******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:18224060-18224560 1.0000 100 chr6:157274261-157274761 1.0000 100 chr7:12570698-12571198 1.0000 100 chr7:65981920-65982420 1.0000 100 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1.0000 100 chr18:267641-268141 1.0000 100 chr15:89334830-89335330 1.0000 100 chr1:94418417-94418917 1.0000 100 chr6:158869949-158870449 1.0000 100 chr5:55226875-55227375 1.0000 100 chr6:132401553-132402053 1.0000 100 chr19:33778289-33778789 1.0000 100 chr19:14137148-14137648 1.0000 100 chr16:30021265-30021765 1.0000 100 chr17:75516048-75516548 1.0000 100 chr20:52972202-52972702 1.0000 100 chr10:92690033-92690533 1.0000 100 chr20:58650983-58651483 1.0000 100 chr19:36797489-36797989 1.0000 100 chr13:46211796-46212296 1.0000 100 chr17:60525773-60526273 1.0000 100 chr19:1261056-1261556 1.0000 100 chr19:40190956-40191456 1.0000 100 chr6:159169708-159170208 1.0000 100 chr12:6533958-6534458 1.0000 100 chr5:95731628-95732128 1.0000 100 chr22:28741990-28742490 1.0000 100 chr17:42422746-42423246 1.0000 100 chr19:36837913-36838413 1.0000 100 chr3:194672261-194672761 1.0000 100 chr11:123654109-12365460 1.0000 100 chrX:21839287-21839787 1.0000 100 chr17:74736837-74737337 1.0000 100 chr19:15555934-15556434 1.0000 100 chr9:133459847-133460347 1.0000 100 chr12:27710749-27711249 1.0000 100 chr1:83998943-83999443 1.0000 100 chr19:58361809-58362309 1.0000 100 chr5:139765579-139766079 1.0000 100 chr17:38751701-38752201 1.0000 100 chr19:38224255-38224755 1.0000 100 chr20:2840211-2840711 1.0000 100 chr10:93702411-93702911 1.0000 100 chr21:8420215-8420715 1.0000 100 chr16:1413664-1414164 1.0000 100 chr19:58573017-58573517 1.0000 100 chr17:26603650-26604150 1.0000 100 chr16:56191339-56191839 1.0000 100 chr1:157992994-157993494 1.0000 100 chr7:100896008-100896508 1.0000 100 chr17:67993803-67994303 1.0000 100 chr19:43639922-43640422 1.0000 100 chr18:70205603-70206103 1.0000 100 chr19:37779000-37779500 1.0000 100 chr5:108727899-108728399 1.0000 100 chr16:1308987-1309487 1.0000 100 chr1:32292127-32292627 1.0000 100 chr4:139453395-139453895 1.0000 100 chr11:18394401-18394901 1.0000 100 chr19:40528911-40529411 1.0000 100 chr1:30718676-30719176 1.0000 100 chr9:105244112-105244612 1.0000 100 chr22:29314814-29315314 1.0000 100 chr16:75433112-75433612 1.0000 100 chr5:139341719-139342219 1.0000 100 chr19:39320105-39320605 1.0000 100 chr3:111859266-111859766 1.0000 100 chr19:40403886-40404386 1.0000 100 chr19:39507219-39507719 1.0000 100 chr22:36386837-36387337 1.0000 100 chr1:93179876-93180376 1.0000 100 chr19:43503609-43504109 1.0000 100 chrUn_KI270466v1:187-687 1.0000 100 chr8:120444998-120445498 1.0000 100 chr12:389156-389656 1.0000 100 chr22:20858950-20859450 1.0000 100 chr19:35154679-35155179 1.0000 100 chr19:32675847-32676347 1.0000 100 chr19:43462908-43463408 1.0000 100 chr19:40090512-40091012 1.0000 100 chr16:3157539-3158039 1.0000 100 chr19:43984094-43984594 1.0000 100 chr19:42387082-42387582 1.0000 100 chr19:46638760-46639260 1.0000 100 chr12:12266913-12267413 1.0000 100 chrUn_KI270467v1:1995-24 1.0000 100 chr1:125179940-125180440 1.0000 100 chrUn_KI270467v1:3101-36 1.0000 100 chrUn_KI270467v1:2896-33 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.174 C 0.326 G 0.326 T 0.174 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.177 C 0.323 G 0.323 T 0.177 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTRTGTGTGTGTGTGTG MEME-1 width = 22 sites = 48 llr = 961 E-value = 3.1e-185 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::3:::1:::::::::1 pos.-specific C :11::13:111:21::1:1:21 probability G 37:919:6:9:9:9:a1a:a:8 matrix T 71819:819:9:81a:8:9:81 bits 2.5 2.2 * 2.0 * * 1.7 * * * * ** Relative 1.5 * * * * * ****** Entropy 1.2 * * * * *** ******* (28.9 bits) 1.0 * ***** ************* 0.7 * ***** ************* 0.5 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus G CA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:39320105-39320605 - 2 3.30e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG T chr21:8420215-8420715 + 36 3.30e-14 tgtgtgtgtg tgtgtgtatgtgtgtgtgtgtg tgtgtgtgtg chr19:36837913-36838413 - 2 3.30e-14 TGTGTGTGTG TGTGTGTATGTGTGTGTGTGTG T chr16:981060-981560 + 23 3.30e-14 CGAGACGGGC tgtgtgtgtgtgtgtgtgtgtg agagagagag chr6:134052050-134052550 - 2 3.30e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG T chr12:57111955-57112455 - 69 3.30e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TGGTGTTGTG chr15:34515070-34515570 + 64 3.30e-14 tctctctctg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr6:27651288-27651788 + 72 3.30e-14 ACTGAAGGGg tgtgtgtgtgtgtgtgtgtgtg tgtgCCT chr6:40587267-40587767 - 27 3.30e-14 TGTGTGTGCG TGTGTGTGTGTGTGTGTGTGTG GAGCGGAGAG chr17:76671155-76671655 + 40 3.30e-14 AAAGCAAGGg tgtgtgtgtgtgtgtgtgtgtg tgtCTTGGCG chr3:134374626-134375126 + 78 3.30e-14 ACTCCGGCtg tgtgtgtgtgtgtgtgtgtgtg t chr19:8610172-8610672 - 52 3.30e-14 GTTTGCGCTG TGTGTGTGTGTGTGTGTGTGTG TCCGTCCACG chr5:93582516-93583016 + 63 3.30e-14 TAAgtgtgtg tgtgtgtatgtgtgtgtgtgtg tgACCATAGA chr10:79445990-79446490 + 6 3.30e-14 CTCCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtATG chr20:52972202-52972702 + 22 3.82e-13 tgtgcgaggg tgtgtgtgtgtgtttgtgtgtg tgtgcatatg chr12:24562182-24562682 + 67 6.57e-13 TTTTTCACTC tgtgtgtgtgtgtctgtgtgtg tgcgtgtgtg chr9:14322061-14322561 + 63 4.37e-12 cgcgtgtgcg tgtgtgcatgtatgtgtgtgtg tggtgggtTT chr1:154607553-154608053 - 53 2.08e-11 GTGCGTCTTG TGAGTGTGTGTGTGTGGGTGTG TGTCGTCTTG chr6:166008665-166009165 + 61 2.67e-11 tgtgtgtgca tgtgtgtatgtgcgtgtgtgca tgtgtgtgtg chr6:157221378-157221878 - 68 3.75e-11 TGTGTGTGAA AGTGTGTATGTGTGTGTGTGCG CGCGCGTGTA chr1:85576410-85576910 - 1 4.78e-11 AGGGTGTGGG GCTGTGTGTGTATGTGTGTGTG chr19:32746642-32747142 + 27 6.64e-11 GCTGATGTGG TTATTCTGTGTGTGTGTGTGTg agagagagag chr20:36092883-36093383 + 25 4.17e-10 GTGTGCGCCG GGTGTGCATCTGTGTGTGCGTG TGTGAGGGTG chr7:66920784-66921284 - 26 5.06e-10 CCGGTCTGGT GTTGTGCGTGTGCGTGTGTGCG TAGTGCGTGT chr17:6069708-6070208 + 18 8.08e-10 GCCCAGAGAg tgtgtgtgtgagtgtgggtgtc ggtgtCTCTG chr22:50628412-50628912 + 37 8.86e-10 ggtgcggggg gctgtgtacgtgtctgtgtgtg gtgtgtgtgg chr19:41218486-41218986 + 72 1.17e-09 cgtctaagag tgtgtgtgcgtgcgtgcgtgcg tgcgtgt chr19:43901252-43901752 - 63 1.28e-09 AATGAACAGG GTTGTGTACGTGTGTGTGCGTT AGACAAATGA chr19:12994870-12995370 + 32 1.40e-09 CCCAGACTGC tgtgtgtgtgtgcccgtgtgta ggggttgtgt chr19:37594915-37595415 + 78 1.67e-09 ACGCATTCTT TGCGGCCAtgtgtgtgtgtgtg c chr19:32745696-32746196 + 35 2.18e-09 GCTGATGTGG TTATTCTGTGTGTGTGTGTGAG AGAGAGAGAG chr19:37293457-37293957 - 12 3.65e-09 TCTTTCTGTC TCTGTCCGTCTGTGTGTGCGTG CGCCTTGGGA chr8:28401326-28401826 + 28 4.31e-09 tgcacgcgcg cgtgtgtatccgtgtgtgtgcg cgtgtatttg chr19:47229133-47229633 - 44 4.31e-09 TGTTGAGGTC TGATGGCATGTGTCTGTGTGTG CCTGATCTAC chr22:38202493-38202993 + 3 5.10e-09 gt gttgtgcttgtgtgtgcgtgtc cgcgcgcgCG chr19:33778289-33778789 - 72 6.00e-09 GCATGCA TTTGTGTTTGCGCGTGTGCGTT CGTGTTGTGG chr1:108877076-108877576 + 17 6.51e-09 GTGACAGGGA GGGGTGCGTGTGCGTGCGTGTG GGGCTTCTGT chr22:19717643-19718143 - 68 1.14e-08 CGTGCGTGCG TGCGTGCGCGCGTTTGTGTGTG CGCGTCCGTG chr19:39498171-39498671 - 66 1.23e-08 GCTGTGTGGC TGCTTCTCTGTGCGTGTGTGTT TATGGGAGAT chr7:140639953-140640453 - 19 1.33e-08 GGCGCGAGTG TGAGTGTGTGTGTGTCCGCGCG CGCGCGTGTG chr19:39996386-39996886 - 48 1.81e-08 GCTCTGGCGG GTTGTGTTTCCGCGTGTGTGTA ATTTGAGTGT chr3:160756446-160756946 + 79 1.22e-07 CTACCCCGGG GCTTTGTATTTGTGTCCGTGTA chr1:157992994-157993494 + 23 1.30e-07 GTTCCAGCGA GGGGGGTATGTGTGTGCGCGCG TTGTGGGGGG chr9:34522404-34522904 + 57 1.80e-07 CGGTGGTTCC TGTGTCTCTGTCTTTGTGTTCG TCTCTCTCCG chr19:38224255-38224755 - 23 6.43e-07 AGGCTGTGAG TATCCGCGTGAATGTGTGTGTA AACTGCCATG chr19:40090512-40091012 - 19 1.01e-06 CGGATCCCCA GGCGTGTGTGTGCGCGGGTATC AGAGGAGGGG chr19:43619582-43620082 + 47 1.01e-06 GAAGCTGAAG GGTTCGCGCGTGCGTGTGCGGG GCAGGAACGC chr7:151277150-151277650 - 72 1.73e-06 GCGCGCC CACGTGCATGCGCGTGTGTGGT CCTAGTGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:39320105-39320605 3.3e-14 1_[-1]_77 chr21:8420215-8420715 3.3e-14 35_[+1]_43 chr19:36837913-36838413 3.3e-14 1_[-1]_77 chr16:981060-981560 3.3e-14 22_[+1]_56 chr6:134052050-134052550 3.3e-14 1_[-1]_77 chr12:57111955-57112455 3.3e-14 68_[-1]_10 chr15:34515070-34515570 3.3e-14 63_[+1]_15 chr6:27651288-27651788 3.3e-14 71_[+1]_7 chr6:40587267-40587767 3.3e-14 26_[-1]_52 chr17:76671155-76671655 3.3e-14 39_[+1]_39 chr3:134374626-134375126 3.3e-14 77_[+1]_1 chr19:8610172-8610672 3.3e-14 51_[-1]_27 chr5:93582516-93583016 3.3e-14 62_[+1]_16 chr10:79445990-79446490 3.3e-14 5_[+1]_73 chr20:52972202-52972702 3.8e-13 21_[+1]_57 chr12:24562182-24562682 6.6e-13 66_[+1]_12 chr9:14322061-14322561 4.4e-12 62_[+1]_16 chr1:154607553-154608053 2.1e-11 52_[-1]_26 chr6:166008665-166009165 2.7e-11 60_[+1]_18 chr6:157221378-157221878 3.8e-11 67_[-1]_11 chr1:85576410-85576910 4.8e-11 [-1]_78 chr19:32746642-32747142 6.6e-11 26_[+1]_52 chr20:36092883-36093383 4.2e-10 24_[+1]_54 chr7:66920784-66921284 5.1e-10 25_[-1]_53 chr17:6069708-6070208 8.1e-10 17_[+1]_61 chr22:50628412-50628912 8.9e-10 36_[+1]_42 chr19:41218486-41218986 1.2e-09 71_[+1]_7 chr19:43901252-43901752 1.3e-09 62_[-1]_16 chr19:12994870-12995370 1.4e-09 31_[+1]_47 chr19:37594915-37595415 1.7e-09 77_[+1]_1 chr19:32745696-32746196 2.2e-09 34_[+1]_44 chr19:37293457-37293957 3.6e-09 11_[-1]_67 chr8:28401326-28401826 4.3e-09 27_[+1]_51 chr19:47229133-47229633 4.3e-09 43_[-1]_35 chr22:38202493-38202993 5.1e-09 2_[+1]_76 chr19:33778289-33778789 6e-09 71_[-1]_7 chr1:108877076-108877576 6.5e-09 16_[+1]_62 chr22:19717643-19718143 1.1e-08 67_[-1]_11 chr19:39498171-39498671 1.2e-08 65_[-1]_13 chr7:140639953-140640453 1.3e-08 18_[-1]_60 chr19:39996386-39996886 1.8e-08 47_[-1]_31 chr3:160756446-160756946 1.2e-07 78_[+1] chr1:157992994-157993494 1.3e-07 22_[+1]_56 chr9:34522404-34522904 1.8e-07 56_[+1]_22 chr19:38224255-38224755 6.4e-07 22_[-1]_56 chr19:40090512-40091012 1e-06 18_[-1]_60 chr19:43619582-43620082 1e-06 46_[+1]_32 chr7:151277150-151277650 1.7e-06 71_[-1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTRTGTGTGTGTGTGTG width=22 seqs=48 chr19:39320105-39320605 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr21:8420215-8420715 ( 36) TGTGTGTATGTGTGTGTGTGTG 1 chr19:36837913-36838413 ( 2) TGTGTGTATGTGTGTGTGTGTG 1 chr16:981060-981560 ( 23) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:134052050-134052550 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111955-57112455 ( 69) TGTGTGTGTGTGTGTGTGTGTG 1 chr15:34515070-34515570 ( 64) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:27651288-27651788 ( 72) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:40587267-40587767 ( 27) TGTGTGTGTGTGTGTGTGTGTG 1 chr17:76671155-76671655 ( 40) TGTGTGTGTGTGTGTGTGTGTG 1 chr3:134374626-134375126 ( 78) TGTGTGTGTGTGTGTGTGTGTG 1 chr19:8610172-8610672 ( 52) TGTGTGTGTGTGTGTGTGTGTG 1 chr5:93582516-93583016 ( 63) TGTGTGTATGTGTGTGTGTGTG 1 chr10:79445990-79446490 ( 6) TGTGTGTGTGTGTGTGTGTGTG 1 chr20:52972202-52972702 ( 22) TGTGTGTGTGTGTTTGTGTGTG 1 chr12:24562182-24562682 ( 67) TGTGTGTGTGTGTCTGTGTGTG 1 chr9:14322061-14322561 ( 63) TGTGTGCATGTATGTGTGTGTG 1 chr1:154607553-154608053 ( 53) TGAGTGTGTGTGTGTGGGTGTG 1 chr6:166008665-166009165 ( 61) TGTGTGTATGTGCGTGTGTGCA 1 chr6:157221378-157221878 ( 68) AGTGTGTATGTGTGTGTGTGCG 1 chr1:85576410-85576910 ( 1) GCTGTGTGTGTATGTGTGTGTG 1 chr19:32746642-32747142 ( 27) TTATTCTGTGTGTGTGTGTGTG 1 chr20:36092883-36093383 ( 25) GGTGTGCATCTGTGTGTGCGTG 1 chr7:66920784-66921284 ( 26) GTTGTGCGTGTGCGTGTGTGCG 1 chr17:6069708-6070208 ( 18) TGTGTGTGTGAGTGTGGGTGTC 1 chr22:50628412-50628912 ( 37) GCTGTGTACGTGTCTGTGTGTG 1 chr19:41218486-41218986 ( 72) TGTGTGTGCGTGCGTGCGTGCG 1 chr19:43901252-43901752 ( 63) GTTGTGTACGTGTGTGTGCGTT 1 chr19:12994870-12995370 ( 32) TGTGTGTGTGTGCCCGTGTGTA 