# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF792.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF792.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF792.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF792.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:21:24 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF792.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:21:24 PDT 2018)
#        host: surya
#        when: Thu May 10 19:08:57 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.235 C 0.262 G 0.271 T 0.231


MOTIF GTAWACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GTAWACA    TGTWTAC        109          7   5.1e-027   1.7e-022
#          GTATACA    TGTATAC         58          3   4.5e-015   1.5e-010
#          GTAAACA    TGTTTAC         52          4   2.0e-012   6.7e-008

letter-probability matrix: alength= 4 w= 7 nsites= 119 E= 1.7e-022
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.470588 0.000000 0.000000 0.529412
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATTTATK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATTTATK   MATAAATG         61          2   4.8e-017   1.6e-012
#         CATTTATT   AATAAATG         49          1   1.7e-014   5.5e-010
#         CATTTATG   CATAAATG         13          1   8.7e-004   2.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 1.6e-012
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.206349 0.793651


MOTIF GCRCCTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GCRCCTA    TAGGYGC         61          4   4.8e-015   1.5e-010
#          GCACCTA    TAGGTGC         36          2   1.7e-009   5.4e-005
#          GCGCCTA    TAGGCGC         27          2   6.3e-007   2.0e-002

letter-probability matrix: alength= 4 w= 7 nsites= 68 E= 1.5e-010
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.573529 0.000000 0.426471 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGTRTGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTRTGC   GCAYACAG         68         11   4.2e-012   1.4e-007
#         CTGTATGC   GCATACAG         32          0   1.5e-010   4.9e-006
#         CTGTGTGC   GCACACAG         36         11   1.3e-004   4.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 1.4e-007
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.433735 0.000000 0.566265 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCACTTW DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCACTTW   WAAGTGCT         27          1   8.2e-008   2.6e-003
#         AGCACTTA   TAAGTGCT         16          1   1.3e-004   4.0e+000
#         AGCACTTT   AAAGTGCT         11          0   4.7e-004   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.6e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.592593 0.000000 0.000000 0.407407


MOTIF AGCKGGGA DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCKGGGA   TCCCMGCT         20          0   8.1e-007   2.6e-002
#         AGCTGGGA   TCCCAGCT         13          0   1.1e-004   3.6e+000
#         AGCGGGGA   TCCCCGCT          7          0   7.7e-003   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.6e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.350000 0.650000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 27.00 seconds