******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF837.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:39406788-39407288 1.0000 100 chr6:6007277-6007777 1.0000 100 chr10:122724589-12272508 1.0000 100 chr7:27175133-27175633 1.0000 100 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100 chr10:121310082-12131058 1.0000 100 chr5:171308465-171308965 1.0000 100 chr22:45979290-45979790 1.0000 100 chr15:69452755-69453255 1.0000 100 chr19:43640010-43640510 1.0000 100 chr1:231420877-231421377 1.0000 100 chr16:3443127-3443627 1.0000 100 chr1:228457343-228457843 1.0000 100 chr10:100744306-10074480 1.0000 100 chr11:118608683-11860918 1.0000 100 chr17:68291899-68292399 1.0000 100 chr22:39252508-39253008 1.0000 100 chr21:34887968-34888468 1.0000 100 chr8:37701038-37701538 1.0000 100 chr10:102421073-10242157 1.0000 100 chr1:94235632-94236132 1.0000 100 chr10:136139-136639 1.0000 100 chr10:72273917-72274417 1.0000 100 chr19:47229841-47230341 1.0000 100 chr17:29293691-29294191 1.0000 100 chr8:144428000-144428500 1.0000 100 chr10:102644858-10264535 1.0000 100 chr1:145281054-145281554 1.0000 100 chr1:31937347-31937847 1.0000 100 chr5:173327957-173328457 1.0000 100 chr17:45148440-45148940 1.0000 100 chr17:26619777-26620277 1.0000 100 chr19:41310148-41310648 1.0000 100 chr6:144215890-144216390 1.0000 100 chr19:35643439-35643939 1.0000 100 chr19:44207489-44207989 1.0000 100 chr15:70097461-70097961 1.0000 100 chr1:145287439-145287939 1.0000 100 chr9:95507824-95508324 1.0000 100 chr17:81397072-81397572 1.0000 100 chr1:146376878-146377378 1.0000 100 chr16:88811898-88812398 1.0000 100 chr10:70148468-70148968 1.0000 100 chr17:7484243-7484743 1.0000 100 chr16:29807607-29808107 1.0000 100 chr1:234608180-234608680 1.0000 100 chr15:67063934-67064434 1.0000 100 chr21:39313558-39314058 1.0000 100 chr16:74813005-74813505 1.0000 100 chr16:679399-679899 1.0000 100 chr17:77555815-77556315 1.0000 100 chr16:681706-682206 1.0000 100 chr19:36837909-36838409 1.0000 100 chr1:28648514-28649014 1.0000 100 chr16:58515066-58515566 1.0000 100 chr12:102120112-10212061 1.0000 100 chr14:90396942-90397442 1.0000 100 chr5:176591613-176592113 1.0000 100 chr16:70251566-70252066 1.0000 100 chr12:6937924-6938424 1.0000 100 chr16:684342-684842 1.0000 100 chr19:1748662-1749162 1.0000 100 chr2:131682409-131682909 1.0000 100 chr19:58367817-58368317 1.0000 100 chr17:36935068-36935568 1.0000 100 chr22:50525314-50525814 1.0000 100 chr16:25257954-25258454 1.0000 100 chr11:102110208-10211070 1.0000 100 chr17:81345257-81345757 1.0000 100 chr16:401764-402264 1.0000 100 chr11:65117350-65117850 1.0000 100 chrX:49073973-49074473 1.0000 100 chr17:26603646-26604146 1.0000 100 chr4:52712258-52712758 1.0000 100 chr22:19854931-19855431 1.0000 100 chr19:17334636-17335136 1.0000 100 chr5:137889075-137889575 1.0000 100 chr19:37655850-37656350 1.0000 100 chr17:48619836-48620336 1.0000 100 chr5:43064718-43065218 1.0000 100 chr11:62787177-62787677 1.0000 100 chr17:81393008-81393508 1.0000 100 chr6:4018180-4018680 1.0000 100 chr22:41446803-41447303 1.0000 100 chrUn_KI270466v1:187-687 1.0000 100 chr11:59550312-59550812 1.0000 100 chrUn_KI270467v1:2001-25 1.0000 100 chrUn_KI270467v1:2961-34 1.0000 100 chr1:125179946-125180446 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF837.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF837.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF837.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 599 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59900 N= 599 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.193 C 0.307 G 0.307 T 0.193 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF837.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.194 C 0.306 G 0.306 T 0.194 ******************************************************************************** ******************************************************************************** MOTIF ACACACACACAMMCACACACACAMACACA MEME-1 width = 29 sites = 107 llr = 1976 E-value = 1.6e-412 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACACACAMMCACACACACAMACACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7:7:826272536161818:917361717 pos.-specific C 27:817181736362728:8:92619192 probability G 111::::::::1:111::::1:::::::: matrix T 1111112:112:1212::22::113:11: bits 2.4 2.1 1.9 * 1.7 * Relative 1.4 * * Entropy 1.2 * * * *** * * (26.6 bits) 0.9 *** *** * ******* **** 0.7 ***** ******* * ******* ***** 0.5 ************* *************** 0.2 ***************************** 0.0 ----------------------------- Multilevel ACACACACACACACACACACACACACACA consensus T CACT AT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAMMCACACACACAMACACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr12:57111899-57112399 + 48 1.31e-18 CCACAAGACT acacacacacacacacacacacacacaca cacGTGCAGG chr1:28884765-28885265 + 68 1.31e-18 TCCCTGGCCA acacacacacacacacacacacacacaca caca chr1:205228884-205229384 - 72 1.31e-18 . ACACACACACACACACACACACACACACA CAAAGATCCC chr19:33796980-33797480 - 71 1.31e-18 C ACACACACACACACACACACACACACACA CACCGCGCGG chr6:11043156-11043656 + 49 1.31e-18 ACACGGGTGA acacacacacacacacacacacacacaca GCTTACTGTC chr6:134052066-134052566 + 1 1.31e-18 . acacacacacacacacacacacacacaca cGGGACTCAA chr5:140647763-140648263 - 48 1.31e-18 ACATACACAC ACACACACACACACACACACACACACACA CACCCGGCTT chr19:36837909-36838409 + 7 4.33e-18 acacac acacacacacacatacacacacacacaca caAGCTCCCG chr5:93582511-93583011 - 62 9.51e-18 GTCTATGGTC ACACACACACACACATACACACACACACA CTTACGCTCA chr7:148921071-148921571 + 62 2.13e-17 tcacacacgt acacacacacaaacatacacacacacaca cacaGAGTCA chr2:104871834-104872334 + 26 9.03e-17 CCACCCCCGA acacacacacacagacacacacacacaca cacTCTTCCT chr1:184386519-184387019 + 70 1.25e-16 acacacctgc ccacacacacacacacacacacacacaca ca chr6:40587273-40587773 + 30 2.09e-16 Ccacacacac acacacacacacacgcacacacacacaca cacGGATCAC chr4:141133264-141133764 - 3 2.77e-16 CACACATTAT ACACACACACACACACACACACAAACATA CA chr13:75480632-75481132 + 43 3.47e-16 GCGcacacgc acgcacacacacacacacacacacacaca cacGGCAAGC chr10:101442018-10144251 - 71 1.17e-15 C ACACACACACACACACACACATACACACA GAGACAGAGA chr7:26376836-26377336 - 3 2.28e-15 TATCACCCCC CTACACACACACACACACACACACACACA CA chr10:101830477-10183097 + 6 3.35e-15 CGCCc acacacacacacacacacacacacacacG CACGCAGGCC chr8:16825852-16826352 + 25 3.35e-15 acacacacgc acacacacacacacagacatacacacaca cacacaTTAA chr1:40374357-40374857 - 39 3.35e-15 TCTCTCTCTC ACACACACACACACACACACACACACACG CACGCACGCA chr7:155918713-155919213 - 8 8.77e-15 GCCACACACC ATGCACACACAAACACACACACAAACACA CTACAAA chr15:40092208-40092708 + 37 3.72e-14 acacgcacac acacagactcacacacacacacacacaca cacCCTTGTG chr10:110207399-11020789 + 32 3.72e-14 agcgagaccg acacacactcccatacactcacacacaca ACTGCAGGCA chr11:73376994-73377494 - 71 8.84e-14 G ACACACACACACACACACACACACTGACA CCACTTGACC chr20:52972221-52972721 - 3 1.44e-13 CCCCCCACAT ATGCACACACACACAAACACACACACACA CC chr14:104526959-10452745 + 24 1.44e-13 gcacacattt acacacacattcacacacatacacaccca cacactttca chr1:154607561-154608061 + 40 2.36e-13 CTTGGCAAGA CGACACACACCCACACACACACACTCACA AGACGCACAA chr17:57987608-57988108 - 4 9.50e-13 GGGCCCCCCA GCACACACACGCACACACACACACTCACA CAC chr3:134795190-134795690 + 17 2.65e-12 tctcccataa acacacacacacacatgcacacccacacc cacgcgcgcc chr19:36916418-36916918 - 20 2.65e-12 TCGTGCCGTC ACACTCACACACACAACCACACACCCACA CTAACTCCCA chr12:1604968-1605468 - 4 2.65e-12 ACACACACTT TCTCACACACTCACACACACACTCTCACA CAC chr21:33895247-33895747 - 61 4.67e-12 ACACACACGT AGACACACACACATGCACACACAAACACG CGCACGCACA chr20:63531997-63532497 - 46 5.36e-12 ACACACACAG ACATACACATAGACACAGACACACACACA GAGACACACA chr8:41827589-41828089 + 18 1.80e-11 acactcacgc acacacccacatacacacacgcactcaca catgcacaca chr16:57628749-57629249 - 10 1.80e-11 ACTCACATTC TCACTCACTCTCACACACTCACACTCACA CACTCTCAC chr14:95258707-95259207 - 46 2.34e-11 CTCCACGCAC ACACACCACACACCATACACACAAACACA TACTCCATTC chr9:95507824-95508324 - 12 2.66e-11 TCTTCCTCTC TCTCTCACACACACACACACACTCACTCA CACCTCTCCA chr10:96580053-96580553 - 12 3.90e-11 ACAGAGCAAG ACTCCGTCTCACACACACACACACACACA AAGATGAAGC chr10:122724589-12272508 + 17 6.43e-11 ctcacaccca ccactcacattcattcacatacacacaca ccactcactc chr8:123157495-123157995 + 22 9.29e-11 gggcgcgcgc gcgcacacacacacacacacacacacCCG CTGTTACGGC chr19:36528746-36529246 - 5 1.05e-10 GTACACAAGG TGTCACACACAATCACAATCACACACACA CTGT chr20:36092880-36093380 - 38 1.05e-10 AAGACACGCA AGGCACACACCCTCACACACGCACACACA GATGCACACC chr7:150360019-150360519 + 2 1.05e-10 c acacacagcccaccacacacacaaacacc acacacacac chr12:122094849-12209534 - 44 1.05e-10 CATACCCACA CCCCACACACACCAACACATACCAACACA CCACACACAA chr3:194352416-194352916 - 3 1.33e-10 CCCACTTATA CCACACACACCCCTACACCCACTTACACA CA chr18:63103558-63104058 - 43 1.50e-10 CACACCATAC ACACACAACACACTATACACACACACTCC ACACCACACA chr20:47257254-47257754 + 54 1.50e-10 tatataccat acacacacatacatatactcacatatacc caatatacaa chr12:132156878-13215737 + 70 1.90e-10 tgcacacact acacatacaccactacacacacaccatta ca chr22:45979290-45979790 + 47 3.03e-10 cacatacacc acacacaacacactccactcaaaaacaca ccacacacca chr1:236101433-236101933 - 39 4.26e-10 CACACATAGC ACTCACACACTCATGCACACTCACACCCA CATAACACAA chr3:13199797-13200297 + 31 4.77e-10 catgtacatc acacacaccacacactacacacgcacaca caccacacac chr6:89353076-89353576 - 4 5.97e-10 CAGAGCGGTG ACACCGTCACACACACACACAAAATAAAA AAT chr19:33274159-33274659 - 70 6.67e-10 AC ACTCATAACCACATGCACACACGCTCACA GACATGCACA chr1:203526928-203527428 + 19 7.45e-10 ctcacatacc acacctacacacactcacataagctcaca caccacacac chr8:38769681-38770181 - 65 8.31e-10 CCCACCC ATACCCACTCTCTCTCACACACACACACC ATACACACAG chr20:63535187-63535687 + 15 9.27e-10 TGTGTGacgc acgctcacacacacacagtcacaaacccc cacacatgcg chr2:172098602-172099102 - 9 9.27e-10 ACTAGCACAC ACTCACCCATACTGATACACACTCTCACA GTCACACT chr6:1622323-1622823 - 7 1.03e-09 GCGGGATAGT GGGCACACACACAGATACATACTCACACA TTGGCT chr19:38224291-38224791 + 48 1.15e-09 acaccttcgc acggactcacacagccacacgcacacaca cTGCAATACT chr16:85522948-85523448 - 10 1.59e-09 CACACAGGGC AGACACAACCACAGCCACATACACACAAC ACACACAGG chr12:6829005-6829505 - 63 4.94e-09 CACCACCCC CGACACACACACACACCCACGCACACTTC CCGTCCGAGA chr5:176591613-176592113 - 5 8.94e-09 CTCAACACCA ACACCATCATCACCACCATCACCATCACA ACCA chr22:50338947-50339447 - 41 2.31e-08 CACACACCCT ACACACACACCACATACAACACACACTAC ATACCACACG chr10:28678369-28678869 - 59 2.78e-08 GTACGCAGAG ACACACTCACACAGAGACTCAGATGCACA TTCAGAGATA chr14:103105049-10310554 - 7 3.05e-08 CACACCCTCA GCTCCATCACACACGCACACACACCCCCC AACTCT chr19:47229841-47230341 + 6 4.38e-08 AACAC ACACACACTACAACCTCCACACCCCAGCA CACGCAGGCA chr5:172707487-172707987 - 5 4.38e-08 CACACCCTCA GCTCACGCACACTCACACATACCGCCACA TCCT chr10:46525378-46525878 + 61 4.78e-08 accacacaca tcgcatacacacaatcacacacaatacac ataccccaca chr16:8590688-8591188 + 19 5.23e-08 accaacaaca acacaatcatcactaccatcaccatcatc atcaccacca chr16:1308293-1308793 - 3 5.71e-08 TGCCACCCTC ACTCACTCATTCCCTCCCTCACTTACTCA TT chr11:118608683-11860918 + 43 6.24e-08 CGCACCCCAG TCACACACACAACCCAGCTCACACACGTA CCCGTCACAC chr16:85572088-85572588 + 9 1.14e-07 cacacaca acacacaccacataccacacaacacacca cacacaccac chr20:26009868-26010368 - 69 1.60e-07 ACT GCACACACACGCAAAGTCACACATCCACC CTGGGACACG chr14:19374395-19374895 - 44 2.05e-07 AGACACACGG AGACATCACCACATGGACACACTGTCACA CTACCACAGG chr12:55972876-55973376 + 2 2.05e-07 t acacacaccacacacacatcatatacaca catataccac chr19:35105596-35106096 + 10 2.23e-07 tcaccgcta tcattaccatcaccatcaacaccatcaca tcaccaacaa chr4:189234913-189235413 - 14 2.84e-07 CCACAGAGCA CTACTACAACTACACCAAACACCACCACA GAGCACAAAT chr4:189233710-189234210 - 27 2.84e-07 CCACAGAGCA CTACTACAACTACACCAAACACCACCACA GAGCACTACT chr21:38913942-38914442 + 9 3.08e-07 catacaac acacaatatacacaacacacaccacatac cacacacaac chr17:29293691-29294191 - 27 3.33e-07 ATTATTATTT CTACAACCACAGCCACAACCACCACCACC ACCATCATCA chr19:47229134-47229634 + 66 3.33e-07 ATGCCATCAG ACCTCAACACACCACCAGACACCAACCCA CCCTCC chr6:44247084-44247584 - 40 3.61e-07 ACTCAAAAAA CCTCACCCACCACTACCCTCACCCTATAA AAATCCAGAG chr1:244834096-244834596 + 53 3.61e-07 AAAAACCTCA AAAAAAAAAATGTGACACATAAATACACA ACCTTAACTG chrUn_KI270467v1:2961-34 - 64 5.34e-07 CCCATAAT ACATATTATATACTGTACATAAAATATCA AAGGACACAA chr18:33579004-33579504 - 72 6.73e-07 . AGAGCACAATACCTACAAACACAAACGAA CTGGAGCCAC chr3:15098451-15098951 + 49 6.73e-07 CGCACAGACA CCACACAAAACACTCCGAACATCTCCACA CGAACTCAGA chr5:3323704-3324204 - 43 8.46e-07 ATCACACACC ACAGATACCACACAACACACACATCACAC ACCACAGATA chr19:36772267-36772767 + 1 9.12e-07 . ACACACCCACCCCGGGACACGCAGTCCAA CCACACAGTC chrUn_KI270467v1:3170-36 - 64 9.83e-07 ACCCAACC ATTTATAATAAACTCTACATAAAATACCA AAGTACCCAA chr16:89069109-89069609 - 61 1.06e-06 AACATCACCA CCATCATCATCACCATCATCACCATCACC ACCATCATCA chr1:29237094-29237594 - 11 1.23e-06 CACACACCAC ATACCCTAGACACTCCCCACACGTACACA GCGCACGGAC chr19:39997114-39997614 - 58 1.23e-06 GGCACCTGTC TCAGCCTCACACCCGCACCCACACCCGCC CAACCCGGTC chr1:10853336-10853836 + 10 1.32e-06 tgacaacca tcactatcatcaccaccgtcaccaccacc acaaccattg chr19:36851092-36851592 - 33 1.42e-06 CCCTCCATCA ACAATATCACCAACGCGCGCGCACACACA CACACGGAAG chr17:81253580-81254080 + 10 1.53e-06 ccatcccta ccaccatcaccatcatcatcaccgtcacc atcatcacca chr17:74514059-74514559 - 49 2.70e-06 ACATCACCTA TCACATGACCACCCCCACATGACATCACC CATTACATAT chr1:31937347-31937847 + 61 2.90e-06 ACTCATTCTA CCACCACCCCTCATGCCCACACGCTCCCC ACACACCCAT chr19:44246541-44247041 - 32 2.90e-06 ACTTCATTCT CATTAATCAATAAAACAAATAGAAAACCA GTAAGTCATG chrUn_KI270467v1:2001-25 - 23 3.33e-06 TACATGAAAG ATATATTATATTCTGTACATAAAATCTCA AAGTACACCA chr7:151842476-151842976 - 52 5.35e-06 CATCACTACC CATCACTACCTACCATCACTACTATCACA ACCATCACTA chr19:461967-462467 - 47 5.35e-06 CCCAGACACA GCGTACACCCTGCGCACAACACACACACC GCGCGCAGGT chr19:11355890-11356390 - 3 5.35e-06 GAAAGGTGCA CAGCGCACGACCACAGCCACACACACATA CA chrUn_KI270466v1:187-687 - 60 5.72e-06 TACCCCAAAT ATATATTATATGCTGTACATAAAATATCA AAGTACACAA chr1:148522504-148523004 - 26 5.72e-06 CGCCAGGGGA AAGCACGAACGCAGCCCCCCACTATCACA AATTATGCAG chr4:49709163-49709663 + 17 6.11e-06 tacccaaagt atgtattatatactgtacataaaatatca aagtacccaa chr19:42283181-42283681 - 49 1.24e-05 CACACCTCAC ATACCTGCTCACACAGATGTACAACCTCA CACGCTCACG chr17:58218720-58219220 - 46 1.24e-05 CCATCCACTC ACAGCCTCTAAGAACCCCTTACAGACCTA CCCAAGTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAMMCACACACACAMACACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57111899-57112399 1.3e-18 47_[+1]_24 chr1:28884765-28885265 1.3e-18 67_[+1]_4 chr1:205228884-205229384 1.3e-18 71_[-1] chr19:33796980-33797480 1.3e-18 70_[-1]_1 chr6:11043156-11043656 1.3e-18 48_[+1]_23 chr6:134052066-134052566 1.3e-18 [+1]_71 chr5:140647763-140648263 1.3e-18 47_[-1]_24 chr19:36837909-36838409 4.3e-18 6_[+1]_65 chr5:93582511-93583011 9.5e-18 61_[-1]_10 chr7:148921071-148921571 2.1e-17 61_[+1]_10 chr2:104871834-104872334 9e-17 25_[+1]_46 chr1:184386519-184387019 1.2e-16 69_[+1]_2 chr6:40587273-40587773 2.1e-16 29_[+1]_42 chr4:141133264-141133764 2.8e-16 2_[-1]_69 chr13:75480632-75481132 3.5e-16 42_[+1]_29 chr10:101442018-10144251 1.2e-15 70_[-1]_1 chr7:26376836-26377336 2.3e-15 2_[-1]_69 chr10:101830477-10183097 3.3e-15 5_[+1]_66 chr8:16825852-16826352 3.3e-15 24_[+1]_47 chr1:40374357-40374857 3.3e-15 38_[-1]_33 chr7:155918713-155919213 8.8e-15 7_[-1]_64 chr15:40092208-40092708 3.7e-14 36_[+1]_35 chr10:110207399-11020789 3.7e-14 31_[+1]_40 chr11:73376994-73377494 8.8e-14 70_[-1]_1 chr20:52972221-52972721 1.4e-13 2_[-1]_69 