# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 ADVYHATAAAW MEME-1 ADVYHATAAAW 7.2e-046 9.7e-049 -110.55 0.0 216 490 408 537 0.44082 4.0e-051 244 1 TGTTTAYTTTKS MEME-2 TGTTTAYTTTKS 1.2e-013 1.6e-016 -36.40 0.0 157 489 253 492 0.32106 6.4e-019 244 2 ATAAA DREME-1 ATAAA 1.0e-014 1.4e-017 -38.84 0.0 196 496 337 578 0.39516 5.5e-020 247 2 GTAAW DREME-2 GTAAW 1.9e-005 2.6e-008 -17.46 0.0 128 496 218 574 0.25806 1.1e-010 247 2 CTTATC DREME-3 CTTATC 1.3e-009 1.8e-012 -27.07 0.0 165 495 125 211 0.33333 7.1e-015 247 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 3.3e0000 4.4e-003 -5.42 0.0 106 492 165 567 0.21545 1.8e-005 245 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 2.1e-002 2.8e-005 -10.48 0.0 241 491 344 573 0.49084 1.2e-007 245 3 M0633_1.02 DMRT2 KAATKTATWN 7.1e-001 9.6e-004 -6.95 0.0 199 491 283 567 0.40530 3.9e-006 245 3 M0718_1.02 FOXK1 DNRTMAACAH 1.2e-009 1.6e-012 -27.17 0.0 143 491 263 595 0.29124 6.4e-015 245 3 M0719_1.02 FOXG1 RTAAACAW 2.4e-008 3.2e-011 -24.17 0.0 139 493 246 579 0.28195 1.3e-013 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 7.2e-010 9.7e-013 -27.66 0.0 125 489 238 591 0.25562 4.0e-015 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 7.5e-008 1.0e-010 -23.01 0.0 149 493 263 594 0.30223 4.1e-013 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 2.8e-009 3.8e-012 -26.28 0.0 169 491 296 595 0.34420 1.6e-014 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 2.1e-013 2.8e-016 -35.80 0.0 167 491 309 599 0.34012 1.2e-018 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHHACANN 2.1e-002 2.8e-005 -10.48 0.0 138 492 201 520 0.28049 1.1e-007 245 3 M0890_1.02 LHX6 NYAATCAN 5.8e-001 7.9e-004 -7.15 0.0 261 493 366 587 0.52941 3.2e-006 246 3 M0892_1.02 EMX1 NYTAATKAVN 8.6e-007 1.2e-009 -20.57 0.0 259 491 391 586 0.52749 4.8e-012 245 3 M0893_1.02 ZFHX2 NNTAATTANN 9.9e-004 1.3e-006 -13.52 0.0 267 491 360 540 0.54379 5.5e-009 245 3 M0894_1.02 LBX1 TTAATTAG 3.5e-003 4.7e-006 -12.27 0.0 151 493 239 575 0.30629 1.9e-008 246 3 M0896_1.02 VENTX TTAATTAG 2.4e-008 3.2e-011 -24.16 0.0 261 493 391 575 0.52941 1.3e-013 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 2.5e-035 3.3e-038 -86.29 0.0 183 491 383 595 0.37271 1.4e-040 245 3 M0900_1.02 SHOX HTAATTRV 5.8e-005 7.9e-008 -16.36 0.0 107 493 193 588 0.21704 3.2e-010 246 3 M0901_1.02 AC226150.2 CWTGTCAA 2.1e0000 2.8e-003 -5.87 0.0 143 493 221 595 0.29006 1.2e-005 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.1e-009 1.6e-012 -27.19 0.0 306 492 424 545 0.62195 6.3e-015 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 6.2e0000 8.4e-003 -4.78 0.0 247 491 309 523 0.50305 3.4e-005 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 6.6e-007 8.9e-010 -20.84 0.0 134 492 231 567 0.27236 3.6e-012 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.2e-001 1.6e-004 -8.74 0.0 259 493 337 534 0.52535 6.5e-007 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 8.0e-006 1.1e-008 -18.34 0.0 300 494 341 453 0.60729 4.4e-011 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 6.9e-002 9.4e-005 -9.27 0.0 114 494 188 587 0.23077 3.8e-007 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 7.9e-001 1.1e-003 -6.85 0.0 246 492 345 582 0.50000 4.3e-006 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 1.4e-002 1.9e-005 -10.88 0.0 266 492 383 591 0.54065 7.7e-008 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 4.6e-004 6.3e-007 -14.28 0.0 132 492 221 581 0.26829 2.6e-009 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 1.5e-009 2.1e-012 -26.90 0.0 244 492 385 589 0.49593 8.5e-015 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 2.4e-015 3.2e-018 -40.27 0.0 230 492 162 206 0.46748 1.3e-020 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.1e-007 1.5e-010 -22.59 0.0 302 492 424 560 0.61382 6.3e-013 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATTA 2.1e-002 2.8e-005 -10.48 0.0 259 493 280 430 0.52535 1.1e-007 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 5.2e-013 7.0e-016 -34.89 0.0 260 492 412 584 0.52846 2.9e-018 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 1.8e-004 2.4e-007 -15.24 0.0 130 492 213 557 0.26423 9.8e-010 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.2e-007 1.7e-010 -22.51 0.0 302 492 411 542 0.61382 6.8e-013 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 4.3e-007 5.8e-010 -21.27 0.0 219 493 335 568 0.44422 2.4e-012 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 5.2e-010 7.0e-013 -27.98 0.0 302 492 451 588 0.61382 2.9e-015 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 9.3e-002 1.3e-004 -8.98 0.0 261 491 370 585 0.53157 5.2e-007 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 7.1e-035 9.6e-038 -85.24 0.0 207 491 411 594 0.42159 3.9e-040 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 4.0e-009 5.4e-012 -25.94 0.0 246 492 378 576 0.50000 2.2e-014 245 3 M1592_1.02 (SOX3)_(Mus_musculus)_(DBD_1.00) NNNWCAAT 6.0e0000 8.1e-003 -4.82 0.0 149 493 158 396 0.30223 3.3e-005 246 3 M1863_1.02 FOXD1 GTAAACAW 2.9e-007 4.0e-010 -21.65 0.0 109 493 200 571 0.22110 1.6e-012 246 3 M1868_1.02 GATA2 DSAGATAAGAAHHW 3.4e-008 4.6e-011 -23.81 0.0 167 487 282 574 0.34292 1.9e-013 243 3 M2267_1.02 CDX2 TTTTATKRCHB 5.6e-030 7.6e-033 -73.95 0.0 206 490 390 576 0.42041 3.1e-035 244 3 M2270_1.02 DUX4 TAAYYYAATCA 9.9e-002 1.3e-004 -8.92 0.0 214 490 283 520 0.43673 5.5e-007 244 3 M2278_1.02 FOS DVTGASTCATB 4.1e-001 5.5e-004 -7.51 0.0 236 490 301 515 0.48163 2.3e-006 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 2.1e-002 2.8e-005 -10.47 0.0 82 486 148 582 0.16872 1.2e-007 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 6.8e-014 9.1e-017 -36.93 0.0 176 