1 chr19:37594915-37595415 ( 78) TGCGGCCATGTGTGTGTGTGTG 1 chr19:32745696-32746196 ( 35) TTATTCTGTGTGTGTGTGTGAG 1 chr19:37293457-37293957 ( 12) TCTGTCCGTCTGTGTGTGCGTG 1 chr8:28401326-28401826 ( 28) CGTGTGTATCCGTGTGTGTGCG 1 chr19:47229133-47229633 ( 44) TGATGGCATGTGTCTGTGTGTG 1 chr22:38202493-38202993 ( 3) GTTGTGCTTGTGTGTGCGTGTC 1 chr19:33778289-33778789 ( 72) TTTGTGTTTGCGCGTGTGCGTT 1 chr1:108877076-108877576 ( 17) GGGGTGCGTGTGCGTGCGTGTG 1 chr22:19717643-19718143 ( 68) TGCGTGCGCGCGTTTGTGTGTG 1 chr19:39498171-39498671 ( 66) TGCTTCTCTGTGCGTGTGTGTT 1 chr7:140639953-140640453 ( 19) TGAGTGTGTGTGTGTCCGCGCG 1 chr19:39996386-39996886 ( 48) GTTGTGTTTCCGCGTGTGTGTA 1 chr3:160756446-160756946 ( 79) GCTTTGTATTTGTGTCCGTGTA 1 chr1:157992994-157993494 ( 23) GGGGGGTATGTGTGTGCGCGCG 1 chr9:34522404-34522904 ( 57) TGTGTCTCTGTCTTTGTGTTCG 1 chr19:38224255-38224755 ( 23) TATCCGCGTGAATGTGTGTGTA 1 chr19:40090512-40091012 ( 19) GGCGTGTGTGTGCGCGGGTATC 1 chr19:43619582-43620082 ( 47) GGTTCGCGCGTGCGTGTGCGGG 1 chr7:151277150-151277650 ( 72) CACGTGCATGCGCGTGTGTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.0465 E= 3.1e-185 -309 -295 -37 196 -209 -195 118 -28 -77 -163 -295 208 -1223 -395 140 -50 -1223 -295 -237 234 -1223 -137 144 -1223 -1223 -37 -1223 208 82 -295 85 -150 -1223 -163 -1223 234 -1223 -195 147 -309 -209 -163 -1223 227 -150 -395 151 -1223 -1223 -49 -1223 212 -1223 -195 140 -150 -1223 -295 -1223 243 -1223 -295 157 -1223 -1223 -137 -237 220 -1223 -1223 163 -1223 -1223 -115 -1223 227 -309 -1223 157 -309 -309 -95 -295 212 -77 -237 122 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 48 E= 3.1e-185 0.020833 0.041667 0.250000 0.687500 0.041667 0.083333 0.729167 0.145833 0.104167 0.104167 0.041667 0.750000 0.000000 0.020833 0.854167 0.125000 0.000000 0.041667 0.062500 0.895833 0.000000 0.125000 0.875000 0.000000 0.000000 0.250000 0.000000 0.750000 0.312500 0.041667 0.583333 0.062500 0.000000 0.104167 0.000000 0.895833 0.000000 0.083333 0.895833 0.020833 0.041667 0.104167 0.000000 0.854167 0.062500 0.020833 0.916667 0.000000 0.000000 0.229167 0.000000 0.770833 0.000000 0.083333 0.854167 0.062500 0.000000 0.041667 0.000000 0.958333 0.000000 0.041667 0.958333 0.000000 0.000000 0.125000 0.062500 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.145833 0.000000 0.854167 0.020833 0.000000 0.958333 0.020833 0.020833 0.166667 0.041667 0.770833 0.104167 0.062500 0.750000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- [TG]GTGTG[TC][GA]TGTG[TC]GTGTGTGTG -------------------------------------------------------------------------------- Time 429.16 secs. ******************************************************************************** ******************************************************************************** MOTIF ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 width = 29 sites = 60 llr = 846 E-value = 1.2e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 84616363925372625252827364535 pos.-specific C ::13:::::3:1121:3:11:2:1:2212 probability G 26253646143626371746262643262 matrix T 1:1111:2:22:1:111112::11:12:1 bits 2.5 2.2 2.0 1.7 * Relative 1.5 * * Entropy 1.2 * * * * * (20.3 bits) 1.0 ** * * * * * * * 0.7 *** * * * * * ** * * * * 0.5 *** ***** ********* * * * ** 0.2 *** ***** ******************* 0.0 ----------------------------- Multilevel AGAGAGAGAGAGAGAGAGAGAGAGAAAGA consensus AGCGAGA CGA AGAC GTGCGAGGGAG sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr16:981060-981560 + 45 3.26e-17 tgtgtgtgtg agagagagagagagagagagagagagaga gagagagaga chr15:34515070-34515570 - 14 3.26e-17 AGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGTTAGTGG chr21:8230446-8230946 - 35 3.26e-17 AGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA AACAGACAGG chr21:8228475-8228975 - 36 3.26e-17 AGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA GACAGACAGA chr5:160312660-160313160 - 59 7.36e-15 CAAAAACAGG AAAAAAAAAAAAAGAGAGAGAGAAAGAAA AACAGGTGGA chr19:51688631-51689131 + 65 9.57e-15 aggaggaggg aaagagggagagagagagagagagaacga gagagaa chr7:76281021-76281521 - 26 9.57e-15 GAAAGAGAGG AGAGAGAGAGAGACAGAGAGACAGAAAAA GAGCGAGAGA chr9:136133407-136133907 + 45 4.25e-14 GGGCGGGgag agacagagatagagagagatagagaggga gagagagaga chr19:37293457-37293957 + 68 8.54e-14 gagcgagaag ggagagagacagagagagagagagagaga gaga chr19:32746642-32747142 + 49 5.97e-13 TGTGTGTGTg agagagagagagagagagggagagactgg ctgatgtggc chr10:79445990-79446490 - 38 2.87e-12 AGAAGAAAGG AGACAAGAAGAGTGAGAGAAAGAGAAGGA CATACACACA chr22:20496072-20496572 - 4 1.21e-10 GAAGGGAAGG AATGAGAGAGTGAAGGAGGGAGGGAATGA GAG chr21:8420215-8420715 - 71 1.22e-09 C AGGCAGAGAAAGAGAGTAAGACAGAAGGC AGACACACAC chr22:44332071-44332571 - 47 5.11e-09 CAGAGGAAGG AAGGAAGGAGGAAGGGAGGGAGGAAGGAA ACGGGGCAGG chr17:59964216-59964716 + 22 6.55e-09 CTTCATGCAC AGACAAGAAAGAGGAGAAAAAAGGGAAGA AAATTCAACA chr5:77644686-77645186 - 51 1.52e-08 GGGAAGGAGA AAAAGGGGAGAGAGAAAGGGAAAGGAGCG AAAAGGGGAA chr19:32745696-32746196 + 1 3.79e-08 . TGACAGAGAGTGGGAGAGAGACTGGCTGA TGTGGTTATT chr19:38336502-38337002 + 18 4.23e-08 GGGGAACTTA AGAGGGGGACTGTCAAAGCGAGAAATAGA AACCAAGACC chr22:36481103-36481603 + 27 4.72e-08 GCAACAATTC AAGGAGGAACTAAGAGTGTGAGAGGAACC AAAAACGAAG chr19:35986947-35987447 - 4 6.53e-08 GGAGGGTCAG GGACAGAGACAGAGAGAGGTGGGGGAGAC ATA chr10:95183831-95184331 + 9 7.27e-08 aggccagg agcagaagatggagagatggagaagcagc aggtgcggag chr6:83853374-83853874 - 5 1.23e-07 GGCACCGGGC AGTGGGGGATGGAGAGTTGGAGGGGAGGA GCTG chrUn_KI270467v1:3101-36 - 53 1.50e-07 AAAGTACCCA AAATATATATTGTAAACTGTACATAAAAT ATCAAAGTAG chr17:67993803-67994303 + 68 1.50e-07 GAGGAAGCCG AGAAGGAAGAAGAGGGAAGGGGAGGCTGA GACG chr6:132401553-132402053 + 9 1.84e-07 GGCTTCCC GGAAAGAAAGggaggaggaggcaggagga ggcagacgcc chr19:43503609-43504109 - 6 2.03e-07 ACAGGTGGCC AGACAGGTAGACAGGTAGAGGGAAACCAG AAAGA chr14:64986748-64987248 - 25 2.48e-07 ACCAGACGGG GGAGGAAGATGGAGGGCAATAGTAGGTGA AAGAACTCGG chr10:100654882-10065538 - 48 2.48e-07 GACTCCAGAG