# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:17:10 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF785.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:17:10 PDT 2018)
#        host: wotan
#        when: Thu May 10 20:04:15 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.189 C 0.298 G 0.314 T 0.199


MOTIF CSGGRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CSGGRA     TYCCSG        180         92   7.7e-010   2.2e-005
#           CCGGGA     TCCCGG         81         34   2.5e-006   7.2e-002
#           CGGGAA     TTCCCG         44         13   1.6e-005   4.5e-001
#           CCGGAA     TTCCGG         39         17   1.8e-003   5.3e+001
#           CGGGGA     TCCCCG         65         41   9.5e-003   2.7e+002

letter-probability matrix: alength= 4 w= 6 nsites= 218 E= 2.2e-005
0.000000 1.000000 0.000000 0.000000
0.000000 0.536697 0.463303 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.334862 0.000000 0.665138 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACGCSYG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGCSYG   CRSGCGTG         60         12   1.5e-009   4.2e-005
#         CACGCGCG   CGCGCGTG         29          8   3.1e-004   8.8e+000
#         CACGCCTG   CAGGCGTG         17          2   3.3e-004   9.4e+000
#         CACGCCCG   CGGGCGTG         12          2   6.2e-003   1.8e+002
#         CACGCGTG   CACGCGTG          7          0   7.7e-003   2.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 4.2e-005
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.446154 0.553846 0.000000
0.000000 0.630769 0.000000 0.369231
0.000000 0.000000 1.000000 0.000000


MOTIF AAATTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AAATTA     TAATTT         29          1   2.1e-008   5.9e-004
#           AAATTA     TAATTT         29          1   2.1e-008   5.9e-004

letter-probability matrix: alength= 4 w= 6 nsites= 30 E= 5.9e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATCCCWG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ATCCCWG    CWGGGAT         36          4   6.0e-008   1.7e-003
#          ATCCCAG    CTGGGAT         24          3   2.1e-005   5.8e-001
#          ATCCCTG    CAGGGAT         12          1   1.6e-003   4.6e+001

letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 1.7e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.558140 0.000000 0.000000 0.441860
0.000000 0.000000 1.000000 0.000000


MOTIF TGACMTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACMTCA   TGAKGTCA         27          2   6.3e-007   1.8e-002
#         TGACCTCA   TGAGGTCA         17          1   6.5e-005   1.8e+000
#         TGACATCA   TGATGTCA         10          1   5.7e-003   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 1.8e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.577778 0.422222 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 74.59 seconds