******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:115594438-115594938 1.0000 100 chrX:73945082-73945582 1.0000 100 chr4:174423235-174423735 1.0000 100 chr10:26859172-26859672 1.0000 100 chr6:128367593-128368093 1.0000 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chr5:140295372-140295872 1.0000 100 chr5:86030695-86031195 1.0000 100 chr5:110054175-110054675 1.0000 100 chr19:57642377-57642877 1.0000 100 chr12:120646970-12064747 1.0000 100 chr17:26603645-26604145 1.0000 100 chr6:85600684-85601184 1.0000 100 chr10:126208885-12620938 1.0000 100 chr21:16420004-16420504 1.0000 100 chr1:45875937-45876437 1.0000 100 chr8:17495811-17496311 1.0000 100 chr5:54249597-54250097 1.0000 100 chr21:34543880-34544380 1.0000 100 chr10:15409258-15409758 1.0000 100 chr13:78802864-78803364 1.0000 100 chr4:82796906-82797406 1.0000 100 chr3:99868283-99868783 1.0000 100 chr5:77168823-77169323 1.0000 100 chr12:65327036-65327536 1.0000 100 chr2:178484585-178485085 1.0000 100 chr5:10601228-10601728 1.0000 100 chr18:45755939-45756439 1.0000 100 chr7:112572660-112573160 1.0000 100 chr5:81736003-81736503 1.0000 100 chr5:41747187-41747687 1.0000 100 chr5:125198472-125198972 1.0000 100 chr10:21724692-21725192 1.0000 100 chr12:121404675-12140517 1.0000 100 chr1:80054149-80054649 1.0000 100 chr2:165824993-165825493 1.0000 100 chr12:65624481-65624981 1.0000 100 chrUn_KI270466v1:230-730 1.0000 100 chr1:78620121-78620621 1.0000 100 chr10:87586167-87586667 1.0000 100 chr14:49861990-49862490 1.0000 100 chrUn_KI270467v1:3139-36 1.0000 100 chrUn_KI270467v1:2687-31 1.0000 100 chrUn_KI270467v1:2006-25 1.0000 100 chr16:1271731-1272231 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 498 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 49800 N= 498 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.302 C 0.198 G 0.198 T 0.302 ******************************************************************************** ******************************************************************************** MOTIF YTGGCACHDTGCCA MEME-1 width = 14 sites = 302 llr = 4249 E-value = 3.2e-975 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTGGCACHDTGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::71231:::a pos.-specific C 3:::a:641::aa: probability G ::aa::2:21a::: matrix T 7a:::21337:::: bits 2.3 *** *** 2.1 *** *** 1.9 *** *** 1.6 **** **** Relative 1.4 **** **** Entropy 1.2 **** **** (20.3 bits) 0.9 ***** **** 0.7 ******* **** 0.5 ******* ***** 0.2 ******** ***** 0.0 -------------- Multilevel TTGGCACCTTGCCA consensus C TGTA sequence AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGGCACHDTGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr8:364361-364861 + 51 1.17e-09 cataaagatg ttggcaccgtgcca agctctcagc chr8:119087473-119087973 - 26 1.17e-09 TTTACAGAAT TTGGCACCGTGCCA AATTTTTCAG chr1:74964427-74964927 + 20 1.17e-09 GATGAAGCTC TTGGCACCGTGCCA TCGATTCTGC chr13:78802864-78803364 + 33 2.97e-09 ttttgtgttc ttggcaccttgcca aaaattgctt chrX:74514388-74514888 - 52 2.97e-09 TGACACCACC TTGGCACCTTGCCA GGAGTAGGAG chr8:59664023-59664523 - 30 2.97e-09 ATCCAGTTTC TTGGCACCTTGCCA GCATTTAACG chr1:52502740-52503240 + 54 3.74e-09 cactatggac ctggcaccgtgcca agtgctttac chr1:61808867-61809367 - 53 6.70e-09 AAGTTGTCTT CTGGCACCTTGCCA ACAGAAATAA chr6:141486883-141487383 + 49 6.70e-09 GAGTATGATC CTGGCACCTTGCCA AGAAACACAT chr1:78334038-78334538 - 33 6.70e-09 AGGAATTATG TTGGCACCATGCCA AATGAGTCTT chr6:110207589-110208089 + 54 6.70e-09 CTTTGAGTAC TTGGCACCATGCCA ACCCTGTAGA chr12:60947481-60947981 - 37 6.70e-09 ATAAGATCTA TTGGCACCATGCCA GATATTCAGG chr19:28473798-28474298 - 15 6.70e-09 GGACCTCCGC TTGGCACCATGCCA CATGTCAGGT chr6:126889984-126890484 + 62 6.70e-09 GCAAAAGCAG CTGGCACCTTGCCA GGTGGGCTCC chr4:110678477-110678977 + 37 6.70e-09 cacctcgggc ttggcaccatgcca ggcatctagc chr16:1271731-1272231 + 2 7.88e-09 G TTGGCACCCTGCCA GCTGGTCTCT chr4:82796906-82797406 + 52 9.05e-09 GCATTTGCAG CTGGCACCATGCCA AAAAAGCCCT chrX:81411454-81411954 + 63 9.05e-09 TTTTCATTTT CTGGCACCATGCCA AATATTTAAA chr13:44810009-44810509 + 45 9.05e-09 CTGTCTTTCC CTGGCACCATGCCA ACTGCTGTTA chr7:98555274-98555774 - 53 9.05e-09 CTACTGTTTG CTGGCACCATGCCA GGTCCAGAGG chr9:106035743-106036243 - 67 9.05e-09 AGAAAGGAAG CTGGCACCATGCCA ACTCTGAGCA chr1:213600814-213601314 - 59 9.05e-09 AACCCTGAAT CTGGCACCATGCCA GGGTGGCAGG chr1:164755652-164756152 - 58 9.82e-09 TCTTAAAACC CTGGCACCCTGCCA GGGGAGCTCC chr2:165824993-165825493 - 61 1.16e-08 AACCTTGAGT TTGGCACTGTGCCA AGCCACAATC chr5:41747187-41747687 + 47 1.16e-08 tgagtatggg ttggcactgtgcca agtgttagat chr12:120646970-12064747 - 56 1.16e-08 TGCAAAGGGC TTGGCACTGTGCCA AGCATCTAGA chr2:69462743-69463243 - 38 1.16e-08 AGATAAATAA TTGGCACTGTGCCA AGGTTTGGTT chr15:58755919-58756419 - 23 1.16e-08 TGGCTATATT TTGGCACTGTGCCA AGGTTGAGCT chr5:105475334-105475834 - 56 1.16e-08 GAGGGCTTTC TTGGCACTGTGCCA AGCTGTGCTG chr18:56211402-56211902 - 51 1.16e-08 CTTTAGGAAT TTGGCACTGTGCCA TATGTCCAGA chr10:121169344-12116984 + 46 1.16e-08 cactccatgc ttggcactgtgcca agtgtttttc chr12:65624481-65624981 + 46 1.55e-08 TTTTCACTTT TTGGCACTTTGCCA AGTTTTAGTT chr9:87815973-87816473 - 62 1.55e-08 ATGTGTGCTC TTGGCACTTTGCCA AAAATCAGTT chr8:99802083-99802583 - 37 1.55e-08 ACTTGCCCTC TTGGCACTTTGCCA AGAGGGTGAC chr18:45755939-45756439 + 50 2.03e-08 CAGAGAAAAG TTGGCACAGTGCCA GGAAACCTGG chr3:99868283-99868783 - 36 2.03e-08 GATGAAGCAG TTGGCACAGTGCCA AACCTATAGC chr19:57642377-57642877 + 34 2.03e-08 ATGAGTGTTG TTGGCAGCTTGCCA AGAAGGACTG chr5:86030695-86031195 + 61 2.03e-08 ATATTTTTTT CTggcactgtgcca gggacttacc chr2:63064165-63064665 - 31 2.03e-08 TACCTTGTGT CTGGCACTGTGCCA AGGCCTAAGA chr14:95291739-95292239 + 60 2.03e-08 gactgtgttc ctggcactgtgcca agggttgacg chr7:104884060-104884560 + 54 2.03e-08 GGCCTTTGTT TTGGCAGCTTGCCA AGCATGTCCT chr13:98049996-98050496 + 55 2.03e-08 CTACTGCATG CTGGCACTGTGCCA GGTCCTGGGA chr1:20846656-20847156 - 36 2.03e-08 TATTTTGTGC CTGGCACTGTGCCA AGTTCTTATA chr2:188449959-188450459 + 18 2.03e-08 TGCTATATTT CTGGCACTGTGCCA GGTCATTTAG chr6:145502388-145502888 - 27 2.03e-08 TTGAGCAAGG CTGGCACTGTGCCA GGTTTTAATA chr12:29957779-29958279 + 41 2.03e-08 tgtaaaatgg ttggcacagtgcca gaagcatagt chr12:74108680-74109180 + 31 2.03e-08 GCTAAAATTT CTGGCACTGTGCCA AATGGCTAAA chr12:19068054-19068554 + 75 2.03e-08 CTTTTTCCTT TTGGCAGCTTGCCA GCTGTAACTA chr14:59595043-59595543 + 43 2.03e-08 TTTCTGGCTG TTGGCACAGTGCCA AGTGACCCTT chr9:68482586-68483086 - 39 2.03e-08 ATACCAAGAG TTGGCACAGTGCCA GGCACTTGTG chr12:65327036-65327536 + 34 3.03e-08 CATGAGGGAC TTGGCACTATGCCA GGATGCTGAA chr8:17495811-17496311 + 31 3.03e-08 CAATACAAAT CTGGCACTTTGCCA AAGTTATTAC chr7:42226439-42226939 - 52 3.03e-08 GATGTCTGAT TTGGCACATTGCCA TCTTTATAGC chr1:47469325-47469825 + 30 3.03e-08 TAGTCTGTTT CTGGCACTTTGCCA GGTACTAGGT chr4:80788789-80789289 + 3 3.03e-08 CT TTGGCACATTGCCA AGTCACTTGA chr3:107112297-107112797 - 68 3.03e-08 CTAGATTATT TTGGCACATTGCCA AACATAATGT chr4:121229923-121230423 - 58 3.03e-08 AATCATTTAG TTGGCACATTGCCA GTTTCTGCTC chr11:123235007-12323550 + 54 3.03e-08 CGATCTGGGC CTGGCAGCGTGCCA AGTGCTCTTG chr7:103307765-103308265 + 38 3.03e-08 TGCTTTTTCT TTGGCACTATGCCA ATTTACATAT chr3:63467354-63467854 + 41 3.03e-08 tgtaaagcac ttggcacattgcca gatacaaaca chr22:27911256-27911756 + 63 3.03e-08 agAAATACAA CTGGCACTTTGCCA ACTAAAGCTG chr2:180953474-180953974 + 59 3.03e-08 ataatattat ttggcacattgcca agctaattat chr16:51151253-51151753 + 15 3.03e-08 TGAAAGGCGA TTGGCACCGGGCCA GCGCTATTCA chr12:121404675-12140517 - 48 3.92e-08 AGCTCTCTTT CTGGCACAGTGCCA GGATTTTCAA chr10:48384517-48385017 - 57 3.92e-08 ATTCCTGGAC TTGGCACCTGGCCA ACTATGAAAC chr17:2264028-2264528 - 44 3.92e-08 AAGTCCTCCT TTGGCTCCTTGCCA AGTTAGACAA chr1:90557624-90558124 + 51 3.92e-08 CTAACAGTCT CTGGCACAGTGCCA AATAGCTGTA chr7:112202702-112203202 + 22 3.92e-08 CACCTCAGTT CTGGCAGCTTGCCA GGTAGCGTTT chr11:7168299-7168799 - 63 3.92e-08 AGATTAATGT CTGGCAGCTTGCCA ATTTTTGTCT chr8:120419626-120420126 + 79 3.92e-08 TGAAGGTTTT TTGGCAGCATGCCA TAAATAGC chr13:67224144-67224644 + 49 3.92e-08 TACTGCGGGA TTGGCACCTGGCCA GCACAAGCGA chr3:196039301-196039801 - 55 3.92e-08 CAAACTTGTT TTGGCACCTGGCCA AAAACAAGTT chr5:155125654-155126154 - 35 3.92e-08 AGAAATTATC TTGGCTCCTTGCCA GAAAACAAAC chr8:92072369-92072869 - 45 3.92e-08 CTATAGGAAT TTGGCAGCATGCCA GTTGTTTTCA chr13:102697899-10269839 + 21 3.92e-08 ctgaaagaat ctggcacagtgcca ggtgctcaga chr13:39577790-39578290 + 37 3.92e-08 CAAGCATGTC CTGGCAGCTTGCCA GAAAAGACAC chr4:76198313-76198813 + 40 3.92e-08 AAAACTGTCC TTGGCAGCATGCCA GAGTCATAAC chr1:214660126-214660626 - 65 3.92e-08 TATTTTGTTG TTGGCAGCATGCCA AAGTTAAATC chr7:113968669-113969169 - 52 3.92e-08 AAGAGTCTGA CTGGCAGCTTGCCA AAACTTGGCA chr10:87586167-87586667 + 49 4.79e-08 cctaggtaat ttggcagcctgcca aatCCTACTT chr5:54249597-54250097 + 55 4.79e-08 CACACAGCAA TTGGCAGCCTGCCA GGAGAAAAAC chr9:70830579-70831079 + 43 4.79e-08 tgcaaagtac ctggcactatgcca agctcatagc chr5:10288450-10288950 + 39 4.79e-08 AAGCAGCCAC CTGGCACCGGGCCA AGCCCTCTTA chr5:16406575-16407075 + 43 4.79e-08 GGCTGAAAAT CTGGCACTATGCCA ACTCTGTGGC chr11:110479730-11048023 - 58 4.79e-08 AAGCAGTCTC TTGGCACAATGCCA AGTCAGACTG chr7:41825842-41826342 + 73 4.79e-08 TGTATTTAGT TTGGCAGCCTGCCA AGTAAAGTTC chrX:79140691-79141191 + 30 4.79e-08 aacacaatgc ctggcacattgcca actctcaggt chr4:105637365-105637865 - 39 4.79e-08 GCTCCAGTCC TTGGCACAATGCCA GGGACACAGG chr2:213261155-213261655 + 44 4.79e-08 ATTTTCTTGA TTGGCACAATGCCA AAATTTTCAT chr3:25144357-25144857 - 51 4.79e-08 TGTTAAGCAC CTGGCACTATGCCA ACTACCCAGG chr3:177611244-177611744 + 61 4.79e-08 TTAAGCCAGC TTGGCAGCCTGCCA GAGAAGGGCA chr3:151200531-151201031 + 57 4.79e-08 tggtttgtat ctggcactatgcca aatactttac chr1:78620121-78620621 - 76 5.82e-08 AAAAACTCAG CTGGCAGCATGCCA ACTGCCACTA chr2:178484585-178485085 - 69 5.82e-08 TATCACAGAC TTGGCTCCATGCCA AAGCTGACGA chr4:83238778-83239278 + 52 5.82e-08 gtctccacca TTggcacactgcca agtatcttgc chr14:69716056-69716556 + 37 5.82e-08 CAAAAGATAG CTGGCAGCATGCCA GGATTCATGT chr3:188348575-188349075 - 54 5.82e-08 CCCAAGAATG CTGGCAGCATGCCA GGCATTGTCA chr1:110176197-110176697 + 62 5.82e-08 TGCTTCTGCC TTGGCTCCATGCCA GATGTGTGGC chr10:6115754-6116254 - 59 5.82e-08 ATTTTCACCT TTGGCACACTGCCA AGATGATACT chr10:92839064-92839564 + 20 5.82e-08 GTAGATGTGC CTGGCTCCTTGCCA GCTCCTTCCG chr6:80132934-80133434 - 35 6.45e-08 AGTTCAAGTG CTGGCACAATGCCA ACAGGGATGT chr5:109468665-109469165 - 49 6.45e-08 CATGACAACG TTGGCTCCCTGCCA AGAACCACAG chrX:44946692-44947192 + 33 6.45e-08 CTCATGGTAT CTGGCACAATGCCA ACTTTCTTTT chr9:85960753-85961253 - 30 6.45e-08 CTCCTCCTAC TTGGCTCCCTGCCA GACTTAAGCA chr2:207726160-207726660 + 57 6.45e-08 CAGCTAGAGA TTGGCACCTAGCCA GAAACTGGTT chr1:168903384-168903884 + 44 6.45e-08 CTGTTTTCTT CTGGCACAATGCCA GAAAATAAAC chr2:70870664-70871164 + 67 6.45e-08 GGCCTAATCT CTGGCAGCCTGCCA AGATGTAGGA chr1:45875937-45876437 + 39 7.01e-08 atacattaca ttggcagtgtgcca agaatggttt chr17:21040159-21040659 + 66 7.01e-08 GGGCTCCTTG CTGGCACACTGCCA ACTGGCACTG chr3:182533375-182533875 - 21 7.01e-08 GAATGGCATG TTGGCAGTGTGCCA GGAACTGTAC chr18:31197744-31198244 - 8 7.01e-08 TACGTTTCAG TTGGCAGTGTGCCA AATATAC chr13:75879623-75880123 - 37 7.01e-08 TGTCTTACAA CTGGCTCCATGCCA GAAAAATATG chr15:44028923-44029423 + 53 7.71e-08 CAGTTCCATT TTGGCACCAAGCCA AAAAAGTCCC chr5:96343032-96343532 + 48 7.71e-08 TCTCACAATA CTGGCACCTAGCCA AAATAAATTC chr12:104387148-10438764 - 47 7.71e-08 ATGAAATAAT TTGGCAGTTTGCCA GCTACCCAGG chr4:174423027-174423527 + 67 7.71e-08 AATTTCCGAT TTGGCAGTTTGCCA GCTCTTTGAA chr5:10601228-10601728 - 29 8.42e-08 CTGGGAGGAG TTGGCACCCAGCCA GGTTGAGCCT chr17:13888002-13888502 + 42 8.42e-08 gcacatgggc ttggcactgggcca agtttttctc chr5:154223275-154223775 + 48 8.42e-08 acatttattt ttggctctgtgcca gaaagcacca chr3:77837544-77838044 + 60 8.42e-08 AGATAATTTT TTGGCTCTGTGCCA AAAATCTTCA chr6:25578478-25578978 + 48 8.42e-08 CAAAAGACCA TTGGCTCTGTGCCA AAACTTCAGA chr21:16420004-16420504 + 69 9.91e-08 GCACATGATT TTGGCACTTGGCCA AAATCAACTT chr6:118660214-118660714 + 12 9.91e-08 GCTGGGGGAG TTGGCAGATTGCCA GATAAGGGGC chr2:232473341-232473841 + 35 9.91e-08 gttctggcac ttggcacttggcca aactcctttc chr2:205197713-205198213 + 33 9.91e-08 GCTGCCCTTG TTGGCAGTATGCCA GGAAGTTACA chr5:124948389-124948889 - 76 9.91e-08 AAATTTTCCA TTGGCAGCGGGCCA ATGCCATAAT chr6:9257122-9257622 + 78 9.91e-08 AAATTATTAT TTGGCAGATTGCCA AATACGAAT chr10:51124778-51125278 + 49 9.91e-08 TTTTAAAATA TTGGCACTTggcca agcatggtgg chr20:2484992-2485492 + 81 9.91e-08 TTTTAGGATT CTGGCACCAAGCCA AAACAA chr5:68221469-68221969 + 10 9.91e-08 CTTTTTTGT TTGGCTCTTTGCCA AAATGCCTAT chr10:61974516-61975016 + 45 1.13e-07 TGACTAGTGC TTGGCTGCTTGCCA AGCGGTCTAA chr7:83547438-83547938 + 39 1.13e-07 CCTTAGGAAA TTGGCTGCTTGCCA AAACCTCTTG chr1:83065914-83066414 - 58 1.13e-07 TACCATGTTC CTGGCACTGGGCCA AATAACCATA chr11:3052119-3052619 - 36 1.13e-07 AATGGGGCCC CTGGCTCTGTGCCA GGCAGCTTTT chr12:45912704-45913204 - 56 1.13e-07 GCACTTATTA CTGGCTCTGTGCCA AGACTTTTAT chr2:32825175-32825675 - 43 1.13e-07 GAACACAATG TTGGCACAGGGCCA AGAGATGGCG chr3:50708533-50709033 - 38 1.13e-07 CCAGCCAGGT TTGGCTCAGTGCCA GGAGGCACTC chr5:105840731-105841231 - 41 1.13e-07 CAATGGCAAT TTGGCTGCTTGCCA ATTTACTCGG chr4:81786028-81786528 - 62 1.13e-07 TTCATTCTTT TTGGCTCAGTGCCA CCGGGACAAT chr2:43318681-43319181 - 52 1.13e-07 TGAGTTTTTC TTGGCTCAGTGCCA TTATTCTTTG chr7:127532184-127532684 - 36 1.13e-07 GCATGAGCCC CTGGCACCCAGCCA AGTTGTTATC chr5:121503430-121503930 - 35 1.13e-07 TTAAACTCTG TTGGCAGCTGGCCA AGTTTCAGAT chr9:92606958-92607458 - 