AGACCGAGACGCAGAGTGACAGACAGAAA GACAACAGCC chr19:46638760-46639260 + 17 3.01e-07 AGAAGGAGCG AGCTAGGGACTCAGAGAGACAGAGACGGG GAGGGCGCTG chr12:107317719-10731821 + 65 3.65e-07 TGCGTACCCG AAGTGGGAATAGAGAGGGAGGAAAACCAT GTTTCAG chr17:50272762-50273262 + 25 3.65e-07 AGAGGGGTTA AATATAAGACAGAGAACATGACTGGGAGA GATGAGGGAG chr10:91410311-91410811 + 2 4.01e-07 A AGGGAAGGAGTCAGAGCGCGAGAAGCTGC CGCCCATCGT chr17:5191925-5192425 - 63 5.32e-07 CCATCTCAA AAACAAAACAAAAGGGCAGAACAAAAACG TAGTTACTTG chr2:61016978-61017478 + 28 5.84e-07 CCGGCCCTCG AAGGGAAGAGGGAAGACTAAAGACAACGC ACCTATTGCG chr5:132490378-132490878 + 53 6.40e-07 CGCGACTCCG AGTGGAAGAGGGAAGAAGGCAGAGGTTGC CGGGTTCTTA chr16:29816015-29816515 - 43 8.40e-07 CCACTTTCCG AAAGAGGGAAAGGGGGAGGAGAGGGACGG GCCACTCTTC chr4:77075873-77076373 - 15 8.40e-07 GGAAGGCGGC GGGGAGGAACAGGAAGGGTGAAAGACCAA GTCCGCGTAG chr19:41940432-41940932 + 44 8.40e-07 AGAAGTCCCC GAAGGAAAAGAGAAAGCGGGAGGGGGCCG TCGGGGACGC chr11:112024957-11202545 - 37 9.19e-07 GTTTGGGAGA AATAACAGACGGAAAGGGGTGGAAAGTGG TAGGGTTCTA chrUn_GL000216v2:312-812 - 60 1.00e-06 AGTGAAATGG AATGGAATGGAATCAACGGGAGTGGAAAA GAATGGAATG chrUn_KI270466v1:187-687 - 64 1.20e-06 AATACCCC AAATATATATTATATGCTGTACATAAAAT ATCAAAGTAC chr16:2883255-2883755 - 69 1.43e-06 GGG GGTGGGGAAGGAGGGGCGAGAGGCAAAGA GGGAATCGCG chr18:49561322-49561822 + 38 1.69e-06 GGCCCTCGCT AGGCGGGAAGGGAGGGAGAAGAGGAGGAC AAAGGGGATG chrUn_KI270467v1:1995-24 - 33 2.37e-06 AAGGTACATG AAAGATATATTATATTCTGTACATAAAAT CTCAAAGTAC chr1:125179940-125180440 - 38 3.56e-06 TATCAACACC AAACGGAAAAAAACGGAATTATCGAATGG AATCGAAGAG chr6:159169708-159170208 + 69 3.56e-06 CGGGAGATTC AGGCACAGCGGGGAAAAAAGGAAAAGAAA GGC chr2:196593412-196593912 + 7 3.56e-06 GAAGGG AGGCGGGGGCAGAGGACAGGAGGGACAGC CAGACCTTGG chr12:65278090-65278590 - 17 3.86e-06 CCGCTGAAGG AGTGGGAAACGGACAAACCAACACGAAGA GACCGGACAG chr2:176188134-176188634 - 62 4.52e-06 GCCTGCTCTC GGACAGGTATTGGGCGAGGTGGGGGGAGA AAGGCAGGAC chr17:77373599-77374099 - 27 5.71e-06 CGCTGTCGCT TGGCAAACACAAACAACAATAAAAGGAAG GAAACCCAGG chrUn_KI270467v1:2896-33 - 49 6.66e-06 CAAATACTCA AAATATATATTACATACTGTACATAAAAT ATCAAAGTAC chr19:45862594-45863094 + 8 7.18e-06 ggctgtt agaggtgggggaaaaagcaaagaggccga gtcgaagcaa chr19:37779000-37779500 - 57 7.75e-06 TGAGAGTGTG TGACAGAGAAACTGCGTGTGAGAGGCTGG GATGTGCCTC chr17:38751701-38752201 + 42 1.20e-05 CCATCGGGCG AAATAAGTGGAACCCGGGGGAGAAAGGGA AGGATCCTGA chr12:68686216-68686716 - 51 1.20e-05 CCTGTATTAA AAAGTAGAAAGGCAAGCGTGAAATATGAT GGTATTGCCC chr19:41218486-41218986 - 19 1.39e-05 TGACACACAC AGGCTAGGACAAGCAGAGACACGCAGAGG GACCCAGACG chr6:44246458-44246958 - 72 2.11e-05 . AGGGCGGGACTGGGGGGGACACCGAAAAA GAGCGGAGGC chr6:28725750-28726250 + 25 2.11e-05 CCACAAATAC CAAGGTATACTCTGATAGAAGGAAACCAA AAACAGTCTC chr1:32292127-32292627 + 53 3.36e-05 GGGAGGAGGC TGCGAGGAAGGGAGATCGAGGCTGAGACC AAGAGGGGAT chr20:2840211-2840711 - 59 3.58e-05 GCTCAGGGCG GGACATGGGTGAACGGAAGTGGAAGCTGT GAGCGTCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:981060-981560 3.3e-17 44_[+2]_27 chr15:34515070-34515570 3.3e-17 13_[-2]_58 chr21:8230446-8230946 3.3e-17 34_[-2]_37 chr21:8228475-8228975 3.3e-17 35_[-2]_36 chr5:160312660-160313160 7.4e-15 58_[-2]_13 chr19:51688631-51689131 9.6e-15 64_[+2]_7 chr7:76281021-76281521 9.6e-15 25_[-2]_46 chr9:136133407-136133907 4.2e-14 44_[+2]_27 chr19:37293457-37293957 8.5e-14 67_[+2]_4 chr19:32746642-32747142 6e-13 48_[+2]_23 chr10:79445990-79446490 2.9e-12 37_[-2]_34 chr22:20496072-20496572 1.2e-10 3_[-2]_68 chr21:8420215-8420715 1.2e-09 70_[-2]_1 chr22:44332071-44332571 5.1e-09 46_[-2]_25 chr17:59964216-59964716 6.6e-09 21_[+2]_50 chr5:77644686-77645186 1.5e-08 50_[-2]_21 chr19:32745696-32746196 3.8e-08 [+2]_71 chr19:38336502-38337002 4.2e-08 17_[+2]_54 chr22:36481103-36481603 4.7e-08 26_[+2]_45 chr19:35986947-35987447 6.5e-08 3_[-2]_68 chr10:95183831-95184331 7.3e-08 8_[+2]_63 chr6:83853374-83853874 1.2e-07 4_[-2]_67 chrUn_KI270467v1:3101-36 1.5e-07 52_[-2]_19 chr17:67993803-67994303 1.5e-07 67_[+2]_4 chr6:132401553-132402053 1.8e-07 8_[+2]_63 chr19:43503609-43504109 2e-07 5_[-2]_66 chr14:64986748-64987248 2.5e-07 24_[-2]_47 chr10:100654882-10065538 2.5e-07 47_[-2]_24 chr19:46638760-46639260 3e-07 16_[+2]_55 chr12:107317719-10731821 3.6e-07 64_[+2]_7 chr17:50272762-50273262 3.6e-07 24_[+2]_47 chr10:91410311-91410811 4e-07 1_[+2]_70 chr17:5191925-5192425 5.3e-07 62_[-2]_9 chr2:61016978-61017478 5.8e-07 27_[+2]_44 chr5:132490378-132490878 6.4e-07 52_[+2]_19 chr16:29816015-29816515 8.4e-07 42_[-2]_29 chr4:77075873-77076373 8.4e-07 14_[-2]_57 chr19:41940432-41940932 8.4e-07 43_[+2]_28 chr11:112024957-11202545 9.2e-07 36_[-2]_35 chrUn_GL000216v2:312-812 1e-06 59_[-2]_12 chrUn_KI270466v1:187-687 1.2e-06 63_[-2]_8 chr16:2883255-2883755 1.4e-06 68_[-2]_3 chr18:49561322-49561822 1.7e-06 37_[+2]_34 chrUn_KI270467v1:1995-24 2.4e-06 32_[-2]_39 chr1:125179940-125180440 3.6e-06 37_[-2]_34 chr6:159169708-159170208 3.6e-06 68_[+2]_3 chr2:196593412-196593912 3.6e-06 6_[+2]_65 chr12:65278090-65278590 3.9e-06 16_[-2]_55 chr2:176188134-176188634 4.5e-06 61_[-2]_10 chr17:77373599-77374099 5.7e-06 26_[-2]_45 chrUn_KI270467v1:2896-33 6.7e-06 48_[-2]_23 chr19:45862594-45863094 7.2e-06 7_[+2]_64 chr19:37779000-37779500 7.7e-06 56_[-2]_15 chr17:38751701-38752201 1.2e-05 41_[+2]_30 chr12:68686216-68686716 1.2e-05 50_[-2]_21 chr19:41218486-41218986 1.4e-05 18_[-2]_53 chr6:44246458-44246958 2.1e-05 71_[-2] chr6:28725750-28726250 2.1e-05 24_[+2]_47 chr1:32292127-32292627 3.4e-05 52_[+2]_19 chr20:2840211-2840711 3.6e-05 58_[-2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARASARRGASRGAGAGMGRGAGAGRVARA width=29 seqs=60 chr16:981060-981560 ( 45) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr15:34515070-34515570 ( 14) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr21:8230446-8230946 ( 35) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr21:8228475-8228975 ( 36) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr5:160312660-160313160 ( 59) AAAAAAAAAAAAAGAGAGAGAGAAAGAAA 1 chr19:51688631-51689131 ( 65) AAAGAGGGAGAGAGAGAGAGAGAGAACGA 1 chr7:76281021-76281521 ( 26) AGAGAGAGAGAGACAGAGAGACAGAAAAA 1 chr9:136133407-136133907 ( 45) AGACAGAGATAGAGAGAGATAGAGAGGGA 1 chr19:37293457-37293957 ( 68) GGAGAGAGACAGAGAGAGAGAGAGAGAGA 1 chr19:32746642-32747142 ( 49) AGAGAGAGAGAGAGAGAGGGAGAGACTGG 1 chr10:79445990-79446490 ( 38) AGACAAGAAGAGTGAGAGAAAGAGAAGGA 1 chr22:20496072-20496572 ( 4) AATGAGAGAGTGAAGGAGGGAGGGAATGA 1 chr21:8420215-8420715 ( 71) AGGCAGAGAAAGAGAGTAAGACAGAAGGC 1 chr22:44332071-44332571 ( 47) AAGGAAGGAGGAAGGGAGGGAGGAAGGAA 1 chr17:59964216-59964716 ( 22) AGACAAGAAAGAGGAGAAAAAAGGGAAGA 1 chr5:77644686-77645186 ( 51) AAAAGGGGAGAGAGAAAGGGAAAGGAGCG 1 chr19:32745696-32746196 ( 1) TGACAGAGAGTGGGAGAGAGACTGGCTGA 1 chr19:38336502-38337002 ( 18) AGAGGGGGACTGTCAAAGCGAGAAATAGA 1 chr22:36481103-36481603 ( 27) AAGGAGGAACTAAGAGTGTGAGAGGAACC 1 chr19:35986947-35987447 ( 4) GGACAGAGACAGAGAGAGGTGGGGGAGAC 1 chr10:95183831-95184331 ( 9) AGCAGAAGATGGAGAGATGGAGAAGCAGC 1 chr6:83853374-83853874 ( 5) AGTGGGGGATGGAGAGTTGGAGGGGAGGA 1 chrUn_KI270467v1:3101-36 ( 53) AAATATATATTGTAAACTGTACATAAAAT 1 chr17:67993803-67994303 ( 68) AGAAGGAAGAAGAGGGAAGGGGAGGCTGA 1 chr6:132401553-132402053 ( 9) GGAAAGAAAGGGAGGAGGAGGCAGGAGGA 1 chr19:43503609-43504109 ( 6) AGACAGGTAGACAGGTAGAGGGAAACCAG 1 chr14:64986748-64987248 ( 25) GGAGGAAGATGGAGGGCAATAGTAGGTGA 1 chr10:100654882-10065538 ( 48) AGACCGAGACGCAGAGTGACAGACAGAAA 1 chr19:46638760-46639260 ( 17) AGCTAGGGACTCAGAGAGACAGAGACGGG 1 chr12:107317719-10731821 ( 65) AAGTGGGAATAGAGAGGGAGGAAAACCAT 1 chr17:50272762-50273262 ( 25) AATATAAGACAGAGAACATGACTGGGAGA 1 chr10:91410311-91410811 ( 2) AGGGAAGGAGTCAGAGCGCGAGAAGCTGC 1 chr17:5191925-5192425 ( 63) AAACAAAACAAAAGGGCAGAACAAAAACG 1 chr2:61016978-61017478 ( 28) AAGGGAAGAGGGAAGACTAAAGACAACGC 1 chr5:132490378-132490878 ( 53) AGTGGAAGAGGGAAGAAGGCAGAGGTTGC 1 chr16:29816015-29816515 ( 43) AAAGAGGGAAAGGGGGAGGAGAGGGACGG 1 chr4:77075873-77076373 ( 15) GGGGAGGAACAGGAAGGGTGAAAGACCAA 1 chr19:41940432-41940932 ( 44) GAAGGAAAAGAGAAAGCGGGAGGGGGCCG 1 chr11:112024957-11202545 ( 37) AATAACAGACGGAAAGGGGTGGAAAGTGG 1 chrUn_GL000216v2:312-812 ( 60) AATGGAATGGAATCAACGGGAGTGGAAAA 1 chrUn_KI270466v1:187-687 ( 64) AAATATATATTATATGCTGTACATAAAAT 1 chr16:2883255-2883755 ( 69) GGTGGGGAAGGAGGGGCGAGAGGCAAAGA 1 chr18:49561322-49561822 ( 38) AGGCGGGAAGGGAGGGAGAAGAGGAGGAC 1 chrUn_KI270467v1:1995-24 ( 33) AAAGATATATTATATTCTGTACATAAAAT 1 chr1:125179940-125180440 ( 38) AAACGGAAAAAAACGGAATTATCGAATGG 1 chr6:159169708-159170208 ( 69) AGGCACAGCGGGGAAAAAAGGAAAAGAAA 1 chr2:196593412-196593912 ( 7) AGGCGGGGGCAGAGGACAGGAGGGACAGC 1 chr12:65278090-65278590 ( 17) AGTGGGAAACGGACAAACCAACACGAAGA 1 chr2:176188134-176188634 ( 62) GGACAGGTATTGGGCGAGGTGGGGGGAGA 1 chr17:77373599-77374099 ( 27) TGGCAAACACAAACAACAATAAAAGGAAG 1 chrUn_KI270467v1:2896-33 ( 49) AAATATATATTACATACTGTACATAAAAT 1 chr19:45862594-45863094 ( 8) AGAGGTGGGGGAAAAAGCAAAGAGGCCGA 1 chr19:37779000-37779500 ( 57) TGACAGAGAAACTGCGTGTGAGAGGCTGG 1 chr17:38751701-38752201 ( 42) AAATAAGTGGAACCCGGGGGAGAAAGGGA 1 chr12:68686216-68686716 ( 51) AAAGTAGAAAGGCAAGCGTGAAATATGAT 1 chr19:41218486-41218986 ( 19) AGGCTAGGACAAGCAGAGACACGCAGAGG 1 chr6:44246458-44246958 ( 72) AGGGCGGGACTGGGGGGGACACCGAAAAA 1 chr6:28725750-28726250 ( 25) CAAGGTATACTCTGATAGAAGGAAACCAA 1 chr1:32292127-32292627 ( 53) TGCGAGGAAGGGAGATCGAGGCTGAGACC 1 chr20:2840211-2840711 ( 59) GGACATGGGTGAACGGAAGTGGAAGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.7656 E= 1.2e-079 211 -427 -111 -141 105 -1255 97 -1255 176 -269 -58 -41 -60 -11 58 -83 180 -327 -11 -182 68 -327 81 -60 172 -1255 37 -1255 59 -427 81 -24 229 -327 -169 -1255 -24 -37 37 5 145 -1255 -11 29 59 -169 97 -1255 191 -269 -111 -41 29 -111 97 -1255 184 -269 -28 -182 40 -1255 112 -141 159 -28 -147 -109 5 -327 105 -60 145 -269 18 -83 -24 -195 81 17 214 -1255 -58 -1255 -24 -47 89 -341 195 -327 -69 -109 50 -195 85 -109 184 -1255 18 -1255 111 -47 5 -182 140 -111 -69 5 84 -195 89 -1255 154 -95 -69 -60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 60 E= 1.2e-079 0.766667 0.016667 0.150000 0.066667 0.366667 0.000000 0.633333 0.000000 0.600000 0.050000 0.216667 0.133333 0.116667 0.300000 0.483333 0.100000 0.616667 0.033333 0.300000 0.050000 0.283333 0.033333 0.566667 0.116667 0.583333 0.000000 0.416667 0.000000 0.266667 0.016667 0.566667 0.150000 0.866667 0.033333 0.100000 0.000000 0.150000 0.250000 0.416667 0.183333 0.483333 0.000000 0.300000 0.216667 0.266667 0.100000 0.633333 0.000000 0.666667 0.050000 0.150000 0.133333 0.216667 0.150000 0.633333 0.000000 0.633333 0.050000 0.266667 0.050000 0.233333 0.000000 0.700000 0.066667 0.533333 0.266667 0.116667 0.083333 0.183333 0.033333 0.666667 0.116667 0.483333 0.050000 0.366667 0.100000 0.150000 0.083333 0.566667 0.200000 0.783333 0.000000 0.216667 0.000000 0.150000 0.233333 0.600000 0.016667 0.683333 0.033333 0.200000 0.083333 0.250000 0.083333 0.583333 0.083333 0.633333 0.000000 0.366667 0.000000 0.383333 0.233333 0.333333 0.050000 0.466667 0.150000 0.200000 0.183333 0.316667 0.083333 0.600000 0.000000 0.516667 0.166667 0.200000 0.116667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 regular expression -------------------------------------------------------------------------------- A[GA][AG][GC][AG][GA][AG][GA]A[GC][AGT][GA]A[GA][AG][GA][AC]G[AG][GT][AG][GC][AG][GA][AG][AGC][AG][GA][AG] -------------------------------------------------------------------------------- Time 864.58 secs. ******************************************************************************** ******************************************************************************** MOTIF KRTGTRTGDGWKTGTGTGYRTG MEME-3 width = 22 sites = 30 llr = 443 E-value = 5.7e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1211231:2:312:2::213:3 pos.