Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GTGTGTGTGTGTGTGT | 16 | GTGTGTGTGTGTGTGT |
ACACACACACACACACACAC | 20 | ACACACACACACACACACAC |
CCTGTAATCCCAGCWMYTYGGGAGGCTGAG | 30 | CCTGTAATCCCAGCTACTTGGGAGGCTGAG |
SWTCRASACCAGCCTSRCCAACATSRTSAAM | 31 | GTTCGAGACCAGCCTGGCCAACATGGTGAAA |
CACACAYACACA | 12 | CACACACACACA |
GAGRGAGNGRGAGAGDGVGRGR | 22 | GAGGGAGGGGGAGAGAGAGAGG |
YGHGCCACCACGCCCGGCTAAT | 22 | TGCGCCACCACGCCCGGCTAAT |
CATCAYCAYCAHCATCACCATC | 22 | CATCACCACCACCATCACCATC |
CACACACHACACACAC | 16 | CACACACTACACACAC |
AGRAGAATSGCTTGAACSCGGGAGGCGGRGG | 31 | AGGAGAATGGCTTGAACCCGGGAGGCGGAGG |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.199 C 0.301 G 0.301 T 0.199
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | - | 31095181 | 31095202 | 2.47e-13 | 8.11e-08 | TGTGCCACCACGCCCGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr20 | - | 3160196 | 3160217 | 4.34e-13 | 8.11e-08 | TGCGCCACCACGCCCGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 150877111 | 150877132 | 4.34e-13 | 8.11e-08 | TGCGCCACCACGCCCGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 44259644 | 44259665 | 6.78e-13 | 9.5e-08 | tgtgccaccacgcccagctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | + | 3263513 | 3263534 | 1.88e-12 | 1.85e-07 | cgcgccaccacgcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 28790499 | 28790520 | 2.01e-12 | 1.85e-07 | TGCGCCACCACGCCTGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 50134374 | 50134395 | 2.32e-12 | 1.85e-07 | TGTGCCACCACACCCAGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr22 | + | 37844715 | 37844736 | 3.52e-12 | 2.46e-07 | cgcgccaccacgcccagctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 39502408 | 39502429 | 6.96e-12 | 4.33e-07 | cgtgccaccacgcctggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 999958 | 999979 | 1.32e-11 | 6.18e-07 | cccgccaccacgcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr17 | + | 1259103 | 1259124 | 1.32e-11 | 6.18e-07 | cccgccaccacgcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 49495779 | 49495800 | 1.32e-11 | 6.18e-07 | cccgccaccacgcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr4 | + | 88456607 | 88456628 | 2.24e-11 | 8.94e-07 | cccgccaccacgcccagctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 146038533 | 146038554 | 2.24e-11 | 8.94e-07 | cccgccaccacgcccagctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 128782664 | 128782685 | 2.99e-11 | 1.12e-06 | CCTGCCACCACACCCGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr7 | - | 74079694 | 74079715 | 4.07e-11 | 1.43e-06 | CCTGCCACCACGCCTGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 30907665 | 30907686 | 6.46e-11 | 2.01e-06 | cccaccaccacgcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 107027980 | 107028001 | 6.46e-11 | 2.01e-06 | CCCACCACCACGCCCGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 37211038 | 37211059 | 9.78e-11 | 2.88e-06 | agcgccaccacacccagctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr14 | + | 34540011 | 34540032 | 1.09e-10 | 3.04e-06 | tacaccaccacgcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr9 | + | 109244584 | 109244605 | 1.85e-10 | 4.94e-06 | cgtgccaccacaccccgctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 40404084 | 40404105 | 3.02e-10 | 7.7e-06 | tgagccaccgcgcccggccAAA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr14 | + | 34540143 | 34540164 | 3.79e-10 | 9.24e-06 | tgagccaccgctcccggccAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 3988294 | 3988315 | 4.62e-10 | 1.08e-05 | tgagccaccgcgcccggccAAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | - | 30598582 | 30598603 | 5.22e-10 | 1.17e-05 | CCTGCCACCATGCCCAGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 48717141 | 48717162 | 6.94e-10 | 1.49e-05 | TGAACCACCGCGCCCGGCCCAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 161765027 | 161765048 | 7.38e-10 | 1.53e-05 | cccgccaccacgcctggctaac |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr14 | - | 103076084 | 103076105 | 8.97e-10 | 1.74e-05 | CCCACCACCACGCCAGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr9 | - | 131373774 | 131373795 | 9.03e-10 | 1.74e-05 | TGAGCCACCACGCCCGGCCTAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr17 | - | 4143375 | 4143396 | 1.63e-09 | 3.05e-05 | CGCGCCCCCACGTCCGGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 59814202 | 59814223 | 1.74e-09 | 3.15e-05 | tgtgccaccacccccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 32130738 | 32130759 | 