70 1.13e-07 TCCGCAGTAA CTGGCACTGGGCCA ATTGGATATT chr1:85316242-85316742 - 56 1.13e-07 TGGACTGAAA TTGGCAGTCTGCCA GGATCCCCTG chr7:121561627-121562127 - 70 1.13e-07 GCTCTGAATT CTGGCAGAGTGCCA GGCTTTTGAC chr19:28341908-28342408 + 33 1.13e-07 CTTGGGTGTC CTGGCTCTGTGCCA AGTTTTCTTT chr13:40318326-40318826 - 59 1.13e-07 TTCTTGCTGG CTGGCAGAGTGCCA AGTCCTACAG chr5:110054175-110054675 + 64 1.39e-07 TCCTGATGTT TTGGCATCTTGCCA ACAGCCTCAG chr6:143264395-143264895 + 52 1.39e-07 CAGTTGGAAA TTGGCACTGAGCCA GAATCTCACA chr10:125768253-12576875 + 27 1.39e-07 TCCTGGATAT TTGGCATCTTGCCA ACAGAATAGA chr12:29350027-29350527 - 40 1.39e-07 TATTTACTAT CTGGCTCTTTGCCA AAAATGTTTG chr5:170755633-170756133 + 29 1.39e-07 GTTTGGCCAA TTGGCATCTTGCCA AGAAAAGCCT chr6:12861562-12862062 + 35 1.39e-07 AACCAAAAAC TTGGCTCTATGCCA GAATAGCTCA chr8:93448064-93448564 - 36 1.39e-07 CTTCTTTTTT TTGGCTCATTGCCA AGATTTGTAA chr3:53949496-53949996 - 40 1.39e-07 GAGAATTGCC TTGGCATCTTGCCA AAAACCAACT chr2:104050586-104051086 + 83 1.39e-07 AAGGTTTTGT TTGGCATCTTGCCA AAGA chr1:235657694-235658194 - 32 1.39e-07 GTGGCAAAGT TTGGCTCATTGCCA AAGTAAAGTA chr7:156691704-156692204 + 64 1.39e-07 ATAATTTAAA TTGGCTCATTGCCA ATTGTTTTAT chr2:205270648-205271148 + 51 1.39e-07 TTGTCCAGAA TTGGCTCATTGCCA ATCCTGGCCT chr14:102377608-10237810 + 80 1.39e-07 TATATGAATA TTGGCTCATTGCCA GAATATG chrX:149010191-149010691 + 61 1.60e-07 TCATTTATTT CTGGCACAGGGCCA ACCTTCCTGA chr8:97942202-97942702 - 47 1.60e-07 TGTCTAGTCT TTGGCACTTAGCCA AAAAAGAGAA chr5:125198472-125198972 - 54 1.89e-07 CAGAGATTGG TTGGCTGCCTGCCA AAAGTTCAGT chr10:18607476-18607976 - 53 1.89e-07 GCCTGTATTC TTGGCCCCATGCCA ATGCTCCAGA chr7:20514344-20514844 - 37 1.89e-07 AGCTCTCCAG CTGGCTCATTGCCA ACTCTCTGCC chr1:153880950-153881450 - 39 1.89e-07 TGACTGAGTG TTGGCATCATGCCA GGGGCTGCAA chr6:128367394-128367894 + 59 1.89e-07 GAATCAAGTG TTGGCACAAGGCCA ATACTACAAT chr5:73031903-73032403 + 32 1.89e-07 GAGTTGTCAA CTGGCACTGAGCCA GGCACGCAAA chr7:123351831-123352331 + 55 1.89e-07 ACAGTGCAGT TTGGCATCATGCCA AATATGCAAA chr1:67441126-67441626 + 71 1.89e-07 ACTCAGTCCC TTGGCTGCCTGCCA GGAAAAATGC chr11:124861662-12486216 + 27 1.89e-07 GGCCGATATG CTGGCACTAGGCCA AGAAAGTTAG chr10:101545819-10154631 - 45 1.89e-07 TCTTACTGAA TTGGCTGCCTGCCA GATCTGTCCA chr4:24076785-24077285 + 24 1.89e-07 cctccttttt ttggctcaatgcca aaaaaaagtt chr8:117461292-117461792 + 62 1.89e-07 cctgcatgat ctggctctatgcca aaacccttcc chr9:127277730-127278230 - 42 1.89e-07 TTGTGGATGT CTGGCACTGAGCCA AGTACTGCTG chr12:45268724-45269224 - 9 1.89e-07 CATTAGAGAG CTGGCCCCTTGCCA ATGGGTGG chr6:27392604-27393104 - 21 1.89e-07 GTTAAGTAAT TTGGCACAAGGCCA AGTAATAAAT chr9:70747342-70747842 - 19 1.89e-07 CAGTGGTTTG CTGGCCCCTTGCCA TAGAAATGCC chr13:51541761-51542261 + 50 1.89e-07 gattacccag ctggcacatggcca ggcgaagatt chr10:44326429-44326929 + 55 1.89e-07 ttttgtcccc ttggctgcctgcca aatttctaaa chr16:84819448-84819948 + 34 1.89e-07 tgggaagcgc ttggcaccgcgcca ggcgcatagt chr1:80054149-80054649 - 48 2.12e-07 ACAGATAATA TTGGCTCCGAGCCA AGAATGAGCT chr6:150409604-150410104 + 42 2.12e-07 AAGTGCTGGC TTGGCATCCTGCCA AGTGTCATCT chr5:136622638-136623138 + 32 2.12e-07 catggggctc ttggcatcctgcca agaacagctt chr9:113247599-113248099 + 40 2.12e-07 TAGAAACAAG TTGGCACATAGCCA ACTTCAGGTA chr10:121497501-12149800 - 39 2.12e-07 ATGAATGGAC CTGGCTGCATGCCA ATAAAATTTA chr3:107969904-107970404 - 46 2.12e-07 AACCCAAATC TTGGCACATAGCCA AATCAAATAT chr1:173527180-173527680 - 8 2.12e-07 AGCTGCTCAC TTGGCTCACTGCCA AATGAGG chr11:86592873-86593373 + 21 2.12e-07 GACTGTGGCC TTGGCTCACTGCCA GGAAAATGAC chr10:21724692-21725192 - 52 2.33e-07 CACTGTCTTT TTGGCAGCAAGCCA GCTCTACTAA chr10:126208885-12620938 + 39 2.33e-07 GTTGGGAATC TTGGCAGCAAGCCA AAATCCTATC chr1:168112853-168113353 - 59 2.33e-07 CCTGGGTAAG CTGGCTGCCTGCCA GGAAGCCTCC chr6:134035946-134036446 - 37 2.33e-07 ATATAATTAC CTGGCTGCCTGCCA AAAAAAGAAA chr11:26715116-26715616 + 44 2.33e-07 GGTGTTATCA TTGgcactcagcca attactaaat chr11:111796956-11179745 - 41 2.33e-07 ATTCTGTTTG TTGGCAGCAAGCCA GTTGAATAGC chr21:34543880-34544380 + 26 2.54e-07 gctgccttac ttggcaacttgcca gaattcttgc chr9:14209288-14209788 - 14 2.54e-07 ATGGACTGTG CTGGCCCCCTGCCA AAACCTTTAA chr13:112849458-11284995 + 51 2.54e-07 ttgttgagtt ttggctgtgtgcca gggattcagt chr21:26140261-26140761 + 41 2.54e-07 TAGGATTTTC TTGGCACAAAGCCA AGTGTCAGGG chr2:19673446-19673946 + 61 2.54e-07 aaacagctgg ctggcactaagcca agatttgaac chr7:32937569-32938069 - 46 2.54e-07 GGACAAAGTC CTGGCACCTCGCCA AGTCTCTGAT chr4:186216706-186217206 + 2 2.54e-07 a ttggcacaaagcca agtgtttagt chr9:128072389-128072889 + 45 2.54e-07 AGAGAAACCG TTGGCAGCCAGCCA GGGAAATTTT chr13:98507150-98507650 - 38 2.74e-07 GTGTGAAGCG TTGGCCCTGTGCCA GGAGCCCGCA chr7:93629229-93629729 + 55 2.74e-07 gttcttggat ctgGCACTCAGCCA AGAAGAGCAT chr7:112572660-112573160 + 32 2.96e-07 CCTGACAATA TTGGCAACATGCCA AGGTACATAG chr2:58240518-58241018 - 35 2.96e-07 AAACCTTATT TTGGCCCTTTGCCA AGTCGTATGT chr9:2602724-2603224 - 25 2.96e-07 TCCCTCATTC TTGGCATTTTGCCA AAGTATAATT chr11:49995580-49996080 + 25 2.96e-07 aggcacattg ttggccctttgcca aaacacttta chr11:72414141-72414641 - 33 2.96e-07 GACAGGTTTC CTGGCAGCCAGCCA GGAGGCCTGC chr12:43579212-43579712 - 14 2.96e-07 ATGTTATGCT CTGGCACAAAGCCA GAATGTTTTT chr4:72314748-72315248 - 57 2.96e-07 TGCTCAGAAA TTGGCTGAGTGCCA AGCTATGCTA chr6:3039281-3039781 + 18 2.96e-07 GGCCCATTTT CTGGCTGTGTGCCA TGGCTCATGC chr3:55518343-55518843 + 20 2.96e-07 CTCTAGGAGT TTGGCATTTTGCCA AGCTTCCTTG chrX:140360226-140360726 + 61 2.96e-07 GGTTAGCAAG TTGGCTGAGTGCCA AGTAGCAGGT chr1:22470926-22471426 + 56 2.96e-07 ggaaagtctt ctggcagccagcca gctggcctat chr10:69758048-69758548 + 32 3.25e-07 CTGCTGGCTG CTGGCACACAGCCA AGTTCAACTA chr2:58042453-58042953 - 52 3.25e-07 AAGGACTTTC TTGGCTGTATGCCA ACTTGTAGGT chr3:189324605-189325105 + 41 3.25e-07 TGAATGCTCA TTGGCTCTTGGCCA ACAATTATAC chr8:38497232-38497732 + 53 3.25e-07 ggagggtgag ttggcagtgagcca agatcatgtc chr5:42620743-42621243 + 50 3.25e-07 AGGATTAATA TTGGCCCAGTGCCA AAATGTGATT chr3:156171780-156172280 + 65 3.60e-07 TTTATATTTC TTGGCATTATGCCA AGAAAAATCT chr1:185721507-185722007 + 40 3.60e-07 TTTGAATTAA TTGGCATTATGCCA AATTTTTGTT chr5:32217724-32218224 - 73 3.60e-07 TCTTTCCATT TTGGCTGCTGGCCA AATACTCATT chr5:124206454-124206954 + 76 3.60e-07 acttgaacat ctggcaacatgcca acactagagc chr6:138310240-138310740 + 56 3.60e-07 tatttactct ctggccctttgcca aaaacatttg chr10:27347361-27347861 - 68 3.60e-07 TTCAAGGCAA TTGGCCCATTGCCA AAAGGTTTTA chr8:41447400-41447900 + 54 3.60e-07 tgtcgagcac ttggcatcgggcca ggcgctgtgt chr10:62081489-62081989 + 34 4.00e-07 GGAGAAAGAG TTGGCAGGTTGCCA GATTACTTAC chr1:179293400-179293900 - 13 4.00e-07 CAGGCTGGCC CTGGCAACCTGCCA AGGAAGCTTC chr8:60807677-60808177 + 37 4.00e-07 CACTGTGGGT TTGGCAGAAGGCCA AATTTGGGGT chr1:174963483-174963983 - 6 4.00e-07 TTTACAAAAA CTGGCAGTGAGCCA GATTT chr12:79826465-79826965 - 39 4.00e-07 AATCATTTTA TTGGCATCTGGCCA ACAATTGTCT chr5:111697183-111697683 - 48 4.00e-07 GAATGAAGTA CTGGCAACCTGCCA GAGAAATGTT chrX:40175812-40176312 + 30 4.00e-07 TTCAAGGGTT CTGGCAGATGGCCA AGTTTGTGTC chr7:113412366-113412866 + 41 4.00e-07 aataaaatat ttggctcatggcca agtttcaaaa chr5:77168823-77169323 - 50 4.45e-07 GTGACAGGAG CTGGCACTGCGCCA ACTCTCAGGG chr9:98504837-98505337 + 31 4.45e-07 aaattagatt ttggcccaatgcca aaaaacccca chr10:15813405-15813905 - 15 4.45e-07 TAGTATGTGC CTGGCATTATGCCA GGTGTTGTGA chr4:88456759-88457259 + 4 4.45e-07 CCT TTGGCCGCCTGCCA AGTCACTCTC chr6:85600684-85601184 - 49 4.96e-07 TTGAAAAATC TTGGCAATTTGCCA AGTTATCTCA chr3:169657316-169657816 - 45 4.96e-07 AGACTGGGTT CTGGCTTCTTGCCA ATTCTGTACA chr6:111430919-111431419 - 49 4.96e-07 ATGGATAATC TTGGCACGTGGCCA AAAACTCATG chr3:158260385-158260885 + 17 4.96e-07 ttcaagtact ctggctctgagcca agcatagcat chr17:46742706-46743206 - 76 4.96e-07 GAGGAGGAAA TTGGCTCAGAGCCA AGAGTAAGAA chr16:50323411-50323911 + 60 4.96e-07 ACGGATAATC TTGGCACGTGGCCA AAAACTCATG chr6:143745593-143746093 - 80 5.41e-07 AGCAGCC TTGGCTTCCTGCCA AGAATCAAAA chr2:138572276-138572776 - 50 5.41e-07 TCAAGTATAC TTGGCTCTAAGCCA AGTATACTTA chrX:71081803-71082303 + 2 5.41e-07 G CTGGCTCTTAGCCA AGACCATTTT chr18:70286349-70286849 + 4 5.89e-07 TCA TTGGCAGACAGCCA AGAAGATATC chr13:38008574-38009074 - 55 5.89e-07 ACAAAGGCAG CTGGCACATCGCCA ATATTGTATT chr5:115594239-115594739 + 75 5.89e-07 AGTTCTGTCA TTGGCTCTCAGCCA AGAAATACAA chr5:146213416-146213916 - 31 6.32e-07 TCCTACACCT TTGGCCCCAAGCCA AAAAACACTA chr13:46119977-46120477 - 64 6.32e-07 AGGAGGCTTC CTGGCTTCCTGCCA ACTCCCTTCC chr19:57599607-57600107 - 17 6.32e-07 CTGAGCCTCA TTGGCTCCACGCCA AGAACCTGGC chr1:67367600-67368100 + 30 6.32e-07 TAAAGGGTTG CTGGCTCCTCGCCA GGTCTCTGCA chr9:111731021-111731521 + 59 6.32e-07 cattcacaac ttggcaactggcca aaagcaagag chr1:221284046-221284546 + 33 6.68e-07 ttgtgggtag ttggcaaaatgcca aggaataagt chr8:60751569-60752069 + 47 6.68e-07 GAACTTGAAG TTGGCAAAATGCCA AGAAATTGAC chr1:206416441-206416941 + 39 6.68e-07 CCAGGGTTTT TTGGCACCCTGCCC AGATTTCCTG chr2:150588013-150588513 + 83 6.68e-07 TCCCTACAAA TTGGCTGTTGGCCA AGTG chr10:110011665-11001216 - 29 7.11e-07 TGAGACTGTC TTGGCATTTGGCCA AGAGAACTGA chr4:19791660-19792160 - 49 7.11e-07 ATAGCATTTT TTGGCATTTGGCCA AAACTGGGGA chr2:98037903-98038403 - 29 7.11e-07 AGTAGGAGAG CTGGCATCAAGCCA ACTTCTTTTC chrX:74360896-74361396 + 46 7.11e-07 GCAGGAAACA TTGGCTACATGCCA ATTTTTATTT chr5:59583748-59584248 - 38 7.11e-07 CGATCAGAAG TTGGCAACAGGCCA GTGCTAAGGA chr8:60619566-60620066 - 55 7.99e-07 GGAGTCAGAC TTGGCATTAGGCCA AATAAATAGC chr2:168434072-168434572 + 37 7.99e-07 CAAGACAAGC TTGGCATATGGCCA AGTTCCCTGG chr3:105527966-105528466 + 74 7.99e-07 TTGCTGTGAG CTGGCTACATGCCA AAAAATATAC chr7:78164445-78164945 + 26 7.99e-07 CTCCCCTTTT TTGGCATTAGGCCA AGAATTAGAC chr3:43704667-43705167 + 41 8.52e-07 CTGTCTAAAT TTGGCTGGTTGCCA ACAAAATTTT chr7:127803504-127804004 - 56 8.52e-07 GAAGGTATTT TTGGCTGGTTGCCA AAATTGGGAG chr5:116970253-116970753 + 23 8.52e-07 CTGGTTAAAA CTGGCAACCGGCCa agagagatac chr3:18580220-18580720 - 54 8.52e-07 TACTCAGGAG TTGGCTGGTTGCCA GGTTTGTTAT chr10:118970613-11897111 - 62 8.52e-07 ATCCGGATTC TTGGCAGGTGGCCA AGCACAGTGA chr5:72921841-72922341 - 34 8.52e-07 ATAACTCCAT TTGGCTGGTTGCCA ACAAACACTT chr13:25584901-25585401 + 61 9.19e-07 TAGTTTGAAA TTGGCATGTTGCCA GAATCCTGCA chr13:74210589-74211089 - 71 9.19e-07 TGCCTGTGAG TTGGCAACCAGCCA GGATTAGGAG chr5:143355713-143356213 - 11 9.19e-07 TTACTGTAAA TGGGCACCATGCCA GTTGGCTTCA chr5:81736003-81736503 + 58 1.07e-06 AAGCACAAAA TTGGCGCTATGCCA AAAGCCCTGT chr18:70464637-70465137 + 54 1.07e-06 AATTCCGTTG CTGGCATCGCGCCA AGACAGTAGG chr3:197151469-197151969 + 83 1.21e-06 TATTAAGATA CTGGCATTCAgcca agtg chr7:152086491-152086991 + 4 1.21e-06 GTG CTGGCAGGTAGCCA AGAGTGAACC chr10:133359659-13336015 + 25 1.28e-06 GGGCCCTTTC TTGGCTTCCAGCCA AGTGTGGCTG chr14:77580906-77581406 - 50 1.41e-06 TTAATTTATA TTGGCACCAAGCCC AGATCTAATG chr5:115858000-115858500 - 49 1.49e-06 TAAAAATTTT TGGGCAGCATGCCA GATCACAAAA chr5:140295372-140295872 + 54 1.66e-06 CTAAAATGTG CTGGCAACACGCCA AAAGACTGGA chr8:37014318-37014818 + 54 1.75e-06 TACTGCATCC TTGGTACCTTGCCA GCTTTACGGC chr18:22493131-22493631 + 16 1.75e-06 tacacacaca caGGCACTTTGCCA AGGGGATAAG chr18:6370939-6371439 + 68 1.85e-06 actgacaaaa ctggcggcgggcca gatgtggcca chr6:27131806-27132306 - 38 2.08e-06 GGTTAGTGAT TTGGAACAGTGCCA AGTTGCAGCG chr11:95917109-95917609 + 42 2.08e-06 tagcattaac ttggcagctttcca aaataaactt chr6:24583681-24584181 - 38 2.08e-06 ATCATTATTT TTGTCACAGTGCCA ACTCATATTT chr17:29042457-29042957 - 83 2.22e-06 GAAC TTGGCACGATGCCC AGAATAAGAC chr7:13532299-13532799 + 41 2.46e-06 AAGACATTTT TTGGCCTTAGGCCA AAAAAGTGCT chr5:92641314-92641814 - 40 2.46e-06 TTTGTTTTCT TTGGCAGCCTTCCA TGACCTCCTA chr5:38780828-38781328 + 56 2.60e-06 ttggagtgat ttggccacaagcca aggaatgttg chr20:18428659-18429159 + 32 3.02e-06 AAAGTCTTCC TAGGCACTGAGCCA ACGCACCACA chr12:14257678-14258178 + 74 3.57e-06 TCACACAGCA CTGTCTCTGTGCCA TAATCCAGTC chr3:58463012-58463512 - 27 3.81e-06 CATAAAATAC CTGGCGCAGCGCCA AGCACATTGC chr5:37412987-37413487 - 35 4.03e-06 AAGGGAAAAA CTGGATGCTTGCCA AAGAGCTTCT chr5:132877864-132878364 + 21 4.03e-06 AAGTCACTTC TTGGCTACTTGCCC AGAAAAAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGGCACHDTGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:364361-364861 1.2e-09 50_[+1]_36 chr8:119087473-119087973 1.2e-09 25_[-1]_61 chr1:74964427-74964927 1.2e-09 19_[+1]_67 chr13:78802864-78803364 3e-09 32_[+1]_54 chrX:74514388-74514888 3e-09 51_[-1]_35 chr8:59664023-59664523 3e-09 29_[-1]_57 chr1:52502740-52503240 3.7e-09 53_[+1]_33 chr1:61808867-61809367 6.7e-09 52_[-1]_34 chr6:141486883-141487383 6.7e-09 48_[+1]_38 chr1:78334038-78334538 6.7e-09 32_[-1]_54 chr6:110207589-110208089 6.7e-09 53_[+1]_33 chr12:60947481-60947981 6.7e-09 36_[-1]_50 chr19:28473798-28474298 6.7e-09 14_[-1]_72 chr6:126889984-126890484 6.7e-09 61_[+1]_25 chr4:110678477-110678977 6.7e-09 36_[+1]_50 chr16:1271731-1272231 7.9e-09 1_[+1]_85 chr4:82796906-82797406 9.1e-09 51_[+1]_35 chrX:81411454-81411954 9.1e-09 62_[+1]_24 chr13:44810009-44810509 9.1e-09 44_[+1]_42 chr7:98555274-98555774 9.1e-09 52_[-1]_34 chr9:106035743-106036243 9.1e-09 66_[-1]_20 chr1:213600814-213601314 9.1e-09 58_[-1]_28 chr1:164755652-164756152 9.8e-09 57_[-1]_29 chr2:165824993-165825493 1.2e-08 60_[-1]_26 chr5:41747187-41747687 1.2e-08 46_[+1]_40 chr12:120646970-12064747 1.2e-08 55_[-1]_31 chr2:69462743-69463243 1.2e-08 37_[-1]_49 chr15:58755919-58756419 1.2e-08 22_[-1]_64 chr5:105475334-105475834 1.2e-08 55_[-1]_31 chr18:56211402-56211902 1.2e-08 50_[-1]_36 