chr14:104526959-10452745 1.4e-13 23_[+1]_48 chr1:154607561-154608061 2.4e-13 39_[+1]_32 chr17:57987608-57988108 9.5e-13 3_[-1]_68 chr3:134795190-134795690 2.6e-12 16_[+1]_55 chr19:36916418-36916918 2.6e-12 19_[-1]_52 chr12:1604968-1605468 2.6e-12 3_[-1]_68 chr21:33895247-33895747 4.7e-12 60_[-1]_11 chr20:63531997-63532497 5.4e-12 45_[-1]_26 chr8:41827589-41828089 1.8e-11 17_[+1]_54 chr16:57628749-57629249 1.8e-11 9_[-1]_62 chr14:95258707-95259207 2.3e-11 45_[-1]_26 chr9:95507824-95508324 2.7e-11 11_[-1]_60 chr10:96580053-96580553 3.9e-11 11_[-1]_60 chr10:122724589-12272508 6.4e-11 16_[+1]_55 chr8:123157495-123157995 9.3e-11 21_[+1]_50 chr19:36528746-36529246 1e-10 4_[-1]_67 chr20:36092880-36093380 1e-10 37_[-1]_34 chr7:150360019-150360519 1e-10 1_[+1]_70 chr12:122094849-12209534 1e-10 43_[-1]_28 chr3:194352416-194352916 1.3e-10 2_[-1]_69 chr18:63103558-63104058 1.5e-10 42_[-1]_29 chr20:47257254-47257754 1.5e-10 53_[+1]_18 chr12:132156878-13215737 1.9e-10 69_[+1]_2 chr22:45979290-45979790 3e-10 46_[+1]_25 chr1:236101433-236101933 4.3e-10 38_[-1]_33 chr3:13199797-13200297 4.8e-10 30_[+1]_41 chr6:89353076-89353576 6e-10 3_[-1]_68 chr19:33274159-33274659 6.7e-10 69_[-1]_2 chr1:203526928-203527428 7.4e-10 18_[+1]_53 chr8:38769681-38770181 8.3e-10 64_[-1]_7 chr20:63535187-63535687 9.3e-10 14_[+1]_57 chr2:172098602-172099102 9.3e-10 8_[-1]_63 chr6:1622323-1622823 1e-09 6_[-1]_65 chr19:38224291-38224791 1.2e-09 47_[+1]_24 chr16:85522948-85523448 1.6e-09 9_[-1]_62 chr12:6829005-6829505 4.9e-09 62_[-1]_9 chr5:176591613-176592113 8.9e-09 4_[-1]_67 chr22:50338947-50339447 2.3e-08 40_[-1]_31 chr10:28678369-28678869 2.8e-08 58_[-1]_13 chr14:103105049-10310554 3e-08 6_[-1]_65 chr19:47229841-47230341 4.4e-08 5_[+1]_66 chr5:172707487-172707987 4.4e-08 4_[-1]_67 chr10:46525378-46525878 4.8e-08 60_[+1]_11 chr16:8590688-8591188 5.2e-08 18_[+1]_53 chr16:1308293-1308793 5.7e-08 2_[-1]_69 chr11:118608683-11860918 6.2e-08 42_[+1]_29 chr16:85572088-85572588 1.1e-07 8_[+1]_63 chr20:26009868-26010368 1.6e-07 68_[-1]_3 chr14:19374395-19374895 2.1e-07 43_[-1]_28 chr12:55972876-55973376 2.1e-07 1_[+1]_70 chr19:35105596-35106096 2.2e-07 9_[+1]_62 chr4:189234913-189235413 2.8e-07 13_[-1]_58 chr4:189233710-189234210 2.8e-07 26_[-1]_45 chr21:38913942-38914442 3.1e-07 8_[+1]_63 chr17:29293691-29294191 3.3e-07 26_[-1]_45 chr19:47229134-47229634 3.3e-07 65_[+1]_6 chr6:44247084-44247584 3.6e-07 39_[-1]_32 chr1:244834096-244834596 3.6e-07 52_[+1]_19 chrUn_KI270467v1:2961-34 5.3e-07 63_[-1]_8 chr18:33579004-33579504 6.7e-07 71_[-1] chr3:15098451-15098951 6.7e-07 48_[+1]_23 chr5:3323704-3324204 8.5e-07 42_[-1]_29 chr19:36772267-36772767 9.1e-07 [+1]_71 chrUn_KI270467v1:3170-36 9.8e-07 63_[-1]_8 chr16:89069109-89069609 1.1e-06 60_[-1]_11 chr1:29237094-29237594 1.2e-06 10_[-1]_61 chr19:39997114-39997614 1.2e-06 57_[-1]_14 chr1:10853336-10853836 1.3e-06 9_[+1]_62 chr19:36851092-36851592 1.4e-06 32_[-1]_39 chr17:81253580-81254080 1.5e-06 9_[+1]_62 chr17:74514059-74514559 2.7e-06 48_[-1]_23 chr1:31937347-31937847 2.9e-06 60_[+1]_11 chr19:44246541-44247041 2.9e-06 31_[-1]_40 chrUn_KI270467v1:2001-25 3.3e-06 22_[-1]_49 chr7:151842476-151842976 5.3e-06 51_[-1]_20 chr19:461967-462467 5.3e-06 46_[-1]_25 chr19:11355890-11356390 5.3e-06 2_[-1]_69 chrUn_KI270466v1:187-687 5.7e-06 59_[-1]_12 chr1:148522504-148523004 5.7e-06 25_[-1]_46 chr4:49709163-49709663 6.1e-06 16_[+1]_55 chr19:42283181-42283681 1.2e-05 48_[-1]_23 chr17:58218720-58219220 1.2e-05 45_[-1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAMMCACACACACAMACACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACACACAMMCACACACACAMACACA width=29 seqs=107 chr12:57111899-57112399 ( 48) ACACACACACACACACACACACACACACA 1 chr1:28884765-28885265 ( 68) ACACACACACACACACACACACACACACA 1 chr1:205228884-205229384 ( 72) ACACACACACACACACACACACACACACA 1 chr19:33796980-33797480 ( 71) ACACACACACACACACACACACACACACA 1 chr6:11043156-11043656 ( 49) ACACACACACACACACACACACACACACA 1 chr6:134052066-134052566 ( 1) ACACACACACACACACACACACACACACA 1 chr5:140647763-140648263 ( 48) ACACACACACACACACACACACACACACA 1 chr19:36837909-36838409 ( 7) ACACACACACACATACACACACACACACA 1 chr5:93582511-93583011 ( 62) ACACACACACACACATACACACACACACA 1 chr7:148921071-148921571 ( 62) ACACACACACAAACATACACACACACACA 1 chr2:104871834-104872334 ( 26) ACACACACACACAGACACACACACACACA 1 chr1:184386519-184387019 ( 70) CCACACACACACACACACACACACACACA 1 chr6:40587273-40587773 ( 30) ACACACACACACACGCACACACACACACA 1 chr4:141133264-141133764 ( 3) ACACACACACACACACACACACAAACATA 1 chr13:75480632-75481132 ( 43) ACGCACACACACACACACACACACACACA 1 chr10:101442018-10144251 ( 71) ACACACACACACACACACACATACACACA 1 chr7:26376836-26377336 ( 3) CTACACACACACACACACACACACACACA 1 chr10:101830477-10183097 ( 6) ACACACACACACACACACACACACACACG 1 chr8:16825852-16826352 ( 25) ACACACACACACACAGACATACACACACA 1 chr1:40374357-40374857 ( 39) ACACACACACACACACACACACACACACG 1 chr7:155918713-155919213 ( 8) ATGCACACACAAACACACACACAAACACA 1 chr15:40092208-40092708 ( 37) ACACAGACTCACACACACACACACACACA 1 chr10:110207399-11020789 ( 32) ACACACACTCCCATACACTCACACACACA 1 chr11:73376994-73377494 ( 71) ACACACACACACACACACACACACTGACA 1 chr20:52972221-52972721 ( 3) ATGCACACACACACAAACACACACACACA 1 chr14:104526959-10452745 ( 24) ACACACACATTCACACACATACACACCCA 1 chr1:154607561-154608061 ( 40) CGACACACACCCACACACACACACTCACA 1 chr17:57987608-57988108 ( 4) GCACACACACGCACACACACACACTCACA 1 chr3:134795190-134795690 ( 17) ACACACACACACACATGCACACCCACACC 1 chr19:36916418-36916918 ( 20) ACACTCACACACACAACCACACACCCACA 1 chr12:1604968-1605468 ( 4) TCTCACACACTCACACACACACTCTCACA 1 chr21:33895247-33895747 ( 61) AGACACACACACATGCACACACAAACACG 1 chr20:63531997-63532497 ( 46) ACATACACATAGACACAGACACACACACA 1 chr8:41827589-41828089 ( 18) ACACACCCACATACACACACGCACTCACA 1 chr16:57628749-57629249 ( 10) TCACTCACTCTCACACACTCACACTCACA 1 chr14:95258707-95259207 ( 46) ACACACCACACACCATACACACAAACACA 1 chr9:95507824-95508324 ( 12) TCTCTCACACACACACACACACTCACTCA 1 chr10:96580053-96580553 ( 12) ACTCCGTCTCACACACACACACACACACA 1 chr10:122724589-12272508 ( 17) CCACTCACATTCATTCACATACACACACA 1 chr8:123157495-123157995 ( 22) GCGCACACACACACACACACACACACCCG 1 chr19:36528746-36529246 ( 5) TGTCACACACAATCACAATCACACACACA 1 chr20:36092880-36093380 ( 38) AGGCACACACCCTCACACACGCACACACA 1 chr7:150360019-150360519 ( 2) ACACACAGCCCACCACACACACAAACACC 1 chr12:122094849-12209534 ( 44) CCCCACACACACCAACACATACCAACACA 1 chr3:194352416-194352916 ( 3) CCACACACACCCCTACACCCACTTACACA 1 chr18:63103558-63104058 ( 43) ACACACAACACACTATACACACACACTCC 1 chr20:47257254-47257754 ( 54) ACACACACATACATATACTCACATATACC 1 chr12:132156878-13215737 ( 70) ACACATACACCACTACACACACACCATTA 1 chr22:45979290-45979790 ( 47) ACACACAACACACTCCACTCAAAAACACA 1 chr1:236101433-236101933 ( 39) ACTCACACACTCATGCACACTCACACCCA 1 chr3:13199797-13200297 ( 31) ACACACACCACACACTACACACGCACACA 1 chr6:89353076-89353576 ( 4) ACACCGTCACACACACACACAAAATAAAA 1 chr19:33274159-33274659 ( 70) ACTCATAACCACATGCACACACGCTCACA 1 chr1:203526928-203527428 ( 19) ACACCTACACACACTCACATAAGCTCACA 1 chr8:38769681-38770181 ( 65) ATACCCACTCTCTCTCACACACACACACC 1 chr20:63535187-63535687 ( 15) ACGCTCACACACACACAGTCACAAACCCC 1 chr2:172098602-172099102 ( 9) ACTCACCCATACTGATACACACTCTCACA 1 chr6:1622323-1622823 ( 7) GGGCACACACACAGATACATACTCACACA 1 chr19:38224291-38224791 ( 48) ACGGACTCACACAGCCACACGCACACACA 1 chr16:85522948-85523448 ( 10) AGACACAACCACAGCCACATACACACAAC 1 chr12:6829005-6829505 ( 63) CGACACACACACACACCCACGCACACTTC 1 chr5:176591613-176592113 ( 5) ACACCATCATCACCACCATCACCATCACA 1 chr22:50338947-50339447 ( 41) ACACACACACCACATACAACACACACTAC 1 chr10:28678369-28678869 ( 59) ACACACTCACACAGAGACTCAGATGCACA 1 chr14:103105049-10310554 ( 7) GCTCCATCACACACGCACACACACCCCCC 1 chr19:47229841-47230341 ( 6) ACACACACTACAACCTCCACACCCCAGCA 1 chr5:172707487-172707987 ( 5) GCTCACGCACACTCACACATACCGCCACA 1 chr10:46525378-46525878 ( 61) TCGCATACACACAATCACACACAATACAC 1 chr16:8590688-8591188 ( 19) ACACAATCATCACTACCATCACCATCATC 1 chr16:1308293-1308793 ( 3) ACTCACTCATTCCCTCCCTCACTTACTCA 1 chr11:118608683-11860918 ( 43) TCACACACACAACCCAGCTCACACACGTA 1 chr16:85572088-85572588 ( 9) ACACACACCACATACCACACAACACACCA 1 chr20:26009868-26010368 ( 69) GCACACACACGCAAAGTCACACATCCACC 1 chr14:19374395-19374895 ( 44) AGACATCACCACATGGACACACTGTCACA 1 chr12:55972876-55973376 ( 2) ACACACACCACACACACATCATATACACA 1 chr19:35105596-35106096 ( 10) TCATTACCATCACCATCAACACCATCACA 1 chr4:189234913-189235413 ( 14) CTACTACAACTACACCAAACACCACCACA 1 chr4:189233710-189234210 ( 27) CTACTACAACTACACCAAACACCACCACA 1 chr21:38913942-38914442 ( 9) ACACAATATACACAACACACACCACATAC 1 chr17:29293691-29294191 ( 27) CTACAACCACAGCCACAACCACCACCACC 1 chr19:47229134-47229634 ( 66) ACCTCAACACACCACCAGACACCAACCCA 1 chr6:44247084-44247584 ( 40) CCTCACCCACCACTACCCTCACCCTATAA 1 chr1:244834096-244834596 ( 53) AAAAAAAAAATGTGACACATAAATACACA 1 chrUn_KI270467v1:2961-34 ( 64) ACATATTATATACTGTACATAAAATATCA 1 chr18:33579004-33579504 ( 72) AGAGCACAATACCTACAAACACAAACGAA 1 chr3:15098451-15098951 ( 49) CCACACAAAACACTCCGAACATCTCCACA 1 chr5:3323704-3324204 ( 43) ACAGATACCACACAACACACACATCACAC 1 chr19:36772267-36772767 ( 1) ACACACCCACCCCGGGACACGCAGTCCAA 1 chrUn_KI270467v1:3170-36 ( 64) ATTTATAATAAACTCTACATAAAATACCA 1 chr16:89069109-89069609 ( 61) CCATCATCATCACCATCATCACCATCACC 1 chr1:29237094-29237594 ( 11) ATACCCTAGACACTCCCCACACGTACACA 1 chr19:39997114-39997614 ( 58) TCAGCCTCACACCCGCACCCACACCCGCC 1 chr1:10853336-10853836 ( 10) TCACTATCATCACCACCGTCACCACCACC 1 chr19:36851092-36851592 ( 33) ACAATATCACCAACGCGCGCGCACACACA 1 chr17:81253580-81254080 ( 10) CCACCATCACCATCATCATCACCGTCACC 1 chr17:74514059-74514559 ( 49) TCACATGACCACCCCCACATGACATCACC 1 chr1:31937347-31937847 ( 61) CCACCACCCCTCATGCCCACACGCTCCCC 1 chr19:44246541-44247041 ( 32) CATTAATCAATAAAACAAATAGAAAACCA 1 chrUn_KI270467v1:2001-25 ( 23) ATATATTATATTCTGTACATAAAATCTCA 1 chr7:151842476-151842976 ( 52) CATCACTACCTACCATCACTACTATCACA 1 chr19:461967-462467 ( 47) GCGTACACCCTGCGCACAACACACACACC 1 chr19:11355890-11356390 ( 3) CAGCGCACGACCACAGCCACACACACATA 1 chrUn_KI270466v1:187-687 ( 60) ATATATTATATGCTGTACATAAAATATCA 1 chr1:148522504-148523004 ( 26) AAGCACGAACGCAGCCCCCCACTATCACA 1 chr4:49709163-49709663 ( 17) ATGTATTATATACTGTACATAAAATATCA 1 chr19:42283181-42283681 ( 49) ATACCTGCTCACACAGATGTACAACCTCA 1 chr17:58218720-58219220 ( 46) ACAGCCTCTAAGAACCCCTTACAGACCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAMMCACACACACAMACACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43128 bayes= 9.21201 E= 1.6e-412 180 -87 -223 -105 -205 129 -187 -67 191 -403 -133 -56 -337 144 -271 -91 197 -113 -503 -105 -28 117 -345 -67 174 -145 -303 9 2 137 -503 -1339 188 -113 -403 -56 -5 119 -1339 -79 149 -23 -345 -20 67 101 -245 -337 158 17 -1339 -137 -56 87 -171 15 174 -87 -123 -179 -179 119 -223 -12 199 -71 -303 -437 -37 139 -303 -437 200 -271 -403 -28 -1339 142 -1339 -12 226 -1339 -223 -437 -91 147 -403 -279 184 -79 -271 -120 63 87 -271 -105 158 -104 -503 44 -67 149 -503 -437 188 -123 -303 -67 -120 147 -1339 -156 195 -51 -303 -1339 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAMMCACACACACAMACACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 107 E= 1.6e-412 0.672897 0.168224 0.065421 0.093458 0.046729 0.747664 0.084112 0.121495 0.728972 0.018692 0.121495 0.130841 0.018692 0.831776 0.046729 0.102804 0.757009 0.140187 0.009346 0.093458 0.158879 0.691589 0.028037 0.121495 0.644860 0.112150 0.037383 0.205607 0.196262 0.794393 0.009346 0.000000 0.710280 0.140187 0.018692 0.130841 0.186916 0.700935 0.000000 0.112150 0.542056 0.261682 0.028037 0.168224 0.308411 0.616822 0.056075 0.018692 0.579439 0.345794 0.000000 0.074766 0.130841 0.560748 0.093458 0.214953 0.644860 0.168224 0.130841 0.056075 0.056075 0.700935 0.065421 0.177570 0.766355 0.186916 0.037383 0.009346 0.149533 0.803738 0.037383 0.009346 0.775701 0.046729 0.018692 0.158879 0.000000 0.822430 0.000000 0.177570 0.925234 0.000000 0.065421 0.009346 0.102804 0.850467 0.018692 0.028037 0.691589 0.177570 0.046729 0.084112 0.299065 0.560748 0.046729 0.093458 0.579439 0.149533 0.009346 0.261682 0.121495 0.859813 0.009346 0.009346 0.710280 0.130841 0.037383 0.121495 0.084112 0.850467 0.000000 0.065421 0.747664 0.214953 0.037383 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACACACAMMCACACACACAMACACA MEME-1 regular expression -------------------------------------------------------------------------------- ACACAC[AT]CAC[AC][CA][AC][CT]ACACACACA[CA][AT]CAC[AC] -------------------------------------------------------------------------------- Time 420.16 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACAYACACAYACACACMCMM MEME-2 width = 22 sites = 100 llr = 1095 E-value = 1.1e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACAYACACAYACACACMCMM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 728262637372718:725243 pos.-specific C 281714:7:725:818253535 probability G :::2211:1:1:1111111111 matrix T 1:1:123111132:12:22321 bits 2.4 2.1 1.9 1.7 Relative 1.4 Entropy 1.2 * * * * (15.8 bits) 0.9 *** * * ***** 0.7 *** ***** ***** 0.5 ***** *********** ** 0.2 ********************** 0.0 ---------------------- Multilevel ACACACACACACACACACACAC consensus GTTA A TT CACTCA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAYACACAYACACACMCMM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:184386519-184387019 + 44 7.35e-12 GCGCGCGCAC ACACGTacacacacacacacac ctgcccacac chr9:95507824-95508324 - 49 5.11e-11 CGCCCCCGCC ACACACAAACACACACACTCTC TTCCTCTCTC chr1:203526928-203527428 + 52 1.81e-10 ctcacacacc acacactcacacactcacacac cactcctaca chr8:38769681-38770181 - 22 6.93e-10 CACACACACC ACACAATCACACACACACCACA CACCCTCACC chr1:236101433-236101933 - 76 9.93e-10 CTC ACACAAACACACTCACACCACA CACATAGCAC chr16:57628749-57629249 - 43 1.99e-09 ACGCTCAGTC ACACTCTCACACTCACACTCAC ATTCTCACTC chr5:140647763-140648263 - 77 2.79e-09 CG TCACACATACATACATACACAC ACACACACAC chr12:1604968-1605468 - 63 4.55e-09 TCTCACATAC ACTCACTCTCACACACACACAC CCTCCCCCAC chr20:63531997-63532497 - 5 8.52e-09 AAAACAGATC ACACGGACACACACAGACACAC ACAC chr10:46525378-46525878 + 2 8.52e-09 c acacacaaacacacacatcgca cacacaacca chr10:122724589-12272508 + 48 8.52e-09 cacacacacc actcactcacactcacacccac cactcacatt chr8:41827589-41828089 + 54 9.94e-09 acacatgcac acacgcatacatacacccactc acacacccca chr12:57111899-57112399 + 7 1.16e-08 GCCAAG AAACAAACACACACATGCACAA CTTCCCTGAC chr20:47257254-47257754 + 29 1.34e-08 caaatacaac acacacatacatacttatatac catacacaca chr7:155918713-155919213 - 49 1.81e-08 CACACAATGC ACACTCAAACACACATGCACAC ATGCCACACA chr20:52972221-52972721 - 35 2.09e-08 GCTTCCTCGC ACACACACACTCACACCCCCCA CATATGCACA chr16:86509112-86509612 - 48 3.70e-08 GCTCTTGTCC ACACATTAGCACACACATACAT GTCTTGATGC chr5:172707487-172707987 - 71 4.25e-08 CACACCCC CCACACTCACATACACACTTGC AGTCACTTGC chr21:38913942-38914442 + 69 4.25e-08 accacacaca acacatacaaatgcataccaca taccacacac chr16:85572088-85572588 + 65 6.41e-08 tccacacaca acacacaatcacacaccacaca caccacatac chr22:45979290-45979790 + 8 8.38e-08 acacacg acacacacacgcacacacgaca caaaacacac chr3:13199797-13200297 + 60 8.38e-08 cacgcacaca caccacacacatacacacaaca tgcatataca chr19:39997114-39997614 - 3 8.38e-08 CGTCGCGCGC ACACACACACATACACCGTCTG CC chr14:104526959-10452745 + 54 8.38e-08 acacacccac acactttcacagacatacaccc acattttcac chr14:103105049-10310554 - 73 1.24e-07 TCTGCC AAACACGCACACACACAGCCTC AGCTCTCCAC chr14:95258707-95259207 - 7 1.24e-07 TTCACTCACA AACCACACATATACACATATCC