2.5e-09 | 4.38e-05 | TGAGCCACCGCGCCCGGCCCAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 31197367 | 31197388 | 2.68e-09 | 4.55e-05 | cctacgaccacacccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr18 | - | 54269145 | 54269166 | 3.17e-09 | 5.23e-05 | TGCGCCATCACGCCCAGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr2 | + | 28894261 | 28894282 | 3.37e-09 | 5.31e-05 | tgagccaccgcgcccagcccac |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 39073546 | 39073567 | 3.51e-09 | 5.31e-05 | tgagccaccgcacctggcttag |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr20 | + | 62301788 | 62301809 | 3.51e-09 | 5.31e-05 | tgtgccagcatacctggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | + | 3263647 | 3263668 | 3.63e-09 | 5.35e-05 | tgagccaccgcgcccggccCTT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | - | 30598448 | 30598469 | 3.79e-09 | 5.45e-05 | TGAGCCACCGCTCCCAGCCAAA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 36797172 | 36797193 | 4.57e-09 | 6.24e-05 | cccgccaccacgtctggttaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr22 | + | 37844848 | 37844869 | 4.57e-09 | 6.24e-05 | tgagccaccgcgcccggccTTT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | - | 31095046 | 31095067 | 5.13e-09 | 6.85e-05 | TGAGCCACCGTGCCCGGCCAAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 35702008 | 35702029 | 5.71e-09 | 7.31e-05 | tcccccaccacgcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 150876977 | 150876998 | 5.74e-09 | 7.31e-05 | CGAGCCACCGCGCCCAGCCTAA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 39033322 | 39033343 | 5.95e-09 | 7.4e-05 | CGTGCTACCACGCCCAGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 107027845 | 107027866 | 6.64e-09 | 8.09e-05 | TGAGCCACCGCGCCCGGCCATC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr17 | - | 4143241 | 4143262 | 6.94e-09 | 8.27e-05 | TGAGCCACCGCGCCTGGCCCTT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 35702143 | 35702164 | 7.71e-09 | 8.99e-05 | tgagccaccacgtccggccCCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 55829294 | 55829315 | 9.23e-09 | 0.000106 | CGCGCCACCACGCCTGGCGAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 35947760 | 35947781 | 1.19e-08 | 0.000134 | cctgccaccacgcccgactaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 3988158 | 3988179 | 1.75e-08 | 0.000192 | cctgccaccacacccgggtaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 2945529 | 2945550 | 1.79e-08 | 0.000192 | TGAACCACCGCGCCCGGCCGAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr2 | + | 28894126 | 28894147 | 2.15e-08 | 0.000227 | ccaaccaccaagcccggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 161765161 | 161765182 | 2.27e-08 | 0.000236 | tgagccaccgcgcccggccTTA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr9 | - | 131373908 | 131373929 | 2.42e-08 | 0.000243 | CCCGCCACCGCGCCCTGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr3 | + | 58335155 | 58335176 | 2.44e-08 | 0.000243 | tgagccaccacacctggccCTG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 41262754 | 41262775 | 2.47e-08 | 0.000243 | TGAGCCACCGCGCCCGGCCCCA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr7 | - | 74079560 | 74079581 | 3.01e-08 | 0.000291 | TGAGTCACCACTCCCGGCCAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr17 | - | 75905300 | 75905321 | 3.16e-08 | 0.0003 | TGAGCCACCGCGCCCAGCCCTC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr2 | + | 28894403 | 28894424 | 3.27e-08 | 0.000306 | tgagccaccgcgcccggccCCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr17 | + | 1259237 | 1259258 | 3.94e-08 | 0.000356 | tgagccaccgcgcccggccTGG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 2096024 | 2096045 | 3.94e-08 | 0.000356 | tgagccaccgcgcccggccTCG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 59814337 | 59814358 | 4.7e-08 | 0.000418 | tgagccacctcgcccagccGGT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr3 | - | 169763289 | 169763310 | 5.08e-08 | 0.000445 | CACACCACCATACCCGGCTGAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr22 | + | 26756555 | 26756576 | 7.11e-08 | 0.000612 | cgagccaccgcgcctggccCTC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 49817773 | 49817794 | 7.3e-08 | 0.000619 | CCCGCAACCACGCCCCGCTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 41262889 | 41262910 | 7.4e-08 | 0.000619 | CCCGCCACCATGCCCGACTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 120292317 | 120292338 | 7.71e-08 | 0.000635 | TGAGCCACCGCGCCCAGCCGTG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 