-specific C :222::1::11::3::::3:2: probability G 351716:7371517:9:7:6:6 matrix T 616:718252547:8:a16:81 bits 2.5 2.2 * 2.0 * 1.7 * * Relative 1.5 * * * * * Entropy 1.2 * * * *** * (21.3 bits) 1.0 * * * * *** * * 0.7 * * ****************** 0.5 * ******************** 0.2 * ******************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus GACCAA TGTATAC ACACA sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:134052050-134052550 - 24 8.63e-14 TTGAGTCCCG TGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTG chr12:57111955-57112455 - 1 8.63e-14 TGCCTGCACG TGTGTGTGTGTGTGTGTGTGTG chr6:166008665-166009165 + 1 6.68e-11 . tgtatgtgtgtgtgtgtgagtg cgcgcgcgcg chr6:40587267-40587767 - 49 8.52e-10 GAGCGTGTGA TCCGTGTGTGTGTGTGTGTGCG TGTGTGTGTG chr21:8420215-8420715 + 14 2.23e-09 tgtctctctc tctctgtgggggtgtgtgtgtg tgtgtgtatg chr19:39320105-39320605 - 24 4.77e-09 CCCGCTCGGG TGTCCATTTGTGTGTGTGTGTG TGTGTGTGTG chr19:39996386-39996886 - 25 4.77e-09 GTGTGTGTAA TTTGAGTGTGAGTCAGTGTGTA GTGAGTGAAG chr19:36686883-36687383 - 22 6.86e-09 GAGCCTTTTA GGTCTGTGGTGTTGTGTGTGTA ACGGGTAAAG chr22:19717643-19718143 - 42 7.72e-09 TGTGTGCGCG TCCGTGCGGGTGTGTGTGTGTA ATGTGTGTGT chr20:52972202-52972702 + 57 1.53e-08 gcatatgtgg ggggtgtgagtgtgtgtgtgcg aggaagcggg chrUn_KI270467v1:2896-33 - 11 2.37e-08 GTACCCAAAT TATGTATTATATACTGTACGTA AATTATCAGA chr8:28401326-28401826 + 2 2.37e-08 g ggtgtatgtgcttgtgtgcacg cgcgcgtgtg chr19:38224255-38224755 - 57 3.99e-08 TCCGTGCGAA GGTGTGTGAGTAGGAGTGTGTG GGAGGCTGTG chr19:32745696-32746196 + 79 5.95e-08 TGGCTGATGT GGTCATTCTGTGTGTGTGTGTG chr16:981060-981560 + 79 6.56e-08 agagagagag agagagagagtgtgtgtgtgtg chr6:157221378-157221878 - 38 7.95e-08 CGCGCGCGTG TACGTGTGTCTGAGTGTGCACG TGTGAGTGTG chrUn_KI270467v1:3101-36 - 15 8.74e-08 GTAGCCAAAA TATATATTGTATACTGTACATA AAATATAAAA chrUn_KI270467v1:1995-24 - 79 8.74e-08 . TATATATTGTATACTGTACATA AAATATGAAG chrUn_KI270466v1:187-687 - 26 9.60e-08 GTACACAAAA TATGTATTATGTACTGTACATA CAATATCAAA chr6:17101393-17101893 + 2 3.03e-07 C ATCGTGTTGGTTTCTGTTCGTG CGACCGTCTT chr19:34253930-34254430 + 30 3.03e-07 cccggatatg tgacaatggtattgtgtattta ccactaagga chr17:59220602-59221102 + 51 3.57e-07 AGAGTTTGAG GAAGAATGGGGTTGTGTGAATT GAGGGCTCTT chr19:37371075-37371575 + 53 4.21e-07 CGCTGGGGAG GCCGTGTGTGTTTCACTGTATT ACCAACTATG chr17:6069708-6070208 + 68 4.94e-07 TGATTCGGGA TGTGTGTGTCAGGCAGTGTGCG GCTGTCGCTG chr9:14322061-14322561 + 27 6.24e-07 TTGAACGCCG TCCAGGATGgtgtgtgtgtgtg cgcccgcgtg chr18:33579003-33579503 + 73 9.80e-07 GTGGCTCCAG TTCGTTTGTGTTTGTAGGTATT GTGCTC chr5:93582516-93583016 + 41 1.22e-06 TTCCCCCTCT GGGGTGTGAGCGTAAgtgtgtg tgtgtgtatg chr19:7691982-7692482 - 73 1.51e-06 TGTGTT GATGGACGTGAATGTGTTCATG ACAGTGGTGT chr1:108746183-108746683 + 8 2.12e-06 ATCCTCC AGTCTTCGTGTATGTGTGAACT CGGAATTTCA chr6:53651744-53652244 - 8 2.12e-06 GCGCGGTCAC GCTGAGCGACAGAGTGTACGTG ATGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:134052050-134052550 8.6e-14 23_[-3]_55 chr12:57111955-57112455 8.6e-14 [-3]_78 chr6:166008665-166009165 6.7e-11 [+3]_78 chr6:40587267-40587767 8.5e-10 48_[-3]_30 chr21:8420215-8420715 2.2e-09 13_[+3]_65 chr19:39320105-39320605 4.8e-09 23_[-3]_55 chr19:39996386-39996886 4.8e-09 24_[-3]_54 chr19:36686883-36687383 6.9e-09 21_[-3]_57 chr22:19717643-19718143 7.7e-09 41_[-3]_37 chr20:52972202-52972702 1.5e-08 56_[+3]_22 chrUn_KI270467v1:2896-33 2.4e-08 10_[-3]_68 chr8:28401326-28401826 2.4e-08 1_[+3]_77 chr19:38224255-38224755 4e-08 56_[-3]_22 chr19:32745696-32746196 5.9e-08 78_[+3] chr16:981060-981560 6.6e-08 78_[+3] chr6:157221378-157221878 7.9e-08 37_[-3]_41 chrUn_KI270467v1:3101-36 8.7e-08 14_[-3]_64 chrUn_KI270467v1:1995-24 8.7e-08 78_[-3] chrUn_KI270466v1:187-687 9.6e-08 25_[-3]_53 chr6:17101393-17101893 3e-07 1_[+3]_77 chr19:34253930-34254430 3e-07 29_[+3]_49 chr17:59220602-59221102 3.6e-07 50_[+3]_28 chr19:37371075-37371575 4.2e-07 52_[+3]_26 chr17:6069708-6070208 4.9e-07 67_[+3]_11 chr9:14322061-14322561 6.2e-07 26_[+3]_52 chr18:33579003-33579503 9.8e-07 72_[+3]_6 chr5:93582516-93583016 1.2e-06 40_[+3]_38 chr19:7691982-7692482 1.5e-06 72_[-3]_6 chr1:108746183-108746683 2.1e-06 7_[+3]_71 chr6:53651744-53652244 2.1e-06 7_[-3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KRTGTRTGDGWKTGTGTGYRTG width=22 seqs=30 chr6:134052050-134052550 ( 24) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111955-57112455 ( 1) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:166008665-166009165 ( 1) TGTATGTGTGTGTGTGTGAGTG 1 chr6:40587267-40587767 ( 49) TCCGTGTGTGTGTGTGTGTGCG 1 chr21:8420215-8420715 ( 14) TCTCTGTGGGGGTGTGTGTGTG 1 chr19:39320105-39320605 ( 24) TGTCCATTTGTGTGTGTGTGTG 1 chr19:39996386-39996886 ( 25) TTTGAGTGTGAGTCAGTGTGTA 1 chr19:36686883-36687383 ( 22) GGTCTGTGGTGTTGTGTGTGTA 1 chr22:19717643-19718143 ( 42) TCCGTGCGGGTGTGTGTGTGTA 1 chr20:52972202-52972702 ( 57) GGGGTGTGAGTGTGTGTGTGCG 1 chrUn_KI270467v1:2896-33 ( 11) TATGTATTATATACTGTACGTA 1 chr8:28401326-28401826 ( 2) GGTGTATGTGCTTGTGTGCACG 1 chr19:38224255-38224755 ( 57) GGTGTGTGAGTAGGAGTGTGTG 1 chr19:32745696-32746196 ( 79) GGTCATTCTGTGTGTGTGTGTG 1 chr16:981060-981560 ( 79) AGAGAGAGAGTGTGTGTGTGTG 1 chr6:157221378-157221878 ( 38) TACGTGTGTCTGAGTGTGCACG 1 chrUn_KI270467v1:3101-36 ( 15) TATATATTGTATACTGTACATA 1 chrUn_KI270467v1:1995-24 ( 79) TATATATTGTATACTGTACATA 1 chrUn_KI270466v1:187-687 ( 26) TATGTATTATGTACTGTACATA 1 chr6:17101393-17101893 ( 2) ATCGTGTTGGTTTCTGTTCGTG 1 chr19:34253930-34254430 ( 30) TGACAATGGTATTGTGTATTTA 1 chr17:59220602-59221102 ( 51) GAAGAATGGGGTTGTGTGAATT 1 chr19:37371075-37371575 ( 53) GCCGTGTGTGTTTCACTGTATT 1 chr17:6069708-6070208 ( 68) TGTGTGTGTCAGGCAGTGTGCG 1 chr9:14322061-14322561 ( 27) TCCAGGATGGTGTGTGTGTGTG 1 chr18:33579003-33579503 ( 73) TTCGTTTGTGTTTGTAGGTATT 1 chr5:93582516-93583016 ( 41) GGGGTGTGAGCGTAAGTGTGTG 1 chr19:7691982-7692482 ( 73) GATGGACGTGAATGTGTTCATG 1 chr1:108746183-108746683 ( 8) AGTCTTCGTGTATGTGTGAACT 1 chr6:53651744-53652244 ( 8) GCTGAGCGACAGAGTGTACGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.9 