chr10:121169344-12116984 1.2e-08 45_[+1]_41 chr12:65624481-65624981 1.6e-08 45_[+1]_41 chr9:87815973-87816473 1.6e-08 61_[-1]_25 chr8:99802083-99802583 1.6e-08 36_[-1]_50 chr18:45755939-45756439 2e-08 49_[+1]_37 chr3:99868283-99868783 2e-08 35_[-1]_51 chr19:57642377-57642877 2e-08 33_[+1]_53 chr5:86030695-86031195 2e-08 60_[+1]_26 chr2:63064165-63064665 2e-08 30_[-1]_56 chr14:95291739-95292239 2e-08 59_[+1]_27 chr7:104884060-104884560 2e-08 53_[+1]_33 chr13:98049996-98050496 2e-08 54_[+1]_32 chr1:20846656-20847156 2e-08 35_[-1]_51 chr2:188449959-188450459 2e-08 17_[+1]_69 chr6:145502388-145502888 2e-08 26_[-1]_60 chr12:29957779-29958279 2e-08 40_[+1]_46 chr12:74108680-74109180 2e-08 30_[+1]_56 chr12:19068054-19068554 2e-08 74_[+1]_12 chr14:59595043-59595543 2e-08 42_[+1]_44 chr9:68482586-68483086 2e-08 38_[-1]_48 chr12:65327036-65327536 3e-08 33_[+1]_53 chr8:17495811-17496311 3e-08 30_[+1]_56 chr7:42226439-42226939 3e-08 51_[-1]_35 chr1:47469325-47469825 3e-08 29_[+1]_57 chr4:80788789-80789289 3e-08 2_[+1]_84 chr3:107112297-107112797 3e-08 67_[-1]_19 chr4:121229923-121230423 3e-08 57_[-1]_29 chr11:123235007-12323550 3e-08 53_[+1]_33 chr7:103307765-103308265 3e-08 37_[+1]_49 chr3:63467354-63467854 3e-08 40_[+1]_46 chr22:27911256-27911756 3e-08 62_[+1]_24 chr2:180953474-180953974 3e-08 58_[+1]_28 chr16:51151253-51151753 3e-08 14_[+1]_72 chr12:121404675-12140517 3.9e-08 47_[-1]_39 chr10:48384517-48385017 3.9e-08 56_[-1]_30 chr17:2264028-2264528 3.9e-08 43_[-1]_43 chr1:90557624-90558124 3.9e-08 50_[+1]_36 chr7:112202702-112203202 3.9e-08 21_[+1]_65 chr11:7168299-7168799 3.9e-08 62_[-1]_24 chr8:120419626-120420126 3.9e-08 78_[+1]_8 chr13:67224144-67224644 3.9e-08 48_[+1]_38 chr3:196039301-196039801 3.9e-08 54_[-1]_32 chr5:155125654-155126154 3.9e-08 34_[-1]_52 chr8:92072369-92072869 3.9e-08 44_[-1]_42 chr13:102697899-10269839 3.9e-08 20_[+1]_66 chr13:39577790-39578290 3.9e-08 36_[+1]_50 chr4:76198313-76198813 3.9e-08 39_[+1]_47 chr1:214660126-214660626 3.9e-08 64_[-1]_22 chr7:113968669-113969169 3.9e-08 51_[-1]_35 chr10:87586167-87586667 4.8e-08 48_[+1]_38 chr5:54249597-54250097 4.8e-08 54_[+1]_32 chr9:70830579-70831079 4.8e-08 42_[+1]_44 chr5:10288450-10288950 4.8e-08 38_[+1]_48 chr5:16406575-16407075 4.8e-08 42_[+1]_44 chr11:110479730-11048023 4.8e-08 57_[-1]_29 chr7:41825842-41826342 4.8e-08 72_[+1]_14 chrX:79140691-79141191 4.8e-08 29_[+1]_57 chr4:105637365-105637865 4.8e-08 38_[-1]_48 chr2:213261155-213261655 4.8e-08 43_[+1]_43 chr3:25144357-25144857 4.8e-08 50_[-1]_36 chr3:177611244-177611744 4.8e-08 60_[+1]_26 chr3:151200531-151201031 4.8e-08 56_[+1]_30 chr1:78620121-78620621 5.8e-08 75_[-1]_11 chr2:178484585-178485085 5.8e-08 68_[-1]_18 chr4:83238778-83239278 5.8e-08 51_[+1]_35 chr14:69716056-69716556 5.8e-08 36_[+1]_50 chr3:188348575-188349075 5.8e-08 53_[-1]_33 chr1:110176197-110176697 5.8e-08 61_[+1]_25 chr10:6115754-6116254 5.8e-08 58_[-1]_28 chr10:92839064-92839564 5.8e-08 19_[+1]_67 chr6:80132934-80133434 6.4e-08 34_[-1]_52 chr5:109468665-109469165 6.4e-08 48_[-1]_38 chrX:44946692-44947192 6.4e-08 32_[+1]_54 chr9:85960753-85961253 6.4e-08 29_[-1]_57 chr2:207726160-207726660 6.4e-08 56_[+1]_30 chr1:168903384-168903884 6.4e-08 43_[+1]_43 chr2:70870664-70871164 6.4e-08 66_[+1]_20 chr1:45875937-45876437 7e-08 38_[+1]_48 chr17:21040159-21040659 7e-08 65_[+1]_21 chr3:182533375-182533875 7e-08 20_[-1]_66 chr18:31197744-31198244 7e-08 7_[-1]_79 chr13:75879623-75880123 7e-08 36_[-1]_50 chr15:44028923-44029423 7.7e-08 52_[+1]_34 chr5:96343032-96343532 7.7e-08 47_[+1]_39 chr12:104387148-10438764 7.7e-08 46_[-1]_40 chr4:174423027-174423527 7.7e-08 66_[+1]_20 chr5:10601228-10601728 8.4e-08 28_[-1]_58 chr17:13888002-13888502 8.4e-08 41_[+1]_45 chr5:154223275-154223775 8.4e-08 47_[+1]_39 chr3:77837544-77838044 8.4e-08 59_[+1]_27 chr6:25578478-25578978 8.4e-08 47_[+1]_39 chr21:16420004-16420504 9.9e-08 68_[+1]_18 chr6:118660214-118660714 9.9e-08 11_[+1]_75 chr2:232473341-232473841 9.9e-08 34_[+1]_52 chr2:205197713-205198213 9.9e-08 32_[+1]_54 chr5:124948389-124948889 9.9e-08 75_[-1]_11 chr6:9257122-9257622 9.9e-08 77_[+1]_9 chr10:51124778-51125278 9.9e-08 48_[+1]_38 chr20:2484992-2485492 9.9e-08 80_[+1]_6 chr5:68221469-68221969 9.9e-08 9_[+1]_77 chr10:61974516-61975016 1.1e-07 44_[+1]_42 chr7:83547438-83547938 1.1e-07 38_[+1]_48 chr1:83065914-83066414 1.1e-07 57_[-1]_29 chr11:3052119-3052619 1.1e-07 35_[-1]_51 chr12:45912704-45913204 1.1e-07 55_[-1]_31 chr2:32825175-32825675 1.1e-07 42_[-1]_44 chr3:50708533-50709033 1.1e-07 37_[-1]_49 chr5:105840731-105841231 1.1e-07 40_[-1]_46 chr4:81786028-81786528 1.1e-07 61_[-1]_25 chr2:43318681-43319181 1.1e-07 51_[-1]_35 chr7:127532184-127532684 1.1e-07 35_[-1]_51 chr5:121503430-121503930 1.1e-07 34_[-1]_52 chr9:92606958-92607458 1.1e-07 69_[-1]_17 chr1:85316242-85316742 1.1e-07 55_[-1]_31 chr7:121561627-121562127 1.1e-07 69_[-1]_17 chr19:28341908-28342408 1.1e-07 32_[+1]_54 chr13:40318326-40318826 1.1e-07 58_[-1]_28 chr5:110054175-110054675 1.4e-07 63_[+1]_23 chr6:143264395-143264895 1.4e-07 51_[+1]_35 chr10:125768253-12576875 1.4e-07 26_[+1]_60 chr12:29350027-29350527 1.4e-07 39_[-1]_47 chr5:170755633-170756133 1.4e-07 28_[+1]_58 chr6:12861562-12862062 1.4e-07 34_[+1]_52 chr8:93448064-93448564 1.4e-07 35_[-1]_51 chr3:53949496-53949996 1.4e-07 39_[-1]_47 chr2:104050586-104051086 1.4e-07 82_[+1]_4 chr1:235657694-235658194 1.4e-07 31_[-1]_55 chr7:156691704-156692204 1.4e-07 63_[+1]_23 chr2:205270648-205271148 1.4e-07 50_[+1]_36 chr14:102377608-10237810 1.4e-07 79_[+1]_7 chrX:149010191-149010691 1.6e-07 60_[+1]_26 chr8:97942202-97942702 1.6e-07 46_[-1]_40 chr5:125198472-125198972 1.9e-07 53_[-1]_33 chr10:18607476-18607976 1.9e-07 52_[-1]_34 chr7:20514344-20514844 1.9e-07 36_[-1]_50 chr1:153880950-153881450 1.9e-07 38_[-1]_48 chr6:128367394-128367894 1.9e-07 58_[+1]_28 chr5:73031903-73032403 1.9e-07 31_[+1]_55 chr7:123351831-123352331 1.9e-07 54_[+1]_32 chr1:67441126-67441626 1.9e-07 70_[+1]_16 chr11:124861662-12486216 1.9e-07 26_[+1]_60 chr10:101545819-10154631 1.9e-07 44_[-1]_42 chr4:24076785-24077285 1.9e-07 23_[+1]_63 chr8:117461292-117461792 1.9e-07 61_[+1]_25 chr9:127277730-127278230 1.9e-07 41_[-1]_45 chr12:45268724-45269224 1.9e-07 8_[-1]_78 chr6:27392604-27393104 1.9e-07 20_[-1]_66 chr9:70747342-70747842 1.9e-07 18_[-1]_68 chr13:51541761-51542261 1.9e-07 49_[+1]_37 chr10:44326429-44326929 1.9e-07 54_[+1]_32 chr16:84819448-84819948 1.9e-07 33_[+1]_53 chr1:80054149-80054649 2.1e-07 47_[-1]_39 chr6:150409604-150410104 2.1e-07 41_[+1]_45 chr5:136622638-136623138 2.1e-07 31_[+1]_55 chr9:113247599-113248099 2.1e-07 39_[+1]_47 chr10:121497501-12149800 2.1e-07 38_[-1]_48 chr3:107969904-107970404 2.1e-07 45_[-1]_41 chr1:173527180-173527680 2.1e-07 7_[-1]_79 chr11:86592873-86593373 2.1e-07 20_[+1]_66 chr10:21724692-21725192 2.3e-07 51_[-1]_35 chr10:126208885-12620938 2.3e-07 38_[+1]_48 chr1:168112853-168113353 2.3e-07 58_[-1]_28 chr6:134035946-134036446 2.3e-07 36_[-1]_50 chr11:26715116-26715616 2.3e-07 43_[+1]_43 chr11:111796956-11179745 2.3e-07 40_[-1]_46 chr21:34543880-34544380 2.5e-07 25_[+1]_61 chr9:14209288-14209788 2.5e-07 13_[-1]_73 chr13:112849458-11284995 2.5e-07 50_[+1]_36 chr21:26140261-26140761 2.5e-07 40_[+1]_46 chr2:19673446-19673946 2.5e-07 60_[+1]_26 chr7:32937569-32938069 2.5e-07 45_[-1]_41 chr4:186216706-186217206 2.5e-07 1_[+1]_85 chr9:128072389-128072889 2.5e-07 44_[+1]_42 chr13:98507150-98507650 2.7e-07 37_[-1]_49 chr7:93629229-93629729 2.7e-07 54_[+1]_32 chr7:112572660-112573160 3e-07 31_[+1]_55 chr2:58240518-58241018 3e-07 34_[-1]_52 chr9:2602724-2603224 3e-07 24_[-1]_62 chr11:49995580-49996080 3e-07 24_[+1]_62 chr11:72414141-72414641 3e-07 32_[-1]_54 chr12:43579212-43579712 3e-07 13_[-1]_73 chr4:72314748-72315248 3e-07 56_[-1]_30 chr6:3039281-3039781 3e-07 17_[+1]_69 chr3:55518343-55518843 3e-07 19_[+1]_67 chrX:140360226-140360726 3e-07 60_[+1]_26 chr1:22470926-22471426 3e-07 55_[+1]_31 chr10:69758048-69758548 3.2e-07 31_[+1]_55 chr2:58042453-58042953 3.2e-07 51_[-1]_35 chr3:189324605-189325105 3.2e-07 40_[+1]_46 chr8:38497232-38497732 3.2e-07 52_[+1]_34 chr5:42620743-42621243 3.2e-07 49_[+1]_37 chr3:156171780-156172280 3.6e-07 64_[+1]_22 chr1:185721507-185722007 3.6e-07 39_[+1]_47 chr5:32217724-32218224 3.6e-07 72_[-1]_14 chr5:124206454-124206954 3.6e-07 75_[+1]_11 chr6:138310240-138310740 3.6e-07 55_[+1]_31 chr10:27347361-27347861 3.6e-07 67_[-1]_19 chr8:41447400-41447900 3.6e-07 53_[+1]_33 chr10:62081489-62081989 4e-07 33_[+1]_53 chr1:179293400-179293900 4e-07 12_[-1]_74 chr8:60807677-60808177 4e-07 36_[+1]_50 chr1:174963483-174963983 4e-07 5_[-1]_81 chr12:79826465-79826965 4e-07 38_[-1]_48 chr5:111697183-111697683 4e-07 47_[-1]_39 chrX:40175812-40176312 4e-07 29_[+1]_57 chr7:113412366-113412866 4e-07 40_[+1]_46 chr5:77168823-77169323 4.5e-07 49_[-1]_37 chr9:98504837-98505337 4.5e-07 30_[+1]_56 chr10:15813405-15813905 4.5e-07 14_[-1]_72 chr4:88456759-88457259 4.5e-07 3_[+1]_83 chr6:85600684-85601184 5e-07 48_[-1]_38 chr3:169657316-169657816 5e-07 44_[-1]_42 chr6:111430919-111431419 5e-07 48_[-1]_38 chr3:158260385-158260885 5e-07 16_[+1]_70 chr17:46742706-46743206 5e-07 75_[-1]_11 chr16:50323411-50323911 5e-07 59_[+1]_27 chr6:143745593-143746093 5.4e-07 79_[-1]_7 chr2:138572276-138572776 5.4e-07 49_[-1]_37 chrX:71081803-71082303 5.4e-07 1_[+1]_85 chr18:70286349-70286849 5.9e-07 3_[+1]_83 chr13:38008574-38009074 5.9e-07 54_[-1]_32 chr5:115594239-115594739 5.9e-07 74_[+1]_12 chr5:146213416-146213916 6.3e-07 30_[-1]_56 chr13:46119977-46120477 6.3e-07 63_[-1]_23 chr19:57599607-57600107 6.3e-07 16_[-1]_70 chr1:67367600-67368100 6.3e-07 29_[+1]_57 chr9:111731021-111731521 6.3e-07 58_[+1]_28 chr1:221284046-221284546 6.7e-07 32_[+1]_54 chr8:60751569-60752069 6.7e-07 46_[+1]_40 chr1:206416441-206416941 6.7e-07 38_[+1]_48 chr2:150588013-150588513 6.7e-07 82_[+1]_4 chr10:110011665-11001216 7.1e-07 28_[-1]_58 chr4:19791660-19792160 7.1e-07 48_[-1]_38 chr2:98037903-98038403 7.1e-07 28_[-1]_58 chrX:74360896-74361396 7.1e-07 45_[+1]_41 chr5:59583748-59584248 7.1e-07 37_[-1]_49 chr8:60619566-60620066 8e-07 54_[-1]_32 chr2:168434072-168434572 8e-07 36_[+1]_50 chr3:105527966-105528466 8e-07 73_[+1]_13 chr7:78164445-78164945 8e-07 25_[+1]_61 chr3:43704667-43705167 8.5e-07 40_[+1]_46 chr7:127803504-127804004 8.5e-07 55_[-1]_31 chr5:116970253-116970753 8.5e-07 22_[+1]_64 chr3:18580220-18580720 8.5e-07 53_[-1]_33 chr10:118970613-11897111 8.5e-07 61_[-1]_25 chr5:72921841-72922341 8.5e-07 33_[-1]_53 chr13:25584901-25585401 9.2e-07 60_[+1]_26 chr13:74210589-74211089 9.2e-07 70_[-1]_16 chr5:143355713-143356213 9.2e-07 10_[-1]_76 chr5:81736003-81736503 1.1e-06 57_[+1]_29 chr18:70464637-70465137 1.1e-06 53_[+1]_33 chr3:197151469-197151969 1.2e-06 82_[+1]_4 chr7:152086491-152086991 1.2e-06 3_[+1]_83 chr10:133359659-13336015 1.3e-06 24_[+1]_62 chr14:77580906-77581406 1.4e-06 49_[-1]_37 chr5:115858000-115858500 1.5e-06 48_[-1]_38 chr5:140295372-140295872 1.7e-06 53_[+1]_33 chr8:37014318-37014818 1.8e-06 53_[+1]_33 chr18:22493131-22493631 1.8e-06 15_[+1]_71 chr18:6370939-6371439 1.9e-06 67_[+1]_19 chr6:27131806-27132306 2.1e-06 37_[-1]_49 chr11:95917109-95917609 2.1e-06 41_[+1]_45 chr6:24583681-24584181 2.1e-06 37_[-1]_49 chr17:29042457-29042957 2.2e-06 82_[-1]_4 chr7:13532299-13532799 2.5e-06 40_[+1]_46 chr5:92641314-92641814 2.5e-06 39_[-1]_47 chr5:38780828-38781328 2.6e-06 55_[+1]_31 chr20:18428659-18429159 3e-06 31_[+1]_55 chr12:14257678-14258178 3.6e-06 73_[+1]_13 chr3:58463012-58463512 3.8e-06 26_[-1]_60 chr5:37412987-37413487 4e-06 34_[-1]_52 chr5:132877864-132878364 4e-06 20_[+1]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGGCACHDTGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTGGCACHDTGCCA width=14 seqs=302 chr8:364361-364861 ( 51) TTGGCACCGTGCCA 1 chr8:119087473-119087973 ( 26) TTGGCACCGTGCCA 1 chr1:74964427-74964927 ( 20) TTGGCACCGTGCCA 1 chr13:78802864-78803364 ( 33) TTGGCACCTTGCCA 1 chrX:74514388-74514888 ( 52) TTGGCACCTTGCCA 1 chr8:59664023-59664523 ( 30) TTGGCACCTTGCCA 1 chr1:52502740-52503240 ( 54) CTGGCACCGTGCCA 1 chr1:61808867-61809367 ( 53) CTGGCACCTTGCCA 1 chr6:141486883-141487383 ( 49) CTGGCACCTTGCCA 1 chr1:78334038-78334538 ( 33) TTGGCACCATGCCA 1 chr6:110207589-110208089 ( 54) TTGGCACCATGCCA 1 chr12:60947481-60947981 ( 37) TTGGCACCATGCCA 1 chr19:28473798-28474298 ( 15) TTGGCACCATGCCA 1 chr6:126889984-126890484 ( 62) CTGGCACCTTGCCA 1 chr4:110678477-110678977 ( 37) TTGGCACCATGCCA 1 chr16:1271731-1272231 ( 2) TTGGCACCCTGCCA 1 chr4:82796906-82797406 ( 52) CTGGCACCATGCCA 1 chrX:81411454-81411954 ( 63) CTGGCACCATGCCA 1 chr13:44810009-44810509 ( 45) CTGGCACCATGCCA 1 chr7:98555274-98555774 ( 53) CTGGCACCATGCCA 1 chr9:106035743-106036243 ( 67) CTGGCACCATGCCA 1 chr1:213600814-213601314 ( 59) CTGGCACCATGCCA 1 chr1:164755652-164756152 ( 58) CTGGCACCCTGCCA 1 chr2:165824993-165825493 ( 61) TTGGCACTGTGCCA 1 chr5:41747187-41747687 ( 47) TTGGCACTGTGCCA 1 chr12:120646970-12064747 ( 56) TTGGCACTGTGCCA 1 chr2:69462743-69463243 ( 38) TTGGCACTGTGCCA 1 chr15:58755919-58756419 ( 23) TTGGCACTGTGCCA 1 chr5:105475334-105475834 ( 56) TTGGCACTGTGCCA 1 chr18:56211402-56211902 ( 51) TTGGCACTGTGCCA 1 chr10:121169344-12116984 ( 46) TTGGCACTGTGCCA 1 chr12:65624481-65624981 ( 46) TTGGCACTTTGCCA 1 chr9:87815973-87816473 ( 62) TTGGCACTTTGCCA 1 chr8:99802083-99802583 ( 37) TTGGCACTTTGCCA 1 chr18:45755939-45756439 ( 50) TTGGCACAGTGCCA 1 chr3:99868283-99868783 ( 36) TTGGCACAGTGCCA 1 chr19:57642377-57642877 ( 34) TTGGCAGCTTGCCA 1 chr5:86030695-86031195 ( 61) CTGGCACTGTGCCA 1 chr2:63064165-63064665 ( 31) CTGGCACTGTGCCA 1 chr14:95291739-95292239 ( 60) CTGGCACTGTGCCA 1 chr7:104884060-104884560 ( 54) TTGGCAGCTTGCCA 1 chr13:98049996-98050496 ( 55) CTGGCACTGTGCCA 1 chr1:20846656-20847156 ( 36) CTGGCACTGTGCCA 1 chr2:188449959-188450459 ( 18) CTGGCACTGTGCCA 1 chr6:145502388-145502888 ( 27) CTGGCACTGTGCCA 1 chr12:29957779-29958279 ( 41) TTGGCACAGTGCCA 1 chr12:74108680-74109180 ( 31) CTGGCACTGTGCCA 1 chr12:19068054-19068554 ( 75) TTGGCAGCTTGCCA 1 chr14:59595043-59595543 ( 43) TTGGCACAGTGCCA 1 chr9:68482586-68483086 ( 39) TTGGCACAGTGCCA 1 chr12:65327036-65327536 ( 34) TTGGCACTATGCCA 1 chr8:17495811-17496311 ( 31) CTGGCACTTTGCCA 1 chr7:42226439-42226939 ( 52) TTGGCACATTGCCA 1 chr1:47469325-47469825 ( 30) CTGGCACTTTGCCA 1 chr4:80788789-80789289 ( 3) TTGGCACATTGCCA 1 chr3:107112297-107112797 ( 68) TTGGCACATTGCCA 1 chr4:121229923-121230423 ( 58) TTGGCACATTGCCA 1 chr11:123235007-12323550 ( 54) CTGGCAGCGTGCCA 1 chr7:103307765-103308265 ( 38) TTGGCACTATGCCA 1 chr3:63467354-63467854 ( 41) TTGGCACATTGCCA 1 chr22:27911256-27911756 ( 63) CTGGCACTTTGCCA 1 chr2:180953474-180953974 ( 59) TTGGCACATTGCCA 1 chr16:51151253-51151753 ( 15) TTGGCACCGGGCCA 1 chr12:121404675-12140517 ( 48) CTGGCACAGTGCCA 1 chr10:48384517-48385017 ( 57) TTGGCACCTGGCCA 1 chr17:2264028-2264528 ( 44) TTGGCTCCTTGCCA 1 chr1:90557624-90558124 ( 51) CTGGCACAGTGCCA 1 chr7:112202702-112203202 ( 22) CTGGCAGCTTGCCA 1 chr11:7168299-7168799 ( 63) CTGGCAGCTTGCCA 1 chr8:120419626-120420126 ( 79) TTGGCAGCATGCCA 1 chr13:67224144-67224644 ( 49) TTGGCACCTGGCCA 1 chr3:196039301-196039801 ( 55) TTGGCACCTGGCCA 1 chr5:155125654-155126154 ( 35) TTGGCTCCTTGCCA 1 chr8:92072369-92072869 ( 45) TTGGCAGCATGCCA 1 chr13:102697899-10269839 ( 21) CTGGCACAGTGCCA 1 chr13:39577790-39578290 ( 37) CTGGCAGCTTGCCA 1 chr4:76198313-76198813 ( 40) TTGGCAGCATGCCA 1 chr1:214660126-214660626 ( 65) TTGGCAGCATGCCA 1 chr7:113968669-113969169 ( 52) CTGGCAGCTTGCCA 1 chr10:87586167-87586667 ( 49) TTGGCAGCCTGCCA 1 chr5:54249597-54250097 ( 55) TTGGCAGCCTGCCA 1 chr9:70830579-70831079 ( 43) CTGGCACTATGCCA 1 chr5:10288450-10288950 ( 39) CTGGCACCGGGCCA 1 chr5:16406575-16407075 ( 43) CTGGCACTATGCCA 1 chr11:110479730-11048023 ( 58) TTGGCACAATGCCA 1 chr7:41825842-41826342 ( 73) TTGGCAGCCTGCCA 1 chrX:79140691-79141191 ( 30) CTGGCACATTGCCA 1 chr4:105637365-105637865 ( 39) TTGGCACAATGCCA 1 chr2:213261155-213261655 ( 44) TTGGCACAATGCCA 1 chr3:25144357-25144857 ( 51) CTGGCACTATGCCA 1 chr3:177611244-177611744 ( 61) TTGGCAGCCTGCCA 1 chr3:151200531-151201031 ( 57) CTGGCACTATGCCA 1 chr1:78620121-78620621 ( 76) CTGGCAGCATGCCA 1 chr2:178484585-178485085 ( 69) TTGGCTCCATGCCA 1 chr4:83238778-83239278 ( 52) TTGGCACACTGCCA 1 chr14:69716056-69716556 ( 37) CTGGCAGCATGCCA 1 chr3:188348575-188349075 ( 54) CTGGCAGCATGCCA 1 chr1:110176197-110176697 ( 62) TTGGCTCCATGCCA 1 chr10:6115754-6116254 ( 59) TTGGCACACTGCCA 1 chr10:92839064-92839564 ( 20) CTGGCTCCTTGCCA 1 chr6:80132934-80133434 ( 35) CTGGCACAATGCCA 1 chr5:109468665-109469165 ( 49) TTGGCTCCCTGCCA 1 chrX:44946692-44947192 ( 33) CTGGCACAATGCCA 1 chr9:85960753-85961253 ( 30) TTGGCTCCCTGCCA 1 chr2:207726160-207726660 ( 57) TTGGCACCTAGCCA 1 chr1:168903384-168903884 ( 44) CTGGCACAATGCCA 1 chr2:70870664-70871164 ( 67) CTGGCAGCCTGCCA 1 chr1:45875937-45876437 ( 39) TTGGCAGTGTGCCA 1 chr17:21040159-21040659 ( 66) CTGGCACACTGCCA 1 chr3:182533375-182533875 ( 21) TTGGCAGTGTGCCA 1 chr18:31197744-31198244 ( 8) TTGGCAGTGTGCCA 1 chr13:75879623-75880123 ( 37) CTGGCTCCATGCCA 1 chr15:44028923-44029423 ( 53) TTGGCACCAAGCCA 1 chr5:96343032-96343532 ( 48) CTGGCACCTAGCCA 1 chr12:104387148-10438764 ( 47) TTGGCAGTTTGCCA 1 chr4:174423027-174423527 ( 67) TTGGCAGTTTGCCA 1 chr5:10601228-10601728 ( 29) TTGGCACCCAGCCA 1 chr17:13888002-13888502 ( 42) TTGGCACTGGGCCA 1 chr5:154223275-154223775 ( 48) TTGGCTCTGTGCCA 1 chr3:77837544-77838044 ( 60) TTGGCTCTGTGCCA 1 chr6:25578478-25578978 ( 48) TTGGCTCTGTGCCA 1 chr21:16420004-16420504 ( 69) TTGGCACTTGGCCA 1 chr6:118660214-118660714 ( 12) TTGGCAGATTGCCA 1 chr2:232473341-232473841 ( 35) TTGGCACTTGGCCA 1 chr2:205197713-205198213 ( 33) TTGGCAGTATGCCA 1 chr5:124948389-124948889 ( 76) TTGGCAGCGGGCCA 1 chr6:9257122-9257622 ( 78) TTGGCAGATTGCCA 1 chr10:51124778-51125278 ( 49) TTGGCACTTGGCCA 1 chr20:2484992-2485492 ( 81) CTGGCACCAAGCCA 1 chr5:68221469-68221969 ( 10) TTGGCTCTTTGCCA 1 chr10:61974516-61975016 ( 45) TTGGCTGCTTGCCA 1 chr7:83547438-83547938 ( 39) TTGGCTGCTTGCCA 1 chr1:83065914-83066414 ( 58) CTGGCACTGGGCCA 1 chr11:3052119-3052619 ( 36) CTGGCTCTGTGCCA 1 chr12:45912704-45913204 ( 56) CTGGCTCTGTGCCA 1 chr2:32825175-32825675 ( 43) TTGGCACAGGGCCA 1 chr3:50708533-50709033 ( 38) TTGGCTCAGTGCCA 1 chr5:105840731-105841231 ( 41) TTGGCTGCTTGCCA 1 chr4:81786028-81786528 ( 62) TTGGCTCAGTGCCA 1 chr2:43318681-43319181 ( 52) TTGGCTCAGTGCCA 1 chr7:127532184-127532684 ( 36) CTGGCACCCAGCCA 1 chr5:121503430-121503930 ( 35) TTGGCAGCTGGCCA 1 chr9:92606958-92607458 ( 70) CTGGCACTGGGCCA 1 chr1:85316242-85316742 ( 56) TTGGCAGTCTGCCA 1 chr7:121561627-121562127 ( 70) CTGGCAGAGTGCCA 1 chr19:28341908-28342408 ( 33) CTGGCTCTGTGCCA 1 chr13:40318326-40318826 ( 59) CTGGCAGAGTGCCA 1 chr5:110054175-110054675 ( 64) TTGGCATCTTGCCA 1 chr6:143264395-143264895 ( 52) TTGGCACTGAGCCA 1 chr10:125768253-12576875 ( 27) TTGGCATCTTGCCA 1 chr12:29350027-29350527 ( 40) CTGGCTCTTTGCCA 1 chr5:170755633-170756133 ( 29) TTGGCATCTTGCCA 1 chr6:12861562-12862062 ( 35) TTGGCTCTATGCCA 1 chr8:93448064-93448564 ( 36) TTGGCTCATTGCCA 1 chr3:53949496-53949996 ( 40) TTGGCATCTTGCCA 1 chr2:104050586-104051086 ( 83) TTGGCATCTTGCCA 1 chr1:235657694-235658194 ( 32) TTGGCTCATTGCCA 1 chr7:156691704-156692204 ( 64) TTGGCTCATTGCCA 1 chr2:205270648-205271148 ( 51) TTGGCTCATTGCCA 1 chr14:102377608-10237810 ( 80) TTGGCTCATTGCCA 1 chrX:149010191-149010691 ( 61) CTGGCACAGGGCCA 1 chr8:97942202-97942702 ( 47) TTGGCACTTAGCCA 1 chr5:125198472-125198972 ( 54) TTGGCTGCCTGCCA 1 chr10:18607476-18607976 ( 53) TTGGCCCCATGCCA 1 chr7:20514344-20514844 ( 37) CTGGCTCATTGCCA 1 chr1:153880950-153881450 ( 39) TTGGCATCATGCCA 1 chr6:128367394-128367894 ( 59) TTGGCACAAGGCCA 1 chr5:73031903-73032403 ( 32) CTGGCACTGAGCCA 1 chr7:123351831-123352331 ( 55) TTGGCATCATGCCA 1 chr1:67441126-67441626 ( 71) TTGGCTGCCTGCCA 1 chr11:124861662-12486216 ( 27) CTGGCACTAGGCCA 1 chr10:101545819-10154631 ( 45) TTGGCTGCCTGCCA 1 chr4:24076785-24077285 ( 24) TTGGCTCAATGCCA 1 chr8:117461292-117461792 ( 62) CTGGCTCTATGCCA 1 chr9:127277730-127278230 ( 42) CTGGCACTGAGCCA 1 chr12:45268724-45269224 ( 9) CTGGCCCCTTGCCA 1 chr6:27392604-27393104 ( 21) TTGGCACAAGGCCA 1 chr9:70747342-70747842 ( 19) CTGGCCCCTTGCCA 1 chr13:51541761-51542261 ( 50) CTGGCACATGGCCA 1 chr10:44326429-44326929 ( 55) TTGGCTGCCTGCCA 1 chr16:84819448-84819948 ( 34) TTGGCACCGCGCCA 1 chr1:80054149-80054649 ( 48) TTGGCTCCGAGCCA 1 chr6:150409604-150410104 ( 42) TTGGCATCCTGCCA 1 chr5:136622638-136623138 ( 32) TTGGCATCCTGCCA 1 chr9:113247599-113248099 ( 40) TTGGCACATAGCCA 1 chr10:121497501-12149800 ( 39) CTGGCTGCATGCCA 1 chr3:107969904-107970404 ( 46) TTGGCACATAGCCA 1 chr1:173527180-173527680 ( 8) TTGGCTCACTGCCA 1 chr11:86592873-86593373 ( 21) TTGGCTCACTGCCA 1 chr10:21724692-21725192 ( 52) TTGGCAGCAAGCCA 1 chr10:126208885-12620938 ( 39) TTGGCAGCAAGCCA 1 chr1:168112853-168113353 ( 59) CTGGCTGCCTGCCA 1 chr6:134035946-134036446 ( 37) CTGGCTGCCTGCCA 1 chr11:26715116-26715616 ( 44) TTGGCACTCAGCCA 1 chr11:111796956-11179745 ( 41) TTGGCAGCAAGCCA 1 chr21:34543880-34544380 ( 26) TTGGCAACTTGCCA 1 chr9:14209288-14209788 ( 14) CTGGCCCCCTGCCA 1 chr13:112849458-11284995 ( 51) TTGGCTGTGTGCCA 1 chr21:26140261-26140761 ( 41) TTGGCACAAAGCCA 1 chr2:19673446-19673946 ( 61) CTGGCACTAAGCCA 1 chr7:32937569-32938069 ( 46) CTGGCACCTCGCCA 1 chr4:186216706-186217206 ( 2) TTGGCACAAAGCCA 1 chr9:128072389-128072889 ( 45) TTGGCAGCCAGCCA 1 chr13:98507150-98507650 ( 38) TTGGCCCTGTGCCA 1 chr7:93629229-93629729 ( 55) CTGGCACTCAGCCA 1 chr7:112572660-112573160 ( 32) TTGGCAACATGCCA 1 chr2:58240518-58241018 ( 35) TTGGCCCTTTGCCA 1 chr9:2602724-2603224 ( 25) TTGGCATTTTGCCA 1 chr11:49995580-49996080 ( 25) TTGGCCCTTTGCCA 1 chr11:72414141-72414641 ( 33) CTGGCAGCCAGCCA 1 chr12:43579212-43579712 ( 14) CTGGCACAAAGCCA 1 chr4:72314748-72315248 ( 57) TTGGCTGAGTGCCA 1 chr6:3039281-3039781 ( 18) CTGGCTGTGTGCCA 1 chr3:55518343-55518843 ( 20) TTGGCATTTTGCCA 1 chrX:140360226-140360726 ( 61) TTGGCTGAGTGCCA 1 chr1:22470926-22471426 ( 56) CTGGCAGCCAGCCA 1 chr10:69758048-69758548 ( 32) CTGGCACACAGCCA 1 chr2:58042453-58042953 ( 52) TTGGCTGTATGCCA 1 chr3:189324605-189325105 ( 41) TTGGCTCTTGGCCA 1 chr8:38497232-38497732 ( 53) TTGGCAGTGAGCCA 1 chr5:42620743-42621243 ( 50) TTGGCCCAGTGCCA 1 chr3:156171780-156172280 ( 65) TTGGCATTATGCCA 1 chr1:185721507-185722007 ( 40) TTGGCATTATGCCA 1 chr5:32217724-32218224 ( 73) TTGGCTGCTGGCCA 1 chr5:124206454-124206954 ( 76) CTGGCAACATGCCA 1 chr6:138310240-138310740 ( 56) CTGGCCCTTTGCCA 1 chr10:27347361-27347861 ( 68) TTGGCCCATTGCCA 1 chr8:41447400-41447900 ( 54) TTGGCATCGGGCCA 1 chr10:62081489-62081989 ( 34) TTGGCAGGTTGCCA 1 chr1:179293400-179293900 ( 13) CTGGCAACCTGCCA 1 chr8:60807677-60808177 ( 37) TTGGCAGAAGGCCA 1 chr1:174963483-174963983 ( 6) CTGGCAGTGAGCCA 1 chr12:79826465-79826965 ( 39) TTGGCATCTGGCCA 1 chr5:111697183-111697683 ( 48) CTGGCAACCTGCCA 1 chrX:40175812-40176312 ( 30) CTGGCAGATGGCCA 1 chr7:113412366-113412866 ( 41) TTGGCTCATGGCCA 1 chr5:77168823-77169323 ( 50) CTGGCACTGCGCCA 1 chr9:98504837-98505337 ( 31) TTGGCCCAATGCCA 1 chr10:15813405-15813905 ( 15) CTGGCATTATGCCA 1 chr4:88456759-88457259 ( 4) TTGGCCGCCTGCCA 1 chr6:85600684-85601184 ( 49) TTGGCAATTTGCCA 1 chr3:169657316-169657816 ( 45) CTGGCTTCTTGCCA 1 chr6:111430919-111431419 ( 49) TTGGCACGTGGCCA 1 chr3:158260385-158260885 ( 17) CTGGCTCTGAGCCA 1 chr17:46742706-46743206 ( 76) TTGGCTCAGAGCCA 1 chr16:50323411-50323911 ( 60) TTGGCACGTGGCCA 1 chr6:143745593-143746093 ( 80) TTGGCTTCCTGCCA 1 chr2:138572276-138572776 ( 50) TTGGCTCTAAGCCA 1 chrX:71081803-71082303 ( 2) CTGGCTCTTAGCCA 1 chr18:70286349-70286849 ( 4) TTGGCAGACAGCCA 1 chr13:38008574-38009074 ( 55) CTGGCACATCGCCA 1 chr5:115594239-115594739 ( 75) TTGGCTCTCAGCCA 1 chr5:146213416-146213916 ( 31) TTGGCCCCAAGCCA 1 chr13:46119977-46120477 ( 64) CTGGCTTCCTGCCA 1 chr19:57599607-57600107 ( 17) TTGGCTCCACGCCA 1 chr1:67367600-67368100 ( 30) CTGGCTCCTCGCCA 1 chr9:111731021-111731521 ( 59) TTGGCAACTGGCCA 1 chr1:221284046-221284546 ( 33) TTGGCAAAATGCCA 1 chr8:60751569-60752069 ( 47) TTGGCAAAATGCCA 1 chr1:206416441-206416941 ( 39) TTGGCACCCTGCCC 1 chr2:150588013-150588513 ( 83) TTGGCTGTTGGCCA 1 chr10:110011665-11001216 ( 29) TTGGCATTTGGCCA 1 chr4:19791660-19792160 ( 49) TTGGCATTTGGCCA 1 chr2:98037903-98038403 ( 29) CTGGCATCAAGCCA 1 chrX:74360896-74361396 ( 46) TTGGCTACATGCCA 1 chr5:59583748-59584248 ( 38) TTGGCAACAGGCCA 1 chr8:60619566-60620066 ( 55) TTGGCATTAGGCCA 1 chr2:168434072-168434572 ( 37) TTGGCATATGGCCA 1 chr3:105527966-105528466 ( 74) CTGGCTACATGCCA 1 chr7:78164445-78164945 ( 26) TTGGCATTAGGCCA 1 chr3:43704667-43705167 ( 41) TTGGCTGGTTGCCA 1 chr7:127803504-127804004 ( 56) TTGGCTGGTTGCCA 1 chr5:116970253-116970753 ( 23) CTGGCAACCGGCCA 1 chr3:18580220-18580720 ( 54) TTGGCTGGTTGCCA 1 chr10:118970613-11897111 ( 62) TTGGCAGGTGGCCA 1 chr5:72921841-72922341 ( 34) TTGGCTGGTTGCCA 1 chr13:25584901-25585401 ( 61) TTGGCATGTTGCCA 1 chr13:74210589-74211089 ( 71) TTGGCAACCAGCCA 1 chr5:143355713-143356213 ( 11) TGGGCACCATGCCA 1 chr5:81736003-81736503 ( 58) TTGGCGCTATGCCA 1 chr18:70464637-70465137 ( 54) CTGGCATCGCGCCA 1 chr3:197151469-197151969 ( 83) CTGGCATTCAGCCA 1 chr7:152086491-152086991 ( 4) CTGGCAGGTAGCCA 1 chr10:133359659-13336015 ( 25) TTGGCTTCCAGCCA 1 chr14:77580906-77581406 ( 50) TTGGCACCAAGCCC 1 chr5:115858000-115858500 ( 49) TGGGCAGCATGCCA 1 chr5:140295372-140295872 ( 54) CTGGCAACACGCCA 1 chr8:37014318-37014818 ( 54) TTGGTACCTTGCCA 1 chr18:22493131-22493631 ( 16) CAGGCACTTTGCCA 1 chr18:6370939-6371439 ( 68) CTGGCGGCGGGCCA 1 chr6:27131806-27132306 ( 38) TTGGAACAGTGCCA 1 chr11:95917109-95917609 ( 42) TTGGCAGCTTTCCA 1 chr6:24583681-24584181 ( 38) TTGTCACAGTGCCA 1 chr17:29042457-29042957 ( 83) TTGGCACGATGCCC 1 chr7:13532299-13532799 ( 41) TTGGCCTTAGGCCA 1 chr5:92641314-92641814 ( 40) TTGGCAGCCTTCCA 1 chr5:38780828-38781328 ( 56) TTGGCCACAAGCCA 1 chr20:18428659-18429159 ( 32) TAGGCACTGAGCCA 1 chr12:14257678-14258178 ( 74) CTGTCTCTGTGCCA 1 chr3:58463012-58463512 ( 27) CTGGCGCAGCGCCA 1 chr5:37412987-37413487 ( 35) CTGGATGCTTGCCA 1 chr5:132877864-132878364 ( 21) TTGGCTACTTGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGGCACHDTGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 43326 bayes= 8.05056 E= 3.2e-975 -1488 80 -1488 112 -551 -1488 -490 171 -1488 -1488 234 -1488 -1488 -1488 233 -551 -551 232 -1488 -651 123 -199 -432 -38 -242 160 31 -160 -42 114 -244 0 -19 -41 33 16 -108 -273 -58 120 -1488 -1488 233 -551 -1488 234 -1488 -1488 -1488 234 -1488 -1488 171 -390 -1488 -1488 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGGCACHDTGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 302 E= 3.2e-975 0.000000 0.344371 0.000000 0.655629 0.006623 0.000000 0.006623 0.986755 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.993377 0.006623 0.006623 0.990066 0.000000 0.003311 0.708609 0.049669 0.009934 0.231788 0.056291 0.599338 0.245033 0.099338 0.225166 0.437086 0.036424 0.301325 0.264901 0.149007 0.248344 0.337748 0.142384 0.029801 0.132450 0.695364 0.000000 0.000000 0.993377 0.006623 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.986755 0.013245 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGGCACHDTGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]TGGC[AT][CG][CTA][TAG]TGCCA -------------------------------------------------------------------------------- Time 345.56 secs. ******************************************************************************** ******************************************************************************** MOTIF SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 width = 43 sites = 8 llr = 253 E-value = 3.2e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3:111:1343::1331:311:::61::11:::5:4:4:::: pos.