488 312 573 0.36066 3.8e-019 243 3 M2289_1.02 JUN DDRATGATGTMAT 7.3e-004 9.9e-007 -13.82 0.0 242 488 321 515 0.49590 4.1e-009 243 3 M2292_1.02 JUND DRTGASTCATS 1.8e0000 2.4e-003 -6.01 0.0 226 490 267 476 0.46122 1.0e-005 244 3 M2385_1.02 FOXP2 RWGTAAACAVR 4.6e-005 6.2e-008 -16.60 0.0 110 490 197 581 0.22449 2.5e-010 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 2.8e-001 3.7e-004 -7.90 0.0 292 486 396 569 0.60082 1.5e-006 242 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 2.9e-008 4.0e-011 -23.95 0.0 236 486 375 590 0.48560 1.6e-013 242 3 M4600_1.02 GATA1 NSAGATAAGVV 1.6e-008 2.2e-011 -24.55 0.0 134 490 242 580 0.27347 9.0e-014 244 3 M4619_1.02 FOSL1 BGGTGASTCAT 2.1e0000 2.8e-003 -5.87 0.0 198 490 230 456 0.40408 1.2e-005 244 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 4.0e0000 5.4e-003 -5.23 0.0 228 484 250 438 0.47107 2.2e-005 241 3 M4930_1.02 (NPAS4)_(Drosophila_melanogaster)_(DBD_0.61) RADTCGTGACT 3.0e0000 4.0e-003 -5.52 0.0 178 490 174 369 0.36327 1.6e-005 244 3 M5284_1.02 ALX3 BNTAATTRGY 3.9e-002 5.3e-005 -9.85 0.0 261 491 369 579 0.53157 2.2e-007 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 2.7e-004 3.7e-007 -14.81 0.0 214 488 305 538 0.43852 1.5e-009 243 3 M5291_1.02 ARX YTAATTNRATTAN 2.7e-003 3.7e-006 -12.51 0.0 172 488 242 512 0.35246 1.5e-008 243 3 M5292_1.02 ATF4 RKATGAYGCAATM 4.0e-002 5.4e-005 -9.82 0.0 250 488 287 454 0.51230 2.2e-007 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 9.9e-003 1.3e-005 -11.22 0.0 253 487 182 267 0.51951 5.5e-008 243 3 M5294_1.02 BARHL2 NHTAAAYGNT 1.8e-003 2.5e-006 -12.92 0.0 153 491 248 587 0.31161 1.0e-008 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 9.1e-003 1.2e-005 -11.30 0.0 138 484 191 478 0.28512 5.1e-008 241 3 M5310_1.02 BSX NTAATBRS 6.7e-011 9.1e-014 -30.03 0.0 151 493 269 575 0.30629 3.7e-016 246 3 M5322_1.02 CPEB1 TTTTTATT 2.2e-006 3.0e-009 -19.63 0.0 195 493 315 591 0.39554 1.2e-011 246 3 M5339_1.02 DLX1 NNTAATTRNN 2.4e-003 3.3e-006 -12.64 0.0 245 491 356 578 0.49898 1.3e-008 245 3 M5342_1.02 DLX4 NTAATTRN 3.4e-006 4.5e-009 -19.21 0.0 249 493 380 593 0.50507 1.8e-011 246 3 M5343_1.02 DLX5 NTAATTRN 1.6e-003 2.1e-006 -13.06 0.0 143 493 237 594 0.29006 8.6e-009 246 3 M5344_1.02 DLX6 NTAATTRN 2.4e-006 3.3e-009 -19.53 0.0 133 493 234 589 0.26978 1.3e-011 246 3 M5346_1.02 DPRX SHTAATCCNN 3.6e0000 4.9e-003 -5.32 0.0 127 491 195 580 0.25866 2.0e-005 245 3 M5348_1.02 DRGX NTAATYHAATTAN 1.3e-003 1.7e-006 -13.27 0.0 214 488 285 504 0.43852 7.1e-009 243 3 M5349_1.02 DUXA NTRAYYTAATCAN 9.6e-005 1.3e-007 -15.86 0.0 214 488 311 546 0.43852 5.3e-010 243 3 M5388_1.02 EMX2 NYTAATTAVB 2.7e-005 3.7e-008 -17.11 0.0 257 491 362 551 0.52342 1.5e-010 245 3 M5390_1.02 EN1 VBTAATTRSB 4.6e-006 6.2e-009 -18.90 0.0 269 491 402 590 0.54786 2.5e-011 245 3 M5394_1.02 EN2 NNTAATTRVD 1.7e-003 