TCCACA chr1:244834096-244834596 + 8 1.24e-07 TTCAAAA ACAAAAACAAAAAAACCCCCCC CGCCCCCGCA chr19:36851092-36851592 - 65 1.60e-07 CACAATGACA ACAAATTCACACGCACCCTCCA TCAACAATAT chr21:33895247-33895747 - 12 1.60e-07 ATGCACGCAA ACCCATGCACACACACGCACAC GTGCACGCAC chr19:38224291-38224791 + 20 2.34e-07 tcacagcctc ccacacactcctactcacacac cttcgcacgg chr12:55972876-55973376 + 61 2.34e-07 tatacatata ccaaatacacacacaccacata cacaccatat chr3:194352416-194352916 - 37 2.65e-07 CACGAGACAT ACTCATGCATATACACACCCAC TTATACCACA chr16:85522948-85523448 - 44 2.99e-07 ACACACAGCC ACAGGCACACGTGCACACACAC AGGGCAGACA chr5:119324241-119324741 - 74 6.12e-07 AAGCG AAACAGAAAAACAAACCATAAA AACTCCCTAG chr4:189234913-189235413 - 56 9.69e-07 ACCACAGAGC ACAAATGCAACTACACCAAACA CCACCACAGA chr7:150360019-150360519 + 31 9.69e-07 cacaaacacc acacacacacaAaaataagtga ctcatcctca chr12:98516748-98517248 - 26 9.69e-07 AACCCCGTCT CTACTAAAAAATACACAAATCA GCCGGGCGTG chr10:100286277-10028677 + 51 1.21e-06 GTGAGCCACC ACACACTCAACCTCGCCCACCC GAGACGGAGC chr20:63535187-63535687 + 62 1.69e-06 cgcacagttc acccgcacacctgaacacacac gcgcatgtgt chr7:148921071-148921571 + 38 1.69e-06 TCTGCCcaca cacagcacacacactcacacac gtacacacac chr2:172098602-172099102 - 73 1.69e-06 GCGCGC GCAAACACACAATCACACACTG AGCACACTGT chr19:11355890-11356390 - 42 1.69e-06 GGACCATGAC ACAGACTCACAATGCCACACAA GAAAGGTGCA chr19:47229134-47229634 + 38 1.88e-06 CACACGTAGA TCAGGCACACACAGACACATGC CATCAGACCT chr12:122094849-12209534 - 15 1.88e-06 ACACCACACA CAACATACACCAACACCACCCC ACAGACACCA chr12:132156878-13215737 + 10 2.09e-06 gcacacact acaccactacacacacactaca cacattacac chr6:16759815-16760315 + 1 2.33e-06 . acactcactcacactcacGCCG CGCTCCGACA chr19:36772267-36772767 + 76 2.59e-06 ACGAGGGTCG TCCAGGACACACACACCCACTC CGG chr18:63103558-63104058 - 16 2.59e-06 ACTCCACACC ACACACACAACATACCATACCC CACACACCAT chrUn_KI270467v1:2961-34 - 38 3.19e-06 ATATCAAAGG ACACAAAATAAATATTATATAC TGTACATAAA chr1:28884765-28885265 + 29 3.19e-06 AATGCACTCC CCACGCACAAATTCAGAAACGC AGAGCCCTCC chr1:225427063-225427563 + 46 3.19e-06 TTTAGCAGGA ACACGCACACCCGCCTAAATAC CCGATTTTTG chr19:33274159-33274659 - 39 3.92e-06 AGACATGCAC ACACATGTGCACAGACACATAG GTACACCTGC chr16:75565172-75565672 - 7 3.92e-06 AGACTCCGCC TCAAAAAAAAATGCACATTTGA GGAGTG chr5:176591613-176592113 - 71 5.31e-06 TCACCTCA ACACCAACACCATCATCACCAC CATCACCATC chr19:40827007-40827507 + 34 5.87e-06 CTGCCACACA ACACACGCTAGTACACAGCAAC CCAGCAGACA chr17:8173025-8173525 + 47 6.48e-06 CCAGAAAGCA ACAAAAACCAAATCACAATTTT CAAGAACAAA chr10:110207399-11020789 + 2 7.14e-06 C TCCcatacacacagactcacag cgagaccgac chr4:49709163-49709663 - 53 7.14e-06 TATTTTATGT ACAGTATATAATACATACTTTG GGTACTTTGA chr17:26619777-26620277 + 38 7.88e-06 cagaaaagct aaacagaagcattctcagaaac ttctttgtga chr19:37371075-37371575 - 50 7.88e-06 AGTTGGTAAT ACAGTGAAACACACACGGCCTC CCCAGCGACT chr6:6007277-6007777 + 79 7.88e-06 CAGCCCGGCC CCCCGCACGAGcacacacacac chr11:62665052-62665552 - 79 8.68e-06 . ACAGCTAAAACCACACTTACTA GCTCACCACC chr6:32984511-32985011 + 77 1.05e-05 ACAGCAGAGC ACACGTGCACTTGCAGACATAC AG chr11:118608683-11860918 + 14 1.16e-05 CACCCCAGTC ACACAGCCTACCTCACACACGC ACCCCAGTCA chr4:189233710-189234210 - 1 1.16e-05 ACCACAGAGC ACTACTACAACTACACCAAACA chr10:28678369-28678869 - 36 1.27e-05 AGATGCACAT TCAGAGATACAAAGACACTTAG AGACAGACAC chr6:28747594-28748094 - 25 1.27e-05 GACTCCGGAG CTAGAGTAAAACACACAAATAT TTCGCCTGAA chr1:145281054-145281554 - 58 1.39e-05 GAGCCCGCAC CCTGAATTACAAAAACACTTAC GGCTCACCTA chr19:36916418-36916918 - 68 1.39e-05 ATCCCGCGCA ACCAAATATCACAATCACCCCA TCAGATTATT chrUn_KI270467v1:3170-36 + 35 1.53e-05 tattttatgg acagtatataatacacagtttg ggtactttgg chr19:47229841-47230341 + 70 1.68e-05 ATCATCCCGG AACAGCACACACAGACAACTCT CACCGACAA chr10:136139-136639 - 28 1.68e-05 CACAACGAGC ACTGGTACACACGAATAAAACA GGTACGGCGG chr1:154607561-154608061 + 69 2.01e-05 CACACTCACA AGACGCACAAATTCCTAAACCA GCAATGCTGC chr22:50338947-50339447 - 3 2.20e-05 CACGCACACC ACACACACCACATACCACACAC AC chr12:2255736-2256236 + 17 2.63e-05 CCCTGACCTG ACTAGTTTACAATCACACGACC CTGACCTGAC chr1:226309339-226309839 + 71 2.63e-05 GGCTCTACGC AAAGTGAAATACTCACAGTTCC CGAAACCC chr15:60374628-60375128 + 79 2.63e-05 GCTACGTGAG TCACAGAAGAGCTCACACTCAG chr14:19374395-19374895 - 79 2.87e-05 . ACACTATCACAGGGACACAGAC ACACGGAGAC chr1:161399471-161399971 + 4 3.13e-05 AGG AAAAAAACAAAAACGGGAACCA CTTtgtttcc chr6:32978979-32979479 - 63 3.13e-05 AAACCCCGTC TCCACTAAAACTACATAAACTA GCTGCGCACT chr1:224434899-224435399 - 1 3.73e-05 ACACTGGTGG ACTCACGCACGCACGCCAACTC chr6:32971104-32971604 - 49 3.73e-05 CAAAGACCAC AAAAGCTAAAATACGTCTCCCA AATTTGCACG chr17:26603646-26604146 + 37 4.06e-05 ttcgttggaa acggaatcatcttcacataaaa actatacaga chr17:81397072-81397572 - 24 4.06e-05 CTACGAAGCA ACAATTTTAATCTCCCACCCCC TGCGGGCGGA chr19:36837909-36838409 + 66 4.42e-05 AGCTCCTGCA TCAATTTCACTCTCGCATCCAC TGCTCCCATC chr16:1308293-1308793 - 36 4.42e-05 ATTCCCTCCC TCACTTACTCATTCATTGCCAC CCTCACTCAC chr10:29784217-29784717 - 76 4.81e-05 GGA TAACGAAAATAAACACTCTCAT TGCTGAGGAG chr19:39402260-39402760 + 52 4.81e-05 ACACCTTTGC ACCCGCAAGCACACATACTGTT CACACAACCG chr12:28190336-28190836 - 11 4.81e-05 CACCCCCAGC ACACAGACCCCTACGCGTACAC CCGAGGCACG chr3:134795190-134795690 + 65 5.23e-05 ccgcaccgcc ccacgcgcacacactcctgccc acgcccacgc chr19:42283181-42283681 - 79 5.23e-05 . ACACCCACGCTGTCACACCTCA CATACCTGCT chr8:16825852-16826352 + 64 5.68e-05 cacacaTTAA AAACCCTCTCCTTCACATCGAA GGGCTCTGAC chr1:31937347-31937847 + 39 6.17e-05 CTCTCTCCTC CCCCATTTACTCACTCATTCTA CCACCACCCC chr1:125179946-125180446 - 39 6.70e-05 TATCAACACC AAACGGAAAAAAACGGAATTAT CGAATGGAAT chr20:26009868-26010368 - 9 6.70e-05 CACCGGTTGT CCACATCCGCACACACAACGCG GCTCGTCC chr20:36092880-36093380 - 79 7.88e-05 . CCAGATACGCACGCACCACTCG CGAAGACACG chrUn_KI270466v1:187-687 + 31 9.24e-05 tattgtatgt acagtacataatacatattttg tgtactttga chr21:34889155-34889655 - 24 1.08e-04 GGCCCGGGCG CAGCGGTAAAAAACACCCATTA CAGAAACCGA chr1:244969781-244970281 - 57 1.47e-04 TGGGGACAGC ACGCGCGCGCACACACCCCTCG CCCCCTCCTG chr13:75480632-75481132 + 21 2.14e-04 CTGCGTTCAT ACACGCGCTCGCGCGcacacgc acgcacacac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAYACACAYACACACMCMM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:184386519-184387019 7.4e-12 43_[+2]_35 chr9:95507824-95508324 5.1e-11 48_[-2]_30 chr1:203526928-203527428 1.8e-10 51_[+2]_27 chr8:38769681-38770181 6.9e-10 21_[-2]_57 chr1:236101433-236101933 9.9e-10 75_[-2]_3 chr16:57628749-57629249 2e-09 42_[-2]_36 chr5:140647763-140648263 2.8e-09 76_[-2]_2 chr12:1604968-1605468 4.5e-09 62_[-2]_16 chr20:63531997-63532497 8.5e-09 4_[-2]_74 chr10:46525378-46525878 8.5e-09 1_[+2]_77 chr10:122724589-12272508 8.5e-09 47_[+2]_31 chr8:41827589-41828089 9.9e-09 53_[+2]_25 chr12:57111899-57112399 1.2e-08 6_[+2]_72 chr20:47257254-47257754 1.3e-08 28_[+2]_50 chr7:155918713-155919213 1.8e-08 48_[-2]_30 chr20:52972221-52972721 2.1e-08 34_[-2]_44 chr16:86509112-86509612 3.7e-08 47_[-2]_31 chr5:172707487-172707987 4.3e-08 70_[-2]_8 chr21:38913942-38914442 4.3e-08 68_[+2]_10 chr16:85572088-85572588 6.4e-08 64_[+2]_14 chr22:45979290-45979790 8.4e-08 7_[+2]_71 chr3:13199797-13200297 8.4e-08 59_[+2]_19 chr19:39997114-39997614 8.4e-08 2_[-2]_76 chr14:104526959-10452745 8.4e-08 53_[+2]_25 chr14:103105049-10310554 1.2e-07 72_[-2]_6 chr14:95258707-95259207 1.2e-07 6_[-2]_72 chr1:244834096-244834596 1.2e-07 7_[+2]_71 chr19:36851092-36851592 1.6e-07 64_[-2]_14 chr21:33895247-33895747 1.6e-07 11_[-2]_67 chr19:38224291-38224791 2.3e-07 19_[+2]_59 chr12:55972876-55973376 2.3e-07 60_[+2]_18 chr3:194352416-194352916 2.6e-07 36_[-2]_42 chr16:85522948-85523448 3e-07 43_[-2]_35 chr5:119324241-119324741 6.1e-07 73_[-2]_5 chr4:189234913-189235413 9.7e-07 55_[-2]_23 chr7:150360019-150360519 9.7e-07 30_[+2]_48 chr12:98516748-98517248 9.7e-07 25_[-2]_53 chr10:100286277-10028677 1.2e-06 50_[+2]_28 chr20:63535187-63535687 1.7e-06 61_[+2]_17 chr7:148921071-148921571 1.7e-06 37_[+2]_41 chr2:172098602-172099102 1.7e-06 72_[-2]_6 chr19:11355890-11356390 1.7e-06 41_[-2]_37 chr19:47229134-47229634 1.9e-06 37_[+2]_41 chr12:122094849-12209534 1.9e-06 14_[-2]_64 chr12:132156878-13215737 2.1e-06 9_[+2]_69 chr6:16759815-16760315 2.3e-06 [+2]_78 chr19:36772267-36772767 2.6e-06 75_[+2]_3 chr18:63103558-63104058 2.6e-06 15_[-2]_63 chrUn_KI270467v1:2961-34 3.2e-06 37_[-2]_41 chr1:28884765-28885265 3.2e-06 28_[+2]_50 chr1:225427063-225427563 3.2e-06 45_[+2]_33 chr19:33274159-33274659 3.9e-06 38_[-2]_40 chr16:75565172-75565672 3.9e-06 6_[-2]_72 chr5:176591613-176592113 5.3e-06 70_[-2]_8 chr19:40827007-40827507 5.9e-06 33_[+2]_45 chr17:8173025-8173525 6.5e-06 46_[+2]_32 chr10:110207399-11020789 7.1e-06 1_[+2]_77 chr4:49709163-49709663 7.1e-06 52_[-2]_26 chr17:26619777-26620277 7.9e-06 37_[+2]_41 chr19:37371075-37371575 7.9e-06 49_[-2]_29 chr6:6007277-6007777 7.9e-06 78_[+2] chr11:62665052-62665552 8.7e-06 78_[-2] chr6:32984511-32985011 1.1e-05 76_[+2]_2 chr11:118608683-11860918 1.2e-05 13_[+2]_65 chr4:189233710-189234210 1.2e-05 [-2]_78 chr10:28678369-28678869 1.3e-05 35_[-2]_43 chr6:28747594-28748094 1.3e-05 24_[-2]_54 chr1:145281054-145281554 1.4e-05 57_[-2]_21 chr19:36916418-36916918 1.4e-05 67_[-2]_11 chrUn_KI270467v1:3170-36 1.5e-05 34_[+2]_44 chr19:47229841-47230341 1.7e-05 69_[+2]_9 chr10:136139-136639 1.7e-05 27_[-2]_51 chr1:154607561-154608061 2e-05 68_[+2]_10 chr22:50338947-50339447 2.2e-05 2_[-2]_76 chr12:2255736-2256236 2.6e-05 16_[+2]_62 chr1:226309339-226309839 2.6e-05 70_[+2]_8 chr15:60374628-60375128 2.6e-05 78_[+2] chr14:19374395-19374895 2.9e-05 78_[-2] chr1:161399471-161399971 3.1e-05 3_[+2]_75 chr6:32978979-32979479 3.1e-05 62_[-2]_16 chr1:224434899-224435399 3.7e-05 [-2]_78 chr6:32971104-32971604 3.7e-05 48_[-2]_30 chr17:26603646-26604146 4.1e-05 36_[+2]_42 chr17:81397072-81397572 4.1e-05 23_[-2]_55 chr19:36837909-36838409 4.4e-05 65_[+2]_13 chr16:1308293-1308793 4.4e-05 35_[-2]_43 chr10:29784217-29784717 4.8e-05 75_[-2]_3 chr19:39402260-39402760 4.8e-05 51_[+2]_27 chr12:28190336-28190836 4.8e-05 10_[-2]_68 chr3:134795190-134795690 5.2e-05 64_[+2]_14 chr19:42283181-42283681 5.2e-05 78_[-2] chr8:16825852-16826352 5.7e-05 63_[+2]_15 chr1:31937347-31937847 6.2e-05 38_[+2]_40 chr1:125179946-125180446 6.7e-05 38_[-2]_40 chr20:26009868-26010368 6.7e-05 8_[-2]_70 chr20:36092880-36093380 7.9e-05 78_[-2] chrUn_KI270466v1:187-687 9.2e-05 30_[+2]_48 chr21:34889155-34889655 0.00011 23_[-2]_55 chr1:244969781-244970281 0.00015 56_[-2]_22 chr13:75480632-75481132 0.00021 20_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAYACACAYACACACMCMM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACAYACACAYACACACMCMM width=22 seqs=100 chr1:184386519-184387019 ( 44) ACACGTACACACACACACACAC 1 chr9:95507824-95508324 ( 49) ACACACAAACACACACACTCTC 1 chr1:203526928-203527428 ( 52) ACACACTCACACACTCACACAC 1 chr8:38769681-38770181 ( 22) ACACAATCACACACACACCACA 1 chr1:236101433-236101933 ( 76) ACACAAACACACTCACACCACA 1 chr16:57628749-57629249 ( 43) ACACTCTCACACTCACACTCAC 1 chr5:140647763-140648263 ( 77) TCACACATACATACATACACAC 1 chr12:1604968-1605468 ( 63) ACTCACTCTCACACACACACAC 1 chr20:63531997-63532497 ( 5) ACACGGACACACACAGACACAC 1 chr10:46525378-46525878 ( 2) ACACACAAACACACACATCGCA 1 chr10:122724589-12272508 ( 48) ACTCACTCACACTCACACCCAC 1 chr8:41827589-41828089 ( 54) ACACGCATACATACACCCACTC 1 chr12:57111899-57112399 ( 7) AAACAAACACACACATGCACAA 1 chr20:47257254-47257754 ( 29) ACACACATACATACTTATATAC 1 chr7:155918713-155919213 ( 49) ACACTCAAACACACATGCACAC 1 chr20:52972221-52972721 ( 35) ACACACACACTCACACCCCCCA 1 chr16:86509112-86509612 ( 48) ACACATTAGCACACACATACAT 1 chr5:172707487-172707987 ( 71) CCACACTCACATACACACTTGC 1 chr21:38913942-38914442 ( 69) ACACATACAAATGCATACCACA 1 chr16:85572088-85572588 ( 65) ACACACAATCACACACCACACA 1 chr22:45979290-45979790 ( 8) ACACACACACGCACACACGACA 1 chr3:13199797-13200297 ( 60) CACCACACACATACACACAACA 1 chr19:39997114-39997614 ( 3) ACACACACACATACACCGTCTG 1 chr14:104526959-10452745 ( 54) ACACTTTCACAGACATACACCC 1 chr14:103105049-10310554 ( 73) AAACACGCACACACACAGCCTC 1 chr14:95258707-95259207 ( 7) AACCACACATATACACATATCC 1 chr1:244834096-244834596 ( 8) ACAAAAACAAAAAAACCCCCCC 1 chr19:36851092-36851592 ( 65) ACAAATTCACACGCACCCTCCA 1 chr21:33895247-33895747 ( 12) ACCCATGCACACACACGCACAC 1 chr19:38224291-38224791 ( 20) CCACACACTCCTACTCACACAC 1 chr12:55972876-55973376 ( 61) CCAAATACACACACACCACATA 1 chr3:194352416-194352916 ( 37) ACTCATGCATATACACACCCAC 1 chr16:85522948-85523448 ( 44) ACAGGCACACGTGCACACACAC 1 chr5:119324241-119324741 ( 74) AAACAGAAAAACAAACCATAAA 1 chr4:189234913-189235413 ( 56) ACAAATGCAACTACACCAAACA 1 chr7:150360019-150360519 ( 31) ACACACACACAAAAATAAGTGA 1 chr12:98516748-98517248 ( 26) CTACTAAAAAATACACAAATCA 1 chr10:100286277-10028677 ( 51) ACACACTCAACCTCGCCCACCC 1 chr20:63535187-63535687 ( 62) ACCCGCACACCTGAACACACAC 1 chr7:148921071-148921571 ( 38) CACAGCACACACACTCACACAC 1 chr2:172098602-172099102 ( 73) GCAAACACACAATCACACACTG 1 chr19:11355890-11356390 ( 42) ACAGACTCACAATGCCACACAA 1 chr19:47229134-47229634 ( 38) TCAGGCACACACAGACACATGC 1 chr12:122094849-12209534 ( 15) CAACATACACCAACACCACCCC 1 chr12:132156878-13215737 ( 10) ACACCACTACACACACACTACA 1 chr6:16759815-16760315 ( 1) ACACTCACTCACACTCACGCCG 1 chr19:36772267-36772767 ( 76) TCCAGGACACACACACCCACTC 1 chr18:63103558-63104058 ( 16) ACACACACAACATACCATACCC 1 chrUn_KI270467v1:2961-34 ( 38) ACACAAAATAAATATTATATAC 1 chr1:28884765-28885265 ( 29) CCACGCACAAATTCAGAAACGC 1 chr1:225427063-225427563 ( 46) ACACGCACACCCGCCTAAATAC 1 chr19:33274159-33274659 ( 39) ACACATGTGCACAGACACATAG 1 chr16:75565172-75565672 ( 7) TCAAAAAAAAATGCACATTTGA 1 chr5:176591613-176592113 ( 71) ACACCAACACCATCATCACCAC 1 chr19:40827007-40827507 ( 34) ACACACGCTAGTACACAGCAAC 1 chr17:8173025-8173525 ( 47) ACAAAAACCAAATCACAATTTT 1 chr10:110207399-11020789 ( 2) TCCCATACACACAGACTCACAG 1 chr4:49709163-49709663 ( 53) ACAGTATATAATACATACTTTG 1 chr17:26619777-26620277 ( 38) AAACAGAAGCATTCTCAGAAAC 1 chr19:37371075-37371575 ( 50) ACAGTGAAACACACACGGCCTC 1 chr6:6007277-6007777 ( 79) CCCCGCACGAGCACACACACAC 1 chr11:62665052-62665552 ( 79) ACAGCTAAAACCACACTTACTA 1 chr6:32984511-32985011 ( 77) ACACGTGCACTTGCAGACATAC 1 chr11:118608683-11860918 ( 14) ACACAGCCTACCTCACACACGC 1 chr4:189233710-189234210 ( 1) ACTACTACAACTACACCAAACA 1 chr10:28678369-28678869 ( 36) TCAGAGATACAAAGACACTTAG 1 chr6:28747594-28748094 ( 25) CTAGAGTAAAACACACAAATAT 1 chr1:145281054-145281554 ( 58) CCTGAATTACAAAAACACTTAC 1 chr19:36916418-36916918 ( 68) ACCAAATATCACAATCACCCCA 1 chrUn_KI270467v1:3170-36 ( 35) ACAGTATATAATACACAGTTTG 1 chr19:47229841-47230341 ( 70) AACAGCACACACAGACAACTCT 1 chr10:136139-136639 ( 28) ACTGGTACACACGAATAAAACA 1 chr1:154607561-154608061 ( 69) AGACGCACAAATTCCTAAACCA 1 chr22:50338947-50339447 ( 3) ACACACACCACATACCACACAC 1 chr12:2255736-2256236 ( 17) ACTAGTTTACAATCACACGACC 1 chr1:226309339-226309839 ( 71) AAAGTGAAATACTCACAGTTCC 1 chr15:60374628-60375128 ( 79) TCACAGAAGAGCTCACACTCAG 1 chr14:19374395-19374895 ( 79) ACACTATCACAGGGACACAGAC 1 chr1:161399471-161399971 ( 4) AAAAAAACAAAAACGGGAACCA 1 chr6:32978979-32979479 ( 63) TCCACTAAAACTACATAAACTA 1 chr1:224434899-224435399 ( 1) ACTCACGCACGCACGCCAACTC 1 chr6:32971104-32971604 ( 49) AAAAGCTAAAATACGTCTCCCA 1 chr17:26603646-26604146 ( 37) ACGGAATCATCTTCACATAAAA 1 chr17:81397072-81397572 ( 24) ACAATTTTAATCTCCCACCCCC 1 chr19:36837909-36838409 ( 66) TCAATTTCACTCTCGCATCCAC 1 chr16:1308293-1308793 ( 36) TCACTTACTCATTCATTGCCAC 1 chr10:29784217-29784717 ( 76) TAACGAAAATAAACACTCTCAT 1 chr19:39402260-39402760 ( 52) ACCCGCAAGCACACATACTGTT 1 chr12:28190336-28190836 ( 11) ACACAGACCCCTACGCGTACAC 1 chr3:134795190-134795690 ( 65) CCACGCGCACACACTCCTGCCC 1 chr19:42283181-42283681 ( 79) ACACCCACGCTGTCACACCTCA 1 chr8:16825852-16826352 ( 64) AAACCCTCTCCTTCACATCGAA 1 chr1:31937347-31937847 ( 39) CCCCATTTACTCACTCATTCTA 1 chr1:125179946-125180446 ( 39) AAACGGAAAAAAACGGAATTAT 1 chr20:26009868-26010368 ( 9) CCACATCCGCACACACAACGCG 1 chr20:36092880-36093380 ( 79) CCAGATACGCACGCACCACTCG 1 chrUn_KI270466v1:187-687 ( 31) ACAGTACATAATACATATTTTG 1 chr21:34889155-34889655 ( 24) CAGCGGTAAAAAACACCCATTA 1 chr1:244969781-244970281 ( 57) ACGCGCGCGCACACACCCCTCG 1 chr13:75480632-75481132 ( 21) ACACGCGCTCGCGCGCACACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAYACACAYACACACMCMM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 9.37422 E= 1.1e-074 190 -94 -493 -81 -27 140 -493 -327 197 -124 -335 -127 -10 113 -103 -1329 151 -213 -35 -47 -3 52 -124 31 163 -294 -148 37 37 108 -1329 -95 192 -335 -162 -47 58 111 -1329 -195 188 -94 -213 -169 -19 71 -335 63 175 -1329 -148 31 -95 144 -213 -1329 197 -235 -194 -95 -1329 133 -262 -10 185 -62 -235 -227 19 82 -194 -27 134 -24 -262 5 -27 82 -262 37 108 15 -213 -10 68 68 -124 -147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAYACACAYACACACMCMM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 100 E= 1.1e-074 0.720000 0.160000 0.010000 0.110000 0.160000 0.810000 0.010000 0.020000 0.760000 0.130000 0.030000 0.080000 0.180000 0.670000 0.150000 0.000000 0.550000 0.070000 0.240000 0.140000 0.190000 0.440000 0.130000 0.240000 0.600000 0.040000 0.110000 0.250000 0.250000 0.650000 0.000000 0.100000 0.730000 0.030000 0.100000 0.140000 0.290000 0.660000 0.000000 0.050000 0.710000 0.160000 0.070000 0.060000 0.170000 0.500000 0.030000 0.300000 0.650000 0.000000 0.110000 0.240000 0.100000 0.830000 0.070000 0.000000 0.760000 0.060000 0.080000 0.100000 0.000000 0.770000 0.050000 0.180000 0.700000 0.200000 0.060000 0.040000 0.220000 0.540000 0.080000 0.160000 0.490000 0.260000 0.050000 0.200000 0.160000 0.540000 0.050000 0.250000 0.410000 0.340000 0.070000 0.180000 0.310000 0.490000 0.130000 0.070000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAYACACAYACACACMCMM MEME-2 regular expression -------------------------------------------------------------------------------- ACAC[AG][CT][AT][CA]A[CA]A[CT][AT]CAC[AC][CA][ACT][CT][AC][CA] -------------------------------------------------------------------------------- Time 799.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GRVRRGGRGRGVARGRGRRRGG MEME-3 width = 22 sites = 144 llr = 1346 E-value = 3.6e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRVRRGGRGRGVARGRGRRRGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :536323534:36324144323 pos.-specific C ::3:11:1:1:3211211121: probability G a544577374a53454854477 matrix T :::12::1:1:::21::::2:1 bits 2.4 2.1 1.9 1.7 * * Relative 1.4 * * Entropy 1.2 * * (13.5 bits) 0.9 ** * 0.7 ** * **** * * * * 0.5 ** * **** * * **** ** 0.2 ******************* ** 0.0 ---------------------- Multilevel GGGAGGGAGGGGAGGGGGGGGG consensus AAGAAAGAA AGAAA AAA A sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVRRGGRGRGVARGRGRRRGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:155253478-155253978 + 59 1.10e-08 CAGGTTCTGG GGAAGGGAAAGGAGGAGAGGAG TCAGGAGACG chr20:31065649-31066149 + 45 1.10e-08 ccaccaaaat ggaaaggaaaggaatggaatgg aatggaatga chr7:27175133-27175633 - 63 1.77e-08 CTGAGGGTAT GGGAGGGAGGGGAAGAGGGGAG GGGACAGAGA chr21:32771737-32772237 + 13 2.76e-08 gagagagagc gagagagagagagagagagaga gcgagagaga chr1:155244583-155245083 + 67 2.76e-08 gagagcgagc gagagagagagagagagagaga ggagCCGGCG chr17:36935723-36936223 - 9 3.42e-08 GTGGCGTTGG GAAGAGGGAAGGAGGAGGGGGG GGTGCCGG chr1:40374357-40374857 + 68 3.42e-08 gtgtgtgtgt gagagagagagagagagaatga cgaggaggag chr17:7484243-7484743 - 76 4.22e-08 AAG GAAAAAAAAAGAAGGGAAAAGG AAAAGGTTTT chr5:159098627-159099127 + 18 4.22e-08 gcaggaagag gaaagagaaagaaaaaggaaaa agaaaaggag chr10:101442018-10144251 - 47 6.35e-08 TACACACAGA GACAGAGAGAGAGAGAGAGAGA GATTCTAATT chr22:41446803-41447303 - 1 1.63e-07 GCGGCGCTGT GACAGGGAGGGGAAGACGGGGA chr22:20495983-20496483 - 73 1.63e-07 GGGAAT GAGAGGGGGGGAGTAAGAGAGG AGAGAAGAGA chr10:41889520-41890020 + 74 1.63e-07 gaacccgagt gaaatggaatggaatggaatgg tatgg chr11:102110208-10211070 + 65 1.95e-07 CGCCGCCAGG GAAaagaaagggaggaaggaag gaacaagaaa chr16:25257954-25258454 + 2 2.33e-07 G GGGAAGGAGAGCACGGGAGCGG GGACTCCTGT chr21:39183016-39183516 - 79 2.33e-07 . GAGGAGGAGGGGCGGAGGGAGA CGCCCGAGGA chr1:234608180-234608680 - 4 2.76e-07 GGGAGAAAAG GGGACGGAGAGCAGAGGAAGGG TGG chr19:47608181-47608681 - 17 2.76e-07 GAGGATGAAG GAAATGGAGGGGATGGAGGGGA GTTCCCCCCG chr14:90396942-90397442 - 55 3.85e-07 TGCGAGCGAA GGGAGGAAGAGCAGAGGGAGCG AGGGTGGCTG chr5:93582511-93583011 - 23 3.85e-07 TCACACCCCA GAGGGGGAAGGGATGACGAGGG GGAGAACGCC chr20:31075487-31075987 + 5 3.85e-07 gaat ggaatggaatggaatggaatgg aatggacttc chrUn_GL000216v2:372-872 - 53 3.85e-07 GGAATGCAAT GGAATGGAATGGAATGGAATGG AATCAACATT chr6:1388127-1388627 - 58 4.53e-07 CTGGGAGAGG GAGGAGGAGAGCAGGAGGCCGG AGCTGGCGGG chr3:105366548-105367048 + 76 5.32e-07 TGCGTCCGGG GAAGTGGGGAGGAGACGGGAGG GAG chr2:131682409-131682909 - 23 8.44e-07 AACAGGGAGA GGCAGGGAAGGAGCAGGGAGGG TTCCCGGTGG chr15:60374628-60375128 - 26 8.44e-07 TCACCCTCCT GGAAGGGAACGGGAGGGAACGG ACCCTTCCCA chr16:1308293-1308793 + 58 8.44e-07 GAGTAAGTGA GGGAGGGAATGCGTGAGAGAGG GAAGGAATGA chr17:38730421-38730921 - 50 9.79e-07 TAAAATCAGT GGAAAGGGAAGGACACGGGAGG CCATCTAGGA chr7:149126314-149126814 + 25 1.13e-06 TGAGGGAGCT GACGGGAGGGGAAACGGAGGGG CAGGTGAACA chr18:22169445-22169945 - 68 1.13e-06 GCGACGAGTA GGGGTGGAGGGGAGGAAAGCGG GGAGATCGCG chr1:99850049-99850549 - 73 1.31e-06 GGGGAG GGGACGGGGAGAAACAGAAGGG GAAGGGCTGG chr6:32971104-32971604 + 9 1.31e-06 GTAGGTGT GAGTGGGGAGGGATTAGAAAGG TGCTTGGACG chrX:154398235-154398735 - 33 1.31e-06 TGGCTGCAAC GAAAAAGAGAGAGTCGGAACGG AAGACGAGAA chr20:58650954-58651454 + 53 1.31e-06 GCGAGGGACG GACAGGAAGAGGGCCAGGGGGG AACGCCAGAA chr10:110209299-11020979 - 54 1.31e-06 CGGGAAAACA GGCGAGAAGAGAAAGAAAAGAA CGCACCACCG chr5:173327957-173328457 - 74 1.51e-06 AGGAG GAGGAAGAGGGGAGCACAAAGG ATCCAGGTCT chr19:18438354-18438854 - 50 1.51e-06 GATGGGGGCG GACATGGGGAGCCAGGGGATGG GACTGCCTGG chr1:167935713-167936213 - 55 1.51e-06 GTTCACAGCG GGCAGGGAAAGCCGCGGGAAGG GTACTCCAGG chr7:120951115-120951615 - 72 1.74e-06 GTAGCAT GGGAGGGAAGGGGAAGGCGAGA TTCAGGGCTG chr17:49495804-49496304 + 39 3.38e-06 GCCAGACAAT GGGGGGGAGGGGCGTCGGAGGG AGAGGTTGGG chr10:17230161-17230661 + 1 3.38e-06 . GGAGGGGAAGGCGGTGGAGGGA GCGAGACAAA chr17:28725317-28725817 + 49 3.38e-06 GCCATACACT GGAAAGGAGGGAAGAGGAGGCT CTGCATTTCG chr6:24720324-24720824 + 37 3.84e-06 TGGTACTGGC GGCGGAGGGGGAAGGGAAAGGA AGCCCTGCGC chr1:183471829-183472329 + 39 3.84e-06 GAAATCGGCA GGAGTGATAAGAAGGGGGAAGA CTTTGAGTGT chr17:79810284-79810784 - 3 3.84e-06 GAGGCAAAGG GAGGAGGAAGGCCGCGGGAAGA AA chr5:181187742-181188242 + 19 4.35e-06 CGGGTGGTTG GGAATGGAAAGCAAAAGCGTAG ATGCCCTCTT chr6:32154422-32154922 - 16 4.92e-06 CAGCAGCAGC GGCAGGAAAGGCAACAGAAGCA GGACCCACGC chr10:101694458-10169495 - 74 5.56e-06 GTATG GGAAGAAGGAGGAATGGAGGGT CAGGGCTAGG chr17:8015893-8016393 - 76 5.56e-06 TGG GAGAGGGAAGGACTTAGGCGGA CTGGGGTGAG chr6:16759815-16760315 - 54 6.27e-06 TCCCGCAGGG GGCAGGGAAGGGGGCCGGACGG GCGGAGCGAG chr16:29805460-29805960 + 60 6.27e-06 GGCCGCTGGC GGAGGGAGGGGGAGTGGAATCG TTGGCGGGGG chr1:54052739-54053239 + 12 7.05e-06 GGGGAGCCGA GAAATGGGCTGCAAGGGAAGGG TCGCAGCCCG chr20:49278493-49278993 - 78 7.05e-06 A GAAGGGAAGGGAGGACCAGAGG TCTCCAACGA chr1:236065174-236065674 + 2 7.05e-06 C GGGAGGGGGAGCAGAGCGCGGG ACCCGCACCG chr16:29811493-29811993 - 22 7.93e-06 CCCTGGAAAG GACGGAGCGGGGACAGGAAAGG GAATTCCAAG chr17:38702335-38702835 + 25 7.93e-06 cgcATAGGGC GGCGGAGAGGGCACGAGCAGGG attgagcacc chr1:152109512-152110012 - 20 8.90e-06 CAGCTGCTGA GAGAGGAACCGGAGAAGAGAAG GCGCCAGGAG chr1:26921769-26922269 - 1 1.11e-05 CTCGAAGGCA GAGAAGGGCGGAAGGAGCGTGG chr15:81888821-81889321 - 55 1.24e-05 GCACTTGGAG GAGAGGAAGAGCATGAGTGATA TAATTGGGCT chr12:53390640-53391140 - 60 1.24e-05 TTTACAAAAT GAAACAAAGGGAAAGGGAGATA GAACAGATAC chr16:30698637-30699137 - 57 1.39e-05 ACCCGACCGC GAAAGGCTGAGAGAAGGGAGGG TTCGTGCCAC chr12:48105937-48106437 + 7 1.55e-05 GTGGCT GAAGAGGAGGGGGCTGGGGCAG GAGGTCAAAG chr17:77555815-77556315 - 57 1.72e-05 GGGCTCCAGG GGAAAGGGGTGGAGGGCAAGTG AGATGACAGC chr15:70097461-70097961 - 42 1.72e-05 CCGGGCCGAG GGGAAGGAAGGAAGCCGTAGAG CTCCCCGGTC chr1:152111464-152111964 - 6 1.72e-05 CAACTAAGGC GGGAGCAAGAGGAGAGGCGCGA GCAGC chr12:53097658-53098158 + 53 1.72e-05 GGCTGTCTCA GGAGGGAGGGGCAGGAGTGCGG GGTCTACACC chr19:2840806-2841306 - 24 1.72e-05 CCCTTGTCCG GACAGGAGGTGGATGCAAGCGG GCGGCCCGGG chr19:12156268-12156768 - 39 1.72e-05 GGGGTCCCGA GACGGGGGAGGGGCCGGGAGGA ACCGGCTCGA chr16:29807607-29808107 + 56 1.91e-05 GCTAGGCCGT GGGGAGGGAGGGACGCGACGGA GGTGGCCTGG chr17:1628463-1628963 - 32 1.91e-05 GGCGTAGGGA GAAAACGTGGGAACGAGGAGAG AGATGGAGCG chr5:138542777-138543277 - 26 1.91e-05 GGGCCTCTGG GGGATGGCGAGGAAGGGGGCCG CTCTGCCCCA chr16:679399-679899 - 56 2.12e-05 ACTGTTGGTA GAGTGGAAGGGGATAGAGATCG GTGGGGCGAG chr15:72117461-72117961 - 39 2.12e-05 AGCTTCCGTC GAAGAGGAGGGGGCTGCGGTGG CCACCGCGGC chr5:138338077-138338577 - 78 2.12e-05 A GGGAAGGAGGGAGGGACGGTTG AGGTGCCCGC chr12:51082887-51083387 - 44 2.12e-05 ACCGAGTCGG GAAGAGGCGTGGGAGCGAGGGG CACCGAGGAC chr5:43039465-43039965 - 48 2.12e-05 GGCACCCGTA GAAGAGGTGGGGCAGGCAGAGG AACCCGACAG chr17:3890147-3890647 - 58 2.12e-05 TGGTGTGGAG GATGAGGAGGGGCAGAGGATGA GGCCTGGAGA chr19:40420935-40421435 - 72 2.34e-05 TGCGCAT GGAGAGAGGCGCAGGGGGCTGG ACGGTGACCC chrX:73827442-73827942 + 46 2.34e-05 AGAGAAAGGA GAGGTAGACAGAACAAGAAAAG GACAAAAAGC chr14:66508039-66508539 - 65 2.34e-05 GCGGGTCCGC GGGAGGGGAAGGAGTCAGGGCG CGCGGCCCCA chr1:109911169-109911669 - 1 2.34e-05 CCTTGGTGGT GGCGGGTAGGGAGAGAGGCAGG chr22:39252508-39253008 + 1 2.59e-05 . ggaagcaagcggcatgggaagg atcatacccc chr6:24774864-24775364 + 66 2.59e-05 GGCAAGAGGC GGCAGGAAGTGGGTACGCAGGG GCGCAAGGCG chr10:102133038-10213353 + 62 2.59e-05 CCACAGGAAA GAGAGGAAGCGCCTGAGAGTCG ATGCCGGGTG chr6:108560281-108560781 + 26 2.59e-05 CTGGCCCGCG GGCGAAGAGGGGAGAGGGAGCT GCCCGCGCAG chr7:876855-877355 - 51 2.86e-05 CGGCCGAGGA GACAGAGGAAGGCCGAGGGGCG TGTGGGGACG chr19:49850610-49851110 - 1 3.16e-05 AAATACATCA GGGAAGAGGGGAGGACGGAATA chr17:7572766-7573266 + 26 3.48e-05 GGGAGGGTCC GACTTGGAGGGGCGAGGGGGAA GACCCACGGC chr15:72230636-72231136 + 22 3.83e-05 gGACCAGAAT GAGGGGGTAGGGCTGGGGCGGG AAAGGAGCCG chr12:6829005-6829505 + 19 3.83e-05 CCTCTTCCTA GGAATGAAGCGGAGGCGGTGGG GGCGAAACCG chr1:93179931-93180431 + 68 4.21e-05 AGGCAGAGCG GCCAGAAGGAGCACGGGGAAGG GCAGCCAGAT chr10:60778044-60778544 - 66 4.21e-05 AAAGGGCGGC TAGAGAAAAAGCAGGAGGGCGG GCGCCAACTG chr1:45521500-45522000 + 51 4.21e-05 GCGGGCCCCG GACAGGAGGAGGAAGAGGCAAC AGGCAAGAAG chr1:228109431-228109931 + 67 4.21e-05 CAGGGGTCCT GAGGGAGGACGCAGGGGGCTGA GGGAAGACGC chr19:36054848-36055348 - 13 4.21e-05 AGATTGGTGG GGCGGGGGGCGGGGAGGACTGG CCCCTCCGCG chr12:12723610-12724110 - 29 4.21e-05 TGGGTAGTGG GGCAAGGGGTGGCGGGCGACGG CGGCCGCAAC chr1:111990050-111990550 + 5 4.62e-05 gcgg ggggtgggGAGACGAGGCAGAG CCTAGTGCGT chr21:39313558-39314058 + 77 5.07e-05 CCGCAGCAGC GAGTGGGGGAGGGGAGGGCGCG TG chr1:151613115-151613615 - 23 5.07e-05 CATGAGTATA GAGCAGGAGTGAAGGCAGGAGG CCAGGGAAGG chr19:35154572-35155072 - 56 5.07e-05 CCCGTGGGCA GAGGGGCAGCGGATGGAGGTGG CGCACGAGAG chr10:104337869-10433836 - 67 5.07e-05 GATGGCTGCC GACAGAGGGGGCGCAGGAGGGT GTGGGGAGCG chr7:100428663-100429163 + 58 5.07e-05 TGCGATTGGG GGAAGGTAGAGGAGCCAGAGAA CGACTCAGCC chr17:48619836-48620336 - 41 5.55e-05 TGATCCAAGA GACGGCGGGAGGCAGGAGAAAG CGGAGCTCCG chr6:33248854-33249354 + 25 5.55e-05 ACCAGTAGCG GGAAGGGAAAGTGGAGGAGCAG AGGATTCCCG chr1:210236390-210236890 + 74 5.55e-05 TGTATAATTT GGAAAAGAAAGCAAGAACTGGG CCCTT chr7:100887005-100887505 - 63 5.55e-05 AAGGAAGGTT GGCAAGGGAGCCAGAAGGAAGG ATGGTGGCAA chr12:51025938-51026438 - 14 6.07e-05 GGGGCTGTGA GGGGAGGTGTGGCCAGGGAGGG CCTCAGGCCC chr15:69074239-69074739 - 3 6.64e-05 GGGAAGCCCA GGCAGGGCGAGGACTAGCGCGG TG chr12:28190336-28190836 + 79 6.64e-05 CGCAGCGGCG GCAGCGGAGAGCGAGAGAGGGG chr22:39311159-39311659 - 52 6.64e-05 CAGCTACTTG GGAGGCTGAGGCAGGAGAATGG CGTGAATCCA chr1:21345482-21345982 + 15 6.64e-05 GGGGAACCTG GAGGGCAGGAGCAGGCGGGAGT TGTTGCTTCG chr10:50623592-50624092 - 69 7.24e-05 GCAGGCGGCG GGCAGGTCGGGAGTGAGAAGGA CCGGCCTGGG chr15:40092208-40092708 - 75 7.24e-05 GCTG GGGAGGGAGAGCGGGCGGGCGC ACAAGGGTGT chr12:55829865-55830365 - 33 7.90e-05 GGGTTGCTGT GAAAGGAGGGGCAGTGCTGCGG GGCGAGGGAG chr1:86914554-86915054 + 73 7.90e-05 TTAGTCGGCT GAGGAGAAGCGGACACCAGCGG CGTTGG chr19:34365546-34366046 - 6 7.90e-05 AAGCTCATGT GGCCAGGAGCGGATGGAAAGGG ACAGC chr17:46771925-46772425 - 69 7.90e-05 TGCTGGCGGC GGCGAGGAGAGCATCCCGGAAG ACGCCGCGAG chr3:12484349-12484849 + 58 7.90e-05 AGTCCTCCAG GGCGAGAGAGGAAAGGGCCTAG GTACTGTGCT chr15:65286320-65286820 + 49 8.61e-05 GCAGGGGGCT GAGATGACAGGGGTGAGAACGT GCCGACAAGT chr10:3314447-3314947 + 57 8.61e-05 TGACTTCAAA GAGTGAGGGAAGAGGAGGGTGA CTTCACAGAG chr16:29804875-29805375 + 64 8.61e-05 ACGCGTGGAG GGCATAACGGGGAAACAGATGG AGTCCTTCCT chr10:72273917-72274417 - 12 9.37e-05 GCCGCTGTAA GACAAGAGGGGGACCGACCAGG CGTCAGTCTG chr2:190880713-190881213 - 51 9.37e-05 GCGGTGAGAT GACAGAAGAGGAAAGGGCAGCT ACTTGGGTGT chr20:50191688-50192188 + 70 9.37e-05 GCTCACGGCC GAGAACGAGCGGCTGCAGAAGA AGGTGGAGC chr17:7234355-7234855 - 7 9.37e-05 GGGATCACGT GACGGAGGGCGGCTGAGGAGCG CGGGGT chr14:23006636-23007136 + 54 9.37e-05 CGAGGGATGC GGAGAGCAGAGCGGCCGGAGGA GCGGCTAGGG chr6:6007277-6007777 - 6 9.37e-05 CTCAGCTGCT GGGTTGGAGAAAAAGAGGGTAG GCAAG chr3:128617799-128618299 + 65 1.02e-04 GGTTCCCTAG GGGAAGCAGGGGCTGCGGCAGA CGCCTCTCGG chr17:37358680-37359180 - 40 1.02e-04 CTGGGGCCAA GGGAGGGGCGGCGGCAGGCAGG GGGCCGCCTC chr1:146376878-146377378 - 7 1.11e-04 TATTTCTCCC GAGGCGGGGAGAAAGCGACATA TTACTA chr1:145287439-145287939 + 57 1.11e-04 CGGGCCCTGA GGATGCAAGGGACGGAGGAAGT TTCGTGCGTG chr6:39229145-39229645 + 32 1.11e-04 CCTGGACCGC GGATGCGTAAGGAGCGGGAAGA ACACAGGACT chr6:158644214-158644714 - 53 1.11e-04 CCGTTTCCCC GGCGCGGGGGGCGGGAAGGGGA TTGAGCTTCT chr9:137241104-137241604 - 14 1.11e-04 CGGCGGCGGG GAAGCAGGAGGAAGTAGACAAA CAGCAGCAGA chrX:134549166-134549666 + 10 1.41e-04 gaagggctg gggaggcggagagacagaccga gcgagcgaCA chr17:76736098-76736598 + 63 1.53e-04 gaccgagatc gagaacgagtgcgggaccgaga cTTCGAGCGG chr17:58218720-58219220 + 75 1.78e-04 TAGAGGCTGT GAGTGGATGGGGGTACGGATAG TGAA chr17:57987608-57988108 - 49 1.93e-04 GGGTGCGGGG GAGATAGCAGGCCGCGGGGTGA ACCCGGGGGC chr17:50866022-50866522 + 17 2.08e-04 TTAGTGGCTC GGGGTGGCGGGCACGGGGGTCA GACGAGCGCG chr12:64404505-64405005 + 75 2.24e-04 TGCAGGCTGG GAGGCGGGATGGAGTGATAGGG AAGG chr6:43053252-43053752 + 22 2.24e-04 CCAGGGGCGC GCGGTAAGGTGGGGGAGAGGGG ATTAGGCCCC chr17:45148440-45148940 + 65 2.41e-04 GACACCCGTG GAAGTGGGAGGAGGTGGCGCCG GGACTTTAAC chr17:81866932-81867432 - 66 2.59e-04 TAGGTGCCCA GGCAACGGGGGCCACGGAGGCG CCTAGAGCAC chr2:231786192-231786692 + 33 2.59e-04 GCGACGGGTC GGCGGAGACAGAAAAGCGCCGG ACGCCGGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVRRGGRGRGVARGRGRRRGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:155253478-155253978 1.1e-08 58_[+3]_20 chr20:31065649-31066149 1.1e-08 44_[+3]_34 chr7:27175133-27175633 1.8e-08 62_[-3]_16 chr21:32771737-32772237 2.8e-08 12_[+3]_66 chr1:155244583-155245083 