E= 5.7e-027 -83 -1155 5 168 40 -69 53 -83 -83 -47 -227 176 -41 -69 105 -1155 17 -327 -227 198 76 -1155 89 -83 -141 -127 -1155 217 -1155 -327 118 40 40 -1155 -11 140 -1155 -169 112 17 59 -227 -127 159 -83 -1155 72 105 17 -1155 -227 205 -241 -28 112 -1155 -9 -1155 -1155 223 -241 -327 153 -1155 -1155 -1155 -327 245 17 -1155 118 -141 -83 -11 -1155 176 91 -1155 97 -241 -1155 -69 -1155 217 59 -1155 89 -41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 30 E= 5.7e-027 0.100000 0.000000 0.333333 0.566667 0.233333 0.200000 0.466667 0.100000 0.100000 0.233333 0.066667 0.600000 0.133333 0.200000 0.666667 0.000000 0.200000 0.033333 0.066667 0.700000 0.300000 0.000000 0.600000 0.100000 0.066667 0.133333 0.000000 0.800000 0.000000 0.033333 0.733333 0.233333 0.233333 0.000000 0.300000 0.466667 0.000000 0.100000 0.700000 0.200000 0.266667 0.066667 0.133333 0.533333 0.100000 0.000000 0.533333 0.366667 0.200000 0.000000 0.066667 0.733333 0.033333 0.266667 0.700000 0.000000 0.166667 0.000000 0.000000 0.833333 0.033333 0.033333 0.933333 0.000000 0.000000 0.000000 0.033333 0.966667 0.200000 0.000000 0.733333 0.066667 0.100000 0.300000 0.000000 0.600000 0.333333 0.000000 0.633333 0.033333 0.000000 0.200000 0.000000 0.800000 0.266667 0.000000 0.600000 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 regular expression -------------------------------------------------------------------------------- [TG][GAC][TC][GC][TA][GA]T[GT][TGA][GT][TA][GT][TA][GC]TGT[GA][TC][GA][TC][GA] -------------------------------------------------------------------------------- Time 1264.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18224060-18224560 2.72e-02 100 chr6:157274261-157274761 3.92e-02 100 chr7:12570698-12571198 1.13e-01 100 chr7:65981920-65982420 6.45e-01 100 chr5:134738416-134738916 9.96e-01 100 chr17:38869348-38869848 3.12e-02 100 chr19:43619582-43620082 1.96e-03 46_[+1(1.01e-06)]_32 chr20:63657997-63658497 2.91e-01 100 chr12:53006524-53007024 2.26e-01 100 chr6:33299559-33300059 4.69e-01 100 chr18:49813402-49813902 7.96e-01 100 chr3:10992843-10993343 5.75e-01 100 chr6:69867410-69867910 3.03e-01 100 chr17:45894573-45895073 9.28e-01 100 chr8:38787408-38787908 3.89e-01 100 chr7:73522236-73522736 1.55e-01 100 chr11:64449066-64449566 4.01e-01 100 chr5:80960627-80961127 3.33e-01 100 chr7:66920784-66921284 2.67e-10 25_[-1(5.06e-10)]_2_[-1(5.27e-05)]_\ 29 chr12:110468783-11046928 4.55e-01 100 chr19:32746642-32747142 1.84e-19 22_[+3(9.80e-07)]_4_[+2(5.97e-13)]_\ 23 chr5:113487877-113488377 3.77e-01 100 chr11:73308847-73309347 9.64e-01 100 chr19:35986947-35987447 5.08e-05 3_[-2(6.53e-08)]_68 chr19:13149939-13150439 8.28e-01 100 chr16:15055405-15055905 1.74e-01 100 chr11:125887676-12588817 2.48e-01 100 chr5:132490378-132490878 1.68e-03 52_[+2(6.40e-07)]_19 chr2:112055666-112056166 7.21e-01 100 chr18:59696665-59697165 1.48e-01 100 chr20:46013885-46014385 4.38e-01 100 chr8:11201499-11201999 9.97e-01 100 chr1:168137106-168137606 1.34e-01 100 chr2:153871302-153871802 9.43e-01 100 chr12:68686216-68686716 1.98e-02 50_[-2(1.20e-05)]_21 chr5:177403265-177403765 5.44e-01 100 chr14_GL000225v1_random: 7.98e-01 100 chr16:54284918-54285418 1.66e-01 100 chr16:52547301-52547801 3.94e-03 48_[-2(1.84e-05)]_23 chr15:89893960-89894460 6.89e-01 100 chr7:76281021-76281521 7.59e-12 25_[-2(9.57e-15)]_2_[-2(2.38e-12)]_\ 15 chr6:157221378-157221878 9.86e-15 37_[-3(7.95e-08)]_8_[-1(3.75e-11)]_\ 11 chr5:139518087-139518587 6.32e-01 100 chr3:160756446-160756946 8.47e-05 78_[+1(1.22e-07)] chr2:37325009-37325509 2.83e-01 100 chr6:83853374-83853874 4.67e-04 4_[-2(1.23e-07)]_67 chr19:29605829-29606329 3.24e-02 100 chr4:102827389-102827889 9.25e-01 100 chr19:41940432-41940932 3.20e-03 43_[+2(8.40e-07)]_28 chr4:77075873-77076373 3.87e-04 14_[-2(8.40e-07)]_57 chr7:29194911-29195411 7.88e-01 100 chr4:77156779-77157279 9.00e-01 100 chr19:38337105-38337605 5.42e-01 100 chr17:59619484-59619984 2.35e-02 100 chr6:96924695-96925195 4.42e-01 100 chr1:108877076-108877576 1.30e-05 16_[+1(6.51e-09)]_62 chr10:100655804-10065630 1.81e-02 14_[-2(1.72e-05)]_57 chr1:159854337-159854837 2.44e-02 10_[-2(4.34e-05)]_61 chr19:4669961-4670461 3.79e-01 100 chr16:1826840-1827340 9.83e-01 100 chr10:86711940-86712440 4.79e-01 100 chr9:4792878-4793378 2.45e-02 53_[-2(4.62e-05)]_18 chr20:62972382-62972882 1.47e-01 100 chr1:109484007-109484507 6.98e-02 100 chr19:5805558-5806058 9.71e-01 100 chr12:121095580-12109608 5.03e-03 78_[+1(9.95e-05)] chr12:67269236-67269736 5.15e-01 100 chr5:157858769-157859269 5.40e-01 100 chr1:182391296-182391796 3.21e-01 100 chr21:8228475-8228975 2.82e-16 33_[-2(3.26e-17)]_9_[-2(2.41e-08)] chr18:49561322-49561822 7.65e-03 37_[+2(1.69e-06)]_34 chr10:79445990-79446490 7.96e-29 5_[+1(3.30e-14)]_10_[-2(2.87e-12)]_\ 34 chr7:33129447-33129947 9.65e-03 100 chr19:45862594-45863094 7.33e-03 7_[+2(7.18e-06)]_64 chr8:93916771-93917271 5.38e-01 100 chr7:92833610-92834110 3.85e-01 100 chr10:91410311-91410811 2.98e-03 1_[+2(4.01e-07)]_70 chr7:26376725-26377225 1.94e-01 100 chr17:3754999-3755499 9.04e-01 100 chr17:18260470-18260970 9.15e-01 100 chr16:29816015-29816515 2.42e-03 42_[-2(8.40e-07)]_29 chr2:69386828-69387328 8.18e-01 100 chr17:48817215-48817715 3.91e-01 100 chr22:41833051-41833551 6.94e-01 100 chr22:36481103-36481603 5.36e-05 26_[+2(4.72e-08)]_45 chr19:41884311-41884811 6.22e-02 100 chr2:109128473-109128973 9.79e-01 100 chr17:4739278-4739778 4.93e-01 100 chr19:39996386-39996886 4.02e-10 24_[-3(4.77e-09)]_1_[-1(1.81e-08)]_\ 31 chr19:1383566-1384066 8.53e-01 100 chr22:44332071-44332571 3.66e-06 [-2(8.98e-08)]_17_[-2(5.11e-09)]_25 chr19:34404419-34404919 6.25e-01 100 chr10:100654882-10065538 1.80e-05 41_[-2(1.66e-07)]_30 chr12:65121096-65121596 6.46e-02 57_[+2(8.97e-05)]_14 chr18:21600614-21601114 9.44e-02 100 chr12:65278090-65278590 1.81e-04 16_[-2(3.86e-06)]_55 chr9:137301504-137302004 9.93e-01 