# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:24 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZSCAN16.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018) # host: kadru # when: Mon Jun 11 07:51:17 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.237 C 0.265 G 0.267 T 0.230 MOTIF AGGCTCDG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGGCTCDG CHGAGCCT 134 10 2.7e-032 8.7e-028 # AGGCTCTG CAGAGCCT 76 7 5.7e-017 1.9e-012 # AGGCTCAG CTGAGCCT 46 1 1.4e-013 4.7e-009 # AGGCTCGG CCGAGCCT 15 2 1.1e-003 3.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 8.7e-028 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.335714 0.000000 0.107143 0.557143 0.000000 0.000000 1.000000 0.000000 MOTIF GTWAWC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GTWAWC GWTWAC 151 30 5.0e-024 1.6e-019 # GTAAAC GTTTAC 62 10 4.1e-011 1.3e-006 # GTAATC GATTAC 47 9 6.9e-008 2.2e-003 # GTTATC GATAAC 24 5 2.4e-004 7.7e+000 # GTTAAC GTTAAC 22 8 7.4e-003 2.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 161 E= 1.6e-019 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.708075 0.000000 0.000000 0.291925 1.000000 0.000000 0.000000 0.000000 0.546584 0.000000 0.000000 0.453416 0.000000 1.000000 0.000000 0.000000 MOTIF GARCACY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GARCACY RGTGYTC 139 38 3.4e-017 1.1e-012 # GAGCACC GGTGCTC 39 8 1.8e-006 5.9e-002 # GAGCACT AGTGCTC 50 17 2.1e-005 6.7e-001 # GAACACT AGTGTTC 28 7 2.1e-004 6.8e+000 # GAACACC GGTGTTC 24 6 6.3e-004 2.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 147 E= 1.1e-012 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.360544 0.000000 0.639456 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.462585 0.000000 0.537415 MOTIF ATAAAH DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ATAAAH DTTTAT 110 35 1.1e-011 3.5e-007 # ATAAAA TTTTAT 54 15 6.7e-007 2.1e-002 # ATAAAT ATTTAT 37 9 1.5e-005 4.6e-001 # ATAAAC GTTTAT 34 15 4.0e-003 1.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 130 E= 3.5e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.453846 0.261538 0.000000 0.284615 MOTIF CWGCAAAC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CWGCAAAC GTTTGCWG 36 4 6.0e-008 1.9e-003 # CAGCAAAC GTTTGCTG 19 1 1.8e-005 5.5e-001 # CTGCAAAC GTTTGCAG 17 3 1.2e-003 3.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.9e-003 0.000000 1.000000 0.000000 0.000000 0.540541 0.000000 0.000000 0.459459 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGCCTST DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGCCTST ASAGGCT 47 12 1.5e-006 4.7e-002 # AGCCTGT ACAGGCT 21 3 1.2e-004 3.8e+000 # AGCCTCT AGAGGCT 27 9 1.7e-003 5.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 48 E= 4.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.562500 0.437500 0.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: E-value threshold exceeded # Running time: 31.85 seconds