2.8e-08 66_[+3]_12 chr17:36935723-36936223 3.4e-08 8_[-3]_70 chr1:40374357-40374857 3.4e-08 67_[+3]_11 chr17:7484243-7484743 4.2e-08 75_[-3]_3 chr5:159098627-159099127 4.2e-08 17_[+3]_61 chr10:101442018-10144251 6.3e-08 46_[-3]_32 chr22:41446803-41447303 1.6e-07 [-3]_78 chr22:20495983-20496483 1.6e-07 72_[-3]_6 chr10:41889520-41890020 1.6e-07 73_[+3]_5 chr11:102110208-10211070 2e-07 64_[+3]_14 chr16:25257954-25258454 2.3e-07 1_[+3]_77 chr21:39183016-39183516 2.3e-07 78_[-3] chr1:234608180-234608680 2.8e-07 3_[-3]_75 chr19:47608181-47608681 2.8e-07 16_[-3]_62 chr14:90396942-90397442 3.9e-07 54_[-3]_24 chr5:93582511-93583011 3.9e-07 22_[-3]_56 chr20:31075487-31075987 3.9e-07 4_[+3]_74 chrUn_GL000216v2:372-872 3.9e-07 52_[-3]_26 chr6:1388127-1388627 4.5e-07 57_[-3]_21 chr3:105366548-105367048 5.3e-07 75_[+3]_3 chr2:131682409-131682909 8.4e-07 22_[-3]_56 chr15:60374628-60375128 8.4e-07 25_[-3]_53 chr16:1308293-1308793 8.4e-07 57_[+3]_21 chr17:38730421-38730921 9.8e-07 49_[-3]_29 chr7:149126314-149126814 1.1e-06 24_[+3]_54 chr18:22169445-22169945 1.1e-06 67_[-3]_11 chr1:99850049-99850549 1.3e-06 72_[-3]_6 chr6:32971104-32971604 1.3e-06 8_[+3]_70 chrX:154398235-154398735 1.3e-06 32_[-3]_46 chr20:58650954-58651454 1.3e-06 52_[+3]_26 chr10:110209299-11020979 1.3e-06 53_[-3]_25 chr5:173327957-173328457 1.5e-06 73_[-3]_5 chr19:18438354-18438854 1.5e-06 49_[-3]_29 chr1:167935713-167936213 1.5e-06 54_[-3]_24 chr7:120951115-120951615 1.7e-06 71_[-3]_7 chr17:49495804-49496304 3.4e-06 38_[+3]_40 chr10:17230161-17230661 3.4e-06 [+3]_78 chr17:28725317-28725817 3.4e-06 48_[+3]_30 chr6:24720324-24720824 3.8e-06 36_[+3]_42 chr1:183471829-183472329 3.8e-06 38_[+3]_40 chr17:79810284-79810784 3.8e-06 2_[-3]_76 chr5:181187742-181188242 4.3e-06 18_[+3]_60 chr6:32154422-32154922 4.9e-06 15_[-3]_63 chr10:101694458-10169495 5.6e-06 73_[-3]_5 chr17:8015893-8016393 5.6e-06 75_[-3]_3 chr6:16759815-16760315 6.3e-06 53_[-3]_25 chr16:29805460-29805960 6.3e-06 59_[+3]_19 chr1:54052739-54053239 7.1e-06 11_[+3]_67 chr20:49278493-49278993 7.1e-06 77_[-3]_1 chr1:236065174-236065674 7.1e-06 1_[+3]_77 chr16:29811493-29811993 7.9e-06 21_[-3]_57 chr17:38702335-38702835 7.9e-06 24_[+3]_54 chr1:152109512-152110012 8.9e-06 19_[-3]_59 chr1:26921769-26922269 1.1e-05 [-3]_78 chr15:81888821-81889321 1.2e-05 54_[-3]_24 chr12:53390640-53391140 1.2e-05 59_[-3]_19 chr16:30698637-30699137 1.4e-05 56_[-3]_22 chr12:48105937-48106437 1.5e-05 6_[+3]_72 chr17:77555815-77556315 1.7e-05 56_[-3]_22 chr15:70097461-70097961 1.7e-05 41_[-3]_37 chr1:152111464-152111964 1.7e-05 5_[-3]_73 chr12:53097658-53098158 1.7e-05 52_[+3]_26 chr19:2840806-2841306 1.7e-05 23_[-3]_55 chr19:12156268-12156768 1.7e-05 38_[-3]_40 chr16:29807607-29808107 1.9e-05 55_[+3]_23 chr17:1628463-1628963 1.9e-05 31_[-3]_47 chr5:138542777-138543277 1.9e-05 25_[-3]_53 chr16:679399-679899 2.1e-05 55_[-3]_23 chr15:72117461-72117961 2.1e-05 38_[-3]_40 chr5:138338077-138338577 2.1e-05 77_[-3]_1 chr12:51082887-51083387 2.1e-05 43_[-3]_35 chr5:43039465-43039965 2.1e-05 47_[-3]_31 chr17:3890147-3890647 2.1e-05 57_[-3]_21 chr19:40420935-40421435 2.3e-05 71_[-3]_7 chrX:73827442-73827942 2.3e-05 45_[+3]_33 chr14:66508039-66508539 2.3e-05 64_[-3]_14 chr1:109911169-109911669 2.3e-05 [-3]_78 chr22:39252508-39253008 2.6e-05 [+3]_78 chr6:24774864-24775364 2.6e-05 65_[+3]_13 chr10:102133038-10213353 2.6e-05 61_[+3]_17 chr6:108560281-108560781 2.6e-05 25_[+3]_53 chr7:876855-877355 2.9e-05 50_[-3]_28 chr19:49850610-49851110 3.2e-05 [-3]_78 chr17:7572766-7573266 3.5e-05 25_[+3]_53 chr15:72230636-72231136 3.8e-05 21_[+3]_57 chr12:6829005-6829505 3.8e-05 18_[+3]_60 chr1:93179931-93180431 4.2e-05 67_[+3]_11 chr10:60778044-60778544 4.2e-05 65_[-3]_13 chr1:45521500-45522000 4.2e-05 50_[+3]_28 chr1:228109431-228109931 4.2e-05 66_[+3]_12 chr19:36054848-36055348 4.2e-05 12_[-3]_66 chr12:12723610-12724110 4.2e-05 28_[-3]_50 chr1:111990050-111990550 4.6e-05 4_[+3]_74 chr21:39313558-39314058 5.1e-05 76_[+3]_2 chr1:151613115-151613615 5.1e-05 22_[-3]_56 chr19:35154572-35155072 5.1e-05 55_[-3]_23 chr10:104337869-10433836 5.1e-05 66_[-3]_12 chr7:100428663-100429163 5.1e-05 57_[+3]_21 chr17:48619836-48620336 5.5e-05 40_[-3]_38 chr6:33248854-33249354 5.5e-05 24_[+3]_54 chr1:210236390-210236890 5.5e-05 73_[+3]_5 chr7:100887005-100887505 5.5e-05 62_[-3]_16 chr12:51025938-51026438 6.1e-05 13_[-3]_65 chr15:69074239-69074739 6.6e-05 2_[-3]_76 chr12:28190336-28190836 6.6e-05 78_[+3] chr22:39311159-39311659 6.6e-05 51_[-3]_27 chr1:21345482-21345982 6.6e-05 14_[+3]_64 chr10:50623592-50624092 7.2e-05 68_[-3]_10 chr15:40092208-40092708 7.2e-05 74_[-3]_4 chr12:55829865-55830365 7.9e-05 32_[-3]_46 chr1:86914554-86915054 7.9e-05 72_[+3]_6 chr19:34365546-34366046 7.9e-05 5_[-3]_73 chr17:46771925-46772425 7.9e-05 68_[-3]_10 chr3:12484349-12484849 7.9e-05 57_[+3]_21 chr15:65286320-65286820 8.6e-05 48_[+3]_30 chr10:3314447-3314947 8.6e-05 56_[+3]_22 chr16:29804875-29805375 8.6e-05 63_[+3]_15 chr10:72273917-72274417 9.4e-05 11_[-3]_67 chr2:190880713-190881213 9.4e-05 50_[-3]_28 chr20:50191688-50192188 9.4e-05 69_[+3]_9 chr17:7234355-7234855 9.4e-05 6_[-3]_72 chr14:23006636-23007136 9.4e-05 53_[+3]_25 chr6:6007277-6007777 9.4e-05 5_[-3]_73 chr3:128617799-128618299 0.0001 64_[+3]_14 chr17:37358680-37359180 0.0001 39_[-3]_39 chr1:146376878-146377378 0.00011 6_[-3]_72 chr1:145287439-145287939 0.00011 56_[+3]_22 chr6:39229145-39229645 0.00011 31_[+3]_47 chr6:158644214-158644714 0.00011 52_[-3]_26 chr9:137241104-137241604 0.00011 13_[-3]_65 chrX:134549166-134549666 0.00014 9_[+3]_69 chr17:76736098-76736598 0.00015 62_[+3]_16 chr17:58218720-58219220 0.00018 74_[+3]_4 chr17:57987608-57988108 0.00019 48_[-3]_30 chr17:50866022-50866522 0.00021 16_[+3]_62 chr12:64404505-64405005 0.00022 74_[+3]_4 chr6:43053252-43053752 0.00022 21_[+3]_57 chr17:45148440-45148940 0.00024 64_[+3]_14 chr17:81866932-81867432 0.00026 65_[-3]_13 chr2:231786192-231786692 0.00026 32_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVRRGGRGRGVARGRGRRRGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRVRRGGRGRGVARGRGRRRGG width=22 seqs=144 chr1:155253478-155253978 ( 59) GGAAGGGAAAGGAGGAGAGGAG 1 chr20:31065649-31066149 ( 45) GGAAAGGAAAGGAATGGAATGG 1 chr7:27175133-27175633 ( 63) GGGAGGGAGGGGAAGAGGGGAG 1 chr21:32771737-32772237 ( 13) GAGAGAGAGAGAGAGAGAGAGA 1 chr1:155244583-155245083 ( 67) GAGAGAGAGAGAGAGAGAGAGA 1 chr17:36935723-36936223 ( 9) GAAGAGGGAAGGAGGAGGGGGG 1 chr1:40374357-40374857 ( 68) GAGAGAGAGAGAGAGAGAATGA 1 chr17:7484243-7484743 ( 76) GAAAAAAAAAGAAGGGAAAAGG 1 chr5:159098627-159099127 ( 18) GAAAGAGAAAGAAAAAGGAAAA 1 chr10:101442018-10144251 ( 47) GACAGAGAGAGAGAGAGAGAGA 1 chr22:41446803-41447303 ( 1) GACAGGGAGGGGAAGACGGGGA 1 chr22:20495983-20496483 ( 73) GAGAGGGGGGGAGTAAGAGAGG 1 chr10:41889520-41890020 ( 74) GAAATGGAATGGAATGGAATGG 1 chr11:102110208-10211070 ( 65) GAAAAGAAAGGGAGGAAGGAAG 1 chr16:25257954-25258454 ( 2) GGGAAGGAGAGCACGGGAGCGG 1 chr21:39183016-39183516 ( 79) GAGGAGGAGGGGCGGAGGGAGA 1 chr1:234608180-234608680 ( 4) GGGACGGAGAGCAGAGGAAGGG 1 chr19:47608181-47608681 ( 17) GAAATGGAGGGGATGGAGGGGA 1 chr14:90396942-90397442 ( 55) GGGAGGAAGAGCAGAGGGAGCG 1 chr5:93582511-93583011 ( 23) GAGGGGGAAGGGATGACGAGGG 1 chr20:31075487-31075987 ( 5) GGAATGGAATGGAATGGAATGG 1 chrUn_GL000216v2:372-872 ( 53) GGAATGGAATGGAATGGAATGG 1 chr6:1388127-1388627 ( 58) GAGGAGGAGAGCAGGAGGCCGG 1 chr3:105366548-105367048 ( 76) GAAGTGGGGAGGAGACGGGAGG 1 chr2:131682409-131682909 ( 23) GGCAGGGAAGGAGCAGGGAGGG 1 chr15:60374628-60375128 ( 26) GGAAGGGAACGGGAGGGAACGG 1 chr16:1308293-1308793 ( 58) GGGAGGGAATGCGTGAGAGAGG 1 chr17:38730421-38730921 ( 50) GGAAAGGGAAGGACACGGGAGG 1 chr7:149126314-149126814 ( 25) GACGGGAGGGGAAACGGAGGGG 1 chr18:22169445-22169945 ( 68) GGGGTGGAGGGGAGGAAAGCGG 1 chr1:99850049-99850549 ( 73) GGGACGGGGAGAAACAGAAGGG 1 chr6:32971104-32971604 ( 9) GAGTGGGGAGGGATTAGAAAGG 1 chrX:154398235-154398735 ( 33) GAAAAAGAGAGAGTCGGAACGG 1 chr20:58650954-58651454 ( 53) GACAGGAAGAGGGCCAGGGGGG 1 chr10:110209299-11020979 ( 54) GGCGAGAAGAGAAAGAAAAGAA 1 chr5:173327957-173328457 ( 74) GAGGAAGAGGGGAGCACAAAGG 1 chr19:18438354-18438854 ( 50) GACATGGGGAGCCAGGGGATGG 1 chr1:167935713-167936213 ( 55) GGCAGGGAAAGCCGCGGGAAGG 1 chr7:120951115-120951615 ( 72) GGGAGGGAAGGGGAAGGCGAGA 1 chr17:49495804-49496304 ( 39) GGGGGGGAGGGGCGTCGGAGGG 1 chr10:17230161-17230661 ( 1) GGAGGGGAAGGCGGTGGAGGGA 1 chr17:28725317-28725817 ( 49) GGAAAGGAGGGAAGAGGAGGCT 1 chr6:24720324-24720824 ( 37) GGCGGAGGGGGAAGGGAAAGGA 1 chr1:183471829-183472329 ( 39) GGAGTGATAAGAAGGGGGAAGA 1 chr17:79810284-79810784 ( 3) GAGGAGGAAGGCCGCGGGAAGA 1 chr5:181187742-181188242 ( 19) GGAATGGAAAGCAAAAGCGTAG 1 chr6:32154422-32154922 ( 16) GGCAGGAAAGGCAACAGAAGCA 1 chr10:101694458-10169495 ( 74) GGAAGAAGGAGGAATGGAGGGT 1 chr17:8015893-8016393 ( 76) GAGAGGGAAGGACTTAGGCGGA 1 chr6:16759815-16760315 ( 54) GGCAGGGAAGGGGGCCGGACGG 1 chr16:29805460-29805960 ( 60) GGAGGGAGGGGGAGTGGAATCG 1 chr1:54052739-54053239 ( 12) GAAATGGGCTGCAAGGGAAGGG 1 chr20:49278493-49278993 ( 78) GAAGGGAAGGGAGGACCAGAGG 1 chr1:236065174-236065674 ( 2) GGGAGGGGGAGCAGAGCGCGGG 1 chr16:29811493-29811993 ( 22) GACGGAGCGGGGACAGGAAAGG 1 chr17:38702335-38702835 ( 25) GGCGGAGAGGGCACGAGCAGGG 1 chr1:152109512-152110012 ( 20) GAGAGGAACCGGAGAAGAGAAG 1 chr1:26921769-26922269 ( 1) GAGAAGGGCGGAAGGAGCGTGG 1 chr15:81888821-81889321 ( 55) GAGAGGAAGAGCATGAGTGATA 1 chr12:53390640-53391140 ( 60) GAAACAAAGGGAAAGGGAGATA 1 chr16:30698637-30699137 ( 57) GAAAGGCTGAGAGAAGGGAGGG 1 chr12:48105937-48106437 ( 7) GAAGAGGAGGGGGCTGGGGCAG 1 chr17:77555815-77556315 ( 57) GGAAAGGGGTGGAGGGCAAGTG 1 chr15:70097461-70097961 ( 42) GGGAAGGAAGGAAGCCGTAGAG 1 chr1:152111464-152111964 ( 6) GGGAGCAAGAGGAGAGGCGCGA 1 chr12:53097658-53098158 ( 53) GGAGGGAGGGGCAGGAGTGCGG 1 chr19:2840806-2841306 ( 24) GACAGGAGGTGGATGCAAGCGG 1 chr19:12156268-12156768 ( 39) GACGGGGGAGGGGCCGGGAGGA 1 chr16:29807607-29808107 ( 56) GGGGAGGGAGGGACGCGACGGA 1 chr17:1628463-1628963 ( 32) GAAAACGTGGGAACGAGGAGAG 1 chr5:138542777-138543277 ( 26) GGGATGGCGAGGAAGGGGGCCG 1 chr16:679399-679899 ( 56) GAGTGGAAGGGGATAGAGATCG 1 chr15:72117461-72117961 ( 39) GAAGAGGAGGGGGCTGCGGTGG 1 chr5:138338077-138338577 ( 78) GGGAAGGAGGGAGGGACGGTTG 1 chr12:51082887-51083387 ( 44) GAAGAGGCGTGGGAGCGAGGGG 1 chr5:43039465-43039965 ( 48) GAAGAGGTGGGGCAGGCAGAGG 1 chr17:3890147-3890647 ( 58) GATGAGGAGGGGCAGAGGATGA 1 chr19:40420935-40421435 ( 72) GGAGAGAGGCGCAGGGGGCTGG 1 chrX:73827442-73827942 ( 46) GAGGTAGACAGAACAAGAAAAG 1 chr14:66508039-66508539 ( 65) GGGAGGGGAAGGAGTCAGGGCG 1 chr1:109911169-109911669 ( 1) GGCGGGTAGGGAGAGAGGCAGG 1 chr22:39252508-39253008 ( 1) GGAAGCAAGCGGCATGGGAAGG 1 chr6:24774864-24775364 ( 66) GGCAGGAAGTGGGTACGCAGGG 1 chr10:102133038-10213353 ( 62) GAGAGGAAGCGCCTGAGAGTCG 1 chr6:108560281-108560781 ( 26) GGCGAAGAGGGGAGAGGGAGCT 1 chr7:876855-877355 ( 51) GACAGAGGAAGGCCGAGGGGCG 1 chr19:49850610-49851110 ( 1) GGGAAGAGGGGAGGACGGAATA 1 chr17:7572766-7573266 ( 26) GACTTGGAGGGGCGAGGGGGAA 1 chr15:72230636-72231136 ( 22) GAGGGGGTAGGGCTGGGGCGGG 1 chr12:6829005-6829505 ( 19) GGAATGAAGCGGAGGCGGTGGG 1 chr1:93179931-93180431 ( 68) GCCAGAAGGAGCACGGGGAAGG 1 chr10:60778044-60778544 ( 66) TAGAGAAAAAGCAGGAGGGCGG 1 chr1:45521500-45522000 ( 51) GACAGGAGGAGGAAGAGGCAAC 1 chr1:228109431-228109931 ( 67) GAGGGAGGACGCAGGGGGCTGA 1 chr19:36054848-36055348 ( 13) GGCGGGGGGCGGGGAGGACTGG 1 chr12:12723610-12724110 ( 29) GGCAAGGGGTGGCGGGCGACGG 1 chr1:111990050-111990550 ( 5) GGGGTGGGGAGACGAGGCAGAG 1 chr21:39313558-39314058 ( 77) GAGTGGGGGAGGGGAGGGCGCG 1 chr1:151613115-151613615 ( 23) GAGCAGGAGTGAAGGCAGGAGG 1 chr19:35154572-35155072 ( 56) GAGGGGCAGCGGATGGAGGTGG 1 chr10:104337869-10433836 ( 67) GACAGAGGGGGCGCAGGAGGGT 1 chr7:100428663-100429163 ( 58) GGAAGGTAGAGGAGCCAGAGAA 1 chr17:48619836-48620336 ( 41) GACGGCGGGAGGCAGGAGAAAG 1 chr6:33248854-33249354 ( 25) GGAAGGGAAAGTGGAGGAGCAG 1 chr1:210236390-210236890 ( 74) GGAAAAGAAAGCAAGAACTGGG 1 chr7:100887005-100887505 ( 63) GGCAAGGGAGCCAGAAGGAAGG 1 chr12:51025938-51026438 ( 14) GGGGAGGTGTGGCCAGGGAGGG 1 chr15:69074239-69074739 ( 3) GGCAGGGCGAGGACTAGCGCGG 1 chr12:28190336-28190836 ( 79) GCAGCGGAGAGCGAGAGAGGGG 1 chr22:39311159-39311659 ( 52) GGAGGCTGAGGCAGGAGAATGG 1 chr1:21345482-21345982 ( 15) GAGGGCAGGAGCAGGCGGGAGT 1 chr10:50623592-50624092 ( 69) GGCAGGTCGGGAGTGAGAAGGA 1 chr15:40092208-40092708 ( 75) GGGAGGGAGAGCGGGCGGGCGC 1 chr12:55829865-55830365 ( 33) GAAAGGAGGGGCAGTGCTGCGG 1 chr1:86914554-86915054 ( 73) GAGGAGAAGCGGACACCAGCGG 1 chr19:34365546-34366046 ( 6) GGCCAGGAGCGGATGGAAAGGG 1 chr17:46771925-46772425 ( 69) GGCGAGGAGAGCATCCCGGAAG 1 chr3:12484349-12484849 ( 58) GGCGAGAGAGGAAAGGGCCTAG 1 chr15:65286320-65286820 ( 49) GAGATGACAGGGGTGAGAACGT 1 chr10:3314447-3314947 ( 57) GAGTGAGGGAAGAGGAGGGTGA 1 chr16:29804875-29805375 ( 64) GGCATAACGGGGAAACAGATGG 1 chr10:72273917-72274417 ( 12) GACAAGAGGGGGACCGACCAGG 1 chr2:190880713-190881213 ( 51) GACAGAAGAGGAAAGGGCAGCT 1 chr20:50191688-50192188 ( 70) GAGAACGAGCGGCTGCAGAAGA 1 chr17:7234355-7234855 ( 7) GACGGAGGGCGGCTGAGGAGCG 1 chr14:23006636-23007136 ( 54) GGAGAGCAGAGCGGCCGGAGGA 1 chr6:6007277-6007777 ( 6) GGGTTGGAGAAAAAGAGGGTAG 1 chr3:128617799-128618299 ( 65) GGGAAGCAGGGGCTGCGGCAGA 1 chr17:37358680-37359180 ( 40) GGGAGGGGCGGCGGCAGGCAGG 1 chr1:146376878-146377378 ( 7) GAGGCGGGGAGAAAGCGACATA 1 chr1:145287439-145287939 ( 57) GGATGCAAGGGACGGAGGAAGT 1 chr6:39229145-39229645 ( 32) GGATGCGTAAGGAGCGGGAAGA 1 chr6:158644214-158644714 ( 53) GGCGCGGGGGGCGGGAAGGGGA 1 chr9:137241104-137241604 ( 14) GAAGCAGGAGGAAGTAGACAAA 1 chrX:134549166-134549666 ( 10) GGGAGGCGGAGAGACAGACCGA 1 chr17:76736098-76736598 ( 63) GAGAACGAGTGCGGGACCGAGA 1 chr17:58218720-58219220 ( 75) GAGTGGATGGGGGTACGGATAG 1 chr17:57987608-57988108 ( 49) GAGATAGCAGGCCGCGGGGTGA 1 chr17:50866022-50866522 ( 17) GGGGTGGCGGGCACGGGGGTCA 1 chr12:64404505-64405005 ( 75) GAGGCGGGATGGAGTGATAGGG 1 chr6:43053252-43053752 ( 22) GCGGTAAGGTGGGGGAGAGGGG 1 chr17:45148440-45148940 ( 65) GAAGTGGGAGGAGGTGGCGCCG 1 chr17:81866932-81867432 ( 66) GGCAACGGGGGCCACGGAGGCG 1 chr2:231786192-231786692 ( 33) GGCGGAGACAGAAAAGCGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVRRGGRGRGVARGRGRRRGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 9.20582 E= 3.6e-055 -1381 -1381 170 -480 133 -388 69 -1381 69 -18 42 -480 152 -446 26 -163 59 -246 71 -34 6 -200 124 -1381 45 -314 114 -280 147 -229 18 -180 66 -288 109 -1381 93 -176 51 -89 -380 -546 168 -1381 45 -25 62 -480 156 -94 -18 -1381 56 -114 47 -34 24 -114 71 -55 98 -82 54 -1381 -48 -156 130 -1381 95 -166 69 -248 113 -122 49 -380 63 -100 26 -10 -34 -146 118 -222 49 -446 111 -180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVRRGGRGRGVARGRGRRRGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 144 E= 3.6e-055 0.000000 0.000000 0.993056 0.006944 0.486111 0.020833 0.493056 0.000000 0.312500 0.270833 0.409722 0.006944 0.555556 0.013889 0.368056 0.062500 0.291667 0.055556 0.500000 0.152778 0.201389 0.076389 0.722222 0.000000 0.263889 0.034722 0.673611 0.027778 0.534722 0.062500 0.347222 0.055556 0.305556 0.041667 0.652778 0.000000 0.368056 0.090278 0.437500 0.104167 0.013889 0.006944 0.979167 0.000000 0.263889 0.256944 0.472222 0.006944 0.569444 0.159722 0.270833 0.000000 0.284722 0.138889 0.423611 0.152778 0.229167 0.138889 0.500000 0.131944 0.381944 0.173611 0.444444 0.000000 0.138889 0.104167 0.756944 0.000000 0.375000 0.097222 0.493056 0.034722 0.423611 0.131944 0.430556 0.013889 0.298611 0.152778 0.368056 0.180556 0.152778 0.111111 0.694444 0.041667 0.270833 0.013889 0.659722 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRVRRGGRGRGVARGRGRRRGG MEME-3 regular expression -------------------------------------------------------------------------------- G[GA][GAC][AG][GA][GA][GA][AG][GA][GA]G[GAC][AG][GA][GA][GA]G[GA][GA][GA]G[GA] -------------------------------------------------------------------------------- Time 1127.