGCTTCAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 4198175 4198205 1.16e-05 0.0694 CTGGAGGATGAGGAGGACGCGGCGCCGGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 + 9819586 9819616 1.34e-05 0.079 ggcggggctggggcggggcgagaccttgggg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 - 103715095 103715125 1.49e-05 0.0869 GGGGAGGCCGAGGTGGGCCCGCGGCTGCGCC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr22 - 37802662 37802692 1.54e-05 0.0892 GCCGAAGCCGAGGCGGGCAAGACGAGGAAAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 63523557 63523587 1.7e-05 0.0972 TGTCCAGCTGCGGTGAGAGGAACGCTGAATC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 - 36835460 36835490 1.72e-05 0.0974 CAGGGGCCCTAGGGAGATAAAATGCCTTGTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chrX + 19373099 19373129 2.25e-05 0.125 ggagaggtgagggagggaaggtgaggGGGAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr13 + 77027440 77027470 2.25e-05 0.125 TGGAAGGTTTAGGGAGGTGGAGCAGAAAAAA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr22 - 20496271 20496301 2.63e-05 0.143 TGAGAGAGTGAAGGAGGGAGGGAATGAGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 58025849 58025879 2.63e-05 0.143 tgggaggcggaggttgcagtgagccgagatc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 109426819 109426849 2.73e-05 0.146 GAGGAACCCTAAGAGAGGGAATCCTGCGAAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 - 102524737 102524767 2.74e-05 0.146 TGGGAAGCCGGGAGGGTCGGGGAAGTAGCTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 225777996 225778026 2.77e-05 0.147 CGCTGACCCTATGAAGGTAAATCGCTGGCGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 - 3873146 3873176 3.03e-05 0.158 GGCGGGGTTGATGAGAGAGGGGCGGGAGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 107493415 107493445 3.08e-05 0.158 GGGGAAATGAAAGGGGGAAAGAAGAGAGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 - 26033364 26033394 3.08e-05 0.158 CGAGGAGAGGAAGGTTGAGGAACACCTGGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 + 110698518 110698548 3.1e-05 0.158 AGCAGAGCCGAGGTGGGAGGACTCCTGGCTT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 1318581 1318611 3.28e-05 0.166 cgggaggccgaggctgcagtgagccaagatc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 + 3783925 3783955 3.42e-05 0.171 CAGGAGGGGGAGGGGGAAAAGGCAGGAGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 + 35995152 35995182 3.71e-05 0.184 ttggaggcCAAGGGAAGCGCTGGGCGGAAGT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 + 154138686 154138716 3.9e-05 0.19 GGGGAACTGAGGCTTGGAGGATCGTGGGATG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 + 139341779 139341809 3.91e-05 0.19 TCGGAGGGCAGAGCTGACAGAACAAGAGGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 48996522 48996552 3.96e-05 0.191 GGGGAGGTCTTAGGGAGGGAGTGACCGGGTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr20 + 32109642 32109672 3.98e-05 0.191 GGAGCGGTTGAAGCCAGACGACCACCTTGTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr15 - 65184978 65185008 4.11e-05 0.195 GGGGGCCCCGGGGAGGGCACGAGGCCTGCTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 186097766 186097796 4.17e-05 0.196 AGGGAAGCCAAAGGAAACTAATTTTGGAGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 30707379 30707409 4.22e-05 0.197 GGAGGGGCAAAGGGAAGGGAGACGCTTTGAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 + 10690339 10690369 4.47e-05 0.203 tgggaggcggaggttgcagtgagctgagatc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 13650538 13650568 4.47e-05 0.203 TTGCGGGCCGCGGGAAACAGGACCCTGGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 - 96193642 96193672 4.47e-05 0.203 TGGGAGGCAGAGGTTGCAGTGAGCTGAGATC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 1375101 1375131 4.54e-05 0.205 CGGGAGGCCTGAGGGCGCCGGGCGCTGCGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr20 - 49888884 49888914 4.6e-05 0.206 GGAGAGGGGAAAGAGGATGGAACCCTGACTA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 226738852 226738882 4.69e-05 0.207 GGAGTGGCGGTGGGGAGAAAATAGGGAGAGA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 + 93582950 93582980 4.7e-05 0.207 GGGGGGGAGAAAGAAAGCAAAAGAGGAGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr7 - 26083114 26083144 4.73e-05 0.207 TTAGAGCTTGATGCAAAATGATTGTCAACTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 47821867 47821897 4.94e-05 0.214 AGGGGGGCAGAGCTGAGCGGCTGCCCGGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 65066729 65066759 5.26e-05 0.227 GAGGAGGAGGAGGAGGGAGGGAGAAGAGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 + 7665818 7665848 5.43e-05 0.232 AGGTATACCGAGGTGTGTGAATCAGTACAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 + 80655001 80655031 5.47e-05 0.232 TGGGGGGGCGGGGCTTGTGGGTAAGGCGGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 48634617 48634647 5.64e-05 0.237 GAGGGGGGCGGGGCCGGGGGAACGTGAGGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 + 34067410 34067440 5.68e-05 0.237 tcagagcctaaagtgctcggattacaggcat
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr8 - 11744228 11744258 5.86e-05 0.243 TAGGAGGCTGAAGTTGGAGGGGTCAGGAGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 16964787 16964817 5.94e-05 0.245 TGGAATACTGAGTTGGGAAAATCTTCCGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 + 57447607 57447637 6.02e-05 0.246 GGGGAGCGCGGAGGGGGCGCGAGGCCGGCTT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 - 103714742 103714772 6.11e-05 0.246 CGGGAGGCGGAGGTTGCAGTGAGCCGAGATC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 - 125111567 125111597 6.15e-05 0.246 CCGGAATCTGAGGTGTGAGTAGAGCCTGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 168096153 168096183 6.16e-05 0.246 GGGTGGGAAGAGGCAGGCGGAAGGGCGAAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 + 30731123 30731153 6.23e-05 0.247 cgggaggcgcaggttgtagggagacgaaatc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 - 75295025 75295055 6.31e-05 0.249 CGCGGGGCTGAAGCTGAGCATTTGCCGGAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 + 66745059 66745089 6.46e-05 0.252 CGGGGAAGCGAGGAAGTAGGAGCAGATGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 + 57896748 57896778 6.59e-05 0.252 CGGGGGGTCGGGGGAGGAGGGAGCGTTCCTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 212088633 212088663 6.66e-05 0.252 ggaggagctgacttggcaagaaaaccacatg
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 - 70202988 70203018 6.84e-05 0.252 GGGGAGGGCGCAGCCCGAACGTCACGTGCCC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr5 + 124742322 124742352 6.86e-05 0.252 TAAAAGGCTAAGGGGAATGCAAAAGGGCAGT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 - 175004796 175004826 6.95e-05 0.252 TGGGGGGCCTGGGCGCCCGGGGAGGGGGCGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 - 85047424 85047454 6.96e-05 0.252 GGAGAAGCGTGGCAGAGCTGATAACTGAAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 + 66593318 66593348 6.98e-05 0.252 TGTGGAGCCTCGCCGGGCAGAGAGCCTCGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 + 2635086 2635116 6.99e-05 0.252 tgggaggcagaggttgcagtgagctgagatt
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 + 27169786 27169816 6.99e-05 0.252 tgggaggcagaggttgcagtgagctgagatt
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 226738585 226738615 7.04e-05 0.252 GGAGGAACTTAGGGGCGTGCATGGCTGCAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 - 17849694 17849724 7.06e-05 0.252 TCAGTGGTAGAGTCAGGAAGGAACCCAGGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 + 10332965 10332995 7.06e-05 0.252 tgagGGGTGCAGGGGGGAGGGGCAGGGTGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 + 175167923 175167953 7.09e-05 0.252 GGAGCACCCGAGGTGATGGGAAACGGGGGGT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 23980372 23980402 7.18e-05 0.252 GGGGAAGTGGAGGCGGGAGTGAAGTCTCGCG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 24775121 24775151 7.21e-05 0.252 CAAGAGGCGGCAGGAAGTGGGTACGCAGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 109382215 109382245 7.23e-05 0.252 TGGTGACCAGCGGGAGGGACGTCACCGGCGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 - 109094535 109094565 7.26e-05 0.252 