100 chr19:33796333-33796833 8.45e-01 100 chr2:100818448-100818948 3.46e-01 100 chr9:138150232-138150732 1.59e-02 3_[+1(6.09e-05)]_75 chr1:18641148-18641648 3.17e-01 100 chr5:93582516-93583016 6.25e-22 11_[-2(2.41e-05)]_[+3(1.22e-06)]_\ [+1(3.30e-14)]_16 chr22:41620591-41621091 9.91e-01 100 chr1:9687133-9687633 1.13e-01 100 chr16:89872997-89873497 2.15e-01 100 chr17:77373599-77374099 7.99e-05 22_[-2(5.32e-07)]_49 chr17:76737525-76738025 2.00e-01 100 chr14:49598355-49598855 5.01e-01 100 chr20:326461-326961 9.59e-01 100 chr12:64404505-64405005 7.65e-02 100 chr6:21595632-21596132 2.51e-01 100 chr6:28725750-28726250 1.97e-03 24_[+2(2.11e-05)]_47 chr5:150409965-150410465 1.24e-01 100 chr10:72215870-72216370 5.25e-01 100 chr6:28923124-28923624 6.25e-01 100 chr16:89560202-89560702 9.14e-01 100 chr1:110407546-110408046 1.42e-01 100 chr5:77644686-77645186 8.41e-06 56_[-2(3.97e-09)]_15 chr17:6651806-6652306 8.91e-01 100 chr5:181261503-181262003 7.25e-01 100 chr3:133038346-133038846 8.01e-03 31_[-2(2.95e-05)]_40 chr12:49296851-49297351 7.12e-01 100 chr6:73653586-73654086 8.10e-01 100 chr1:33180970-33181470 8.43e-02 100 chr18:57434064-57434564 2.91e-02 62_[-2(3.15e-05)]_9 chr17:4949558-4950058 6.04e-01 100 chr17:50272762-50273262 1.48e-04 24_[+2(3.65e-07)]_3_[+2(3.01e-07)]_\ 15 chr1:155173671-155174171 4.62e-01 100 chr19:37371075-37371575 8.76e-05 52_[+3(4.21e-07)]_26 chr20:41316851-41317351 1.54e-02 44_[-1(5.88e-05)]_34 chr12:24562182-24562682 6.69e-20 66_[+1(6.57e-13)]_12 chr15:59105019-59105519 5.83e-01 100 chr1:231162686-231163186 9.70e-01 100 chr1:109548590-109549090 7.65e-02 4_[+2(9.51e-05)]_67 chr14:104461667-10446216 9.71e-01 100 chr5:112976784-112977284 1.07e-01 100 chr12:49842731-49843231 9.88e-02 100 chr10:123008416-12300891 3.88e-02 7_[-2(6.68e-05)]_64 chr7:94004320-94004820 4.85e-02 100 chr17:57085953-57086453 8.85e-01 100 chr16:74984532-74985032 2.21e-01 100 chr2:196593412-196593912 1.80e-02 6_[+2(3.56e-06)]_65 chr19:36772267-36772767 5.67e-02 100 chr8:24955462-24955962 4.90e-01 100 chr9:14322061-14322561 2.91e-12 38_[+1(2.83e-08)]_2_[+1(4.37e-12)]_\ 16 chr5:77491932-77492432 6.92e-01 100 chr2:61016978-61017478 2.67e-03 27_[+2(5.84e-07)]_44 chr19:41218486-41218986 1.75e-10 32_[+1(1.64e-06)]_17_[+1(1.17e-09)]_\ 7 chr3:11096289-11096789 7.24e-02 100 chr2:71226561-71227061 4.93e-01 100 chr12:63668692-63669192 9.36e-01 100 chr19:47229133-47229633 3.41e-07 43_[-1(4.31e-09)]_35 chr1:84893172-84893672 3.36e-01 100 chr22:24555464-24555964 1.38e-01 100 chr19:8342850-8343350 7.38e-01 100 chr14:104723633-10472413 9.56e-01 100 chr19:8610172-8610672 5.06e-20 51_[-1(3.30e-14)]_27 chr6:13013904-13014404 5.62e-01 100 chr10:113679136-11367963 1.97e-01 100 chr22:22297481-22297981 1.92e-02 100 chr15:72117542-72118042 3.77e-01 100 chr16:57299800-57300300 1.36e-01 100 chr5:140639461-140639961 2.29e-01 100 chr6:166008665-166009165 2.21e-14 [+3(6.68e-11)]_14_[+1(4.78e-11)]_2_\ [+1(2.67e-11)]_18 chr11:76444174-76444674 2.57e-01 100 chr14:59483898-59484398 9.76e-01 100 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chr19:33778289-33778789 4.76e-07 71_[-1(6.00e-09)]_7 chr19:14137148-14137648 1.00e+00 100 chr16:30021265-30021765 2.13e-02 17_[+2(1.84e-05)]_54 chr17:75516048-75516548 3.87e-01 100 chr20:52972202-52972702 1.25e-19 23_[+3(1.81e-14)]_9_[+1(8.29e-09)]_\ 24 chr10:92690033-92690533 1.14e-01 100 chr20:58650983-58651483 9.46e-02 18_[+2(5.24e-05)]_53 chr19:36797489-36797989 2.80e-01 100 chr13:46211796-46212296 1.01e-01 100 chr17:60525773-60526273 1.68e-01 100 chr19:1261056-1261556 3.09e-01 100 chr19:40190956-40191456 9.86e-01 100 chr6:159169708-159170208 1.36e-02 68_[+2(3.56e-06)]_3 chr12:6533958-6534458 1.49e-01 100 chr5:95731628-95732128 9.07e-02 100 chr22:28741990-28742490 9.96e-01 100 chr17:42422746-42423246 9.83e-01 100 chr19:36837913-36838413 6.73e-21 1_[-1(3.30e-14)]_28_[-2(6.29e-05)]_\ 20 chr3:194672261-194672761 8.90e-01 100 chr11:123654109-12365460 7.15e-01 100 chrX:21839287-21839787 1.12e-01 100 chr17:74736837-74737337 5.15e-02 100 chr19:15555934-15556434 4.61e-02 100 chr9:133459847-133460347 3.91e-01 100 chr12:27710749-27711249 3.98e-02 100 chr1:83998943-83999443 5.68e-01 100 chr19:58361809-58362309 2.03e-01 100 chr5:139765579-139766079 6.64e-01 100 chr17:38751701-38752201 2.19e-02 41_[+2(1.20e-05)]_30 chr19:38224255-38224755 6.08e-08 56_[-3(3.99e-08)]_[-1(1.16e-05)] chr20:2840211-2840711 1.89e-02 58_[-2(3.58e-05)]_13 chr10:93702411-93702911 7.41e-02 61_[+2(5.92e-05)]_10 chr21:8420215-8420715 2.85e-26 13_[+3(2.23e-09)]_[+1(3.30e-14)]_13_\ [-2(1.22e-09)]_1 chr16:1413664-1414164 9.57e-02 13_[+3(4.49e-05)]_65 chr19:58573017-58573517 4.90e-02 100 chr17:26603650-26604150 3.73e-02 75_[+3(1.39e-05)]_3 chr16:56191339-56191839 8.22e-01 100 chr1:157992994-157993494 1.40e-05 22_[+1(1.30e-07)]_56 chr7:100896008-100896508 4.28e-03 1_[-1(2.66e-05)]_1_[-1(7.47e-06)]_\ 54 chr17:67993803-67994303 9.30e-04 1_[+2(2.41e-05)]_37_[+2(1.50e-07)]_\ 4 chr19:43639922-43640422 4.65e-02 100 chr18:70205603-70206103 7.74e-01 100 chr19:37779000-37779500 4.09e-05 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1.12e-01 32_[-2(8.47e-05)]_39 chr19:32675847-32676347 6.49e-01 100 chr19:43462908-43463408 9.78e-01 100 chr19:40090512-40091012 1.11e-03 18_[-1(1.01e-06)]_60 chr16:3157539-3158039 8.29e-02 100 chr19:43984094-43984594 5.19e-02 100 chr19:42387082-42387582 6.23e-01 100 chr19:46638760-46639260 3.55e-05 16_[+2(3.01e-07)]_20_[+2(1.49e-05)]_\ 6 chr12:12266913-12267413 3.43e-02 100 chrUn_KI270467v1:1995-24 6.05e-07 36_[-3(5.39e-08)]_20_[-3(8.74e-08)] chr1:125179940-125180440 2.41e-04 37_[-2(3.56e-06)]_34 chrUn_KI270467v1:3101-36 7.88e-08 14_[-3(8.74e-08)]_16_[-2(1.50e-07)]_\ 19 chrUn_KI270467v1:2896-33 6.62e-07 10_[-3(2.37e-08)]_20_[-3(2.35e-07)]_\ 26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kadru ********************************************************************************