2.3e-006 -12.99 0.0 121 491 202 573 0.24644 9.3e-009 245 3 M5414_1.02 ESX1 DNTAATTRRN 6.4e-007 8.7e-010 -20.87 0.0 261 491 398 593 0.53157 3.5e-012 245 3 M5427_1.02 EVX1 SNTAATTABB 1.6e-004 2.2e-007 -15.32 0.0 225 491 337 577 0.45825 9.1e-010 245 3 M5428_1.02 EVX2 NNTAATKABB 3.0e-006 4.0e-009 -19.34 0.0 225 491 346 580 0.45825 1.6e-011 245 3 M5446_1.02 FOXD4L2 RTAAACA 2.9e-014 3.9e-017 -37.79 0.0 170 494 313 597 0.34413 1.6e-019 246 3 M5460_1.02 FOXL1 RTAAACA 2.9e-013 3.9e-016 -35.47 0.0 170 494 309 595 0.34413 1.6e-018 246 3 M5471_1.02 FOXO6 GTAAACATGTTTAC 2.5e0000 3.4e-003 -5.68 0.0 111 487 86 248 0.22793 1.4e-005 243 3 M5480_1.02 GBX1 RBTAATTRGB 3.4e-004 4.6e-007 -14.59 0.0 261 491 364 554 0.53157 1.9e-009 245 3 M5481_1.02 GBX2 NYTAATTRSB 7.4e-006 1.0e-008 -18.42 0.0 261 491 380 570 0.53157 4.1e-011 245 3 M5502_1.02 GSX1 NBTAATKRSN 8.6e-005 1.2e-007 -15.97 0.0 303 491 435 590 0.61711 4.8e-010 245 3 M5503_1.02 GSX2 DYTAATKRVN 1.1e-006 1.4e-009 -20.36 0.0 303 491 441 588 0.61711 5.9e-012 245 3 M5518_1.02 HMX1 NDTTAATTGNT 2.9e-006 3.9e-009 -19.35 0.0 198 490 317 586 0.40408 1.6e-011 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 2.2e-005 3.0e-008 -17.34 0.0 206 490 328 595 0.42041 1.2e-010 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 1.2e-005 1.6e-008 -17.94 0.0 264 490 397 593 0.53878 6.7e-011 244 3 M5541_1.02 HOXB2 NNTAATKANN 1.7e-005 2.3e-008 -17.59 0.0 257 491 384 586 0.52342 9.4e-011 245 3 M5542_1.02 HOXB3 NYTAATKRNN 1.5e-004 2.0e-007 -15.42 0.0 261 491 384 585 0.53157 8.2e-010 245 3 M5543_1.02 HOXB5 NHTAATKRNN 3.4e-010 4.6e-013 -28.40 0.0 261 491 411 595 0.53157 1.9e-015 245 3 M5544_1.02 HOXC10 DTTTWATKDB 3.3e-026 4.5e-029 -65.27 0.0 235 491 425 595 0.47862 1.8e-031 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 4.0e-022 5.3e-025 -55.89 0.0 152 490 307 582 0.31020 2.2e-027 244 3 M5551_1.02 HOXC12 TTTTATTRC 4.2e-026 5.7e-029 -65.04 0.0 206 492 389 593 0.41870 2.3e-031 245 3 M5553_1.02 HOXC13 CYAATAAAAH 1.2e-022 1.7e-025 -57.04 0.0 179 491 346 589 0.36456 6.9e-028 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 6.5e-019 8.8e-022 -48.48 0.0 147 491 286 568 0.29939 3.6e-024 245 3 M5557_1.02 HOXD12 GTAATAAAA 5.7e-023 7.7e-026 -57.83 0.0 206 492 383 596 0.41870 3.1e-028 245 3 M5583_1.02 ISL2 YTAAKTGC 4.7e-006 6.4e-009 -18.87 0.0 205 493 327 593 0.41582 2.6e-011 246 3 M5587_1.02 JDP2 ATGASTCAT 1.3e-002 1.8e-005 -10.92 0.0 236 492 279 463 0.47967 7.4e-008 245 3 M5594_1.02 LBX2 CTBRANSTRATTA 1.6e0000 2.2e-003 -6.14 0.0 254 488 352 576 0.52049 8.9e-006 243 3 M5602_1.02 LHX9 YTAATTRN 4.4e-006 5.9e-009 -18.95 0.0 257 493 387 589 0.52130 2.4e-011 246 3 M5604_1.02 LMX1A YTAATTAA 8.1e-002 1.1e-004 -9.12 0.0 111 493 180 569 0.22515 4.4e-007 246 3 M5605_1.02 LMX1B TTAATTRN 1.8e-006 2.5e-009 -19.82 0.0 133 493 233 586 0.26978 1.0e-011 246 3 M5623_1.02 