# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 498 from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Dec 10 11:55:22 PST 2018)
#   negatives: 498 from /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF830.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Dec 10 11:55:22 PST 2018)
#        host: kali.stanford.edu
#        when: Mon Dec 10 12:39:59 PST 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.295 C 0.200 G 0.206 T 0.299


MOTIF VTGCCAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     VTGCCAR    YTGGCAB        265         58   4.7e-047   1.3e-042
#          GTGCCAA    TTGGCAC         91          9   4.0e-020   1.2e-015
#          GTGCCAG    CTGGCAC         71          7   1.1e-015   3.1e-011
#          CTGCCAA    TTGGCAG         62          8   1.9e-012   5.5e-008
#          ATGCCAA    TTGGCAT         57         15   1.3e-007   3.6e-003
#          ATGCCAG    CTGGCAT         26          8   1.2e-003   3.6e+001
#          CTGCCAG    CTGGCAG         34         14   2.2e-003   6.4e+001

letter-probability matrix: alength= 4 w= 7 nsites= 370 E= 1.3e-042
0.237838 0.270270 0.491892 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.618919 0.000000 0.381081 0.000000


MOTIF GCCAR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GCCAR      YTGGC        278        172   9.7e-012   2.7e-007
#            GCCAA      TTGGC        198        102   2.0e-011   5.6e-007
#            GCCAG      CTGGC        137         90   2.5e-004   6.9e+000

letter-probability matrix: alength= 4 w= 5 nsites= 407 E= 2.7e-007
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.621622 0.000000 0.378378 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 11.28 seconds