-specific C 46515641::453a:4484654313164311614114134633 probability G 64191:4988:15:94416145888136688446393944468 matrix T ::1:331:1:313::::::::::1:1::1:::5:1::::3:1: bits 2.3 * 2.1 * 1.9 * * * * * 1.6 * * ** * * * * * Relative 1.4 ** * * * ** * * * * * * * * * * Entropy 1.2 ** * *** ** ** *** * *** * * * * * (45.7 bits) 0.9 ** * *** ** ******** ****** * * * *** 0.7 ** * * *** ************* ******** * * **** 0.5 ************************* ******** ******** 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel GCCGCCCGGGACGCGCCCGCCGGGGACGGGGCTGAGAGACCGG consensus CGA TTG ACAC GG CAGCC C GCC GGCG C GGGCC sequence T T AA G CT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr1:179293400-179293900 + 45 5.16e-21 TGCGAGCACT GGCGCCGGGGACCCGCGCGCCCGGGAAGGGGCGGGGAGGTGGG CGGAGCCTGG chr6:139374548-139375048 - 15 1.84e-17 CGCAGCCTCT GCAGCACGTGCCGCGGGCGGCGGGGACGCGGCTCCGGGACCCG GTCCAGGGTG chr17:63842461-63842961 - 9 3.43e-15 CGCGGAGCCC GGAGTCCGGATCGCGGCACCGCGGGACGGGACGGAGCGATGTC GGGCCGAG chr9:133375848-133376348 - 15 6.03e-15 CTACGTGGCA GCCGCTGGAGCCGCAGCCGACGCGGAGCGAGGCCGGCCGCCGG GCACTTCCTG chr11:65919119-65919619 + 35 1.76e-14 CTTAACCGGC GGCGCTAGGACTCCGCGGGAAACGGCGGGGGCGGAGCGGGCGG CACCAGGACC chr1:146035506-146036006 - 12 2.04e-14 TTACTCTTTC CCTGACCGGGAATCGAACCCGGGCCGCGGCGGTGAGAGCGCCG AATCCTAACC chr18:50967693-50968193 - 37 2.72e-14 CGAGGGAGGT CCGCGCTCGGTGGCGCCCGCGCGGGACCTGGCTCTGGGCGCGC TTCCGGGCTC chr6:27583232-27583732 + 28 4.45e-14 GCTTCGTctc cccgtcggggaatcgaaccccggtctcccgcgtgacagacggg gacactcacc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:179293400-179293900 5.2e-21 44_[+2]_13 chr6:139374548-139375048 1.8e-17 14_[-2]_43 chr17:63842461-63842961 3.4e-15 8_[-2]_49 chr9:133375848-133376348 6e-15 14_[-2]_43 chr11:65919119-65919619 1.8e-14 34_[+2]_23 chr1:146035506-146036006 2e-14 11_[-2]_46 chr18:50967693-50968193 2.7e-14 36_[-2]_21 chr6:27583232-27583732 4.5e-14 27_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG width=43 seqs=8 chr1:179293400-179293900 ( 45) GGCGCCGGGGACCCGCGCGCCCGGGAAGGGGCGGGGAGGTGGG 1 chr6:139374548-139375048 ( 15) GCAGCACGTGCCGCGGGCGGCGGGGACGCGGCTCCGGGACCCG 1 chr17:63842461-63842961 ( 9) GGAGTCCGGATCGCGGCACCGCGGGACGGGACGGAGCGATGTC 1 chr9:133375848-133376348 ( 15) GCCGCTGGAGCCGCAGCCGACGCGGAGCGAGGCCGGCCGCCGG 1 chr11:65919119-65919619 ( 35) GGCGCTAGGACTCCGCGGGAAACGGCGGGGGCGGAGCGGGCGG 1 chr1:146035506-146036006 ( 12) CCTGACCGGGAATCGAACCCGGGCCGCGGCGGTGAGAGCGCCG 1 chr18:50967693-50968193 ( 37) CCGCGCTCGGTGGCGCCCGCGCGGGACCTGGCTCTGGGCGCGC 1 chr6:27583232-27583732 ( 28) CCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGACGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 28884 bayes= 10.9693 E= 3.2e-012 -965 92 166 -965 -965 166 92 -965 -27 134 -66 -127 -965 -66 214 -965 -127 134 -66 -27 -127 166 -965 -27 -127 92 92 -127 -965 -66 214 -965 -127 -965 192 -127 -27 -965 192 -965 31 92 -965 -27 -27 134 -66 -127 -965 34 134 -27 -965 233 -965 -965 -127 -965 214 -965 -27 92 92 -965 -27 92 92 -965 -127 192 -66 -965 -965 92 166 -965 -27 166 -66 -965 -127 134 92 -965 -127 92 134 -965 -965 34 192 -965 -965 -66 192 -127 -965 34 192 -965 105 -66 -66 -127 -127 166 34 -965 -965 92 166 -965 -965 34 166 -127 -127 -66 192 -965 -127 -66 192 -965 -965 166 92 -965 -965 -66 92 73 -965 92 166 -965 73 -66 34 -127 -965 -66 214 -965 31 92 34 -965 -965 -66 214 -965 31 34 92 -965 -965 92 92 -27 -965 166 92 -965 -965 34 166 -127 -965 34 192 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 8 E= 3.2e-012 0.000000 0.375000 0.625000 0.000000 0.000000 0.625000 0.375000 0.000000 0.250000 0.500000 0.125000 0.125000 0.000000 0.125000 0.875000 0.000000 0.125000 0.500000 0.125000 0.250000 0.125000 0.625000 0.000000 0.250000 0.125000 0.375000 0.375000 0.125000 0.000000 0.125000 0.875000 0.000000 0.125000 0.000000 0.750000 0.125000 0.250000 0.000000 0.750000 0.000000 0.375000 0.375000 0.000000 0.250000 0.250000 0.500000 0.125000 0.125000 0.000000 0.250000 0.500000 0.250000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.250000 0.375000 0.375000 0.000000 0.250000 0.375000 0.375000 0.000000 0.125000 0.750000 0.125000 0.000000 0.000000 0.375000 0.625000 0.000000 0.250000 0.625000 0.125000 0.000000 0.125000 0.500000 0.375000 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.125000 0.750000 0.125000 0.000000 0.250000 0.750000 0.000000 0.625000 0.125000 0.125000 0.125000 0.125000 0.625000 0.250000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 0.250000 0.625000 0.125000 0.125000 0.125000 0.750000 0.000000 0.125000 0.125000 0.750000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.125000 0.375000 0.500000 0.000000 0.375000 0.625000 0.000000 0.500000 0.125000 0.250000 0.125000 0.000000 0.125000 0.875000 0.000000 0.375000 0.375000 0.250000 0.000000 0.000000 0.125000 0.875000 0.000000 0.375000 0.250000 0.375000 0.000000 0.000000 0.375000 0.375000 0.250000 0.000000 0.625000 0.375000 0.000000 0.000000 0.250000 0.625000 0.125000 0.000000 0.250000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSMGYCSGGGHMBCGVVCSCSSGGGACSGGGSKSRGVGVBSGG MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CG][CA]G[CT][CT][CG]GG[GA][ACT][CA][GCT]CG[CGA][CGA]C[GC][CA][CG][GC][GC]G[GC]A[CG][GC][GC]GG[CG][TG][GC][AG]G[ACG]G[AGC][CGT][CG][GC][GC] -------------------------------------------------------------------------------- Time 627.30 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 width = 49 sites = 3 llr = 191 E-value = 2.5e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 Description -------------------------------------------------------------------------------- Simplified A aaaaa::aa:::aa:a:::a::aa3:3:::aaa:::aa:a::::aaa:: pos.-specific C ::::::a::a:a:::::::::::::::a:::::aa:::::a7:::::a: probability G ::::::::::::::a::aa:::::7a7:::::::::::a::3:a::::: matrix T :::::a::::a:::::a:::aa::::::aa:::::a::::::a:::::a bits 2.3 * * * * ** * * ** * * * * 2.1 * * * * ** * * ** * * * * 1.9 * * * * ** * * ** * * * * 1.6 ************************ * ************** ******* Relative 1.4 ************************ * ********************** Entropy 1.2 ************************************************* (91.8 bits) 0.9 ************************************************* 0.7 ************************************************* 0.5 ************************************************* 0.2 ************************************************* 0.0 ------------------------------------------------- Multilevel AAAAATCAACTCAAGATGGATTAAGGGCTTAAACCTAAGACCTGAAACT consensus A A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------- chr5:59303274-59303774 - 41 5.06e-29 CACCGTATAC AAAAATCAACTCAAGATGGATTAAGGGCTTAAACCTAAGACGTGAAACT ATGAAATTTT chr10:15409258-15409758 + 27 1.28e-28 tcaccttata aaaaatcaactcaagatggattaaaggcttaaacctaagacctgaaact ataaaaactc chr2:156781530-156782030 + 45 1.28e-28 caccttacac aaaaatcaactcaagatggattaaggacttaaacctaagacctgaaact ataaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:59303274-59303774 5.1e-29 40_[-3]_11 chr10:15409258-15409758 1.3e-28 26_[+3]_25 chr2:156781530-156782030 1.3e-28 44_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT width=49 seqs=3 chr5:59303274-59303774 ( 41) AAAAATCAACTCAAGATGGATTAAGGGCTTAAACCTAAGACGTGAAACT 1 chr10:15409258-15409758 ( 27) AAAAATCAACTCAAGATGGATTAAAGGCTTAAACCTAAGACCTGAAACT 1 chr2:156781530-156782030 ( 45) AAAAATCAACTCAAGATGGATTAAGGACTTAAACCTAAGACCTGAAACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 25896 bayes= 12.7342 E= 2.5e-008 172 -823 -823 -823 172 -823 -823 -823 172 -823 -823 -823 172 -823 -823 -823 172 -823 -823 -823 -823 -823 -823 172 -823 233 -823 -823 172 -823 -823 -823 172 -823 -823 -823 -823 233 -823 -823 -823 -823 -823 172 -823 233 -823 -823 172 -823 -823 -823 172 -823 -823 -823 -823 -823 233 -823 172 -823 -823 -823 -823 -823 -823 172 -823 -823 233 -823 -823 -823 233 -823 172 -823 -823 -823 -823 -823 -823 172 -823 -823 -823 172 172 -823 -823 -823 172 -823 -823 -823 14 -823 175 -823 -823 -823 233 -823 14 -823 175 -823 -823 233 -823 -823 -823 -823 -823 172 -823 -823 -823 172 172 -823 -823 -823 172 -823 -823 -823 172 -823 -823 -823 -823 233 -823 -823 -823 233 -823 -823 -823 -823 -823 172 172 -823 -823 -823 172 -823 -823 -823 -823 -823 233 -823 172 -823 -823 -823 -823 233 -823 -823 -823 175 75 -823 -823 -823 -823 172 -823 -823 233 -823 172 -823 -823 -823 172 -823 -823 -823 172 -823 -823 -823 -823 233 -823 -823 -823 -823 -823 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 3 E= 2.5e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATCAACTCAAGATGGATTAARGRCTTAAACCTAAGACSTGAAACT MEME-3 regular expression -------------------------------------------------------------------------------- AAAAATCAACTCAAGATGGATTAA[GA]G[GA]CTTAAACCTAAGAC[CG]TGAAACT -------------------------------------------------------------------------------- Time 883.06 secs. ******************************************************************************** ******************************************************************************** MOTIF GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 width = 49 sites = 4 llr = 211 E-value = 5.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:a::::a:::a:a:38:a:aa:a:a:8::::5:::a::::3838::: pos.-specific C :::::::::::::a::3:::5:::::::3:::5:::::83::3:::::: probability G a:3:::::::a::::a::::::::::::::::358a::::3:5:::::: matrix T ::8:aaaa:a:a::::53a:5::a:a:a:aaa3:3:a:388a:383aaa bits 2.3 * * * * * 2.1 * * * * * 1.9 * * * * * 1.6 ** ************* ** ******* *** *** * *** Relative 1.4 ** ************* ** ******* *** ***** * *** Entropy 1.2 **************** ** *********** ******** *** (76.3 bits) 0.9 **************** *************** ********* ****** 0.7 **************** ******************************** 0.5 ************************************************* 0.2 ************************************************* 0.0 ------------------------------------------------- Multilevel GATATTTTATGTACAGTATACAATATATATTTCAGGTACTTTGATATTT consensus G AT T C GGT TCG ATAT sequence C T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------- chrUn_KI270467v1:2687-31 + 1 1.38e-26 . gatattttatgtacagtatacaatatatatttcaggtactgtgatattt tatatacact chrUn_KI270467v1:3139-36 + 12 1.59e-25 tggctacttt gatattttatgtacagtttacaatatatattttgggtactttgatattt tatggacagt chrUn_KI270467v1:2006-25 + 19 1.07e-23 ggtgtacttt gagattttatgtacagaatataatatatctttcatgtaccttcatattt tatgtacagt chrUn_KI270466v1:230-730 + 18 2.66e-23 tgtgtacttt gatattttatgtacagcatataatatatatttggggtattttatatttt atgtacagta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:2687-31 1.4e-26 [+4]_51 chrUn_KI270467v1:3139-36 1.6e-25 11_[+4]_40 chrUn_KI270467v1:2006-25 1.1e-23 18_[+4]_33 chrUn_KI270466v1:230-730 2.7e-23 17_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT width=49 seqs=4 chrUn_KI270467v1:2687-31 ( 1) GATATTTTATGTACAGTATACAATATATATTTCAGGTACTGTGATATTT 1 chrUn_KI270467v1:3139-36 ( 12) GATATTTTATGTACAGTTTACAATATATATTTTGGGTACTTTGATATTT 1 chrUn_KI270467v1:2006-25 ( 19) GAGATTTTATGTACAGAATATAATATATCTTTCATGTACCTTCATATTT 1 chrUn_KI270466v1:230-730 ( 18) GATATTTTATGTACAGCATATAATATATATTTGGGGTATTTTATATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 25896 bayes= 12.6602 E= 5.1e-009 -865 -865 233 -865 172 -865 -865 -865 -865 -865 34 131 172 -865 -865 -865 -865 -865 -865 172 -865 -865 -865 172 -865 -865 -865 172 -865 -865 -865 172 172 -865 -865 -865 -865 -865 -865 172 -865 -865 233 -865 -865 -865 -865 172 172 -865 -865 -865 -865 233 -865 -865 172 -865 -865 -865 -865 -865 233 -865 -27 34 -865 73 131 -865 -865 -27 -865 -865 -865 172 172 -865 -865 -865 -865 133 -865 73 172 -865 -865 -865 172 -865 -865 -865 -865 -865 -865 172 172 -865 -865 -865 -865 -865 -865 172 172 -865 -865 -865 -865 -865 -865 172 131 34 -865 -865 -865 -865 -865 172 -865 -865 -865 172 -865 -865 -865 172 -865 133 34 -27 73 -865 133 -865 -865 -865 192 -27 -865 -865 233 -865 -865 -865 -865 172 172 -865 -865 -865 -865 192 -865 -27 -865 34 -865 131 -865 -865 34 131 -865 -865 -865 172 -27 34 133 -865 131 -865 -865 -27 -27 -865 -865 131 131 -865 -865 -27 -865 -865 -865 172 -865 -865 -865 172 -865 -865 -865 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 4 E= 5.1e-009 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.250000 0.000000 0.500000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.250000 0.250000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.250000 0.250000 0.500000 0.000000 0.750000 0.000000 0.000000 0.250000 0.250000 0.000000 0.000000 0.750000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATTTTATGTACAGHATAYAATATATATTTBRGGTACTTTVATATTT MEME-4 regular expression -------------------------------------------------------------------------------- GA[TG]ATTTTATGTACAG[TAC][AT]TA[CT]AATATAT[AC]TTT[CGT][AG][GT]GTA[CT][TC][TG]T[GAC][AT][TA][AT]TTT -------------------------------------------------------------------------------- Time 1141.