MEOX1 VSTAATTAHC 4.7e-005 6.4e-008 -16.57 0.0 303 491 425 573 0.61711 2.6e-010 245 3 M5624_1.02 MEOX2 DSTAATTAWN 1.4e-009 1.9e-012 -27.01 0.0 259 491 403 589 0.52749 7.6e-015 245 3 M5631_1.02 MIXL1 NBTAATTRVN 1.8e-005 2.4e-008 -17.54 0.0 121 491 215 587 0.24644 9.8e-011 245 3 M5635_1.02 MNX1 TTTAATTRNH 3.2e-012 4.4e-015 -33.06 0.0 153 491 285 595 0.31161 1.8e-017 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 3.5e-006 4.7e-009 -19.17 0.0 139 483 197 453 0.28778 2.0e-011 241 3 M5672_1.02 NOTO NBTAATTARN 5.9e-002 8.0e-005 -9.44 0.0 219 491 316 574 0.44603 3.2e-007 245 3 M5709_1.02 PAX7 WAATYRATTA 2.2e0000 2.9e-003 -5.84 0.0 239 491 246 416 0.48676 1.2e-005 245 3 M5714_1.02 PHOX2A TAATYYAATTA 4.0e-004 5.4e-007 -14.43 0.0 246 490 336 534 0.50204 2.2e-009 244 3 M5715_1.02 PHOX2B TAATYYAATTA 2.8e-004 3.8e-007 -14.79 0.0 214 490 307 544 0.43673 1.5e-009 244 3 M5735_1.02 POU3F3 WAATTWGCATAWW 4.9e0000 6.6e-003 -5.03 0.0 100 488 148 530 0.20492 2.7e-005 243 3 M5746_1.02 POU6F2 WTAATKAGST 1.8e-001 2.5e-004 -8.31 0.0 223 491 313 563 0.45418 1.0e-006 245 3 M5771_1.02 RAX DYTAATTRRY 5.7e-004 7.7e-007 -14.07 0.0 303 491 428 584 0.61711 3.2e-009 245 3 M5772_1.02 RAX2 BTAATTRR 4.6e-005 6.2e-008 -16.59 0.0 109 493 195 582 0.22110 2.5e-010 246 3 M5807_1.02 SHOX2 YTAATTRR 7.8e-004 1.1e-006 -13.76 0.0 109 493 190 584 0.22110 4.3e-009 246 3 M5941_1.02 UNCX NTAATYBAATTAN 2.0e-003 2.7e-006 -12.83 0.0 132 488 217 573 0.27049 1.1e-008 243 3 M5944_1.02 VAX1 YTAATTAN 4.6e-005 6.3e-008 -16.58 0.0 259 493 381 583 0.52535 2.6e-010 246 3 M5945_1.02 VAX2 YTAATTAN 1.2e-006 1.6e-009 -20.26 0.0 259 493 388 583 0.52535 6.4e-012 246 3 M5949_1.02 VSX1 YTAATTAN 2.6e-002 3.5e-005 -10.26 0.0 253 493 355 571 0.51318 1.4e-007 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 4.4e-002 6.0e-005 -9.73 0.0 253 489 220 336 0.51738 2.4e-007 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 7.0e-013 9.5e-016 -34.59 0.0 193 491 337 591 0.39308 3.9e-018 245 3 M6141_1.02 ALX1 TAATBYAATTAY 1.3e-001 1.7e-004 -8.68 0.0 127 489 197 558 0.25971 7.0e-007 244 3 M6152_1.02 ATF1 VTGACGTCAV 1.0e0000 1.4e-003 -6.61 0.0 319 491 364 489 0.64969 5.5e-006 245 3 M6157_1.02 BARX2 TYRWTAATKR 1.8e-001 2.4e-004 -8.33 0.0 249 491 345 568 0.50713 9.8e-007 245 3 M6166_1.02 CDC5L RWTAYRTTAAMWCVC 3.8e0000 5.1e-003 -5.28 0.0 174 486 243 546 0.35802 2.1e-005 242 3 M6167_1.02 CDX1 HCATAAAD 1.9e-013 2.6e-016 -35.89 0.0 203 493 353 597 0.41176 1.0e-018 246 3 M6181_1.02 CREM CRVTGACGTCA 3.6e-001 4.9e-004 -7.62 0.0 332 490 410 533 0.67755 2.0e-006 244 3 M6189_1.02 DLX3 GMTAATTRSW 2.9e-003 3.9e-006 -12.45 0.0 249 491 349 559 0.50713 1.6e-008 245 3 M6225_1.02 MECOM WAGAYAAGATAANAKW 2.9e-001 3.9e-004 -7.85 0.0 137 485 183 479 0.28247 1.6e-006 242 3 M6228_1.02 FOSB CTGACTCAYV 1.1e0000 1.6e-003 -6.47 0.0 203 491 292 579 0.41344 6.3e-006 