Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GTGTGTGTGTGTGTGT 16 GTGTGTGTGTGTGTGT
ACACACACACACACACACAC 20 ACACACACACACACACACAC
CCTGTAATCCCAGCWMYTYGGGAGGCTGAG 30 CCTGTAATCCCAGCTACTTGGGAGGCTGAG
SWTCRASACCAGCCTSRCCAACATSRTSAAM 31 GTTCGAGACCAGCCTGGCCAACATGGTGAAA
CACACAYACACA 12 CACACACACACA
GAGRGAGNGRGAGAGDGVGRGR 22 GAGGGAGGGGGAGAGAGAGAGG
YGHGCCACCACGCCCGGCTAAT 22 TGCGCCACCACGCCCGGCTAAT
CATCAYCAYCAHCATCACCATC 22 CATCACCACCACCATCACCATC
CACACACHACACACAC 16 CACACACTACACACAC
AGRAGAATSGCTTGAACSCGGGAGGCGGRGG 31 AGGAGAATGGCTTGAACCCGGGAGGCGGAGG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.199 C 0.301 G 0.301 T 0.199


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 - 31095181 31095202 2.47e-13 8.11e-08 TGTGCCACCACGCCCGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr20 - 3160196 3160217 4.34e-13 8.11e-08 TGCGCCACCACGCCCGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 150877111 150877132 4.34e-13 8.11e-08 TGCGCCACCACGCCCGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 44259644 44259665 6.78e-13 9.5e-08 tgtgccaccacgcccagctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 + 3263513 3263534 1.88e-12 1.85e-07 cgcgccaccacgcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 28790499 28790520 2.01e-12 1.85e-07 TGCGCCACCACGCCTGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 50134374 50134395 2.32e-12 1.85e-07 TGTGCCACCACACCCAGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr22 + 37844715 37844736 3.52e-12 2.46e-07 cgcgccaccacgcccagctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 39502408 39502429 6.96e-12 4.33e-07 cgtgccaccacgcctggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 999958 999979 1.32e-11 6.18e-07 cccgccaccacgcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr17 + 1259103 1259124 1.32e-11 6.18e-07 cccgccaccacgcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 49495779 49495800 1.32e-11 6.18e-07 cccgccaccacgcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr4 + 88456607 88456628 2.24e-11 8.94e-07 cccgccaccacgcccagctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 146038533 146038554 2.24e-11 8.94e-07 cccgccaccacgcccagctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 128782664 128782685 2.99e-11 1.12e-06 CCTGCCACCACACCCGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr7 - 74079694 74079715 4.07e-11 1.43e-06 CCTGCCACCACGCCTGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 30907665 30907686 6.46e-11 2.01e-06 cccaccaccacgcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 107027980 107028001 6.46e-11 2.01e-06 CCCACCACCACGCCCGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 37211038 37211059 9.78e-11 2.88e-06 agcgccaccacacccagctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr14 + 34540011 34540032 1.09e-10 3.04e-06 tacaccaccacgcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr9 + 109244584 109244605 1.85e-10 4.94e-06 cgtgccaccacaccccgctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 40404084 40404105 3.02e-10 7.7e-06 tgagccaccgcgcccggccAAA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr14 + 34540143 34540164 3.79e-10 9.24e-06 tgagccaccgctcccggccAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 3988294 3988315 4.62e-10 1.08e-05 tgagccaccgcgcccggccAAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 - 30598582 30598603 5.22e-10 1.17e-05 CCTGCCACCATGCCCAGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 48717141 48717162 6.94e-10 1.49e-05 TGAACCACCGCGCCCGGCCCAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 161765027 161765048 7.38e-10 1.53e-05 cccgccaccacgcctggctaac
YGHGCCACCACGCCCGGCTAAT MEME-7 chr14 - 103076084 103076105 8.97e-10 1.74e-05 CCCACCACCACGCCAGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr9 - 131373774 131373795 9.03e-10 1.74e-05 TGAGCCACCACGCCCGGCCTAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr17 - 4143375 4143396 1.63e-09 3.05e-05 CGCGCCCCCACGTCCGGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 59814202 59814223 1.74e-09 3.15e-05 tgtgccaccacccccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 32130738 32130759 2.5e-09 4.38e-05 TGAGCCACCGCGCCCGGCCCAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 31197367 31197388 2.68e-09 4.55e-05 cctacgaccacacccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr18 - 54269145 54269166 3.17e-09 5.23e-05 TGCGCCATCACGCCCAGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr2 + 28894261 28894282 3.37e-09 5.31e-05 tgagccaccgcgcccagcccac