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 width = 43 sites = 6 llr = 285 E-value = 3.3e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::8::::::82:::a:::::2:2a2:2:2::::7:2:287:2: pos.-specific C aa2::a::2::::a:::::5:7:::a:7::8:a27::82:88: probability G :::aa::a828:a::a:aa:8:8:::::8a2:::::a::32:: matrix T ::::::a::::a::::a::5:3::8:83:::a:238::::::a bits 2.4 * * * * * * * 2.1 * * * * * * * 1.9 * * * * * * * 1.7 ******** * ******** **** * ** ** * * Relative 1.4 ******** * ******** **** * ** ** * * Entropy 1.2 ******** ********** * ***** ** ** ***** ** (68.6 bits) 0.9 ******************************************* 0.7 ******************************************* 0.5 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel CCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCT consensus T T T T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr19:13747278-13747778 + 34 5.59e-24 ctgttgttgc ccaggctggagtgcagtggcgcgatctcggctctttgcaacct ctgcctcccg chr16:75565172-75565672 + 50 8.96e-24 gctctgttgc ccaggctggagtgcagtggtgtgatctcggctcactgccacct ccacctcc chr6:89353076-89353576 + 47 2.96e-22 gctctgtcgc ccaggctgggatgcagtggcgcgatcttggctcactgcagcct ctacctcccg chr10:96580053-96580553 + 54 5.01e-22 gctctgtcgc ccaggctgcagtgcagtggtgcaatctcggctcactgaaagct ccgc chr17:19063364-19063864 - 5 2.56e-21 TGTCTGCCGC CCCGGCTGGAGTGCAGTGGCGCGATCTCGGCTCCTAGCAACAT CTGC chr10:70148468-70148968 - 56 6.77e-21 GC CCAGGCTGGAGTGCAGTGGTATGAACATAGGTCACTGCAGCCT TGACCTCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:13747278-13747778 5.6e-24 33_[+4]_24 chr16:75565172-75565672 9e-24 49_[+4]_8 chr6:89353076-89353576 3e-22 46_[+4]_11 chr10:96580053-96580553 5e-22 53_[+4]_4 chr17:19063364-19063864 2.6e-21 4_[-4]_53 chr10:70148468-70148968 6.8e-21 55_[-4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT width=43 seqs=6 chr19:13747278-13747778 ( 34) CCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCTTTGCAACCT 1 chr16:75565172-75565672 ( 50) CCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCCACCT 1 chr6:89353076-89353576 ( 47) CCAGGCTGGGATGCAGTGGCGCGATCTTGGCTCACTGCAGCCT 1 chr10:96580053-96580553 ( 54) CCAGGCTGCAGTGCAGTGGTGCAATCTCGGCTCACTGAAAGCT 1 chr17:19063364-19063864 ( 5) CCCGGCTGGAGTGCAGTGGCGCGATCTCGGCTCCTAGCAACAT 1 chr10:70148468-70148968 ( 56) CCAGGCTGGAGTGCAGTGGTATGAACATAGGTCACTGCAGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34742 bayes= 12.1581 E= 3.3e-030 -923 170 -923 -923 -923 170 -923 -923 210 -88 -923 -923 -923 -923 170 -923 -923 -923 170 -923 -923 170 -923 -923 -923 -923 -923 237 -923 -923 170 -923 -923 -88 144 -923 210 -923 -88 -923 -21 -923 144 -923 -923 -923 -923 237 -923 -923 170 -923 -923 170 -923 -923 237 -923 -923 -923 -923 -923 170 -923 -923 -923 -923 237 -923 -923 170 -923 -923 -923 170 -923 -923 71 -923 137 -21 -923 144 -923 -923 112 -923 78 -21 -923 144 -923 237 -923 -923 -923 -21 -923 -923 210 -923 170 -923 -923 -21 -923 -923 210 -923 112 -923 78 -21 -923 144 -923 -923 -923 170 -923 -923 144 -88 -923 -923 -923 -923 237 -923 170 -923 -923 178 -88 -923 -21 -923 112 -923 78 -21 -923 -923 210 -923 -923 170 -923 -21 144 -923 -923 210 -88 -923 -923 178 -923 12 -923 -923 144 -88 -923 -21 144 -923 -923 -923 -923 -923 237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 6 E= 3.3e-030 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.833333 0.000000 0.166667 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.166667 0.000000 0.833333 0.000000 0.000000 0.666667 0.000000 0.333333 0.166667 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.000000 0.666667 0.000000 0.333333 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.166667 0.000000 0.166667 0.000000 0.666667 0.000000 0.333333 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.833333 0.166667 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGCTGGAGTGCAGTGGYGYGATCTYGGCTCAYTGCARCCT MEME-4 regular expression -------------------------------------------------------------------------------- CCAGGCTGGAGTGCAGTGG[CT]G[CT]GATCT[CT]GGCTCA[CT]TGCA[AG]CCT -------------------------------------------------------------------------------- Time 1433.62 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKKGTWCTTTKATATTWTAT MEME-5 width = 22 sites = 11 llr = 217 E-value = 3.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKKGTWCTTTKATATTWTAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::111:52:1::7:71:3391 pos.-specific C ::311::261::2:2::::11: probability G :::557::::235:2::32::1 matrix T aa7342a3297743639756:8 bits 2.4 ** * 2.1 ** * 1.9 ** * * * * 1.7 ** * * * * Relative 1.4 *** * * * * *** ** Entropy 1.2 *** * *** * *** *** (28.5 bits) 0.9 *** * *** * *** *** 0.7 *** ******* ********* 0.5 *** ***************** 0.2 ********************** 0.0 ---------------------- Multilevel TTTGGGTACTTTGATATTTTAT consensus CTT T GTT T GAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKKGTWCTTTKATATTWTAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrUn_KI270467v1:3170-36 + 11 6.13e-15 caatatatat tttgggtactttgatattttat ggacagtata chr4:49709163-49709663 - 77 6.13e-15 AC TTTGGGTACTTTGATATTTTAT GTACAGTATA chrUn_KI270466v1:187-687 + 7 4.06e-12 atatat tttgggtcctttgatattgtat gtacagtaca chrUn_KI270467v1:2961-34 + 11 6.11e-12 taatatatat tttgagtatttggatattttat gtacagtata chrUn_KI270467v1:2001-25 + 54 2.66e-10 taatatatct ttcatgtaccttcatattttat gtacagtata chr5:59303226-59303726 + 10 1.06e-09 gcatttgct tttgggttcttggtcatgaaat ccttgcctaa chr1:28648514-28649014 + 18 1.83e-09 CCCGGCGCCC TTTCTTTACTGTTATATGTTAG GCGAAATATT chr5:159098627-159099127 - 53 2.63e-09 TCTTTCTTTT TTCTTTTTCTTTCTTTTTTTCT TTCCTCCTTT chr6:27602124-27602624 + 78 7.19e-09 tcccagctaa ttcttgtatttttagtagaaat g chr1:183025789-183026289 + 40 2.38e-08 ATATGTTAAC TTTGGGTCATGGTTGATTAAAA GGTCAAAAGA chr20:31065649-31066149 - 3 6.20e-08 ATTCCACTCA TTTTCATTATATTACTTTGCAT TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKKGTWCTTTKATATTWTAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:3170-36 6.1e-15 10_[+5]_68 chr4:49709163-49709663 6.1e-15 76_[-5]_2 chrUn_KI270466v1:187-687 4.1e-12 6_[+5]_72 chrUn_KI270467v1:2961-34 6.1e-12 10_[+5]_68 chrUn_KI270467v1:2001-25 2.7e-10 53_[+5]_25 chr5:59303226-59303726 1.1e-09 9_[+5]_69 chr1:28648514-28649014 1.8e-09 17_[+5]_61 chr5:159098627-159099127 2.6e-09 52_[-5]_26 chr6:27602124-27602624 7.2e-09 77_[+5]_1 chr1:183025789-183026289 2.4e-08 39_[+5]_39 chr20:31065649-31066149 6.2e-08 2_[-5]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKKGTWCTTTKATATTWTAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKKGTWCTTTKATATTWTAT width=22 seqs=11 chrUn_KI270467v1:3170-36 ( 11) TTTGGGTACTTTGATATTTTAT 1 chr4:49709163-49709663 ( 77) TTTGGGTACTTTGATATTTTAT 1 chrUn_KI270466v1:187-687 ( 7) TTTGGGTCCTTTGATATTGTAT 1 chrUn_KI270467v1:2961-34 ( 11) TTTGAGTATTTGGATATTTTAT 1 chrUn_KI270467v1:2001-25 ( 54) TTCATGTACCTTCATATTTTAT 1 chr5:59303226-59303726 ( 10) TTTGGGTTCTTGGTCATGAAAT 1 chr1:28648514-28649014 ( 18) TTTCTTTACTGTTATATGTTAG 1 chr5:159098627-159099127 ( 53) TTCTTTTTCTTTCTTTTTTTCT 1 chr6:27602124-27602624 ( 78) TTCTTGTATTTTTAGTAGAAAT 1 chr1:183025789-183026289 ( 40) TTTGGGTCATGGTTGATTAAAA 1 chr20:31065649-31066149 ( 3) TTTTCATTATATTACTTTGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKKGTWCTTTKATATTWTAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47321 bayes= 13.0971 E= 3.5e-010 -1010 -1010 -1010 237 -1010 -1010 -1010 237 -1010 -17 -1010 191 -109 -175 83 49 -109 -175 57 91 -109 -1010 125 -9 -1010 -1010 -1010 237 149 -75 -1010 49 -9 105 -1010 -9 -1010 -175 -1010 223 -109 -1010 -75 191 -1010 -1010 -17 191 -1010 -75 57 91 191 -1010 -1010 49 -1010 -75 -75 172 191 -1010 -1010 49 -109 -1010 -1010 223 -1010 -1010 -17 191 49 -1010 -75 149 49 -175 -1010 172 223 -175 -1010 -1010 -109 -1010 -175 208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKKGTWCTTTKATATTWTAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 11 E= 3.5e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.727273 0.090909 0.090909 0.545455 0.272727 0.090909 0.090909 0.454545 0.363636 0.090909 0.000000 0.727273 0.181818 0.000000 0.000000 0.000000 1.000000 0.545455 0.181818 0.000000 0.272727 0.181818 0.636364 0.000000 0.181818 0.000000 0.090909 0.000000 0.909091 0.090909 0.000000 0.181818 0.727273 0.000000 0.000000 0.272727 0.727273 0.000000 0.181818 0.454545 0.363636 0.727273 0.000000 0.000000 0.272727 0.000000 0.181818 0.181818 0.636364 0.727273 0.000000 0.000000 0.272727 0.090909 0.000000 0.000000 0.909091 0.000000 0.000000 0.272727 0.727273 0.272727 0.000000 0.181818 0.545455 0.272727 0.090909 0.000000 0.636364 0.909091 0.090909 0.000000 0.000000 0.090909 0.000000 0.090909 0.818182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKKGTWCTTTKATATTWTAT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TC][GT][GT]GT[AT]CTT[TG][GT][AT]T[AT]T[TG][TA][TA]AT -------------------------------------------------------------------------------- Time 1739.11 secs. ******************************************************************************** ******************************************************************************** MOTIF AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 width = 40 sites = 9 llr = 261 E-value = 2.9e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 Description -------------------------------------------------------------------------------- Simplified A 8:191:92191:71:9:141:91:9::82:81:9::8:19 pos.-specific C :67:48:37::8:69:48464:68:78238:7a:36:241 probability G :1:131:21:2111:12::3:12:::1:1:1::::1:::: matrix T 232:11121171221:311:6:12131:3212:173284: bits 2.4 2.1 1.9 * * * * * * * * 1.7 * * * * * * * ** * * Relative 1.4 * * * * * * * * * ** ** * Entropy 1.2 * * * * * ** ** ** * ** *** ** * (41.8 bits) 0.9 * * * ** * ** * ** *** * ** *** ** * 0.7 * ** ** **** ** ** ** ***** ****** **** 0.5 **** ** ***** ******** ***** *********** 0.2 **** ** ******************************** 0.0 ---------------------------------------- Multilevel ACCACCACCATCACCACCACTACCACCACCACCATCATCA consensus TTT G A G TT T CGC GT T CTT T CTTCT sequence G G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------------------- chr17:81253580-81254080 + 60 5.07e-21 caccgctatc atcaccaccatctccatccctaccaccatcaccatcatca t chr16:89069109-89069609 - 3 7.78e-21 CATCACCATC ATCACCACCATCATCATCACCACCATCACCACCATCATCA TC chr19:35105596-35106096 + 41 2.64e-20 ccatcacatc accaacaacatcaccagccctaccaccatcatcatcatta ctatcaccac chr17:29293691-29294191 - 59 3.70e-16 TC AGCAGCAGCAGCAGCAGCCGCACCACCACCACCATTATTA TTTCTACAAC chr16:8590688-8591188 + 60 3.70e-16 caccaccatc accagcagcagcatcaccaacagcaccaccatcaccatca t chr1:10853336-10853836 + 60 4.06e-15 taccatcact actgccatcattaccatcactactaccattgccatcacta t chr16:1706265-1706765 - 26 4.17e-11 GTCTAGGTTC TCCAGCACGTTCACCACCAGCGGCATGAGCTCCTTGACCA CCTCCTCGTC chr12:1223028-1223528 - 4 4.44e-10 CTATTAGATC ACAACTATTATGGATGCTCCTAACTCCCATACCACTTTAA CTG chr10:15796169-15796669 - 9 7.52e-10 GTTTTAAGTA TTTATGTAAAACTCCACATGTATTATTCACAACACTTTTC TGTGGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:81253580-81254080 5.1e-21 59_[+6]_1 chr16:89069109-89069609 7.8e-21 2_[-6]_58 chr19:35105596-35106096 2.6e-20 40_[+6]_20 chr17:29293691-29294191 3.7e-16 58_[-6]_2 chr16:8590688-8591188 3.7e-16 59_[+6]_1 chr1:10853336-10853836 4.1e-15 59_[+6]_1 chr16:1706265-1706765 4.2e-11 25_[-6]_35 chr12:1223028-1223528 4.4e-10 3_[-6]_57 chr10:15796169-15796669 7.5e-10 8_[-6]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA width=40 seqs=9 chr17:81253580-81254080 ( 60) ATCACCACCATCTCCATCCCTACCACCATCACCATCATCA 1 chr16:89069109-89069609 ( 3) ATCACCACCATCATCATCACCACCATCACCACCATCATCA 1 chr19:35105596-35106096 ( 41) ACCAACAACATCACCAGCCCTACCACCATCATCATCATTA 1 chr17:29293691-29294191 ( 59) AGCAGCAGCAGCAGCAGCCGCACCACCACCACCATTATTA 1 chr16:8590688-8591188 ( 60) ACCAGCAGCAGCATCACCAACAGCACCACCATCACCATCA 1 chr1:10853336-10853836 ( 60) ACTGCCATCATTACCATCACTACTACCATTGCCATCACTA 1 chr16:1706265-1706765 ( 26) TCCAGCACGTTCACCACCAGCGGCATGAGCTCCTTGACCA 1 chr12:1223028-1223528 ( 4) ACAACTATTATGGATGCTCCTAACTCCCATACCACTTTAA 1 chr10:15796169-15796669 ( 9) TTTATGTAAAACTCCACATGTATTATTCACAACACTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 40 n= 36539 bayes= 12.1212 E= 2.9e-013 201 -982 -982 20 -982 86 -146 78 -80 112 -982 20 220 -982 -146 -982 -80 54 12 -80 -982 134 -146 -80 220 -982 -982 -80 20 12 -46 20 -80 112 -146 -80 220 -982 -982 -80 -80 -982 -46 178 -982 134 -146 -80 178 -982 -146 20 -80 86 -146 20 -982 154 -982 -80 220 -982 -146 -982 -982 54 -46 78 -80 134 -982 -80 120 54 -982 -80 -80 86 12 -982 -982 54 -982 152 220 -982 -146 -982 -80 86 -46 -80 -982 134 -982 20 220 -982 -982 -80 -982 112 -982 78 -982 134 -146 -80 201 -46 -982 -982 20 12 -146 78 -982 134 -982 20 201 -982 -146 -80 -80 112 -982 20 -982 170 -982 -982 220 -982 -982 -80 -982 12 -982 178 -982 86 -146 78 201 -982 -982 20 -982 -46 -982 201 -80 54 -982 120 220 -146 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 40 nsites= 9 E= 2.9e-013 0.777778 0.000000 0.000000 0.222222 0.000000 0.555556 0.111111 0.333333 0.111111 0.666667 0.000000 0.222222 0.888889 0.000000 0.111111 0.000000 0.111111 0.444444 0.333333 0.111111 0.000000 0.777778 0.111111 0.111111 0.888889 0.000000 0.000000 0.111111 0.222222 0.333333 0.222222 0.222222 0.111111 0.666667 0.111111 0.111111 0.888889 0.000000 0.000000 0.111111 0.111111 0.000000 0.222222 0.666667 0.000000 0.777778 0.111111 0.111111 0.666667 0.000000 0.111111 0.222222 0.111111 0.555556 0.111111 0.222222 0.000000 0.888889 0.000000 0.111111 0.888889 0.000000 0.111111 0.000000 0.000000 0.444444 0.222222 0.333333 0.111111 0.777778 0.000000 0.111111 0.444444 0.444444 0.000000 0.111111 0.111111 0.555556 0.333333 0.000000 0.000000 0.444444 0.000000 0.555556 0.888889 0.000000 0.111111 0.000000 0.111111 0.555556 0.222222 0.111111 0.000000 0.777778 0.000000 0.222222 0.888889 0.000000 0.000000 0.111111 0.000000 0.666667 0.000000 0.333333 0.000000 0.777778 0.111111 0.111111 0.777778 0.222222 0.000000 0.000000 0.222222 0.333333 0.111111 0.333333 0.000000 0.777778 0.000000 0.222222 0.777778 0.000000 0.111111 0.111111 0.111111 0.666667 0.000000 0.222222 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.333333 0.000000 0.666667 0.000000 0.555556 0.111111 0.333333 0.777778 0.000000 0.000000 0.222222 0.000000 0.222222 0.000000 0.777778 0.111111 0.444444 0.000000 0.444444 0.888889 0.111111 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AYCASCANCATCACCABCMSYACCAYCAHCACCAYYATYA MEME-6 regular expression -------------------------------------------------------------------------------- [AT][CT][CT]A[CG]CA[CAGT]CA[TG]C[AT][CT]CA[CTG]C[AC][CG][TC]A[CG][CT]A[CT]C[AC][CTA][CT]A[CT]CA[TC][CT][AT][TC][CT]A -------------------------------------------------------------------------------- Time 2042.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 width = 49 sites = 4 llr = 210 E-value = 1.