GGAGGAGCTGCGGAGGGCGGGGACTGGTGTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 - 45669279 45669309 7.28e-05 0.252 GGGGAGGGAGAGGCACGCGGAGTGGGTGGAA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 + 21384711 21384741 7.31e-05 0.252 GTGTAAGTCAGAGGAAACAGATGACTTGAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr15 + 89655233 89655263 7.36e-05 0.252 CAGGAGGCTGGGGAGCAAGGGTGCCGGGCTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 - 89602789 89602819 7.41e-05 0.252 TGATGGGGTGAGGGGAGGGAGGCACCAGCTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 149473495 149473525 7.49e-05 0.254 GGGGAGGCTGCAGAGATTCCGTCACAGGGGA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr15 - 95948794 95948824 7.61e-05 0.255 TGAGGGGAGGAGGGAGGAGAGGAAGCTGTAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 - 125111355 125111385 7.61e-05 0.255 TTGGAGGCAGAGAAGGAAGGACTGTTTTGTT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr9 - 132745054 132745084 7.74e-05 0.257 TGGGCAATGGAAGAAGGGGAAATAGGTGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr2 - 43227236 43227266 7.86e-05 0.257 GGGGAGGGGGCGGAGAAACGAGCCCGGGCTC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 + 43933755 43933785 7.86e-05 0.257 TGGGAGGTCTTCTTGGGAGGTCTCCCTGGGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr14 + 50397642 50397672 7.88e-05 0.257 GCAGTACCCGAGGAGAGAAAATTAACACAGT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr17 + 5439727 5439757 7.93e-05 0.258 taaaaacccaagaggagagggtttgcagagc
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr22 + 41413692 41413722 8.23e-05 0.265 GGGGAGGGCAAAGGGCGTGCGGGCCGTAAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr7 + 128523464 128523494 8.25e-05 0.265 GGGGAGGTGAGAGAAGGAAGGAAGGGAGGCT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 + 66169796 66169826 8.34e-05 0.266 CTAGAGGCCGAGCAGTGCAGACAAGCGGCTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 58026164 58026194 8.49e-05 0.269 GAGGAGGGTGGAGATGGAGAGACAGGTGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 168096186 168096216 8.66e-05 0.273 GGGGAGCTTTGGGTGGGCGGGGGACTTGTCC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr7 - 42237578 42237608 8.96e-05 0.281 TTAAAACTTGGGGGAGGAGGAGCGCGGGGAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 25962353 25962383 9.12e-05 0.284 TAGAAAGCTGACTCAGATGAATTTTGTGATG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr12 + 26125796 26125826 9.16e-05 0.284 GGGAAGGGAGAAGGGGGTGGCACGAGAGGGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr16 + 68843573 68843603 9.2e-05 0.284 CGAGGCGCCTGAGCGGGTCGCGAGCGTGGTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr19 + 35558310 35558340 9.24e-05 0.284 GCGGGGCCCGAGGTGGGCGGGCCCAGGCCGT
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr6 + 16635889 16635919 9.3e-05 0.284 GGGGAAGCACAGGCAGCACAGTCCGTGCAAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr8 + 28365830 28365860 9.36e-05 0.284 TAAGGAACTGGAACAGGCAGAACAGTAAAAC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 229411426 229411456 9.61e-05 0.29 GGGGGGGAGAAGGGAGACGGAAAGGGGAGGA
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr3 + 69866415 69866445 9.71e-05 0.292 GGGGAGGATAAAGGAAGAGAAGGGTTTATTG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr11 - 120195645 120195675 9.86e-05 0.292 GCAGAGGCTGATGATGGATGAATGCCACAGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr22 - 20496409 20496439 9.88e-05 0.292 TGAGAGAGGGAGGAGAGAACGAGAGTTAAGG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 - 241847852 241847882 9.88e-05 0.292 CTGGAGGCTGATGTTGAAAGAGCGCCGTCGC
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr10 - 69630036 69630066 9.95e-05 0.292 TGGGAGGAGAAGACACGTGGAAAAGAAGGAG
TGGGAGGCCGAGGCGGGHRGATCACKWGAGC MEME-4 chr1 + 23980230 23980260 9.99e-05 0.292 TGGGGGGACGCAGGTAGCGGGACATGGCGGC
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif TGGGAGGCCGAGGCGGGHRGATCACKWGAGC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_4
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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