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 39073546 39073567 3.51e-09 5.31e-05 tgagccaccgcacctggcttag
YGHGCCACCACGCCCGGCTAAT MEME-7 chr20 + 62301788 62301809 3.51e-09 5.31e-05 tgtgccagcatacctggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 + 3263647 3263668 3.63e-09 5.35e-05 tgagccaccgcgcccggccCTT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 - 30598448 30598469 3.79e-09 5.45e-05 TGAGCCACCGCTCCCAGCCAAA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 36797172 36797193 4.57e-09 6.24e-05 cccgccaccacgtctggttaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr22 + 37844848 37844869 4.57e-09 6.24e-05 tgagccaccgcgcccggccTTT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 - 31095046 31095067 5.13e-09 6.85e-05 TGAGCCACCGTGCCCGGCCAAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 35702008 35702029 5.71e-09 7.31e-05 tcccccaccacgcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 150876977 150876998 5.74e-09 7.31e-05 CGAGCCACCGCGCCCAGCCTAA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 39033322 39033343 5.95e-09 7.4e-05 CGTGCTACCACGCCCAGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 107027845 107027866 6.64e-09 8.09e-05 TGAGCCACCGCGCCCGGCCATC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr17 - 4143241 4143262 6.94e-09 8.27e-05 TGAGCCACCGCGCCTGGCCCTT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 35702143 35702164 7.71e-09 8.99e-05 tgagccaccacgtccggccCCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 55829294 55829315 9.23e-09 0.000106 CGCGCCACCACGCCTGGCGAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 35947760 35947781 1.19e-08 0.000134 cctgccaccacgcccgactaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 3988158 3988179 1.75e-08 0.000192 cctgccaccacacccgggtaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 2945529 2945550 1.79e-08 0.000192 TGAACCACCGCGCCCGGCCGAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr2 + 28894126 28894147 2.15e-08 0.000227 ccaaccaccaagcccggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 161765161 161765182 2.27e-08 0.000236 tgagccaccgcgcccggccTTA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr9 - 131373908 131373929 2.42e-08 0.000243 CCCGCCACCGCGCCCTGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr3 + 58335155 58335176 2.44e-08 0.000243 tgagccaccacacctggccCTG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 41262754 41262775 2.47e-08 0.000243 TGAGCCACCGCGCCCGGCCCCA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr7 - 74079560 74079581 3.01e-08 0.000291 TGAGTCACCACTCCCGGCCAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr17 - 75905300 75905321 3.16e-08 0.0003 TGAGCCACCGCGCCCAGCCCTC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr2 + 28894403 28894424 3.27e-08 0.000306 tgagccaccgcgcccggccCCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr17 + 1259237 1259258 3.94e-08 0.000356 tgagccaccgcgcccggccTGG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 2096024 2096045 3.94e-08 0.000356 tgagccaccgcgcccggccTCG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 59814337 59814358 4.7e-08 0.000418 tgagccacctcgcccagccGGT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr3 - 169763289 169763310 5.08e-08 0.000445 CACACCACCATACCCGGCTGAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr22 + 26756555 26756576 7.11e-08 0.000612 cgagccaccgcgcctggccCTC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 49817773 49817794 7.3e-08 0.000619 CCCGCAACCACGCCCCGCTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 41262889 41262910 7.4e-08 0.000619 CCCGCCACCATGCCCGACTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 120292317 120292338 7.71e-08 0.000635 