Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
ACATAYA 7 ACATACA
GATTTCTB 8 GATTTCTC
AGCAGHAA 8 AGCAGAAA
AGTCTDAT 8 AGTCTTAT
ATAAATAA 8 ATAAATAA
CAAGRGAA 8 CAAGAGAA
GGGAWYC 7 GGGAATC
AGGCCAGR 8 AGGCCAGG
GTGACW 6 GTGACA
TTTTGARA 8 TTTTGAGA
GAGACYC 7 GAGACTC
AYTATCAG 8 ACTATCAG
AATRTGTC 8 AATATGTC
AARGTTTC 8 AAGGTTTC
ARTGGGAT 8 AATGGGAT
GCCTGYA 7 GCCTGCA
CCAGGAGA 8 CCAGGAGA
ACTTGWCA 8 ACTTGACA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.304 C 0.196 G 0.196 T 0.304

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GGGAWYC DREME-7 chr4 - 76830 76836 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr19 - 8715508 8715514 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr19 - 30029129 30029135 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr19 - 32302995 32303001 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr18 - 36229389 36229395 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr14 - 36782111 36782117 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr8 - 39050142 39050148 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr17 - 40760296 40760302 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr17 - 41386414 41386420 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chrX - 62774641 62774647 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr8 - 69173395 69173401 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr7 - 78247975 78247981 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr15 - 101945857 101945863 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr9 - 112367672 112367678 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr5 - 139342063 139342069 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr6 - 162934835 162934841 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr1 - 166464556 166464562 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr6 - 169061057 169061063 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr1 - 234872389 234872395 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr8 + 23032989 23032995 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr12 + 26267025 26267031 2.68e-05 0.346 gggaACC
GGGAWYC DREME-7 chr9 + 33325268 33325274 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr19 + 35882040 35882046 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr19 + 37371300 37371306 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr3 + 39302354 39302360 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr3 + 46840672 46840678 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr7 + 53214641 53214647 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr14 + 54824341 54824347 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr6 + 56172303 56172309 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr12 + 57111979 57111985 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr15 + 71084259 71084265 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr14 + 80867986 80867992 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr5 + 82607305 82607311 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr5 + 89893709 89893715 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr14 + 103105131 103105137 2.68e-05 0.346 GGGAACC
GGGAWYC DREME-7 chr4 + 129062887 129062893 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr9 + 135828827 135828833 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr2 + 186770477 186770483 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr2 + 222335078 222335084 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr1 + 231444232 231444238 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr1 + 240226316 240226322 2.68e-05 0.346 gggaacc
GGGAWYC DREME-7 chr1 - 6404891 6404897 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr8 - 10751686 10751692 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr8 - 11510974 11510980 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chrX - 14564236 14564242 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr16 - 19328581 19328587 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr16 - 23830467 23830473 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr13 - 29987534 29987540 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr22 - 30057331 30057337 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr11 - 31731713 31731719 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr15 - 51527126 51527132 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chrX - 58328567 58328573 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr4 - 61185337 61185343 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chrX - 62675614 62675620 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr15 - 72437943 72437949 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr11 - 76776682 76776688 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr14 - 81036242 81036248 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr9 - 90651432 90651438 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr3 - 129929602 129929608 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr5 - 139354395 139354401 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr8 - 143752349 143752355 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr8 - 144031393 144031399 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr4 - 166377838 166377844 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr3 - 184502327 184502333 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr3 - 188503816 188503822 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr1 + 6404890 6404896 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chrX + 14564235 14564241 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr20 + 18299715 18299721 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr9 + 26938172 26938178 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr13 + 29987533 29987539 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr15 + 32935461 32935467 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr9 + 35010523 35010529 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr19 + 35141169 35141175 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr19 + 38066253 38066259 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr17 + 40760537 40760543 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr22 + 42042161 42042167 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr19 + 43901360 43901366 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chr16 + 50369125 50369131 5.37e-05 0.346 gggATCC
GGGAWYC DREME-7 chr12 + 57112345 57112351 5.37e-05 0.346 GGGATCC
GGGAWYC DREME-7 chrX + 58328566 58328572 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr10 + 59923087 59923093 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chrX + 62675613 62675619 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr1 + 81489736 81489742 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr14 + 90768083 90768089 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr7 + 93406184 93406190 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr11 + 129226389 129226395 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr8 + 134178763 134178769 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr6 + 158577710 158577716 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr6 + 166806401 166806407 5.37e-05 0.346 gggatcc
GGGAWYC DREME-7 chr20 - 2361211 2361217 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr20 - 2361449 2361455 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr9 - 5315725 5315731 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr8 - 12783741 12783747 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr12 - 15458236 15458242 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr11 - 15526940 15526946 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr1 - 17227650 17227656 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr20 - 18299481 18299487 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr22 - 20496519 20496525 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr12 - 27477318 27477324 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr10 - 27642462 27642468 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr19 - 30029356 30029362 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr19 - 37452924 37452930 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr19 - 41310415 41310421 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr22 - 42042054 42042060 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr12 - 42824516 42824522 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr21 - 45603470 45603476 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr21 - 45603688 45603694 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr12 - 46027377 46027383 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr15 - 50971328 50971334 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr3 - 51173695 51173701 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chrX - 62704421 62704427 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr2 - 66154159 66154165 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr14 - 66677976 66677982 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr7 - 67154571 67154577 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr12 - 67838782 67838788 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr12 - 71360039 71360045 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr6 - 71559199 71559205 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr15 - 73631892 73631898 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr5 - 89893540 89893546 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr10 - 91919859 91919865 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr14 - 101209811 101209817 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr9 - 105735665 105735671 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr7 - 106736066 106736072 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr6 - 120478862 120478868 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr6 - 125111441 125111447 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr7 - 135088753 135088759 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr7 - 143236637 143236643 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr6 - 155770549 155770555 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr2 - 169976639 169976645 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr3 - 193955009 193955015 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr9 + 778156 778162 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr8 + 11510640 11510646 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr1 + 16493357 16493363 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr8 + 18339519 18339525 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr9 + 20970079 20970085 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr19 + 35184422 35184428 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr13 + 41925038 41925044 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr22 + 42042212 42042218 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr5 + 53694700 53694706 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr12 + 55877765 55877771 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr2 + 63273021 63273027 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr5 + 67345008 67345014 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr12 + 71321967 71321973 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr12 + 71360159 71360165 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr7 + 72657610 72657616 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr4 + 79121513 79121519 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr14 + 81036360 81036366 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr16 + 81049821 81049827 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr10 + 85064862 85064868 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr6 + 85829149 85829155 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr1 + 118578446 118578452 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr7 + 122103235 122103241 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr11 + 122538223 122538229 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr4 + 124071086 124071092 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr4 + 124071267 124071273 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr3 + 126303749 126303755 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr4 + 127313737 127313743 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr9 + 135985447 135985453 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr7 + 150703385 150703391 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr1 + 155245049 155245055 9.52e-05 0.346 GGGAATC
GGGAWYC DREME-7 chr1 + 172367125 172367131 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr1 + 181040857 181040863 9.52e-05 0.346 gggaatc
GGGAWYC DREME-7 chr1 + 234337178 234337184 9.52e-05 0.346 gggaatc
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_13 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif GGGAWYC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_13
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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