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 width = 41 sites = 3 llr = 157 E-value = 6.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::aa::::a:::7:::3::a::::3a:::a:3a:7a: pos.-specific C :aa::::::aaa::7:37:7::::::a3::::a:::::::: probability G a:::a::::::::a:3::::7aa:aa::7:aa::a7:a::: matrix T :::a:a::a:::::37:3a3:::::::7::::::::::3:a bits 2.3 *** * *** * ** *** *** * * 2.1 *** * *** * ** *** *** * * 1.9 *** * *** * ** *** *** * * 1.6 ************** * ****** ****** ** ** Relative 1.4 ************** * ****** ****** ** ** Entropy 1.2 *************** ********** ********** ** (75.6 bits) 0.9 ************************************** ** 0.7 ***************************************** 0.5 ***************************************** 0.2 ***************************************** 0.0 ----------------------------------------- Multilevel GCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT consensus TGCT TA CA A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------- chr6:28790284-28790784 + 39 1.91e-26 ggtggcgcat gcctgtaatcccagctactcgggaggctgaggcaggagaat cgcttgaact chr1:146038261-146038761 - 31 3.17e-25 GGTGGCGGGC GCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAAT TGCTTGAACC chr7:127532184-127532684 + 58 4.85e-23 aggggctcat gcctgtaatcccagtgctttgggaggccaaggcagaagtat ta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:28790284-28790784 1.9e-26 38_[+5]_21 chr1:146038261-146038761 3.2e-25 30_[-5]_29 chr7:127532184-127532684 4.9e-23 57_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT width=41 seqs=3 chr6:28790284-28790784 ( 39) GCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT 1 chr1:146038261-146038761 ( 31) GCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAAT 1 chr7:127532184-127532684 ( 58) GCCTGTAATCCCAGTGCTTTGGGAGGCCAAGGCAGAAGTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 29880 bayes= 12.9407 E= 6.5e-004 -823 -823 233 -823 -823 233 -823 -823 -823 233 -823 -823 -823 -823 -823 172 -823 -823 233 -823 -823 -823 -823 172 172 -823 -823 -823 172 -823 -823 -823 -823 -823 -823 172 -823 233 -823 -823 -823 233 -823 -823 -823 233 -823 -823 172 -823 -823 -823 -823 -823 233 -823 -823 175 -823 14 -823 -823 75 114 114 75 -823 -823 -823 175 -823 14 -823 -823 -823 172 -823 175 -823 14 14 -823 175 -823 -823 -823 233 -823 -823 -823 233 -823 172 -823 -823 -823 -823 -823 233 -823 -823 -823 233 -823 -823 233 -823 -823 -823 75 -823 114 14 -823 175 -823 172 -823 -823 -823 -823 -823 233 -823 -823 -823 233 -823 -823 233 -823 -823 172 -823 -823 -823 -823 -823 233 -823 14 -823 175 -823 172 -823 -823 -823 -823 -823 233 -823 114 -823 -823 14 172 -823 -823 -823 -823 -823 -823 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 3 E= 6.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.333333 0.666667 0.666667 0.333333 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTGTAATCCCAGYKMYTYRGGAGGCYRAGGCAGRAGWAT MEME-5 regular expression -------------------------------------------------------------------------------- GCCTGTAATCCCAG[CT][TG][AC][CT]T[CT][GA]GGAGGC[TC][GA]AGGCAG[GA]AG[AT]AT -------------------------------------------------------------------------------- Time 1396.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GGVCCKGGGGSCGSCC MEME-6 width = 16 sites = 8 llr = 130 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGVCCKGGGGSCGSCC MEME-6 Description -------------------------------------------------------------------------------- Simplified A ::3::::::3:1:1:: pos.-specific C 1:598:133:591498 probability G 9a313698665:9513 matrix T :::::4::11:::::: bits 2.3 * 2.1 * 1.9 ** * * * * 1.6 ** ** ** ** ** Relative 1.4 ** ** ** *** ** Entropy 1.2 ** ***** *** ** (23.4 bits) 0.9 ** ****** ****** 0.7 **************** 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel GGCCCGGGGGCCGGCC consensus A GT CCAG C G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVCCKGGGGSCGSCC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr6:139374548-139375048 + 69 2.23e-11 GAGGCTGCGG GGCCCGGGGGCCGCCC AGTCGCCCCG chr18:50967693-50968193 + 17 1.34e-09 CTGCCCTCGC GGCCCGGGGGGAGCCC GGAAGCGCGC chr9:133375848-133376348 + 82 6.72e-09 AGCCTTAAAG GGGCCGCGCGCCGCCC GGG chr18:50879147-50879647 + 4 7.82e-09 AGA GGAGCGGGCGCCGGCC TCCCCTGGCC chr11:65919119-65919619 + 8 1.48e-08 GCACTAG GGCCCTGCGAGCGGCG TCTTAACCGG chr9:127979524-127980024 - 27 5.62e-08 CTTCTCTTGG GGCCCTGCGTGCCGCC TGCAGTAGGT chr1:146038261-146038761 - 72 1.03e-07 AAAATTAGCT GGGCGTGGTGGCGGGC GCCTGTAATC chr6:27131806-27132306 + 61 3.45e-07 AATCACTAAC CGACGGGGGACCGACG AGTATTTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVCCKGGGGSCGSCC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:139374548-139375048 2.2e-11 68_[+6]_16 chr18:50967693-50968193 1.3e-09 16_[+6]_68 chr9:133375848-133376348 6.7e-09 81_[+6]_3 chr18:50879147-50879647 7.8e-09 3_[+6]_81 chr11:65919119-65919619 1.5e-08 7_[+6]_77 chr9:127979524-127980024 5.6e-08 26_[-6]_58 chr1:146038261-146038761 1e-07 71_[-6]_13 chr6:27131806-27132306 3.4e-07 60_[+6]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVCCKGGGGSCGSCC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGVCCKGGGGSCGSCC width=16 seqs=8 chr6:139374548-139375048 ( 69) GGCCCGGGGGCCGCCC 1 chr18:50967693-50968193 ( 17) GGCCCGGGGGGAGCCC 1 chr9:133375848-133376348 ( 82) GGGCCGCGCGCCGCCC 1 chr18:50879147-50879647 ( 4) GGAGCGGGCGCCGGCC 1 chr11:65919119-65919619 ( 8) GGCCCTGCGAGCGGCG 1 chr9:127979524-127980024 ( 27) GGCCCTGCGTGCCGCC 1 chr1:146038261-146038761 ( 72) GGGCGTGGTGGCGGGC 1 chr6:27131806-27132306 ( 61) CGACGGGGGACCGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVCCKGGGGSCGSCC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 42330 bayes= 13.6912 E= 1.8e+002 -965 -66 214 -965 -965 -965 233 -965 -27 134 34 -965 -965 214 -66 -965 -965 192 34 -965 -965 -965 166 31 -965 -66 214 -965 -965 34 192 -965 -965 34 166 -127 -27 -965 166 -127 -965 134 134 -965 -127 214 -965 -965 -965 -66 214 -965 -127 92 134 -965 -965 214 -66 -965 -965 192 34 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVCCKGGGGSCGSCC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 8 E= 1.8e+002 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.125000 0.875000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.625000 0.125000 0.250000 0.000000 0.625000 0.125000 0.000000 0.500000 0.500000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVCCKGGGGSCGSCC MEME-6 regular expression -------------------------------------------------------------------------------- GG[CAG]C[CG][GT]G[GC][GC][GA][CG]CG[GC]C[CG] -------------------------------------------------------------------------------- Time 1651.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 width = 30 sites = 4 llr = 127 E-value = 4.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 Description -------------------------------------------------------------------------------- Simplified A :38:a:383a:aa:a:a:a::::::::a:: pos.-specific C 3:38::::::3::::5:5:3::::::::a: probability G 83:::8:::::::::::::5:::aaa:::: matrix T :5:3:3838:8::a:5:5:3aaa:::a::a bits 2.3 *** * 2.1 *** * 1.9 *** * 1.6 * * * **** * * ********** Relative 1.4 * *** * **** * * ********** Entropy 1.2 * **** ****** * * ********** (45.8 bits) 0.9 * ***************** ********** 0.7 * **************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel GTACAGTATATAATACACAGTTTGGGTACT consensus CACT TATA C T T C sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrUn_KI270467v1:3139-36 + 64 6.11e-18 gatattttat ggacagtatataatacacagtttgggtact ttggtat chrUn_KI270466v1:230-730 + 69 2.66e-16 tatattttat gtacagtatataatatatactttgggtact tt chrUn_KI270467v1:2006-25 + 71 1.68e-15 catattttat gtacagtatacaatatatattttgggtact chrUn_KI270467v1:2687-31 + 56 7.72e-14 attttatata cactatataataatacacagtttgggtact ttgatatttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:3139-36 6.1e-18 63_[+7]_7 chrUn_KI270466v1:230-730 2.7e-16 68_[+7]_2 chrUn_KI270467v1:2006-25 1.7e-15 70_[+7] chrUn_KI270467v1:2687-31 7.7e-14 55_[+7]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GDACAGTATATAATAYAYABTTTGGGTACT width=30 seqs=4 chrUn_KI270467v1:3139-36 ( 64) GGACAGTATATAATACACAGTTTGGGTACT 1 chrUn_KI270466v1:230-730 ( 69) GTACAGTATATAATATATACTTTGGGTACT 1 chrUn_KI270467v1:2006-25 ( 71) GTACAGTATACAATATATATTTTGGGTACT 1 chrUn_KI270467v1:2687-31 ( 56) CACTATATAATAATACACAGTTTGGGTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 35358 bayes= 13.1096 E= 4.4e+002 -865 34 192 -865 -27 -865 34 73 131 34 -865 -865 -865 192 -865 -27 172 -865 -865 -865 -865 -865 192 -27 -27 -865 -865 131 131 -865 -865 -27 -27 -865 -865 131 172 -865 -865 -865 -865 34 -865 131 172 -865 -865 -865 172 -865 -865 -865 -865 -865 -865 172 172 -865 -865 -865 -865 133 -865 73 172 -865 -865 -865 -865 133 -865 73 172 -865 -865 -865 -865 34 133 -27 -865 -865 -865 172 -865 -865 -865 172 -865 -865 -865 172 -865 -865 233 -865 -865 -865 233 -865 -865 -865 233 -865 -865 -865 -865 172 172 -865 -865 -865 -865 233 -865 -865 -865 -865 -865 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 4 E= 4.4e+002 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.250000 0.500000 0.750000 0.250000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.250000 0.000000 0.000000 0.750000 0.750000 0.000000 0.000000 0.250000 0.250000 0.000000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDACAGTATATAATAYAYABTTTGGGTACT MEME-7 regular expression -------------------------------------------------------------------------------- [GC][TAG][AC][CT]A[GT][TA][AT][TA]A[TC]AATA[CT]A[CT]A[GCT]TTTGGGTACT -------------------------------------------------------------------------------- Time 1907.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTCGAATCCGGCTCGAAGG MEME-8 width = 20 sites = 2 llr = 58 E-value = 2.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTCGAATCCGGCTCGAAGG MEME-8 Description -------------------------------------------------------------------------------- Simplified A :::::aa:::::::::aa:: pos.-specific C :::a::::aa::a:a::::: probability G a:::a:::::aa:::a::aa matrix T :aa::::a:::::a:::::: bits 2.3 * ** ***** ** ** 2.1 * ** ***** ** ** 1.9 * ** ***** ** ** 1.6 ******************** Relative 1.4 ******************** Entropy 1.2 ******************** (41.9 bits) 0.9 ******************** 0.7 ******************** 0.5 ******************** 0.2 ******************** 0.0 -------------------- Multilevel GTTCGAATCCGGCTCGAAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAATCCGGCTCGAAGG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr6:26568709-26569209 + 19 2.51e-13 taggtcgctg gttcgaatccggctcgaagg aGTTCACAAT chr6:26575438-26575938 + 1 2.51e-13 . gttcgaatccggctcgaagg acGAAAGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAATCCGGCTCGAAGG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26568709-26569209 2.5e-13 18_[+8]_62 chr6:26575438-26575938 2.5e-13 [+8]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAATCCGGCTCGAAGG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTCGAATCCGGCTCGAAGG width=20 seqs=2 chr6:26568709-26569209 ( 19) GTTCGAATCCGGCTCGAAGG 1 chr6:26575438-26575938 ( 1) GTTCGAATCCGGCTCGAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAATCCGGCTCGAAGG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 40338 bayes= 14.2998 E= 2.9e+005 -765 -765 233 -765 -765 -765 -765 172 -765 -765 -765 172 -765 233 -765 -765 -765 -765 233 -765 172 -765 -765 -765 172 -765 -765 -765 -765 -765 -765 172 -765 233 -765 -765 -765 233 -765 -765 -765 -765 233 -765 -765 -765 233 -765 -765 233 -765 -765 -765 -765 -765 172 -765 233 -765 -765 -765 -765 233 -765 172 -765 -765 -765 172 -765 -765 -765 -765 -765 233 -765 -765 -765 233 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAATCCGGCTCGAAGG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 2 E= 2.9e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTCGAATCCGGCTCGAAGG MEME-8 regular expression -------------------------------------------------------------------------------- GTTCGAATCCGGCTCGAAGG -------------------------------------------------------------------------------- Time 2164.41 secs. ******************************************************************************** ******************************************************************************** MOTIF VRHGTGSWGRGGRAGGGGVMRA MEME-9 width = 22 sites = 18 llr = 251 E-value = 1.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif VRHGTGSWGRGGRAGGGGVMRA MEME-9 Description -------------------------------------------------------------------------------- Simplified A 444:21:625134722233636 pos.