TGAGCCACCGCGCCCAGCCGTG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 1000091 1000112 1.38e-07 0.00112 tgaaccaccgcgcccggcAAGT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 55216311 55216332 1.89e-07 0.00151 ttggccaccacgcctggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 21659050 21659071 5.31e-07 0.00419 tgcaccatcaggcccagctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 39033187 39033208 7.76e-07 0.00604 TGAGTCACCGCACCCAGCCACA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 37211178 37211199 7.94e-07 0.00609 tgagccaccgcctccggcTGTT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 39502545 39502566 8.15e-07 0.00615 tgagccaccatgcttggcTGAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 44259778 44259799 8.24e-07 0.00615 tgagccactgcacctggccCCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr14 + 24114904 24114925 1.13e-06 0.00831 CCTGCGACCGCTCCTGGCTGGT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 49817638 49817659 1.29e-06 0.00936 TGAGCCACCGCGCCGGGCCCGC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 31197502 31197523 1.3e-06 0.00936 tgagccaccgcgctcggcTGTC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 30907800 30907821 1.72e-06 0.0122 tgagtcaccgcgcccggccTGG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 49495914 49495935 1.81e-06 0.0127 tgagccaccgcgctaggccGAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr10 - 87095780 87095801 2.07e-06 0.0143 TGAGCCACCGCGCCGGGCCGGA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr7 + 6448488 6448509 2.16e-06 0.0147 tgaaccactgcgcccggccCTG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 55829161 55829182 2.29e-06 0.0155 TGAGCCACGGTGCCCGGCCACC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 21659185 21659206 2.93e-06 0.0195 tgaaccacagtgcccggccGAA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 32130854 32130875 3.22e-06 0.0212 CCCGCCATCACGCCGAGCTATT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 111990398 111990419 3.52e-06 0.0229 CCCACCCCCAAACCCAGCTCAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 39073411 39073432 4.72e-06 0.0304 tccatcactatgcctggctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr4 + 88456745 88456766 4.94e-06 0.0315 tgaatcaccgcgcccggccGCG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr20 - 3160060 3160081 5.61e-06 0.0353 TGAGCCACCGCGCCGGGACTAA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 + 8698108 8698129 6.79e-06 0.0423 TGTGCGAGGACGCCCGGCCAGC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 10333120 10333141 7.4e-06 0.0455 CGCCCCCCCACGTCCCGCTCTT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 39402790 39402811 7.71e-06 0.0469 ACAGCCAACACTTCCGGCCTAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr5 + 43192595 43192616 9.03e-06 0.0541 CGTACCCCCACACCTGCCCAGG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 40610116 40610137 9.18e-06 0.0541 TCCGCCcccacgcccaggcccc
YGHGCCACCACGCCCGGCTAAT MEME-7 chr15 - 83011197 83011218 9.18e-06 0.0541 CCTACCCGCACTCCCAGTCCAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 28649001 28649022 9.46e-06 0.0552 CGCGCCACCACGCACGTATAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 146038666 146038687 9.73e-06 0.0562 tgagccatcgcccccggccaga
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 55216446 55216467 1.16e-05 0.0664 tgagccaccacgcctgCCGCGA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 235505149 235505170 1.18e-05 0.0669 TCTCCCAGCTCGCCCGGCTCCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 39320352 39320373 1.34e-05 0.0752 CGAGCGGGCACACCCGGCTCCA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr20 + 62301927 62301948 1.38e-05 0.0759 tgagccaccgcgcctgAGCCCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 43182028 43182049 1.39e-05 0.0759 CGCGCCCCCACGCCCCTCTTCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr14 - 24114748 24114769 1.4e-05 0.0759 CCCGCCCCCTTGGCCAGCCAAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr17 - 61412625 61412646 1.48e-05 0.0798 TGTGCCTCCGTGCCCCGCTTGC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 49495592 49495613 1.69e-05 0.0903 tgagccaccgagcccgtttttt