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 Description -------------------------------------------------------------------------------- Simplified A :::a3:::3::::::a::a:3::::::::::::::::::::::::::5: pos.-specific C ::8:3::::a:8:::::3::3a35:3a::8:::::::838:3:aa3a:: probability G :a3:5a:a8:a:aaa:38::5:85a::::3:38:3a3:8:a5a::8:5: matrix T a:::::a::::3::::8::a:::::8:aa:a83a8:83:3:3::::::a bits 2.4 * * * * ** ** * * * 2.1 * * * * ** ** * * * 1.9 * * * * ** ** * * * 1.7 ** * *** ** **** ** * * *** * * * * *** * * Relative 1.4 ** * *** ** ***** ** * ***** ** **** * *** * * Entropy 1.2 ** * *** ** ***** ** * ***** ** **** * *** * * (75.6 bits) 0.9 **** *************** ** ***************** ******* 0.7 **** *************** ******************** ******* 0.5 ************************************************* 0.2 ************************************************* 0.0 ------------------------------------------------- Multilevel TGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCAT consensus G A A T GC A CG C G GT G GTCT C C G sequence C C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------- chr6:27837873-27838373 + 13 8.24e-28 GATGGCCAGC TGCAAGTGGCGCGGGATGATGCGGGTCTTCTTGTTGTCGCGGGCCGCGT TGCCAGCCAG chr1:228457343-228457843 + 21 2.62e-27 GATGGCCAGC TGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGCGCCGCGT TGCCGGCAAG chr6:27147122-27147622 - 12 1.73e-26 GATGGCCAGT TGGAGGTGACGCGGGATGATACGGGTCTTCTTGTTGTCGCGGGCCGCAT TGCCAGCCAG chr16:681706-682206 + 13 9.57e-21 TCTGTGTGTG TGCACGTGGCGTGGGAGCATCCCCGCCTTGTGTTGGGTCTGTGCCCCAT GGAGGAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27837873-27838373 8.2e-28 12_[+7]_39 chr1:228457343-228457843 2.6e-27 20_[+7]_31 chr6:27147122-27147622 1.7e-26 11_[-7]_40 chr16:681706-682206 9.6e-21 12_[+7]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT width=49 seqs=4 chr6:27837873-27838373 ( 13) TGCAAGTGGCGCGGGATGATGCGGGTCTTCTTGTTGTCGCGGGCCGCGT 1 chr1:228457343-228457843 ( 21) TGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGCGCCGCGT 1 chr6:27147122-27147622 ( 12) TGGAGGTGACGCGGGATGATACGGGTCTTCTTGTTGTCGCGGGCCGCAT 1 chr16:681706-682206 ( 13) TGCACGTGGCGTGGGAGCATCCCCGCCTTGTGTTGGGTCTGTGCCCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 31148 bayes= 12.0785 E= 1.9e-008 -865 -865 -865 237 -865 -865 170 -865 -865 129 -29 -865 237 -865 -865 -865 37 -29 70 -865 -865 -865 170 -865 -865 -865 -865 237 -865 -865 170 -865 37 -865 129 -865 -865 170 -865 -865 -865 -865 170 -865 -865 129 -865 37 -865 -865 170 -865 -865 -865 170 -865 -865 -865 170 -865 237 -865 -865 -865 -865 -865 -29 195 -865 -29 129 -865 237 -865 -865 -865 -865 -865 -865 237 37 -29 70 -865 -865 170 -865 -865 -865 -29 129 -865 -865 70 70 -865 -865 -865 170 -865 -865 -29 -865 195 -865 170 -865 -865 -865 -865 -865 237 -865 -865 -865 237 -865 129 -29 -865 -865 -865 -865 237 -865 -865 -29 195 -865 -865 129 37 -865 -865 -865 237 -865 -865 -29 195 -865 -865 170 -865 -865 -865 -29 195 -865 129 -865 37 -865 -29 129 -865 -865 129 -865 37 -865 -865 170 -865 -865 -29 70 37 -865 -865 170 -865 -865 170 -865 -865 -865 170 -865 -865 -865 -29 129 -865 -865 170 -865 -865 137 -865 70 -865 -865 -865 -865 237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 4 E= 1.9e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.250000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.750000 0.000000 0.250000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAVGTGGCGCGGGATGATVCGSGTCTTCTTGTTGTCGCGBGCCGCRT MEME-7 regular expression -------------------------------------------------------------------------------- TG[CG]A[GAC]GTG[GA]CG[CT]GGGA[TG][GC]AT[GAC]C[GC][CG]G[TC]CTT[CG]T[TG][GT]T[TG]G[TG][CT][GC][CT]G[GCT]GCC[GC]C[AG]T -------------------------------------------------------------------------------- Time 2343.44 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGAATSGAATGGAATSRAM MEME-8 width = 21 sites = 6 llr = 153 E-value = 2.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGAATSGAATGGAATSRAM MEME-8 Description -------------------------------------------------------------------------------- Simplified A a:::aa:::a8:::8a2:783 pos.-specific C :::::::5::::::::27::7 probability G ::aa:::5a:::a8:::33:: matrix T :a::::a:::2a:22:7::2: bits 2.4 ** *** * * * 2.1 ** *** * * * 1.9 ** *** * * * 1.7 ******* ***** ** * Relative 1.4 ******* ***** ** * Entropy 1.2 ******* ******** ** (36.8 bits) 0.9 ******* ********* *** 0.7 ********************* 0.5 ********************* 0.2 ********************* 0.0 --------------------- Multilevel ATGGAATCGAATGGAATCAAC consensus G GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAATSGAATGGAATSRAM MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrUn_GL000216v2:372-872 - 12 8.48e-14 TAGGAGTGAA ATGGAATGGAATGGAATCAAC GGGAGTGGAA chr1:125179946-125180446 - 64 9.76e-13 TTATCATCGA ATGGAATCGAATGGTATCAAC ACCAAACGGA chr10:42079430-42079930 + 5 9.76e-13 ttga atggaatcgaatggaatcatc atcagatgga chr20:31075487-31075987 + 53 1.46e-12 gtgcaacgga atggaatggaatggaaccaac ccgagtggaa chr10:41889520-41890020 + 27 4.67e-12 aatgcatgga atggaatcgaatgtaatggaa cggaagggaa chr20:31065649-31066149 + 77 1.59e-11 aatggaatga atggaatggattggaaaggaa tca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAATSGAATGGAATSRAM MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_GL000216v2:372-872 8.5e-14 11_[-8]_68 chr1:125179946-125180446 9.8e-13 63_[-8]_16 chr10:42079430-42079930 9.8e-13 4_[+8]_75 chr20:31075487-31075987 1.5e-12 52_[+8]_27 chr10:41889520-41890020 4.7e-12 26_[+8]_53 chr20:31065649-31066149 1.6e-11 76_[+8]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAATSGAATGGAATSRAM MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGAATSGAATGGAATSRAM width=21 seqs=6 chrUn_GL000216v2:372-872 ( 12) ATGGAATGGAATGGAATCAAC 1 chr1:125179946-125180446 ( 64) ATGGAATCGAATGGTATCAAC 1 chr10:42079430-42079930 ( 5) ATGGAATCGAATGGAATCATC 1 chr20:31075487-31075987 ( 53) ATGGAATGGAATGGAACCAAC 1 chr10:41889520-41890020 ( 27) ATGGAATCGAATGTAATGGAA 1 chr20:31065649-31066149 ( 77) ATGGAATGGATTGGAAAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAATSGAATGGAATSRAM MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47920 bayes= 14.0628 E= 2.5e-008 237 -923 -923 -923 -923 -923 -923 237 -923 -923 170 -923 -923 -923 170 -923 237 -923 -923 -923 237 -923 -923 -923 -923 -923 -923 237 -923 71 71 -923 -923 -923 170 -923 237 -923 -923 -923 210 -923 -923 -21 -923 -923 -923 237 -923 -923 170 -923 -923 -923 144 -21 210 -923 -923 -21 237 -923 -923 -923 -21 -88 -923 178 -923 112 12 -923 178 -923 12 -923 210 -923 -923 -21 78 112 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAATSGAATGGAATSRAM MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 6 E= 2.5e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.833333 0.000000 0.000000 0.166667 1.000000 0.000000 0.000000 0.000000 0.166667 0.166667 0.000000 0.666667 0.000000 0.666667 0.333333 0.000000 0.666667 0.000000 0.333333 0.000000 0.833333 0.000000 0.000000 0.166667 0.333333 0.666667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAATSGAATGGAATSRAM MEME-8 regular expression -------------------------------------------------------------------------------- ATGGAAT[CG]GAATGGAAT[CG][AG]A[CA] -------------------------------------------------------------------------------- Time 2644.02 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACCACACACA MEME-9 width = 12 sites = 26 llr = 316 E-value = 1.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACCACACACA MEME-9 Description -------------------------------------------------------------------------------- Simplified A 7:8:2a1a:a:7 pos.-specific C :82a7:8:9:92 probability G :::::::::::: matrix T 32::1:2:1:11 bits 2.4 * * 2.1 * * * 1.9 * * * 1.7 * * * * Relative 1.4 * * * * * Entropy 1.2 **** * ***** (17.5 bits) 0.9 **** ******* 0.7 ************ 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel ACACCACACACA consensus TT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCACACACA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr22:45979290-45979790 + 80 4.38e-08 aacacaccac acaccacacaca acacacaca chr3:13199797-13200297 + 2 4.38e-08 c acaccacacaca cacgccacat chr12:122094849-12209534 - 81 4.38e-08 GCACACAG ACACCACACACA TACCCACACC chr16:85522948-85523448 - 80 7.15e-08 GTCACACGC ACACAACACACA GGGGACACAC chr12:55972876-55973376 + 34 9.93e-08 atacacacat ataccacacaca ccacgtatac chr21:38913942-38914442 + 57 9.93e-08 catgcaacac ataccacacaca acacatacaa chr20:49278493-49278993 - 38 1.43e-07 GAGTTTCCAC TCACCACACACA AAACGGGAAC chr18:63103558-63104058 - 1 1.71e-07 CATACCCCAC ACACCATACACA chr7:155918713-155919213 - 75 2.16e-07 AGAAACACAC ACACTACACACA ATGCACACTC chr22:50338947-50339447 - 72 4.31e-07 CACCGTAAAC ACACCACACACC CTACACACAC chr8:41827589-41828089 + 80 5.46e-07 ccactcacac accccacacaca tgctcacgc chr16:85572088-85572588 + 41 2.15e-06 cacaccacac acaccacatacc cctccacaca chr4:189234913-189235413 - 88 2.47e-06 T ACACCAAACACC ACCACAGAGC chr19:40827007-40827507 + 88 2.47e-06 CGATGTGGCA TCACAACACATA C chr12:132156878-13215737 + 42 2.47e-06 cacattacac acactacacact ccactatgca chr4:189233710-189234210 - 67 2.47e-06 TACTGCAACT ACACCAAACACC ACCACAGAGC chr1:236101433-236101933 - 23 2.86e-06 CACCCACATA ACACAACACTCA CCCACACTCA chr19:39845648-39846148 + 17 2.86e-06 AAATGGGGGC TTCCCACACACA GCTCCAGGAC chr20:47257254-47257754 + 1 2.86e-06 . tcaccatataca cacacgcaaa chr5:3323704-3324204 - 88 3.15e-06 C ACCCCACACACC AAGTGCATCA chr19:12919084-12919584 - 54 3.15e-06 GGAGCACGCG TCACAACACACT CGTCCGCGGG chr10:46525378-46525878 + 37 3.69e-06 acaaccacac atgccacacaca caaccacaca chr10:101830477-10183097 + 86 4.16e-06 GCGGCACGCC TCCCCATACACA CAC chr10:110209299-11020979 - 29 4.16e-06 ACCACCGACC TCACAACACAAA TCCTCGTTTT chr3:194352416-194352916 - 67 6.72e-06 ACACACTCTC ATTCTACACACA CGAGACATAC chrUn_KI270467v1:2001-25 + 83 1.28e-05 tatgtacagt atacaatatata ttttgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCACACACA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:45979290-45979790 4.4e-08 79_[+9]_9 chr3:13199797-13200297 4.4e-08 1_[+9]_87 chr12:122094849-12209534 4.4e-08 80_[-9]_8 chr16:85522948-85523448 7.2e-08 79_[-9]_9 chr12:55972876-55973376 9.9e-08 33_[+9]_55 chr21:38913942-38914442 9.9e-08 56_[+9]_32 chr20:49278493-49278993 1.4e-07 37_[-9]_51 chr18:63103558-63104058 1.7e-07 [-9]_88 chr7:155918713-155919213 2.2e-07 74_[-9]_14 chr22:50338947-50339447 4.3e-07 71_[-9]_17 chr8:41827589-41828089 5.5e-07 79_[+9]_9 chr16:85572088-85572588 2.1e-06 40_[+9]_48 chr4:189234913-189235413 2.5e-06 87_[-9]_1 chr19:40827007-40827507 2.5e-06 87_[+9]_1 chr12:132156878-13215737 2.5e-06 41_[+9]_47 chr4:189233710-189234210 2.5e-06 66_[-9]_22 chr1:236101433-236101933 2.9e-06 22_[-9]_66 chr19:39845648-39846148 2.9e-06 16_[+9]_72 chr20:47257254-47257754 2.9e-06 [+9]_88 chr5:3323704-3324204 3.1e-06 87_[-9]_1 chr19:12919084-12919584 3.1e-06 53_[-9]_35 chr10:46525378-46525878 3.7e-06 36_[+9]_52 chr10:101830477-10183097 4.2e-06 85_[+9]_3 chr10:110209299-11020979 4.2e-06 28_[-9]_60 chr3:194352416-194352916 6.7e-06 66_[-9]_22 chrUn_KI270467v1:2001-25 1.3e-05 82_[+9]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCACACACA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACCACACACA width=12 seqs=26 chr22:45979290-45979790 ( 80) ACACCACACACA 1 chr3:13199797-13200297 ( 2) ACACCACACACA 1 chr12:122094849-12209534 ( 81) ACACCACACACA 1 chr16:85522948-85523448 ( 80) ACACAACACACA 1 chr12:55972876-55973376 ( 34) ATACCACACACA 1 chr21:38913942-38914442 ( 57) ATACCACACACA 1 chr20:49278493-49278993 ( 38) TCACCACACACA 1 chr18:63103558-63104058 ( 1) ACACCATACACA 1 chr7:155918713-155919213 ( 75) ACACTACACACA 1 chr22:50338947-50339447 ( 72) ACACCACACACC 1 chr8:41827589-41828089 ( 80) ACCCCACACACA 1 chr16:85572088-85572588 ( 41) ACACCACATACC 1 chr4:189234913-189235413 ( 88) ACACCAAACACC 1 chr19:40827007-40827507 ( 88) TCACAACACATA 1 chr12:132156878-13215737 ( 42) ACACTACACACT 1 chr4:189233710-189234210 ( 67) ACACCAAACACC 1 chr1:236101433-236101933 ( 23) ACACAACACTCA 1 chr19:39845648-39846148 ( 17) TTCCCACACACA 1 chr20:47257254-47257754 ( 1) TCACCATATACA 1 chr5:3323704-3324204 ( 88) ACCCCACACACC 1 chr19:12919084-12919584 ( 54) TCACAACACACT 1 chr10:46525378-46525878 ( 37) ATGCCACACACA 1 chr10:101830477-10183097 ( 86) TCCCCATACACA 1 chr10:110209299-11020979 ( 29) TCACAACACAAA 1 chr3:194352416-194352916 ( 67) ATTCTACACACA 1 chrUn_KI270467v1:2001-25 ( 83) ATACAATATATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCACACACA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53311 bayes= 12.1658 E= 1.6e-008 192 -1134 -1134 48 -1134 133 -1134 25 199 -99 -299 -233 -1134 171 -1134 -1134 25 109 -1134 -75 237 -1134 -1134 -1134 -133 133 -1134 -33 237 -1134 -1134 -1134 -1134 153 -1134 -75 231 -1134 -1134 -233 -233 153 -1134 -133 192 -67 -1134 -133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCACACACA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 26 E= 1.6e-008 0.730769 0.000000 0.000000 0.269231 0.000000 0.769231 0.000000 0.230769 0.769231 0.153846 0.038462 0.038462 0.000000 1.000000 0.000000 0.000000 0.230769 0.653846 0.000000 0.115385 1.000000 0.000000 0.000000 0.000000 0.076923 0.769231 0.000000 0.153846 1.000000 0.000000 0.000000 0.000000 0.000000 0.884615 0.000000 0.115385 0.961538 0.000000 0.000000 0.038462 0.038462 0.884615 0.000000 0.076923 0.730769 0.192308 0.000000 0.076923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACCACACACA MEME-9 regular expression -------------------------------------------------------------------------------- [AT][CT]AC[CA]ACACACA -------------------------------------------------------------------------------- Time 2945.45 secs. ******************************************************************************** ******************************************************************************** MOTIF KGTGWGTGTGTG MEME-10 width = 12 sites = 33 llr = 364 E-value = 8.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGTGWGTGTGTG MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::::612:1::: pos.