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 1.4e-007 1.9e-010 -22.40 0.0 164 488 282 590 0.33607 7.7e-013 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 5.6e-009 7.6e-012 -25.60 0.0 154 486 253 534 0.31687 3.1e-014 242 3 M6237_1.02 FOXD3 AAACAAACA 1.3e-007 1.7e-010 -22.47 0.0 76 492 159 590 0.15447 7.1e-013 245 3 M6238_1.02 FOXF1 WAAATAAACAW 2.6e-011 3.5e-014 -30.98 0.0 220 490 358 578 0.44898 1.4e-016 244 3 M6239_1.02 FOXF2 HWADGTAAACA 1.0e-015 1.4e-018 -41.10 0.0 144 490 279 582 0.29388 5.8e-021 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 2.3e-012 3.1e-015 -33.42 0.0 145 491 272 589 0.29532 1.2e-017 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 5.8e-002 7.8e-005 -9.45 0.0 104 488 168 550 0.21311 3.2e-007 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 2.7e0000 3.7e-003 -5.61 0.0 70 488 124 596 0.14344 1.5e-005 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 2.9e-004 3.9e-007 -14.75 0.0 121 485 213 592 0.24948 1.6e-009 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 1.2e-007 1.6e-010 -22.56 0.0 138 488 250 596 0.28279 6.6e-013 243 3 M6247_1.02 FOXO4 MRTAAACAA 5.0e-005 6.8e-008 -16.50 0.0 126 492 220 590 0.25610 2.8e-010 245 3 M6249_1.02 FOXP3 AAWCAMATT 7.0e-002 9.5e-005 -9.26 0.0 58 492 112 590 0.11789 3.9e-007 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 8.8e-006 1.2e-008 -18.24 0.0 131 489 207 516 0.26789 4.9e-011 244 3 M6256_1.02 GATA4 RSWGATAAV 3.8e-011 5.2e-014 -30.59 0.0 154 492 282 594 0.31301 2.1e-016 245 3 M6257_1.02 GATA5 WVANWGATAABTYRRHK 9.0e-003 1.2e-005 -11.32 0.0 178 484 275 575 0.36777 5.0e-008 241 3 M6258_1.02 GATA6 NWGATAA 4.1e-014 5.6e-017 -37.42 0.0 208 494 355 586 0.42105 2.3e-019 246 3 M6277_1.02 HLF SKRTTACRYAAYH 2.3e0000 3.1e-003 -5.77 0.0 162 488 195 456 0.33197 1.3e-005 243 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 7.5e0000 1.0e-002 -4.59 0.0 128 486 181 530 0.26337 4.2e-005 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 1.1e0000 1.4e-003 -6.55 0.0 169 487 240 546 0.34702 5.9e-006 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 2.3e0000 3.1e-003 -5.77 0.0 201 487 271 537 0.41273 1.3e-005 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 1.2e-004 1.6e-007 -15.67 0.0 235 489 355 586 0.48057 6.4e-010 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 1.2e-015 1.6e-018 -40.99 0.0 102 490 222 588 0.20816 6.5e-021 244 3 M6292_1.02 HOXA5 CATTAATYAR 4.0e-003 5.4e-006 -12.13 0.0 263 491 368 566 0.53564 2.2e-008 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 5.9e-003 7.9e-006 -11.74 0.0 262 488 313 474 0.53689 3.3e-008 243 3 M6297_1.02 HOXB7 MATYAATCAA 3.7e-008 5.0e-011 -23.71 0.0 283 491 374 511 0.57637 2.1e-013 245 3 M6298_1.02 HOXB8 BMATTAATCAA 1.1e-004 1.5e-007 -15.72 0.0 208 490 275 488 0.42449 6.1e-010 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 