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 84912935 84912956 1.83e-05 0.0966 CCAGCCTGCGCTCCTGGCTACC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr9 - 135967746 135967767 1.95e-05 0.102 CCCACCACCTCGCCCCTCCAGG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr7 + 6448357 6448378 2.35e-05 0.12 cgcgccaccacggctaattttt
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 32130548 32130569 2.36e-05 0.12 CGCGCCACCATGACCTACTAAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr11 - 65112384 65112405 2.37e-05 0.12 TGCGCCTCCGCACCCCGTCCTC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 + 132710544 132710565 2.38e-05 0.12 tccgcccctgcacccagcctcc
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 35899760 35899781 2.6e-05 0.13 CGAGCCACCTCCTCCCGCCCCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr22 + 24244172 24244193 2.72e-05 0.135 CCCACGAGCACACCCTGCCACC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 + 88785768 88785789 2.85e-05 0.14 CCGGCCACCGCGCGCGGCTTTG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 6280608 6280629 2.9e-05 0.141 ctcgccattatgcccagctaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 31652171 31652192 2.97e-05 0.143 CGCGCACGCGCGCCACGCCCAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 - 88812500 88812521 2.98e-05 0.143 TGCGCGCCCTGGCCTGGCCACA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 35694328 35694349 3.09e-05 0.146 TGAGTCACTGTGCCTGGCTGAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 - 527078 527099 3.15e-05 0.148 TAAACGGCCACGCCGGGCTCAA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr17 + 79839866 79839887 3.23e-05 0.149 TCCGCCGCCGCTCCCAGTTGCA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr4 + 182144325 182144346 3.23e-05 0.149 CGGGCCTCCTCACCTGGCCCTT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 37779436 37779457 3.27e-05 0.15 TCCACCACCCCGGCTGGTTTAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 29237112 29237133 3.45e-05 0.157 ACAAACAGCACTCCCGGCCAGG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 + 4254036 4254057 3.5e-05 0.158 CCCGCCCCCAAGCCACGCCTCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 146038256 146038277 3.8e-05 0.17 CGAGCCACCACGTCGGCCTGGA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 143450647 143450668 3.84e-05 0.17 TTCGCCTCCATACCCAGCCACC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 40348294 40348315 4.05e-05 0.179 AGTCCCACCACCCCCGGCCCGC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 + 30894450 30894471 4.12e-05 0.18 TGTCCGCCCTCGCCAGGCTGTT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 57046466 57046487 4.22e-05 0.182 CGCGCGACCGCGCCGCGCGACT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 6689362 6689383 4.25e-05 0.182 TGCAGCACCACTTCCGGGTGAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 36797860 36797881 4.26e-05 0.182 TGCAACAGAACACCTGGCTAGA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 12782582 12782603 4.7e-05 0.199 CGCACGACCGCGTCGGGTTCCA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr10 + 17201747 17201768 4.89e-05 0.206 TCTCCTACCGCTCCAGGCTCAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr10 - 91609029 91609050 4.99e-05 0.208 AGTGTCACCTCCTCCGGCCAGT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr4 - 82900850 82900871 5.15e-05 0.214 AGAGGCCGCGCTCCCGGCTGAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 122095167 122095188 5.21e-05 0.214 CACACCACCACACCGCACTCAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr15 + 72117901 72117922 5.22e-05 0.214 TCCCCCGCCGCACCCCGCCCAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 40610122 40610143 5.38e-05 0.218 cccacgcccaggccccgccctt