1000091 | 1000112 | 1.38e-07 | 0.00112 | tgaaccaccgcgcccggcAAGT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 55216311 | 55216332 | 1.89e-07 | 0.00151 | ttggccaccacgcctggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 21659050 | 21659071 | 5.31e-07 | 0.00419 | tgcaccatcaggcccagctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 39033187 | 39033208 | 7.76e-07 | 0.00604 | TGAGTCACCGCACCCAGCCACA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 37211178 | 37211199 | 7.94e-07 | 0.00609 | tgagccaccgcctccggcTGTT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 39502545 | 39502566 | 8.15e-07 | 0.00615 | tgagccaccatgcttggcTGAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 44259778 | 44259799 | 8.24e-07 | 0.00615 | tgagccactgcacctggccCCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr14 | + | 24114904 | 24114925 | 1.13e-06 | 0.00831 | CCTGCGACCGCTCCTGGCTGGT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 49817638 | 49817659 | 1.29e-06 | 0.00936 | TGAGCCACCGCGCCGGGCCCGC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 31197502 | 31197523 | 1.3e-06 | 0.00936 | tgagccaccgcgctcggcTGTC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 30907800 | 30907821 | 1.72e-06 | 0.0122 | tgagtcaccgcgcccggccTGG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 49495914 | 49495935 | 1.81e-06 | 0.0127 | tgagccaccgcgctaggccGAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr10 | - | 87095780 | 87095801 | 2.07e-06 | 0.0143 | TGAGCCACCGCGCCGGGCCGGA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr7 | + | 6448488 | 6448509 | 2.16e-06 | 0.0147 | tgaaccactgcgcccggccCTG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 55829161 | 55829182 | 2.29e-06 | 0.0155 | TGAGCCACGGTGCCCGGCCACC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 21659185 | 21659206 | 2.93e-06 | 0.0195 | tgaaccacagtgcccggccGAA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 32130854 | 32130875 | 3.22e-06 | 0.0212 | CCCGCCATCACGCCGAGCTATT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 111990398 | 111990419 | 3.52e-06 | 0.0229 | CCCACCCCCAAACCCAGCTCAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 39073411 | 39073432 | 4.72e-06 | 0.0304 | tccatcactatgcctggctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr4 | + | 88456745 | 88456766 | 4.94e-06 | 0.0315 | tgaatcaccgcgcccggccGCG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr20 | - | 3160060 | 3160081 | 5.61e-06 | 0.0353 | TGAGCCACCGCGCCGGGACTAA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | + | 8698108 | 8698129 | 6.79e-06 | 0.0423 | TGTGCGAGGACGCCCGGCCAGC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 10333120 | 10333141 | 7.4e-06 | 0.0455 | CGCCCCCCCACGTCCCGCTCTT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 39402790 | 39402811 | 7.71e-06 | 0.0469 | ACAGCCAACACTTCCGGCCTAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr5 | + | 43192595 | 43192616 | 9.03e-06 | 0.0541 | CGTACCCCCACACCTGCCCAGG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 40610116 | 40610137 | 9.18e-06 | 0.0541 | TCCGCCcccacgcccaggcccc |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr15 | - | 83011197 | 83011218 | 9.18e-06 | 0.0541 | CCTACCCGCACTCCCAGTCCAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 28649001 | 28649022 | 9.46e-06 | 0.0552 | CGCGCCACCACGCACGTATAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 146038666 | 146038687 | 9.73e-06 | 0.0562 | tgagccatcgcccccggccaga |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 55216446 | 55216467 | 1.16e-05 | 0.0664 | tgagccaccacgcctgCCGCGA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 235505149 | 235505170 | 1.18e-05 | 0.0669 | TCTCCCAGCTCGCCCGGCTCCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 39320352 | 39320373 | 1.34e-05 | 0.0752 | CGAGCGGGCACACCCGGCTCCA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr20 | + | 62301927 | 62301948 | 1.38e-05 | 0.0759 | tgagccaccgcgcctgAGCCCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 43182028 | 43182049 | 1.39e-05 | 0.0759 | CGCGCCCCCACGCCCCTCTTCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr14 | - | 24114748 | 24114769 | 1.4e-05 | 0.0759 | CCCGCCCCCTTGGCCAGCCAAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr17 | - | 61412625 | 61412646 | 1.48e-05 | 0.0798 | TGTGCCTCCGTGCCCCGCTTGC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 49495592 | 49495613 | 1.69e-05 | 0.0903 | tgagccaccgagcccgtttttt |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 84912935 | 84912956 | 1.83e-05 | 0.0966 | CCAGCCTGCGCTCCTGGCTACC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr9 | - | 135967746 | 135967767 | 1.95e-05 | 0.102 | CCCACCACCTCGCCCCTCCAGG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr7 | + | 6448357 | 6448378 | 2.35e-05 | 0.12 | cgcgccaccacggctaattttt |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 32130548 | 32130569 | 2.36e-05 | 0.12 | CGCGCCACCATGACCTACTAAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr11 | - | 65112384 | 65112405 | 2.37e-05 | 0.12 | TGCGCCTCCGCACCCCGTCCTC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | + | 132710544 | 132710565 | 2.38e-05 | 0.12 | tccgcccctgcacccagcctcc |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 35899760 | 35899781 | 2.6e-05 | 0.13 | CGAGCCACCTCCTCCCGCCCCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr22 | + | 24244172 | 24244193 | 2.72e-05 | 0.135 | CCCACGAGCACACCCTGCCACC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | + | 88785768 | 88785789 | 2.85e-05 | 0.14 | CCGGCCACCGCGCGCGGCTTTG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 6280608 | 6280629 | 2.9e-05 | 0.141 | ctcgccattatgcccagctaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 31652171 | 31652192 | 2.97e-05 | 0.143 | CGCGCACGCGCGCCACGCCCAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | - | 88812500 | 88812521 | 2.98e-05 | 0.143 | TGCGCGCCCTGGCCTGGCCACA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 35694328 | 35694349 | 3.09e-05 | 0.146 | TGAGTCACTGTGCCTGGCTGAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | - | 527078 | 527099 | 3.15e-05 | 0.148 | TAAACGGCCACGCCGGGCTCAA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr17 | + | 79839866 | 79839887 | 3.23e-05 | 0.149 | TCCGCCGCCGCTCCCAGTTGCA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr4 | + | 182144325 | 182144346 | 3.23e-05 | 0.149 | CGGGCCTCCTCACCTGGCCCTT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 37779436 | 37779457 | 3.27e-05 | 0.15 | TCCACCACCCCGGCTGGTTTAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 29237112 | 29237133 | 3.45e-05 | 0.157 | ACAAACAGCACTCCCGGCCAGG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | + | 4254036 | 4254057 | 3.5e-05 | 0.158 | CCCGCCCCCAAGCCACGCCTCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 146038256 | 146038277 | 3.8e-05 | 0.17 | CGAGCCACCACGTCGGCCTGGA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 143450647 | 143450668 | 3.84e-05 | 0.17 | TTCGCCTCCATACCCAGCCACC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 40348294 | 40348315 | 4.05e-05 | 0.179 | AGTCCCACCACCCCCGGCCCGC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | + | 30894450 | 30894471 | 4.12e-05 | 0.18 | TGTCCGCCCTCGCCAGGCTGTT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 57046466 | 57046487 | 4.22e-05 | 0.182 | CGCGCGACCGCGCCGCGCGACT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 6689362 | 6689383 | 4.25e-05 | 0.182 | TGCAGCACCACTTCCGGGTGAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 36797860 | 36797881 | 4.26e-05 | 0.182 | TGCAACAGAACACCTGGCTAGA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 12782582 | 12782603 | 4.7e-05 | 0.199 | CGCACGACCGCGTCGGGTTCCA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr10 | + | 17201747 | 17201768 | 4.89e-05 | 0.206 | TCTCCTACCGCTCCAGGCTCAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr10 | - | 91609029 | 91609050 | 4.99e-05 | 0.208 | AGTGTCACCTCCTCCGGCCAGT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr4 | - | 82900850 | 82900871 | 5.15e-05 | 0.214 | AGAGGCCGCGCTCCCGGCTGAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 122095167 | 122095188 | 5.21e-05 | 0.214 | CACACCACCACACCGCACTCAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr15 | + | 72117901 | 72117922 | 5.22e-05 | 0.214 | TCCCCCGCCGCACCCCGCCCAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 40610122 | 40610143 | 5.38e-05 | 0.218 | cccacgcccaggccccgccctt |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 36797306 | 36797327 | 5.57e-05 | 0.221 | tgagccgccgcgctcggccGGC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 33795570 | 33795591 | 5.62e-05 | 0.221 | ACTGCGCCCCCGCCTGGCTCCA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 47743265 | 47743286 | 5.62e-05 | 0.221 | TGAGTCACCAGGCCTCGCTGCA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr7 | - | 74079875 | 74079896 | 5.62e-05 | 0.221 | TGAGCCACTGAGTCCGGCCTGA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 