2.1e0000 2.8e-003 -5.88 0.0 182 486 167 342 0.37449 1.2e-005 242 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 2.6e-004 3.5e-007 -14.86 0.0 151 487 244 567 0.31006 1.5e-009 243 3 M6303_1.02 HOXD4 TTAATTKW 3.7e-001 5.0e-004 -7.60 0.0 143 493 223 588 0.29006 2.0e-006 246 3 M6304_1.02 HOXD9 HMATNAAWYT 2.4e-012 3.3e-015 -33.35 0.0 229 491 379 591 0.46640 1.3e-017 245 3 M6315_1.02 ISL1 SYTAATR 4.3e0000 5.7e-003 -5.16 0.0 114 494 177 579 0.23077 2.3e-005 246 3 M6331_1.02 MAFB WGCTGACDS 3.9e0000 5.2e-003 -5.25 0.0 456 492 576 595 0.92683 2.1e-005 245 3 M6333_1.02 MAFG HATGACT 3.0e-003 4.0e-006 -12.42 0.0 234 494 348 591 0.47368 1.6e-008 246 3 M6343_1.02 MEIS1 CDTWAAVCTGTCA 4.5e-003 6.1e-006 -12.00 0.0 212 488 312 567 0.43443 2.5e-008 243 3 M6357_1.02 NANOG KTTAATGG 4.7e-004 6.4e-007 -14.27 0.0 245 493 361 584 0.49696 2.6e-009 246 3 M6359_1.02 NFE2L1 NATGACD 1.3e-005 1.7e-008 -17.87 0.0 256 494 387 597 0.51822 7.1e-011 246 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 1.8e-002 2.4e-005 -10.65 0.0 155 487 187 424 0.31828 9.8e-008 243 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 1.3e0000 1.8e-003 -6.33 0.0 213 489 296 561 0.43558 7.3e-006 244 3 M6376_1.02 NKX2-5 TYAAGTG 7.4e-002 1.0e-004 -9.21 0.0 140 494 225 595 0.28340 4.1e-007 246 3 M6380_1.02 NOBOX HTAATTRSY 3.3e-004 4.4e-007 -14.63 0.0 260 492 382 588 0.52846 1.8e-009 245 3 M6412_1.02 PBX1 VHMATCAATCAAWTH 8.8e-002 1.2e-004 -9.04 0.0 282 486 390 573 0.58025 4.9e-007 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 1.1e-001 1.5e-004 -8.80 0.0 280 486 394 584 0.57613 6.2e-007 242 3 M6415_1.02 PDX1 CTAATTACY 3.3e-006 4.4e-009 -19.24 0.0 214 492 308 531 0.43496 1.8e-011 245 3 M6419_1.02 PKNOX1 HATCARTCAABYB 2.4e-003 3.2e-006 -12.64 0.0 166 488 259 571 0.34016 1.3e-008 243 3 M6426_1.02 POU3F2 CATRAATWWT 4.7e-001 6.3e-004 -7.37 0.0 209 491 302 580 0.42566 2.6e-006 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 2.4e-003 3.3e-006 -12.62 0.0 74 488 131 533 0.15164 1.4e-008 243 3 M6429_1.02 POU6F1 CATAAWTTATGCR 5.8e-001 7.9e-004 -7.14 0.0 248 488 222 353 0.50820 3.3e-006 243 3 M6440_1.02 PRRX2 YTAATTR 5.3e-003 7.1e-006 -11.85 0.0 300 494 397 552 0.60729 2.9e-008 246 3 M6457_1.02 RUNX1 WAACCACARW 4.0e0000 5.5e-003 -5.21 0.0 167 491 250 593 0.34012 2.2e-005 245 3 M6471_1.02 SOX13 YATTGTTY 3.0e-001 4.1e-004 -7.81 0.0 47 493 93 590 0.09533 1.6e-006 246 3 M6477_1.02 SOX5 WAACAATR 5.8e-001 7.8e-004 -7.16 0.0 183 493 275 594 0.37120 3.2e-006 246 3 M6490_1.02 SRY DAAACAAWR 1.6e-002 2.1e-005 -10.77 0.0 140 492 229 595 0.28455 8.6e-008 245 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.8e-006 2.5e-009 -19.82 0.0 253 487 374 567 0.51951 1.0e-011 243 3 M6555_1.02 ZNF333 BKATAATGA 2.4e-001 3.2e-004 -8.05 0.0 228 492 295 520 0.46341 1.3e-006 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).