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 36797306 36797327 5.57e-05 0.221 tgagccgccgcgctcggccGGC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 33795570 33795591 5.62e-05 0.221 ACTGCGCCCCCGCCTGGCTCCA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 47743265 47743286 5.62e-05 0.221 TGAGTCACCAGGCCTCGCTGCA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr7 - 74079875 74079896 5.62e-05 0.221 TGAGCCACTGAGTCCGGCCTGA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 12782639 12782660 5.63e-05 0.221 CGCACGCGCGCACGCAGCCAGT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 + 232630540 232630561 6.23e-05 0.242 GGCGCGACCCCACCCGGCCCTC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr7 + 25856847 25856868 6.33e-05 0.244 ACCACCAGCGCTTCTGACTCAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 + 11074 11095 6.35e-05 0.244 agtggcagcacgcccgcctgct
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 84298743 84298764 6.54e-05 0.248 TCTGCCCCCACTCCACTCCACA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 40610540 40610561 6.55e-05 0.248 AGTGCCACCGCGTGCCGCCGCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 39320512 39320533 6.75e-05 0.253 CGCGCGACAGCGCCCAGACACA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 + 85643096 85643117 6.78e-05 0.253 accaccaccaccACTAGCCTCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 10417006 10417027 7.15e-05 0.265 CGAAGCCCCGCCCCTAGCCCAA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 225653668 225653689 7.38e-05 0.271 CGCGCGAGGGCACCCGGCCGCG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 40610171 40610192 7.4e-05 0.271 ccctcccccaggccccgccACT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr5 + 173284675 173284696 7.76e-05 0.279 tccatcccctcatccatccaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr5 + 173284798 173284819 7.76e-05 0.279 tccatcccctcatccatccaat
YGHGCCACCACGCCCGGCTAAT MEME-7 chr9 + 124856106 124856127 7.8e-05 0.279 ACAGCCGCCTCTCCAGGCTTCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 247070 247091 7.82e-05 0.279 agtggcagcacacccgcctgct
YGHGCCACCACGCCCGGCTAAT MEME-7 chr11 - 72238182 72238203 7.88e-05 0.279 TCCGCCCCCGGGGCCAGCCCCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr20 - 63177253 63177274 7.92e-05 0.279 TGCACCCACGCGCGCAGCCCCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 38403450 38403471 8.02e-05 0.28 AGCACCTCCGCGCCCGCCTCTC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr16 - 981172 981193 8.04e-05 0.28 GCAGCGCCCAGGCCCAGCTCGT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr12 - 46384045 46384066 8.15e-05 0.28 TGCACCCCCGCGTCCCTCCTTG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 163413687 163413708 8.15e-05 0.28 TCGGCCGGCGCGCCCGGCTCCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 5309161 5309182 8.21e-05 0.28 CTCACCACCAGAGCCAGCCAAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 53651869 53651890 8.56e-05 0.29 TACAGCCCCGCGACCGGCCAGT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 53554293 53554314 8.58e-05 0.29 TGTGCGACCAGACCCCGACACA
YGHGCCACCACGCCCGGCTAAT MEME-7 chr15 + 83208208 83208229 8.67e-05 0.291 CCCACGCCCACCTCCCGCTGAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr22 + 21001975 21001996 8.94e-05 0.298 CCAGCCGCCGCTCCTCCCCAAG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 + 41859822 41859843 9.11e-05 0.302 ACTACTCCCACTTCCGGCCAGG
YGHGCCACCACGCCCGGCTAAT MEME-7 chr22 - 49975863 49975884 9.18e-05 0.302 TCTGCCACCACACACACCACAC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr15 + 75625741 75625762 9.37e-05 0.307 CCTCCCCCCGCCCCCAGCTGCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr5 - 139341670 139341691 9.54e-05 0.31 CGCGCCCCTACGGCCGGCTGCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 462081 462102 9.59e-05 0.31 CGCGACCGCGCGCCTCGCTCCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr6 - 28790365 28790386 9.68e-05 0.311 TAAGACACAGCGCTCGGCTGAT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr2 - 230864477 230864498 9.76e-05 0.311 CCTGTCCCCACGCCCCCCTCCT
YGHGCCACCACGCCCGGCTAAT MEME-7 chr19 - 461959 461980 9.79e-05 0.311 CCTGCCAGCGCGTCCCGGCCCC
YGHGCCACCACGCCCGGCTAAT MEME-7 chr9 + 11506 11527 9.89e-05 0.312 actggcagcacgcccgcctgct
YGHGCCACCACGCCCGGCTAAT MEME-7 chr1 - 25998250 25998271 9.91e-05 0.312 CGCACGACCACGCGGGGCTGGA

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif YGHGCCACCACGCCCGGCTAAT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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