# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF781.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF781.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF781.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF781.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:49:59 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF781.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:49:59 PST 2017) # host: wotan # when: Mon Dec 18 17:10:29 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.390 C 0.112 G 0.115 T 0.382 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 600 125 5.4e-217 1.1e-212 # TAAATAAA TTTATTTA 600 125 5.4e-217 1.1e-212 letter-probability matrix: alength= 4 w= 8 nsites= 3067 E= 1.1e-212 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWS DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWS SWCTC 479 59 1.9e-145 3.9e-141 # GAGAC GTCTC 370 17 3.2e-122 6.5e-118 # GAGTC GACTC 270 18 2.0e-074 4.1e-070 # GAGTG CACTC 154 10 6.2e-039 1.3e-034 # GAGAG CTCTC 62 18 1.7e-007 3.5e-003 letter-probability matrix: alength= 4 w= 5 nsites= 837 E= 3.9e-141 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.544803 0.000000 0.000000 0.455197 0.000000 0.745520 0.254480 0.000000 MOTIF ACASAG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACASAG CTSTGT 174 11 7.4e-045 1.3e-040 # ACAGAG CTCTGT 153 5 6.2e-044 1.1e-039 # ACACAG CTGTGT 27 6 1.3e-004 2.4e+000 letter-probability matrix: alength= 4 w= 6 nsites= 182 E= 1.3e-040 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.148352 0.851648 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CWTCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CWTCTC GAGAWG 147 12 8.7e-035 1.5e-030 # CATCTC GAGATG 130 9 6.6e-032 1.2e-027 # CTTCTC GAGAAG 17 3 1.2e-003 2.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 149 E= 1.5e-030 0.000000 1.000000 0.000000 0.000000 0.879195 0.000000 0.000000 0.120805 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CMCWG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CMCWG CWGKG 185 61 1.7e-019 2.9e-015 # CCCAG CTGGG 95 23 6.4e-013 1.1e-008 # CACTG CAGTG 49 17 3.2e-005 5.6e-001 # CCCTG CAGGG 49 18 6.4e-005 1.1e+000 # CACAG CTGTG 29 10 1.4e-003 2.5e+001 letter-probability matrix: alength= 4 w= 5 nsites= 218 E= 2.9e-015 0.000000 1.000000 0.000000 0.000000 0.325688 0.674312 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.582569 0.000000 0.000000 0.417431 0.000000 0.000000 1.000000 0.000000 MOTIF AGAGCR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGAGCR YGCTCT 60 5 6.6e-014 1.1e-009 # AGAGCA TGCTCT 38 4 1.7e-008 2.8e-004 # AGAGCG CGCTCT 22 1 2.4e-006 3.8e-002 letter-probability matrix: alength= 4 w= 6 nsites= 62 E= 1.1e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.645161 0.000000 0.354839 0.000000 MOTIF GTGMCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GTGMCA TGKCAC 44 2 7.3e-012 1.2e-007 # GTGACA TGTCAC 37 2 8.5e-010 1.4e-005 # GTGCCA TGGCAC 7 0 7.7e-003 1.2e+002 letter-probability matrix: alength= 4 w= 6 nsites= 44 E= 1.2e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.840909 0.159091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCNGGC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCNGGC GCCNGG 44 4 3.8e-010 6.0e-006 # CCAGGC GCCTGG 24 2 4.3e-006 6.8e-002 # CCTGGC GCCAGG 24 2 4.3e-006 6.8e-002 # CCGGGC GCCCGG 8 0 3.8e-003 6.0e+001 # CCCGGC GCCGGG 10 1 5.7e-003 8.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 45 E= 6.0e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.422222 0.155556 0.111111 0.311111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCAACA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GCAACA TGTTGC 42 7 1.1e-007 1.7e-003 # GCAACA TGTTGC 42 7 1.1e-007 1.7e-003 letter-probability matrix: alength= 4 w= 6 nsites= 42 E= 1.7e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 101.72 seconds