12782639 | 12782660 | 5.63e-05 | 0.221 | CGCACGCGCGCACGCAGCCAGT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | + | 232630540 | 232630561 | 6.23e-05 | 0.242 | GGCGCGACCCCACCCGGCCCTC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr7 | + | 25856847 | 25856868 | 6.33e-05 | 0.244 | ACCACCAGCGCTTCTGACTCAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | + | 11074 | 11095 | 6.35e-05 | 0.244 | agtggcagcacgcccgcctgct |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 84298743 | 84298764 | 6.54e-05 | 0.248 | TCTGCCCCCACTCCACTCCACA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 40610540 | 40610561 | 6.55e-05 | 0.248 | AGTGCCACCGCGTGCCGCCGCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 39320512 | 39320533 | 6.75e-05 | 0.253 | CGCGCGACAGCGCCCAGACACA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | + | 85643096 | 85643117 | 6.78e-05 | 0.253 | accaccaccaccACTAGCCTCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 10417006 | 10417027 | 7.15e-05 | 0.265 | CGAAGCCCCGCCCCTAGCCCAA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 225653668 | 225653689 | 7.38e-05 | 0.271 | CGCGCGAGGGCACCCGGCCGCG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 40610171 | 40610192 | 7.4e-05 | 0.271 | ccctcccccaggccccgccACT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr5 | + | 173284675 | 173284696 | 7.76e-05 | 0.279 | tccatcccctcatccatccaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr5 | + | 173284798 | 173284819 | 7.76e-05 | 0.279 | tccatcccctcatccatccaat |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr9 | + | 124856106 | 124856127 | 7.8e-05 | 0.279 | ACAGCCGCCTCTCCAGGCTTCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 247070 | 247091 | 7.82e-05 | 0.279 | agtggcagcacacccgcctgct |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr11 | - | 72238182 | 72238203 | 7.88e-05 | 0.279 | TCCGCCCCCGGGGCCAGCCCCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr20 | - | 63177253 | 63177274 | 7.92e-05 | 0.279 | TGCACCCACGCGCGCAGCCCCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 38403450 | 38403471 | 8.02e-05 | 0.28 | AGCACCTCCGCGCCCGCCTCTC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr16 | - | 981172 | 981193 | 8.04e-05 | 0.28 | GCAGCGCCCAGGCCCAGCTCGT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr12 | - | 46384045 | 46384066 | 8.15e-05 | 0.28 | TGCACCCCCGCGTCCCTCCTTG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 163413687 | 163413708 | 8.15e-05 | 0.28 | TCGGCCGGCGCGCCCGGCTCCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 5309161 | 5309182 | 8.21e-05 | 0.28 | CTCACCACCAGAGCCAGCCAAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 53651869 | 53651890 | 8.56e-05 | 0.29 | TACAGCCCCGCGACCGGCCAGT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 53554293 | 53554314 | 8.58e-05 | 0.29 | TGTGCGACCAGACCCCGACACA |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr15 | + | 83208208 | 83208229 | 8.67e-05 | 0.291 | CCCACGCCCACCTCCCGCTGAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr22 | + | 21001975 | 21001996 | 8.94e-05 | 0.298 | CCAGCCGCCGCTCCTCCCCAAG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | + | 41859822 | 41859843 | 9.11e-05 | 0.302 | ACTACTCCCACTTCCGGCCAGG |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr22 | - | 49975863 | 49975884 | 9.18e-05 | 0.302 | TCTGCCACCACACACACCACAC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr15 | + | 75625741 | 75625762 | 9.37e-05 | 0.307 | CCTCCCCCCGCCCCCAGCTGCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr5 | - | 139341670 | 139341691 | 9.54e-05 | 0.31 | CGCGCCCCTACGGCCGGCTGCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 462081 | 462102 | 9.59e-05 | 0.31 | CGCGACCGCGCGCCTCGCTCCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr6 | - | 28790365 | 28790386 | 9.68e-05 | 0.311 | TAAGACACAGCGCTCGGCTGAT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr2 | - | 230864477 | 230864498 | 9.76e-05 | 0.311 | CCTGTCCCCACGCCCCCCTCCT |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr19 | - | 461959 | 461980 | 9.79e-05 | 0.311 | CCTGCCAGCGCGTCCCGGCCCC |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr9 | + | 11506 | 11527 | 9.89e-05 | 0.312 | actggcagcacgcccgcctgct |
YGHGCCACCACGCCCGGCTAAT | MEME-7 | chr1 | - | 25998250 | 25998271 | 9.91e-05 | 0.312 | CGCACGACCACGCGGGGCTGGA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif YGHGCCACCACGCCCGGCTAAT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.