# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF843.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF843.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF843.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF843.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:56:58 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF843.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:56:59 PST 2017)
#        host: indra
#        when: Mon Dec 18 17:12:42 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.301 C 0.197 G 0.198 T 0.304


MOTIF ATAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATAAA      TTTAT        411        204   1.4e-033   4.3e-029
#            ATAAA      TTTAT        411        204   1.4e-033   4.3e-029

letter-probability matrix: alength= 4 w= 5 nsites= 657 E= 4.3e-029
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTAAW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GTAAW      WTTAC        331        225   5.5e-010   1.6e-005
#            GTAAA      TTTAC        225        140   6.2e-008   1.8e-003
#            GTAAT      ATTAC        169        113   8.7e-005   2.6e+000

letter-probability matrix: alength= 4 w= 5 nsites= 470 E= 1.6e-005
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.578723 0.000000 0.000000 0.421277


MOTIF CTTATC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CTTATC     GATAAG         88         27   9.0e-010   2.5e-005
#           CTTATC     GATAAG         88         27   9.0e-010   2.5e-005

letter-probability matrix: alength= 4 w= 6 nsites= 92 E= 2.5e-005
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAGCAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CAGCAG     CTGCTG         75         27   3.8e-007   1.1e-002
#           CAGCAG     CTGCTG         75         27   3.8e-007   1.1e-002

letter-probability matrix: alength= 4 w= 6 nsites= 78 E= 1.1e-002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.32 seconds