# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:18:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF791.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:18:25 PDT 2018) # host: wotan # when: Thu May 10 19:38:41 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.318 C 0.178 G 0.181 T 0.323 MOTIF ACATAYA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ACATAYA TRTATGT 220 25 4.2e-049 1.0e-044 # ACATACA TGTATGT 170 9 1.8e-045 4.5e-041 # ACATATA TATATGT 53 17 5.4e-006 1.3e-001 letter-probability matrix: alength= 4 w= 7 nsites= 235 E= 1.0e-044 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.774468 0.000000 0.225532 1.000000 0.000000 0.000000 0.000000 MOTIF GATTTCTB DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GATTTCTB VAGAAATC 172 9 3.6e-046 8.7e-042 # GATTTCTC GAGAAATC 137 3 7.2e-041 1.7e-036 # GATTTCTG CAGAAATC 17 1 6.5e-005 1.6e+000 # GATTTCTT AAGAAATC 26 6 2.3e-004 5.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 180 E= 8.7e-042 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.761111 0.094444 0.144444 MOTIF AGCAGHAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AGCAGHAA TTDCTGCT 142 15 9.2e-031 2.2e-026 # AGCAGAAA TTTCTGCT 91 9 8.0e-020 1.9e-015 # AGCAGCAA TTGCTGCT 55 5 1.8e-012 4.2e-008 # AGCAGTAA TTACTGCT 11 1 3.1e-003 7.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 157 E= 2.2e-026 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.579618 0.350318 0.000000 0.070064 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTCTDAT DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGTCTDAT ATHAGACT 114 6 1.4e-029 3.2e-025 # AGTCTTAT ATAAGACT 52 1 2.0e-015 4.7e-011 # AGTCTAAT ATTAGACT 41 0 2.2e-013 5.3e-009 # AGTCTGAT ATCAGACT 21 5 1.1e-003 2.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 114 E= 3.2e-025 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.359649 0.000000 0.184211 0.456140 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ATAAATAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ATAAATAA TTATTTAT 133 22 2.1e-023 5.0e-019 # ATAAATAA TTATTTAT 133 22 2.1e-023 5.0e-019 letter-probability matrix: alength= 4 w= 8 nsites= 655 E= 5.0e-019 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAAGRGAA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAAGRGAA TTCYCTTG 83 10 8.5e-017 2.0e-012 # CAAGAGAA TTCTCTTG 56 7 2.4e-011 5.6e-007 # CAAGGGAA TTCCCTTG 29 3 9.7e-007 2.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 2.0e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.659091 0.000000 0.340909 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGGAWYC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GGGAWYC GRWTCCC 91 13 4.5e-017 1.0e-012 # GGGAATC GATTCCC 38 5 7.9e-008 1.8e-003 # GGGATCC GGATCCC 26 2 1.2e-006 2.8e-002 # GGGATTC GAATCCC 25 5 1.4e-004 3.2e+000 # GGGAACC GGTTCCC 17 4 3.4e-003 7.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 91 E= 1.0e-012 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.516484 0.000000 0.000000 0.483516 0.000000 0.472527 0.000000 0.527473 0.000000 1.000000 0.000000 0.000000 MOTIF AGGCCAGR DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AGGCCAGR YCTGGCCT 56 1 1.1e-016 2.5e-012 # AGGCCAGG CCTGGCCT 33 1 1.3e-009 3.1e-005 # AGGCCAGA TCTGGCCT 23 0 9.6e-008 2.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 2.5e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.410714 0.000000 0.589286 0.000000 MOTIF GTGACW DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GTGACW WGTCAC 122 33 3.8e-015 8.7e-011 # GTGACA TGTCAC 67 15 7.9e-010 1.8e-005 # GTGACT AGTCAC 59 18 7.3e-007 1.7e-002 letter-probability matrix: alength= 4 w= 6 nsites= 129 E= 8.7e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.527132 0.000000 0.000000 0.472868 MOTIF TTTTGARA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TTTTGARA TYTCAAAA 78 12 3.7e-014 8.5e-010 # TTTTGAGA TCTCAAAA 57 9 2.2e-010 4.9e-006 # TTTTGAAA TTTCAAAA 21 3 1.2e-004 2.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 8.5e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.269231 0.000000 0.730769 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGACYC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GAGACYC GRGTCTC 49 2 2.3e-013 5.2e-009 # GAGACTC GAGTCTC 37 2 8.5e-010 1.9e-005 # GAGACCC GGGTCTC 13 0 1.1e-004 2.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 5.2e-009 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.260000 0.000000 0.740000 0.000000 1.000000 0.000000 0.000000 MOTIF AYTATCAG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AYTATCAG CTGATART 39 1 2.0e-011 4.6e-007 # ACTATCAG CTGATAGT 26 1 1.6e-007 3.6e-003 # ATTATCAG CTGATAAT 13 0 1.1e-004 2.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 4.6e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AATRTGTC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AATRTGTC GACAYATT 33 1 1.3e-009 3.0e-005 # AATATGTC GACATATT 19 1 1.8e-005 4.0e-001 # AATGTGTC GACACATT 14 0 5.7e-005 1.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.0e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.575758 0.000000 0.424242 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AARGTTTC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AARGTTTC GAAACYTT 39 3 1.6e-009 3.7e-005 # AAGGTTTC GAAACCTT 24 0 4.7e-008 1.1e-003 # AAAGTTTC GAAACTTT 15 3 3.6e-003 8.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 3.7e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.384615 0.000000 0.615385 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ARTGGGAT DREME-15 # Word RC Word Pos Neg P-value E-value # BEST ARTGGGAT ATCCCAYT 38 3 3.1e-009 7.0e-005 # AATGGGAT ATCCCATT 28 3 1.8e-006 4.0e-002 # AGTGGGAT ATCCCACT 10 0 9.4e-004 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 7.0e-005 1.000000 0.000000 0.000000 0.000000 0.736842 0.000000 0.263158 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GCCTGYA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST GCCTGYA TRCAGGC 32 2 2.4e-008 5.3e-004 # GCCTGCA TGCAGGC 19 0 1.7e-006 3.7e-002 # GCCTGTA TACAGGC 13 2 3.5e-003 7.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 32 E= 5.3e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.593750 0.000000 0.406250 1.000000 0.000000 0.000000 0.000000 MOTIF CCAGGAGA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CCAGGAGA TCTCCTGG 22 0 2.0e-007 4.4e-003 # CCAGGAGA TCTCCTGG 22 0 2.0e-007 4.4e-003 letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.4e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACTTGWCA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST ACTTGWCA TGWCAAGT 23 1 1.2e-006 2.7e-002 # ACTTGACA TGTCAAGT 15 1 2.4e-004 5.3e+000 # ACTTGTCA TGACAAGT 8 0 3.8e-003 8.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.652174 0.000000 0.000000 0.347826 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 224.56 seconds