-specific C 21:1121:11:: probability G 49:9:5:a:9:a matrix T 5:a:327:9:9: bits 2.4 * 2.1 * 1.9 * * 1.7 * ** * Relative 1.4 *** ** ** Entropy 1.2 *** ***** (15.9 bits) 0.9 **** ****** 0.7 **** ****** 0.5 ***** ****** 0.2 ************ 0.0 ------------ Multilevel TGTGAGTGTGTG consensus G TCA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGWGTGTGTG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr8:38769681-38770181 + 50 2.28e-07 gtgtggtgtg tgtgactgtgtg tatggtgtgt chr12:1604968-1605468 + 42 2.72e-07 aaagtgtgtg tgtgagagtgtg tgggggaggg chr16:57628749-57629249 + 80 2.72e-07 agcgtttgag tgtgagagtgtg agtgagtgt chr20:26009868-26010368 + 37 6.66e-07 GTGGACAACC GGTGACTGTGTG GTTGGGGCTG chr19:36772267-36772767 - 31 6.66e-07 GTGAAGAACC GGTGACTGTGTG GTTGGACTGC chr22:50525314-50525814 - 56 1.06e-06 GCGCCCTGCC TGTGAGCGTGTG GCGCCCGCTT chr14:19374395-19374895 + 7 1.06e-06 TGTCCA TGTGACAGTGTG GTGATGTCTC chr2:172098602-172099102 + 59 1.06e-06 TAGATGGGCC TGTGACAGTGTG CTCAGTGTGT chr19:39498285-39498785 - 2 1.27e-06 TACACGACTT CGTGATTGTGTG A chr10:122724589-12272508 - 3 1.27e-06 GTGAGTGGTG GGTGTGAGTGTG AG chr14:104526959-10452745 - 83 1.30e-06 TATGTG TGTGAAAGTGTG AAAATGTGGG chr22:45979290-45979790 - 35 1.64e-06 TGTTGTGTGT GGTGTATGTGTG TTTTGTGTCG chr6:79077908-79078408 + 44 1.81e-06 GCCCTATAGC TGTCAGTGTGTG TTCACGAGCC chr18:33579004-33579504 + 3 2.52e-06 TG CGTGTCTGTGTG CCATGTCGTG chr20:52972221-52972721 + 82 2.52e-06 tgcgtgcgcg tgtgagtgcgtg tgtgagt chr10:116273349-11627384 - 86 2.52e-06 GAG TGTGTGTGTCTG GCAGCACCCG chr11:73376994-73377494 + 48 3.38e-06 CTGGCGCCAT Ggtgtgcgtgtg gggtcaagtg chr22:50338947-50339447 + 25 3.38e-06 tggtgtgtgt ggtgtgcgtgtg gtatgtagtg chr19:49085351-49085851 + 85 3.78e-06 GGCGCTACGC GGTGAGTGAGTG TGAC chr13:113208585-11320908 + 77 3.78e-06 CGCCAGCGGC TCTGATTGTGTG TTCGGGCCCG chr1:109911169-109911669 + 53 3.78e-06 GTGGCTGTGC GCTGAGTGTGTG CCCTCCCCGG chr14:103105049-10310554 + 44 4.08e-06 GCTGAGGGTG TGTGCCTGTGTG TGCATGCGTG chr21:33895247-33895747 + 47 4.08e-06 CGTGCATGCA TGTGTGTGCGTG CGCGTGTTtg chr16:681706-682206 + 1 5.83e-06 . GGTCTGTGTGTG TGCACGTGGC chr10:46525378-46525878 - 24 6.69e-06 GTGTGGCATG TGTGGTTGTGTG TGCGATGTGT chr14:95258707-95259207 + 87 6.69e-06 gcgtggagag tgtgtttgtatg ta chr20:36092880-36093380 + 11 7.44e-06 TGTGCGCGCG CGTGCGTGTGTG CGCCGGGTGT chr19:33274159-33274659 + 5 9.44e-06 agca tgtgtatgagtg cacacagttg chr19:36572756-36573256 - 31 9.44e-06 TCTACGGTGA CGTGATCGTGTG ACAGCACTGT chr1:41661552-41662052 + 16 9.44e-06 GCCGCGCCGG GGTGAGAGTCTG CGCTGGACAC chr1:236101433-236101933 + 11 1.03e-05 tgtacgcgtg ggtgagtgtggg tgagtgttgt chr19:12156268-12156768 - 77 1.03e-05 GCCGGGAAAT GGTGAGTGTGCG GGGCCGGGGG chr8:16825852-16826352 - 12 1.49e-05 TGTGTGTGTG CGTGTGTGTGTA TCTGCAGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGWGTGTGTG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:38769681-38770181 2.3e-07 49_[+10]_39 chr12:1604968-1605468 2.7e-07 41_[+10]_47 chr16:57628749-57629249 2.7e-07 79_[+10]_9 chr20:26009868-26010368 6.7e-07 36_[+10]_52 chr19:36772267-36772767 6.7e-07 30_[-10]_58 chr22:50525314-50525814 1.1e-06 55_[-10]_33 chr14:19374395-19374895 1.1e-06 6_[+10]_82 chr2:172098602-172099102 1.1e-06 58_[+10]_30 chr19:39498285-39498785 1.3e-06 1_[-10]_87 chr10:122724589-12272508 1.3e-06 2_[-10]_86 chr14:104526959-10452745 1.3e-06 82_[-10]_6 chr22:45979290-45979790 1.6e-06 34_[-10]_54 chr6:79077908-79078408 1.8e-06 43_[+10]_45 chr18:33579004-33579504 2.5e-06 2_[+10]_86 chr20:52972221-52972721 2.5e-06 81_[+10]_7 chr10:116273349-11627384 2.5e-06 85_[-10]_3 chr11:73376994-73377494 3.4e-06 47_[+10]_41 chr22:50338947-50339447 3.4e-06 24_[+10]_64 chr19:49085351-49085851 3.8e-06 84_[+10]_4 chr13:113208585-11320908 3.8e-06 76_[+10]_12 chr1:109911169-109911669 3.8e-06 52_[+10]_36 chr14:103105049-10310554 4.1e-06 43_[+10]_45 chr21:33895247-33895747 4.1e-06 46_[+10]_42 chr16:681706-682206 5.8e-06 [+10]_88 chr10:46525378-46525878 6.7e-06 23_[-10]_65 chr14:95258707-95259207 6.7e-06 86_[+10]_2 chr20:36092880-36093380 7.4e-06 10_[+10]_78 chr19:33274159-33274659 9.4e-06 4_[+10]_84 chr19:36572756-36573256 9.4e-06 30_[-10]_58 chr1:41661552-41662052 9.4e-06 15_[+10]_73 chr1:236101433-236101933 1e-05 10_[+10]_78 chr19:12156268-12156768 1e-05 76_[-10]_12 chr8:16825852-16826352 1.5e-05 11_[-10]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGWGTGTGTG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGTGWGTGTGTG width=12 seqs=33 chr8:38769681-38770181 ( 50) TGTGACTGTGTG 1 chr12:1604968-1605468 ( 42) TGTGAGAGTGTG 1 chr16:57628749-57629249 ( 80) TGTGAGAGTGTG 1 chr20:26009868-26010368 ( 37) GGTGACTGTGTG 1 chr19:36772267-36772767 ( 31) GGTGACTGTGTG 1 chr22:50525314-50525814 ( 56) TGTGAGCGTGTG 1 chr14:19374395-19374895 ( 7) TGTGACAGTGTG 1 chr2:172098602-172099102 ( 59) TGTGACAGTGTG 1 chr19:39498285-39498785 ( 2) CGTGATTGTGTG 1 chr10:122724589-12272508 ( 3) GGTGTGAGTGTG 1 chr14:104526959-10452745 ( 83) TGTGAAAGTGTG 1 chr22:45979290-45979790 ( 35) GGTGTATGTGTG 1 chr6:79077908-79078408 ( 44) TGTCAGTGTGTG 1 chr18:33579004-33579504 ( 3) CGTGTCTGTGTG 1 chr20:52972221-52972721 ( 82) TGTGAGTGCGTG 1 chr10:116273349-11627384 ( 86) TGTGTGTGTCTG 1 chr11:73376994-73377494 ( 48) GGTGTGCGTGTG 1 chr22:50338947-50339447 ( 25) GGTGTGCGTGTG 1 chr19:49085351-49085851 ( 85) GGTGAGTGAGTG 1 chr13:113208585-11320908 ( 77) TCTGATTGTGTG 1 chr1:109911169-109911669 ( 53) GCTGAGTGTGTG 1 chr14:103105049-10310554 ( 44) TGTGCCTGTGTG 1 chr21:33895247-33895747 ( 47) TGTGTGTGCGTG 1 chr16:681706-682206 ( 1) GGTCTGTGTGTG 1 chr10:46525378-46525878 ( 24) TGTGGTTGTGTG 1 chr14:95258707-95259207 ( 87) TGTGTTTGTATG 1 chr20:36092880-36093380 ( 11) CGTGCGTGTGTG 1 chr19:33274159-33274659 ( 5) TGTGTATGAGTG 1 chr19:36572756-36573256 ( 31) CGTGATCGTGTG 1 chr1:41661552-41662052 ( 16) GGTGAGAGTCTG 1 chr1:236101433-236101933 ( 11) GGTGAGTGTGGG 1 chr19:12156268-12156768 ( 77) GGTGAGTGTGCG 1 chr8:16825852-16826352 ( 12) CGTGTGTGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGWGTGTGTG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53311 bayes= 12.0014 E= 8.1e-004 -1169 -102 25 132 -1169 -234 162 -1169 -1169 -1169 -1169 237 -1169 -234 162 -1169 157 -234 -333 78 -109 -53 83 -35 13 -134 -1169 178 -1169 -1169 171 -1169 -167 -234 -1169 218 -267 -234 157 -1169 -1169 -333 -333 228 -267 -1169 166 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGWGTGTGTG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 33 E= 8.1e-004 0.000000 0.151515 0.363636 0.484848 0.000000 0.060606 0.939394 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.060606 0.939394 0.000000 0.575758 0.060606 0.030303 0.333333 0.090909 0.212121 0.545455 0.151515 0.212121 0.121212 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.060606 0.060606 0.000000 0.878788 0.030303 0.060606 0.909091 0.000000 0.000000 0.030303 0.030303 0.939394 0.030303 0.000000 0.969697 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTGWGTGTGTG MEME-10 regular expression -------------------------------------------------------------------------------- [TG]GTG[AT][GC][TA]GTGTG -------------------------------------------------------------------------------- Time 3246.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:39406788-39407288 8.06e-01 100 chr6:6007277-6007777 1.70e-03 5_[-3(9.37e-05)]_51_[+2(7.88e-06)] chr10:122724589-12272508 1.19e-12 2_[-10(1.27e-06)]_2_[+1(6.43e-11)]_\ [+2(2.34e-07)]_1_[+1(2.23e-07)]_3 chr7:27175133-27175633 1.27e-07 36_[+9(2.60e-05)]_14_[-3(1.77e-08)]_\ 16 chr8:123157495-123157995 1.20e-15 25_[+2(5.27e-14)]_53 chr1:151070396-151070896 8.58e-02 100 chr5:178204375-178204875 6.81e-01 100 chr7:100093719-100094219 4.28e-01 100 chr12:6606957-6607457 6.74e-01 100 chr5:140647763-140648263 4.68e-23 45_[-1(1.31e-18)]_2_[-2(2.79e-09)]_\ 2 chr1:167936774-167937274 6.44e-01 100 chr16:30874926-30875426 7.30e-01 100 chr1:108199760-108200260 8.16e-01 100 chr1:244834096-244834596 2.15e-07 7_[+2(1.24e-07)]_23_[+1(3.61e-07)]_\ 19 chr7:100127218-100127718 5.64e-01 100 chr19:38852674-38853174 9.10e-01 100 chr9:136848077-136848577 1.48e-02 5_[-1(7.13e-05)]_66 chr3:12484349-12484849 2.83e-02 57_[+3(7.90e-05)]_21 chr8:38104957-38105457 8.20e-01 100 chr20:47257254-47257754 2.06e-15 [+9(2.86e-06)]_16_[+2(1.34e-08)]_3_\ [+1(1.50e-10)]_18 chr14:104526959-10452745 2.26e-16 3_[+2(5.31e-06)]_2_[+1(5.29e-14)]_9_\ [+1(1.92e-08)]_6 chr6:89353076-89353576 1.72e-33 3_[-1(5.97e-10)]_14_[+4(2.96e-22)]_\ 11 chr17:7572766-7573266 3.91e-01 25_[+3(3.48e-05)]_53 chr19:39997114-39997614 6.07e-08 2_[-2(8.38e-08)]_33_[-1(1.23e-06)]_\ 14 chrX:153927731-153928231 2.53e-01 100 chr17:50866022-50866522 2.65e-01 100 chr19:4455942-4456442 6.13e-01 100 chr10:96513473-96513973 8.35e-01 100 chr16:56932176-56932676 9.90e-01 100 chr16:29804875-29805375 3.03e-01 63_[+3(8.61e-05)]_15 chr19:12156268-12156768 9.48e-03 38_[-3(1.72e-05)]_16_\ [-10(1.03e-05)]_12 chr19:39845648-39846148 2.37e-02 16_[+9(2.86e-06)]_72 chr21:33895247-33895747 2.49e-13 14_[-1(3.05e-08)]_3_[+10(4.08e-06)]_\ 2_[-1(4.67e-12)]_11 chr1:109911169-109911669 1.90e-02 [-3(2.34e-05)]_30_[+10(3.78e-06)]_\ 36 chr10:42079430-42079930 1.00e-06 4_[+8(9.76e-13)]_5_[+8(2.28e-09)]_5_\ [+8(2.54e-09)]_2_[+8(3.13e-09)] chr6:56542495-56542995 9.98e-01 100 chr1:26921769-26922269 3.03e-01 [-3(1.11e-05)]_78 chr2:231786192-231786692 8.95e-01 100 chr20:33663218-33663718 9.09e-01 100 chr17:60525641-60526141 2.29e-02 58_[+6(7.65e-05)]_2 chr12:92928329-92928829 8.54e-02 100 chr10:110209299-11020979 4.74e-07 28_[-9(4.16e-06)]_13_[-3(1.31e-06)]_\ 25 chr6:32978979-32979479 3.57e-03 39_[+5(1.39e-05)]_1_[-2(3.13e-05)]_\ 16 chr8:144526654-144527154 9.08e-01 100 chr15:60392919-60393419 7.57e-01 100 chr18:49487143-49487643 8.85e-01 100 chr7:100428663-100429163 7.07e-03 41_[-1(3.65e-05)]_30 chr19:29528472-29528972 9.96e-01 100 chr16:88811135-88811635 8.87e-01 100 chr16:57628749-57629249 4.70e-14 9_[-1(1.80e-11)]_3_[-1(6.67e-10)]_1_\ [-1(6.81e-08)] chr9:130712899-130713399 9.93e-01 100 chr19:47608181-47608681 7.08e-03 16_[-3(2.76e-07)]_62 chr16:181033-181533 5.10e-01 15_[-7(8.41e-05)]_36 chr17:38730421-38730921 1.30e-03 3_[-3(8.61e-05)]_24_[-3(9.79e-07)]_\ 29 chr19:38975252-38975752 9.96e-01 100 chr6:1622323-1622823 1.15e-10 6_[-1(1.03e-09)]_65 chr6:28747594-28748094 1.24e-01 24_[-2(1.27e-05)]_54 chr19:44113400-44113900 1.15e-01 100 chr18:22169445-22169945 5.93e-03 67_[-3(1.13e-06)]_11 chr12:1223028-1223528 5.93e-06 3_[-6(4.44e-10)]_57 chr3:15098451-15098951 2.71e-07 48_[+1(6.73e-07)]_23 chr4:189233710-189234210 5.99e-07 [-2(1.16e-05)]_4_[-1(2.84e-07)]_5_\ [-1(1.32e-06)]_11 chr19:2840806-2841306 5.61e-01 23_[-3(1.72e-05)]_55 chr20:35953563-35954063 3.85e-02 45_[+6(3.97e-06)]_15 chr6:134052066-134052566 1.29e-23 [+1(1.31e-18)]_71 chr2:8681963-8682463 9.63e-01 100 chr17:79810284-79810784 2.13e-01 2_[-3(3.84e-06)]_76 chr17:3890147-3890647 1.24e-01 57_[-3(2.12e-05)]_21 chr16:8590688-8591188 1.21e-15 20_[+6(6.98e-13)]_6_[+1(8.46e-06)]_\ 5 chr19:33301071-33301571 9.31e-01 100 chr19:49929497-49929997 8.36e-01 100 chr12:132156878-13215737 1.23e-13 23_[+9(2.16e-07)]_6_[+9(2.47e-06)]_\ 16_[+1(1.90e-10)]_2 chr12:1604968-1605468 1.95e-15 3_[-1(2.65e-12)]_9_[-1(1.38e-11)]_1_\ [-1(2.54e-08)] chr14:23006636-23007136 7.20e-01 53_[+3(9.37e-05)]_25 chr16:30418027-30418527 5.65e-01 100 chr15:65530500-65531000 2.83e-01 35_[-4(4.24e-05)]_22 chr15:82709021-82709521 1.72e-01 37_[-5(4.16e-05)]_41 chr8:144082312-144082812 9.99e-01 100 chr1:3403643-3404143 5.20e-01 100 chr10:15796169-15796669 1.35e-05 8_[-6(7.52e-10)]_52 chr6:27592562-27593062 5.41e-02 100 chr5:177454851-177455351 4.41e-01 100 chr6:27837873-27838373 3.01e-19 12_[+7(8.24e-28)]_39 chr3:49029076-49029576 3.41e-01 100 chr1:184386519-184387019 2.88e-24 43_[+2(7.35e-12)]_6_[+1(1.31e-18)] chrX:118346107-118346607 4.92e-01 100 chr1:174799608-174800108 4.71e-02 100 chr16:86509112-86509612 7.72e-06 7_[-2(5.23e-05)]_18_[-2(3.70e-08)]_\ 31 chr9:137188143-137188643 4.50e-01 100 chr16:727167-727667 9.29e-01 100 chr3:105366548-105367048 8.63e-02 75_[+3(5.32e-07)]_3 chr19:40715512-40716012 1.12e-02 100 chr7:102572208-102572708 2.42e-01 15_[-7(6.70e-05)]_36 chr18:63103558-63104058 8.08e-14 [-9(1.71e-07)]_18_[-9(4.38e-08)]_\ [-1(1.50e-10)]_4_[-9(4.31e-07)]_13 chr18:50629064-50629564 4.03e-01 100 chr1:167935713-167936213 2.82e-01 54_[-3(1.51e-06)]_24 chr22:42368760-42369260 9.32e-01 100 chr5:36690349-36690849 1.19e-01 52_[-8(2.61e-05)]_27 chr1:81808556-81809056 4.38e-03 33_[+6(9.71e-07)]_27 chr21:38913942-38914442 8.97e-11 1_[+9(1.88e-07)]_4_[+9(7.15e-08)]_4_\ [+9(9.93e-08)]_11_[+9(9.93e-08)]_[+2(4.25e-08)]_10 chr12:6829005-6829505 6.24e-13 18_[+3(3.83e-05)]_22_[-1(4.94e-09)]_\ 9 chr19:58554615-58555115 2.79e-01 100 chr19:11355890-11356390 2.93e-06 [-1(2.05e-07)]_12_[-2(1.69e-06)]_37 chr1:236101433-236101933 1.03e-16 7_[-2(3.81e-07)]_9_[-1(4.26e-10)]_8_\ [-2(9.93e-10)]_3 chrX:53317171-53317671 2.59e-03 24_[+8(2.53e-05)]_55 chr16:29805460-29805960 4.46e-02 59_[+3(6.27e-06)]_19 chr6:1388127-1388627 7.86e-02 11_[-3(7.90e-05)]_24_[-3(4.53e-07)]_\ 21 chr9:137241104-137241604 2.28e-03 17_[+6(4.33e-05)]_43 chr1:109484021-109484521 3.42e-01 100 chr1:225653342-225653842 9.83e-01 100 chr5:72107442-72107942 4.18e-01 100 chr1:149811937-149812437 7.14e-01 100 chr9:83707624-83708124 8.57e-01 100 chr17:7234355-7234855 8.04e-02 6_[-3(9.37e-05)]_20_[+10(6.63e-05)]_\ 40 chr17:8015893-8016393 1.02e-01 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58_[-6(3.70e-16)]_2 chr8:144428000-144428500 7.16e-01 100 chr10:102644858-10264535 7.48e-01 38_[+10(6.23e-05)]_50 chr1:145281054-145281554 5.34e-03 57_[-2(1.39e-05)]_21 chr1:31937347-31937847 2.41e-06 [+1(9.03e-06)]_9_[+2(6.17e-05)]_\ [+1(2.90e-06)]_11 chr5:173327957-173328457 1.50e-01 73_[-3(1.51e-06)]_5 chr17:45148440-45148940 1.39e-01 100 chr17:26619777-26620277 2.23e-03 37_[+2(7.88e-06)]_41 chr19:41310148-41310648 5.02e-01 100 chr6:144215890-144216390 2.85e-02 100 chr19:35643439-35643939 6.94e-01 100 chr19:44207489-44207989 7.98e-02 100 chr15:70097461-70097961 1.25e-01 41_[-3(1.72e-05)]_37 chr1:145287439-145287939 5.06e-01 100 chr9:95507824-95508324 1.98e-20 7_[-1(1.28e-12)]_12_[-2(5.11e-11)]_\ 30 chr17:81397072-81397572 2.07e-01 23_[-2(4.06e-05)]_55 chr1:146376878-146377378 7.21e-01 100 chr16:88811898-88812398 9.74e-01 100 chr10:70148468-70148968 3.27e-14 55_[-4(6.77e-21)]_2 chr17:7484243-7484743 4.66e-05 42_[-3(1.51e-06)]_11_[-3(4.22e-08)]_\ 3 chr16:29807607-29808107 3.83e-01 55_[+3(1.91e-05)]_23 chr1:234608180-234608680 1.01e-02 3_[-3(2.76e-07)]_75 chr15:67063934-67064434 9.00e-01 100 chr21:39313558-39314058 2.09e-01 76_[+3(5.07e-05)]_2 chr16:74813005-74813505 7.44e-01 100 chr16:679399-679899 7.62e-02 55_[-3(2.12e-05)]_23 chr17:77555815-77556315 3.24e-02 56_[-3(1.72e-05)]_22 chr16:681706-682206 1.20e-15 [+10(5.83e-06)]_[+7(9.57e-21)]_39 chr19:36837909-36838409 8.71e-26 6_[+1(4.33e-18)]_30_[+2(4.42e-05)]_\ 13 chr1:28648514-28649014 1.12e-06 17_[+5(1.83e-09)]_14_[-1(1.09e-05)]_\ 18 chr16:58515066-58515566 9.06e-01 100 chr12:102120112-10212061 1.83e-02 100 chr14:90396942-90397442 2.79e-02 54_[-3(3.85e-07)]_24 chr5:176591613-176592113 6.69e-13 3_[-6(6.13e-11)]_7_[-6(7.51e-14)]_\ 10 chr16:70251566-70252066 8.64e-01 100 chr12:6937924-6938424 8.00e-02 24_[-1(5.42e-05)]_47 chr16:684342-684842 4.77e-01 100 chr19:1748662-1749162 9.23e-01 100 chr2:131682409-131682909 1.54e-02 22_[-3(8.44e-07)]_56 chr19:58367817-58368317 7.58e-01 100 chr17:36935068-36935568 9.86e-01 100 chr22:50525314-50525814 2.11e-02 55_[-10(1.06e-06)]_33 chr16:25257954-25258454 2.24e-03 1_[+3(2.33e-07)]_77 chr11:102110208-10211070 1.53e-03 64_[+3(1.95e-07)]_14 chr17:81345257-81345757 1.93e-01 100 chr16:401764-402264 8.69e-01 100 chr11:65117350-65117850 9.55e-01 100 chrX:49073973-49074473 1.57e-01 100 chr17:26603646-26604146 4.38e-03 36_[+2(4.06e-05)]_42 chr4:52712258-52712758 4.40e-01 100 chr22:19854931-19855431 9.94e-01 100 chr19:17334636-17335136 7.95e-01 100 chr5:137889075-137889575 9.97e-01 100 chr19:37655850-37656350 2.33e-01 100 chr17:48619836-48620336 3.23e-01 40_[-3(5.55e-05)]_38 chr5:43064718-43065218 4.55e-02 100 chr11:62787177-62787677 7.63e-01 100 chr17:81393008-81393508 8.90e-01 100 chr6:4018180-4018680 7.32e-01 100 chr22:41446803-41447303 7.46e-05 [-3(1.63e-07)]_20_[-8(7.36e-05)]_37 chrUn_KI270466v1:187-687 7.30e-13 6_[+5(4.06e-12)]_20_[+5(3.50e-15)]_\ 15_[-9(2.69e-05)]_3 chr11:59550312-59550812 3.42e-01 100 chrUn_KI270467v1:2001-25 5.89e-08 11_[+5(6.34e-09)]_20_[+5(2.66e-10)]_\ 7_[+9(1.28e-05)]_6 chrUn_KI270467v1:2961-34 4.33e-13 10_[+5(6.11e-12)]_20_[+5(1.59e-13)]_\ 26 chr1:125179946-125180446 1.58e-08 14_[-8(6.26e-08)]_2_[-8(6.22e-05)]_\ 5_[-8(9.76e-13)]_16 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************