-specific C 313:2:3:::::21::1:2411 probability G 3519296284974188764:53 matrix T ::315113:1:::1::111:1: bits 2.3 2.1 * 1.9 * * 1.6 * * * * Relative 1.4 * * * ** ** Entropy 1.2 * * * ** ** (20.1 bits) 0.9 * ** * ** *** * 0.7 * * ** ***** **** * * 0.5 ** * ************* *** 0.2 ********************** 0.0 ---------------------- Multilevel AGAGTGGAGAGGGAGGGGGAGA consensus CAC CTAG AA A AACAG sequence G T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRHGTGSWGRGGRAGGGGVMRA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr10:69758048-69758548 + 63 3.10e-10 CTAGCTTGTG GGAGAGCAGGGGGAGGGACAGA AGCTCCTCCA chr6:2770239-2770739 + 5 1.08e-08 CGTC AGTGAGGAGAGGGTGGGGACAG AGAAGAAATG chr17:13888002-13888502 - 17 1.21e-08 GTGCCAAGCC CATGTGCAGTGGAAGGGAGAGA GGAATCTGAG chr14:59595043-59595543 - 3 2.36e-08 AACTCTCATC ACTGTGCTGGGGAAAGGGCAGG TG chr17:29042457-29042957 - 25 5.43e-08 TGGTGAGGTC AGGGGGTAGAGGCAGGGGCCAA TTGGGAGGGC chr9:85960753-85961253 + 68 7.31e-08 GGATTAGTGG AGAGTGGTGGAGAAGGAGGAAA GGATAAACAG chr7:104884060-104884560 - 3 8.86e-08 AACAGAGAAC GAAGTGGAAGGAAAGAGGAAGG GG chr10:10728353-10728853 + 57 1.41e-07 GTTACATGGT GAATAGGAGAGGGTGGGGGACA GCAGGAGGAC chrX:40175812-40176312 - 48 1.55e-07 GCGCTACTCT AGCGTGGGAGGGAAAGGACACA AACTTGGCCA chr16:51151253-51151753 - 77 1.55e-07 AG CGCGCGGAGAGACAGGGGTCTG CAGCAAATCA chr6:27213589-27214089 + 24 2.63e-07 agcgagaatt cgtGTGTGGGGGGGGGAAGAAA ATAAGCCTCc chr4:19791660-19792160 - 16 2.86e-07 AACTGGGGAA AGAGTAGAGAGAGAGGTGAAGA TATTTGTAAT chr3:58463012-58463512 - 68 3.11e-07 ACCTCTGAGA GGCGTTGTGAGGGAGGGTTAAA TTAAATGAGG chr11:124861662-12486216 - 61 3.11e-07 TGTGTGTGTT CACGTGCTAGGGGAGAGAACAG CTACCCCAGG chr18:50879147-50879647 - 54 5.09e-07 GCGGGGGCCG CACGCGCGGAGGCCGGAGGCGC GGCAGCGCTG chr6:27237272-27237772 + 70 5.09e-07 GACTGCGGCA AAATCGGAGAGAGAAGGTGAGA ACCCTCgtg chr12:120646970-12064747 + 22 6.97e-07 TAATACCAAT GCTGGGCAGGGGAAGACGgcgc tttctagatg chr5:148397392-148397892 + 23 9.45e-07 AAATCATTTT AAAGGGGTAAGAAGAGGGACGA GAAGTAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRHGTGSWGRGGRAGGGGVMRA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:69758048-69758548 3.1e-10 62_[+9]_16 chr6:2770239-2770739 1.1e-08 4_[+9]_74 chr17:13888002-13888502 1.2e-08 16_[-9]_62 chr14:59595043-59595543 2.4e-08 2_[-9]_76 chr17:29042457-29042957 5.4e-08 24_[-9]_54 chr9:85960753-85961253 7.3e-08 67_[+9]_11 chr7:104884060-104884560 8.9e-08 2_[-9]_76 chr10:10728353-10728853 1.4e-07 56_[+9]_22 chrX:40175812-40176312 1.5e-07 47_[-9]_31 chr16:51151253-51151753 1.5e-07 76_[-9]_2 chr6:27213589-27214089 2.6e-07 23_[+9]_55 chr4:19791660-19792160 2.9e-07 15_[-9]_63 chr3:58463012-58463512 3.1e-07 67_[-9]_11 chr11:124861662-12486216 3.1e-07 60_[-9]_18 chr18:50879147-50879647 5.1e-07 53_[-9]_25 chr6:27237272-27237772 5.1e-07 69_[+9]_9 chr12:120646970-12064747 7e-07 21_[+9]_57 chr5:148397392-148397892 9.4e-07 22_[+9]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRHGTGSWGRGGRAGGGGVMRA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VRHGTGSWGRGGRAGGGGVMRA width=22 seqs=18 chr10:69758048-69758548 ( 63) GGAGAGCAGGGGGAGGGACAGA 1 chr6:2770239-2770739 ( 5) AGTGAGGAGAGGGTGGGGACAG 1 chr17:13888002-13888502 ( 17) CATGTGCAGTGGAAGGGAGAGA 1 chr14:59595043-59595543 ( 3) ACTGTGCTGGGGAAAGGGCAGG 1 chr17:29042457-29042957 ( 25) AGGGGGTAGAGGCAGGGGCCAA 1 chr9:85960753-85961253 ( 68) AGAGTGGTGGAGAAGGAGGAAA 1 chr7:104884060-104884560 ( 3) GAAGTGGAAGGAAAGAGGAAGG 1 chr10:10728353-10728853 ( 57) GAATAGGAGAGGGTGGGGGACA 1 chrX:40175812-40176312 ( 48) AGCGTGGGAGGGAAAGGACACA 1 chr16:51151253-51151753 ( 77) CGCGCGGAGAGACAGGGGTCTG 1 chr6:27213589-27214089 ( 24) CGTGTGTGGGGGGGGGAAGAAA 1 chr4:19791660-19792160 ( 16) AGAGTAGAGAGAGAGGTGAAGA 1 chr3:58463012-58463512 ( 68) GGCGTTGTGAGGGAGGGTTAAA 1 chr11:124861662-12486216 ( 61) CACGTGCTAGGGGAGAGAACAG 1 chr18:50879147-50879647 ( 54) CACGCGCGGAGGCCGGAGGCGC 1 chr6:27237272-27237772 ( 70) AAATCGGAGAGAGAAGGTGAGA 1 chr12:120646970-12064747 ( 22) GCTGGGCAGGGGAAGACGGCGC 1 chr5:148397392-148397892 ( 23) AAAGGGGTAAGAAGAGGGACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRHGTGSWGRGGRAGGGGVMRA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 39342 bayes= 10.3948 E= 1.1e+005 56 49 49 -1081 36 -83 134 -1081 36 49 -183 -12 -1081 -1081 217 -144 -86 -25 -25 73 -244 -1081 217 -244 -1081 75 149 -144 88 -1081 -25 -12 -44 -1081 197 -1081 73 -1081 117 -244 -244 -1081 225 -1081 -12 -1081 187 -1081 36 -25 117 -1081 126 -183 -83 -144 -44 -1081 197 -1081 -86 -1081 207 -1081 -86 -183 187 -244 -12 -1081 163 -144 -12 17 97 -144 102 97 -1081 -1081 14 -83 134 -244 102 -83 49 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRHGTGSWGRGGRAGGGGVMRA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 18 E= 1.1e+005 0.444444 0.277778 0.277778 0.000000 0.388889 0.111111 0.500000 0.000000 0.388889 0.277778 0.055556 0.277778 0.000000 0.000000 0.888889 0.111111 0.166667 0.166667 0.166667 0.500000 0.055556 0.000000 0.888889 0.055556 0.000000 0.333333 0.555556 0.111111 0.555556 0.000000 0.166667 0.277778 0.222222 0.000000 0.777778 0.000000 0.500000 0.000000 0.444444 0.055556 0.055556 0.000000 0.944444 0.000000 0.277778 0.000000 0.722222 0.000000 0.388889 0.166667 0.444444 0.000000 0.722222 0.055556 0.111111 0.111111 0.222222 0.000000 0.777778 0.000000 0.166667 0.000000 0.833333 0.000000 0.166667 0.055556 0.722222 0.055556 0.277778 0.000000 0.611111 0.111111 0.277778 0.222222 0.388889 0.111111 0.611111 0.388889 0.000000 0.000000 0.333333 0.111111 0.500000 0.055556 0.611111 0.111111 0.277778 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRHGTGSWGRGGRAGGGGVMRA MEME-9 regular expression -------------------------------------------------------------------------------- [ACG][GA][ACT]GTG[GC][AT][GA][AG]G[GA][GA]A[GA]GG[GA][GAC][AC][GA][AG] -------------------------------------------------------------------------------- Time 2418.22 secs. ******************************************************************************** ******************************************************************************** MOTIF CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 width = 42 sites = 6 llr = 191 E-value = 8.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::7:7353::8::75:::82::::23223:::35::::2::: pos.-specific C a5:::53:27::::::27:::37:2:3722:a:2225:2:25 probability G ::3::22:722:a333:::::22:733:::::23:2::5:25 matrix T :5:a3::722:a::278328a52a:32258a:5:875a2a7: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * ** * * ** * * Relative 1.4 * * ** * * ** * * * Entropy 1.2 * * *** ***** * *** * * * * (45.9 bits) 0.9 **** ****** ****** *** * *** * ** * * 0.7 ****** ******* ****** *** * *** **** *** 0.5 ************************* *********** *** 0.2 ****************************************** 0.0 ------------------------------------------ Multilevel CCATACATGCATGAATTCATTTCTGACCTTTCTATTCTGTTC consensus TG TACA GGG T C GG A AG T G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------ chr9:87815973-87816473 - 8 3.46e-18 AATCAGTTGG CTGTAGATGCATGGAGTTATTTCTGGGCTTTCTGTTCTGTCC CTTTGGT chr13:78802864-78803364 + 58 7.11e-18 aaattgcttg ccataaatgcatgaattcattcctaagttttctattctgttc c chr19:29355570-29356070 - 40 9.24e-16 AATCAATTGA CCATAAATGTATGGGTTTATTTCTGGACTCTCAATTCTATTC ATTTGATCTA chr3:14329320-14329820 + 45 6.50e-15 TTGTTCCGTT CTGTACCAGCGTGAGTTCATTGTTCTTCCTTCTGCTTTGTTG TTGAGAAAGC chr2:90382371-90382871 - 28 6.42e-14 CCATTTGATT CCATTCGATGATGATTCCATTCGTGTCCATTCAATGTTTTTG TTCTATTCCA chr11:11608693-11609193 + 28 7.89e-14 TCATTAGTCC CTATTCCTCCATGAAGTCTATTCTGACAATTCGCTCTTCTGG AATTCAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:87815973-87816473 3.5e-18 7_[-10]_51 chr13:78802864-78803364 7.1e-18 57_[+10]_1 chr19:29355570-29356070 9.2e-16 39_[-10]_19 chr3:14329320-14329820 6.5e-15 44_[+10]_14 chr2:90382371-90382871 6.4e-14 27_[-10]_31 chr11:11608693-11609193 7.9e-14 27_[+10]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS width=42 seqs=6 chr9:87815973-87816473 ( 8) CTGTAGATGCATGGAGTTATTTCTGGGCTTTCTGTTCTGTCC 1 chr13:78802864-78803364 ( 58) CCATAAATGCATGAATTCATTCCTAAGTTTTCTATTCTGTTC 1 chr19:29355570-29356070 ( 40) CCATAAATGTATGGGTTTATTTCTGGACTCTCAATTCTATTC 1 chr3:14329320-14329820 ( 45) CTGTACCAGCGTGAGTTCATTGTTCTTCCTTCTGCTTTGTTG 1 chr2:90382371-90382871 ( 28) CCATTCGATGATGATTCCATTCGTGTCCATTCAATGTTTTTG 1 chr11:11608693-11609193 ( 28) CTATTCCTCCATGAAGTCTATTCTGACAATTCGCTCTTCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 42 n= 29382 bayes= 11.9163 E= 8.3e+002 -923 233 -923 -923 -923 133 -923 73 114 -923 75 -923 -923 -923 -923 173 114 -923 -923 14 14 133 -25 -923 73 75 -25 -923 14 -923 -923 114 -923 -25 175 -86 -923 175 -25 -86 146 -923 -25 -923 -923 -923 -923 173 -923 -923 233 -923 114 -923 75 -923 73 -923 75 -86 -923 -923 75 114 -923 -25 -923 146 -923 175 -923 14 146 -923 -923 -86 -86 -923 -923 146 -923 -923 -923 173 -923 75 -25 73 -923 175 -25 -86 -923 -923 -923 173 -86 -25 175 -923 14 -923 75 14 -86 75 75 -86 -86 175 -923 -86 14 -25 -923 73 -923 -25 -923 146 -923 -923 -923 173 -923 233 -923 -923 14 -923 -25 73 73 -25 75 -923 -923 -25 -923 146 -923 -25 -25 114 -923 133 -923 73 -923 -923 -923 173 -86 -25 133 -86 -923 -923 -923 173 -923 -25 -25 114 -923 133 133 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 42 nsites= 6 E= 8.3e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.666667 0.000000 0.000000 0.333333 0.333333 0.500000 0.166667 0.000000 0.500000 0.333333 0.166667 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.166667 0.666667 0.166667 0.000000 0.666667 0.166667 0.166667 0.833333 0.000000 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.500000 0.000000 0.333333 0.166667 0.000000 0.000000 0.333333 0.666667 0.000000 0.166667 0.000000 0.833333 0.000000 0.666667 0.000000 0.333333 0.833333 0.000000 0.000000 0.166667 0.166667 0.000000 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.166667 0.500000 0.000000 0.666667 0.166667 0.166667 0.000000 0.000000 0.000000 1.000000 0.166667 0.166667 0.666667 0.000000 0.333333 0.000000 0.333333 0.333333 0.166667 0.333333 0.333333 0.166667 0.166667 0.666667 0.000000 0.166667 0.333333 0.166667 0.000000 0.500000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.166667 0.500000 0.500000 0.166667 0.333333 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.166667 0.166667 0.666667 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.166667 0.166667 0.500000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.500000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYRTWMMWGCATGRRKTYATTYCTGDNCWTTCWRTTYTGTTS MEME-10 regular expression -------------------------------------------------------------------------------- C[CT][AG]T[AT][CA][AC][TA]GCATG[AG][AG][TG]T[CT]ATT[TC]CTG[AGT][CG]C[TA]TTC[TA][AG]TT[CT]TGTT[CG] -------------------------------------------------------------------------------- Time 2671.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:115594438-115594938 2.61e-01 42_[+7(9.39e-05)]_28 chrX:73945082-73945582 2.80e-01 25_[-10(3.37e-05)]_33 chr4:174423235-174423735 1.74e-02 65_[+9(3.95e-05)]_13 chr10:26859172-26859672 9.79e-01 100 chr6:128367593-128368093 2.95e-01 6_[-10(2.65e-05)]_52 chr1:174444352-174444852 9.27e-01 100 chr1:176762764-176763264 3.16e-02 36_[+9(7.60e-05)]_42 chrX:89202295-89202795 6.99e-01 100 chr9:130787920-130788420 8.53e-01 100 chrX:72533101-72533601 1.72e-01 3_[+4(8.84e-05)]_48 chr8:38229226-38229726 6.63e-01 100 chrX:62706579-62707079 9.32e-01 100 chr5:174056239-174056739 1.65e-01 4_[+2(2.78e-05)]_53 chr1:172322854-172323354 1.27e-01 25_[+10(5.92e-05)]_33 chr1:90990806-90991306 8.20e-01 100 chrX:73840868-73841368 7.07e-01 100 chr6:100878221-100878721 8.85e-01 100 chrX:70622378-70622878 7.12e-01 100 chr3:160124887-160125387 6.34e-01 100 chrX:37380831-37381331 3.20e-01 59_[-1(1.68e-05)]_27 chr8:42512864-42513364 5.66e-01 100 chr13:40454467-40454967 9.58e-01 100 chr18:22493131-22493631 8.34e-02 15_[+1(1.75e-06)]_71 chrX:83001829-83002329 9.05e-01 100 chr1:178728925-178729425 2.38e-01 100 chr18:50967693-50968193 5.87e-13 16_[+6(1.34e-09)]_4_[-2(2.72e-14)]_\ 21 chr22:22995028-22995528 1.93e-01 100 chr1:179876215-179876715 4.01e-01 100 chr6:26532651-26533151 6.08e-01 100 chrX:77894549-77895049 8.22e-01 100 chr3:178784993-178785493 5.13e-01 100 chr20:18428659-18429159 1.92e-02 31_[+1(3.02e-06)]_55 chr16:84819448-84819948 1.82e-04 33_[+1(1.89e-07)]_53 chr5:72921841-72922341 7.42e-03 33_[-1(8.52e-07)]_53 chrX:32352436-32352936 9.42e-01 100 chrX:33229576-33230076 6.38e-02 100 chr19:28556588-28557088 3.96e-02 7_[-2(1.11e-05)]_50 chr11:11608693-11609193 1.59e-07 27_[+10(7.89e-14)]_31 chr5:40758277-40758777 7.13e-01 100 chr6:167831530-167832030 9.54e-01 100 chr6:100551509-100552009 6.95e-01 100 chr6:27583232-27583732 4.18e-08 27_[+2(4.45e-14)]_30 chr3:182358886-182359386 4.68e-01 100 chr10:92839064-92839564 2.28e-04 19_[+1(5.82e-08)]_67 chr1:222464861-222465361 1.57e-01 2_[-6(8.77e-05)]_82 chr19:32387656-32388156 7.76e-01 100 chr6:28758123-28758623 1.38e-02 44_[+2(4.99e-05)]_13 chr5:79241832-79242332 9.78e-01 100 chr5:173920209-173920709 8.26e-01 100 chrX:73944881-73945381 9.70e-01 100 chr10:44326429-44326929 1.26e-03 54_[+1(1.89e-07)]_32 chr6:96589179-96589679 9.92e-01 100 chr13:40318326-40318826 8.36e-05 57_[+1(3.92e-08)]_29 chr10:60543467-60543967 9.01e-01 100 chr7:152086491-152086991 1.83e-01 4_[-1(7.47e-07)]_82 chr14:102377608-10237810 1.72e-03 79_[+1(1.39e-07)]_7 chr5:59583748-59584248 3.45e-03 37_[-1(7.11e-07)]_49 chr10:1054973-1055473 9.51e-01 100 chr12:32307070-32307570 6.55e-01 16_[+10(4.45e-05)]_42 chr2:68469715-68470215 5.65e-01 100 chr5:91017822-91018322 5.33e-01 100 chr13:37115774-37116274 9.92e-01 100 chr11:111796956-11179745 1.67e-02 40_[-1(2.33e-07)]_46 chrX:107317547-107318047 7.14e-01 100 chrX:139669732-139670232 9.54e-01 100 chr19:44188243-44188743 8.29e-01 100 chr6:78735409-78735909 1.24e-03 17_[-3(5.47e-09)]_34 chr10:26858973-26859473 2.99e-01 100 chr4:110904758-110905258 6.01e-01 100 chrX:75058514-75059014 8.30e-01 100 chr18:50748882-50749382 1.30e-01 100 chr9:68482586-68483086 7.58e-03 37_[+1(2.03e-08)]_49 chr19:37178372-37178872 7.54e-01 100 chr1:169566492-169566992 4.20e-01 100 chr5:143355713-143356213 2.35e-02 10_[-1(9.19e-07)]_76 chr9:130825361-130825861 8.80e-01 100 chr14:59595043-59595543 4.85e-07 2_[-9(2.36e-08)]_19_[-1(1.16e-08)]_\ 43 chr16:51151253-51151753 6.07e-07 14_[+1(3.03e-08)]_48_[-9(1.55e-07)]_\ 2 chr5:32442289-32442789 7.61e-01 100 chrX:62585553-62586053 6.67e-01 100 chr5:92186029-92186529 9.04e-01 100 chr13:51541761-51542261 9.39e-04 49_[+1(1.89e-07)]_9_[-1(5.17e-05)]_\ 14 chr10:118970613-11897111 4.76e-02 61_[-1(8.52e-07)]_25 chr5:148397392-148397892 4.52e-02 22_[+9(9.45e-07)]_56 chr5:43361251-43361751 4.25e-01 100 chr3:14329320-14329820 1.01e-07 44_[+10(6.50e-15)]_14 chr16:50323411-50323911 1.11e-01 59_[+1(4.96e-07)]_27 chr7:131335085-131335585 1.21e-01 18_[+7(4.31e-05)]_52 chr4:110678477-110678977 2.70e-04 36_[+1(6.70e-09)]_50 chr10:133359659-13336015 4.26e-04 24_[+1(1.28e-06)]_62 chr3:151200531-151201031 2.53e-04 56_[+1(4.79e-08)]_30 chrX:76093556-76094056 2.97e-01 65_[-1(3.45e-05)]_21 chr6:126889984-126890484 8.35e-06 61_[+1(6.70e-09)]_25 chr9:70747342-70747842 2.87e-04 18_[-1(1.89e-07)]_68 chr3:181328994-181329494 9.56e-01 100 chr4:89847692-89848192 2.27e-02 44_[+4(5.06e-05)]_7 chr5:181207667-181208167 4.28e-01 100 chr10:6115754-6116254 2.08e-02 58_[-1(5.82e-08)]_28 chr19:43087835-43088335 8.81e-01 100 chr10:63460476-63460976 5.28e-01 100 chr7:78616562-78617062 1.39e-01 100 chr2:180953474-180953974 8.40e-03 58_[+1(3.03e-08)]_28 chr1:178474081-178474581 5.40e-01 100 chr19:30028628-30029128 1.97e-01 1_[+4(4.24e-05)]_50 chr1:11178242-11178742 5.66e-02 100 chr18:23132006-23132506 6.90e-01 100 chr2:205270648-205271148 2.57e-02 50_[+1(1.39e-07)]_36 chr9:133375848-133376348 4.28e-12 14_[-2(6.03e-15)]_24_[+6(6.72e-09)]_\ 3 chr19:28341908-28342408 7.36e-04 32_[+1(1.13e-07)]_54 chr18:34117023-34117523 8.11e-01 100 chr9:97679143-97679643 5.03e-01 100 chr6:72926323-72926823 7.97e-01 100 chrX:83784587-83785087 1.73e-01 100 chr3:177611244-177611744 7.09e-04 60_[+1(4.79e-08)]_26 chr3:167151506-167152006 8.90e-01 100 chr7:21923678-21924178 8.87e-01 100 chrX:73914434-73914934 2.40e-01 100 chr19:28473798-28474298 2.75e-05 14_[-1(6.70e-09)]_72 chr16:84799994-84800494 9.65e-01 100 chr2:90382371-90382871 7.76e-07 27_[-10(6.42e-14)]_31 chr5:122429912-122430412 9.61e-01 100 chr7:121561627-121562127 1.06e-03 68_[+1(5.82e-08)]_18 chr6:24583681-24584181 2.94e-01 37_[-1(2.08e-06)]_49 chr6:27392604-27393104 1.35e-02 20_[-1(1.89e-07)]_66 chr12:29754741-29755241 8.51e-01 100 chr19:29968091-29968591 6.29e-01 100 chr5:15009413-15009913 8.33e-01 100 chr7:156691704-156692204 1.10e-01 63_[+1(1.39e-07)]_23 chr2:156781530-156782030 5.77e-18 44_[+3(1.28e-28)]_7 chr7:113968669-113969169 9.01e-03 51_[-1(3.92e-08)]_35 chr18:34524279-34524779 8.56e-01 100 chrX:74606261-74606761 6.95e-01 100 chr5:36992324-36992824 6.32e-01 100 chr6:97215729-97216229 5.73e-01 100 chrX:72722939-72723439 9.85e-01 100 chr1:171139903-171140403 1.24e-01 100 chr5:132877864-132878364 4.34e-03 20_[+1(4.03e-06)]_9_[-1(3.88e-05)]_\ 15_[-8(4.65e-05)]_8 chr5:109412070-109412570 6.85e-01 100 chr1:164755652-164756152 1.53e-04 57_[-1(9.82e-09)]_29 chr3:18580220-18580720 1.55e-02 53_[-1(8.52e-07)]_33 chr8:37014318-37014818 1.12e-02 53_[+1(1.75e-06)]_33 chr1:179990284-179990784 9.31e-01 100 chrX:71081803-71082303 3.28e-04 1_[+1(5.41e-07)]_3_[+10(1.12e-05)]_\ 40 chr11:86592873-86593373 2.03e-02 20_[+1(2.12e-07)]_66 chr8:41447400-41447900 2.19e-05 16_[+9(5.71e-06)]_15_[+1(3.60e-07)]_\ 33 chr5:92641314-92641814 1.08e-02 39_[-1(2.46e-06)]_47 chr3:23968603-23969103 4.71e-02 21_[+7(2.74e-05)]_49 chr8:59664023-59664523 1.18e-03 29_[-1(2.97e-09)]_57 chr6:26328000-26328500 3.04e-01 100 chr1:214660126-214660626 8.26e-04 12_[-9(3.62e-05)]_30_[-1(3.92e-08)]_\ 22 chr9:111731021-111731521 4.01e-02 58_[+1(6.32e-07)]_28 chr5:115594239-115594739 1.23e-02 74_[+1(5.89e-07)]_12 chr5:94968198-94968698 9.82e-01 100 chrX:73850030-73850530 5.79e-01 100 chrX:24772093-24772593 7.73e-01 100 chr2:177038765-177039265 9.47e-01 100 chr19:44193589-44194089 2.11e-01 5_[-3(9.08e-05)]_46 chr1:213600814-213601314 4.46e-06 58_[-1(9.05e-09)]_6_[+9(3.46e-05)] chr22:27911256-27911756 3.64e-03 48_[-1(6.56e-05)]_[+1(3.03e-08)]_24 chr1:85316242-85316742 2.75e-02 55_[-1(1.13e-07)]_31 chr1:110176197-110176697 8.33e-05 11_[-2(9.27e-05)]_7_[+1(5.82e-08)]_\ 25 chr5:16489243-16489743 5.70e-01 100 chr13:75879623-75880123 5.74e-03 36_[-1(7.01e-08)]_50 chr2:178795805-178796305 6.31e-01 100 chr17:46742706-46743206 1.07e-02 74_[+1(4.00e-07)]_12 chr12:19068054-19068554 2.10e-04 74_[+1(2.03e-08)]_12 chr6:143400523-143401023 6.29e-01 100 chr12:60947481-60947981 1.61e-02 36_[-1(6.70e-09)]_50 chr4:174423027-174423527 6.80e-04 66_[+1(7.71e-08)]_20 chr7:70131677-70132177 8.88e-01 100 chr1:94234610-94235110 9.92e-01 100 chr9:128072389-128072889 7.68e-03 44_[+1(2.54e-07)]_42 chr10:87793009-87793509 7.86e-01 100 chr3:188348575-188349075 2.06e-03 53_[-1(5.82e-08)]_33 chr2:70870664-70871164 6.78e-04 66_[+1(6.45e-08)]_20 chr10:28431871-28432371 3.27e-01 100 chr6:7532559-7533059 7.90e-01 100 chr9:127979524-127980024 1.33e-07 26_[-6(5.62e-08)]_17_[+5(3.40e-05)] chr1:107670027-107670527 9.78e-02 100 chr12:45268724-45269224 6.04e-03 8_[-1(1.89e-07)]_78 chr9:127277730-127278230 1.82e-02 40_[+1(1.13e-07)]_46 chr10:121169344-12116984 1.65e-04 45_[+1(1.16e-08)]_41 chr19:28810753-28811253 4.89e-01 100 chr6:143324134-143324634 9.20e-01 100 chr5:115858000-115858500 1.67e-01 48_[-1(1.49e-06)]_38 chr7:112137413-112137913 4.78e-01 100 chr5:90296892-90297392 1.87e-01 100 chr1:176721184-176721684 3.51e-01 100 chr1:146035506-146036006 1.20e-12 11_[-2(2.04e-14)]_46 chr5:38780828-38781328 8.55e-02 55_[+1(2.60e-06)]_31 chr5:42620743-42621243 1.12e-02 50_[-1(8.42e-08)]_36 chr4:76198313-76198813 1.09e-03 39_[+1(3.92e-08)]_47 chr1:146039259-146039759 6.64e-01 100 chr3:158260385-158260885 1.11e-01 16_[+1(4.96e-07)]_70 chr8:99802083-99802583 5.49e-04 36_[-1(1.55e-08)]_50 chr1:180157607-180158107 7.84e-01 100 chr5:116970253-116970753 4.74e-03 22_[+1(8.52e-07)]_64 chr9:92606958-92607458 8.85e-03 69_[-1(1.13e-07)]_17 chr1:67367600-67368100 1.22e-03 29_[+1(6.32e-07)]_42_[+1(2.97e-05)]_\ 1 chr10:61944415-61944915 8.28e-01 100 chr10:27347361-27347861 3.84e-02 43_[-1(2.04e-05)]_10_[-1(3.60e-07)]_\ 19 chr19:29355570-29356070 6.51e-09 39_[-10(9.24e-16)]_19 chr7:113412366-113412866 3.61e-02 40_[+1(4.00e-07)]_46 chr5:68221469-68221969 4.68e-02 9_[+1(9.91e-08)]_77 chr7:140894230-140894730 1.30e-01 72_[+9(3.28e-06)]_6 chr8:117461292-117461792 1.02e-02 61_[+1(1.89e-07)]_25 chr3:63467354-63467854 1.19e-02 40_[+1(3.03e-08)]_46 chr7:78164445-78164945 7.42e-02 25_[+1(7.99e-07)]_61 chr13:39577790-39578290 1.54e-02 36_[+1(3.92e-08)]_50 chr6:83883268-83883768 2.41e-02 100 chr6:56649060-56649560 7.72e-01 100 chr13:38008574-38009074 2.64e-03 54_[-1(5.89e-07)]_32 chrX:74360896-74361396 4.14e-02 23_[+9(9.53e-05)]_[+1(7.11e-07)]_41 chr19:57599607-57600107 2.13e-03 16_[-1(6.32e-07)]_70 chr5:121503430-121503930 1.10e-02 34_[-1(1.13e-07)]_52 chr7:127532184-127532684 1.07e-20 35_[-1(1.13e-07)]_8_[+5(4.85e-23)]_\ 2 chr1:22470926-22471426 1.10e-03 55_[+1(2.96e-07)]_31 chr10:10728353-10728853 4.91e-03 56_[+9(1.41e-07)]_22 chr11:95917109-95917609 1.25e-01 41_[+1(2.08e-06)]_45 chrUn_GL000224v1:3592-40 6.74e-01 100 chr10:112793907-11279440 3.71e-01 13_[+9(8.20e-05)]_65 chrX:139832807-139833307 5.99e-01 100 chr5:55437906-55438406 4.68e-01 100 chr13:94914673-94915173 2.66e-01 100 chr9:106035743-106036243 4.77e-03 66_[-1(9.05e-09)]_20 chr17:63842461-63842961 2.64e-10 8_[-2(3.43e-15)]_3_[-2(1.88e-05)]_3 chrX:73821623-73822123 8.81e-01 100 chr3:105527966-105528466 7.17e-04 35_[-9(8.52e-05)]_16_[+1(7.99e-07)]_\ 13 chr19:50135981-50136481 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7_[+6(1.48e-08)]_11_[+2(1.76e-14)]_\ 23 chr14:49586807-49587307 7.91e-01 100 chr8:60807677-60808177 1.24e-02 36_[+1(4.00e-07)]_50 chr6:150409604-150410104 9.39e-02 41_[+1(2.12e-07)]_45 chr6:27213589-27214089 3.02e-05 23_[+9(2.63e-07)]_55 chr10:110011665-11001216 3.45e-03 28_[-1(7.11e-07)]_58 chrX:44946692-44947192 5.38e-03 32_[+1(6.45e-08)]_54 chr13:44810009-44810509 3.17e-04 44_[+1(9.05e-09)]_42 chr6:143745593-143746093 3.08e-02 79_[-1(5.41e-07)]_7 chr5:16406575-16407075 8.24e-03 42_[+1(4.79e-08)]_44 chr13:98507150-98507650 6.39e-04 36_[+1(1.60e-07)]_50 chr12:14257678-14258178 8.80e-03 73_[+1(3.57e-06)]_13 chr13:98049996-98050496 2.85e-05 54_[+1(2.03e-08)]_32 chr1:83065914-83066414 6.98e-03 57_[-1(1.13e-07)]_29 chr10:125768253-12576875 5.78e-04 26_[+1(1.39e-07)]_60 chr1:52502740-52503240 9.98e-06 53_[+1(3.74e-09)]_33 chr1:221284046-221284546 2.81e-02 33_[-1(2.96e-07)]_53 chr5:181173680-181174180 2.66e-03 28_[+2(9.45e-07)]_29 chr1:78334038-78334538 4.16e-03 32_[-1(6.70e-09)]_54 chr2:58240518-58241018 5.94e-02 34_[-1(2.96e-07)]_52 chr7:42226439-42226939 6.66e-03 51_[-1(3.03e-08)]_35 chr6:141486883-141487383 3.96e-03 48_[+1(6.70e-09)]_38 chr7:104884060-104884560 4.08e-06 2_[-9(8.86e-08)]_29_[+1(2.03e-08)]_\ 33 chr2:168434072-168434572 4.37e-02 36_[+1(7.99e-07)]_6_[+1(7.99e-07)]_\ 30 chr1:61808867-61809367 1.28e-03 52_[-1(6.70e-09)]_34 chr17:21040159-21040659 1.46e-05 65_[+1(7.01e-08)]_4_[-6(2.74e-05)]_\ 1 chr6:143264395-143264895 2.13e-03 51_[+1(1.39e-07)]_35 chr5:10288450-10288950 9.43e-06 38_[+1(4.79e-08)]_4_[+2(6.46e-05)]_\ 1 chr9:70830579-70831079 1.08e-02 42_[+1(4.79e-08)]_44 chrX:149010191-149010691 1.02e-02 60_[+1(1.60e-07)]_26 chr14:95291739-95292239 3.24e-03 59_[+1(2.03e-08)]_27 chr1:179293400-179293900 9.48e-20 25_[+6(1.16e-05)]_3_[+2(5.16e-21)]_\ 13 chr7:83547438-83547938 1.52e-02 38_[+1(1.13e-07)]_48 chr2:232473341-232473841 3.11e-02 34_[+1(9.91e-08)]_52 chr5:109468665-109469165 2.13e-02 48_[-1(6.45e-08)]_38 chr6:28790284-28790784 3.17e-19 38_[+5(1.91e-26)]_21 chr6:80132934-80133434 8.80e-03 34_[-1(6.45e-08)]_52 chr3:156171780-156172280 5.51e-02 64_[+1(3.60e-07)]_22 chr7:20514344-20514844 1.32e-04 36_[-1(1.89e-07)]_50 chr10:62081489-62081989 8.65e-02 33_[+1(4.00e-07)]_53 chr17:13888002-13888502 4.34e-09 16_[-9(1.21e-08)]_3_[+1(8.42e-08)]_\ 45 chr18:70464637-70465137 1.83e-04 6_[+7(5.24e-05)]_17_[+1(1.07e-06)]_\ 33 chr3:169657316-169657816 2.00e-04 44_[-1(4.96e-07)]_42 chrX:81411454-81411954 1.07e-03 62_[+1(9.05e-09)]_24 chr10:61974516-61975016 7.53e-03 44_[+1(1.13e-07)]_42 chr6:118660214-118660714 2.19e-02 11_[+1(9.91e-08)]_75 chr2:63064165-63064665 1.67e-03 29_[+1(2.03e-08)]_57 chr8:60619566-60620066 1.61e-03 27_[-6(8.28e-05)]_11_[-1(7.99e-07)]_\ 32 chr5:146213416-146213916 1.67e-03 30_[-1(6.32e-07)]_56 chr10:18607476-18607976 6.03e-06 3_[+2(5.66e-06)]_6_[-1(1.89e-07)]_\ 34 chr9:87815973-87816473 2.61e-15 7_[-10(3.46e-18)]_12_[-1(1.55e-08)]_\ 25 chr10:48384517-48385017 9.35e-04 56_[-1(3.92e-08)]_30 chr5:140295372-140295872 1.26e-02 53_[+1(1.66e-06)]_33 chr5:86030695-86031195 1.68e-03 60_[+1(2.03e-08)]_26 chr5:110054175-110054675 8.49e-04 63_[+1(1.39e-07)]_23 chr19:57642377-57642877 4.34e-03 33_[+1(2.03e-08)]_53 chr12:120646970-12064747 1.01e-07 21_[+9(6.97e-07)]_12_[-1(1.16e-08)]_\ 31 chr17:26603645-26604145 7.92e-01 100 chr6:85600684-85601184 8.09e-03 48_[-1(4.96e-07)]_38 chr10:126208885-12620938 8.54e-03 38_[+1(2.33e-07)]_48 chr21:16420004-16420504 2.22e-02 68_[+1(9.91e-08)]_18 chr1:45875937-45876437 1.17e-02 39_[-1(5.82e-08)]_47 chr8:17495811-17496311 2.59e-02 30_[+1(3.03e-08)]_56 chr5:54249597-54250097 8.38e-04 54_[+1(4.79e-08)]_32 chr21:34543880-34544380 1.61e-02 25_[+1(2.54e-07)]_61 chr10:15409258-15409758 2.16e-17 26_[+3(1.28e-28)]_25 chr13:78802864-78803364 1.09e-15 32_[+1(2.97e-09)]_11_\ [+10(7.11e-18)]_1 chr4:82796906-82797406 4.92e-03 51_[+1(9.05e-09)]_35 chr3:99868283-99868783 7.61e-03 34_[+1(1.16e-08)]_52 chr5:77168823-77169323 1.35e-04 49_[-1(4.45e-07)]_37 chr12:65327036-65327536 7.81e-03 33_[+1(3.03e-08)]_53 chr2:178484585-178485085 9.57e-05 22_[+8(7.89e-05)]_26_[-1(5.82e-08)]_\ 18 chr5:10601228-10601728 3.09e-05 28_[-1(8.42e-08)]_13_[-1(2.60e-06)]_\ 31 chr18:45755939-45756439 3.90e-03 10_[+9(7.60e-05)]_17_[+1(2.03e-08)]_\ 37 chr7:112572660-112573160 6.47e-02 15_[-1(4.98e-05)]_2_[+1(2.96e-07)]_\ 55 chr5:81736003-81736503 7.00e-02 35_[-1(4.41e-05)]_8_[+1(1.07e-06)]_\ 29 chr5:41747187-41747687 2.24e-02 46_[+1(1.16e-08)]_40 chr5:125198472-125198972 1.29e-03 53_[-1(1.89e-07)]_33 chr10:21724692-21725192 2.80e-02 51_[-1(2.33e-07)]_35 chr12:121404675-12140517 3.28e-04 46_[+1(2.03e-08)]_40 chr1:80054149-80054649 2.64e-02 47_[-1(2.12e-07)]_39 chr2:165824993-165825493 3.58e-05 60_[-1(1.16e-08)]_26 chr12:65624481-65624981 2.68e-03 45_[+1(1.55e-08)]_41 chrUn_KI270466v1:230-730 5.81e-24 17_[+4(2.66e-23)]_2_[+7(2.66e-16)]_\ 2 chr1:78620121-78620621 1.97e-03 75_[-1(5.82e-08)]_11 chr10:87586167-87586667 1.66e-03 48_[+1(4.79e-08)]_38 chr14:49861990-49862490 1.67e-01 100 chrUn_KI270467v1:3139-36 2.13e-27 11_[+4(1.59e-25)]_3_[+7(6.11e-18)]_\ 7 chrUn_KI270467v1:2687-31 2.45e-24 [+4(1.38e-26)]_6_[+7(7.72e-14)]_15 chrUn_KI270467v1:2006-25 1.56e-23 18_[+4(1.07e-23)]_3_[+7(1.68e-15)] chr16:1271731-1272231 1.66e-05 1_[+1(7.88e-09)]_24_[+1(7.88e-09)]_\ 24_[+1(7.88e-09)]_9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************