******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:18224060-18224560 1.0000 100 chr6:157274261-157274761 1.0000 100 chr7:12570698-12571198 1.0000 100 chr7:65981920-65982420 1.0000 100 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1.0000 100 chr18:267641-268141 1.0000 100 chr15:89334830-89335330 1.0000 100 chr1:94418417-94418917 1.0000 100 chr6:158869949-158870449 1.0000 100 chr5:55226875-55227375 1.0000 100 chr6:132401553-132402053 1.0000 100 chr19:33778289-33778789 1.0000 100 chr19:14137148-14137648 1.0000 100 chr16:30021265-30021765 1.0000 100 chr17:75516048-75516548 1.0000 100 chr20:52972202-52972702 1.0000 100 chr10:92690033-92690533 1.0000 100 chr20:58650983-58651483 1.0000 100 chr19:36797489-36797989 1.0000 100 chr13:46211796-46212296 1.0000 100 chr17:60525773-60526273 1.0000 100 chr19:1261056-1261556 1.0000 100 chr19:40190956-40191456 1.0000 100 chr6:159169708-159170208 1.0000 100 chr12:6533958-6534458 1.0000 100 chr5:95731628-95732128 1.0000 100 chr22:28741990-28742490 1.0000 100 chr17:42422746-42423246 1.0000 100 chr19:36837913-36838413 1.0000 100 chr3:194672261-194672761 1.0000 100 chr11:123654109-12365460 1.0000 100 chrX:21839287-21839787 1.0000 100 chr17:74736837-74737337 1.0000 100 chr19:15555934-15556434 1.0000 100 chr9:133459847-133460347 1.0000 100 chr12:27710749-27711249 1.0000 100 chr1:83998943-83999443 1.0000 100 chr19:58361809-58362309 1.0000 100 chr5:139765579-139766079 1.0000 100 chr17:38751701-38752201 1.0000 100 chr19:38224255-38224755 1.0000 100 chr20:2840211-2840711 1.0000 100 chr10:93702411-93702911 1.0000 100 chr21:8420215-8420715 1.0000 100 chr16:1413664-1414164 1.0000 100 chr19:58573017-58573517 1.0000 100 chr17:26603650-26604150 1.0000 100 chr16:56191339-56191839 1.0000 100 chr1:157992994-157993494 1.0000 100 chr7:100896008-100896508 1.0000 100 chr17:67993803-67994303 1.0000 100 chr19:43639922-43640422 1.0000 100 chr18:70205603-70206103 1.0000 100 chr19:37779000-37779500 1.0000 100 chr5:108727899-108728399 1.0000 100 chr16:1308987-1309487 1.0000 100 chr1:32292127-32292627 1.0000 100 chr4:139453395-139453895 1.0000 100 chr11:18394401-18394901 1.0000 100 chr19:40528911-40529411 1.0000 100 chr1:30718676-30719176 1.0000 100 chr9:105244112-105244612 1.0000 100 chr22:29314814-29315314 1.0000 100 chr16:75433112-75433612 1.0000 100 chr5:139341719-139342219 1.0000 100 chr19:39320105-39320605 1.0000 100 chr3:111859266-111859766 1.0000 100 chr19:40403886-40404386 1.0000 100 chr19:39507219-39507719 1.0000 100 chr22:36386837-36387337 1.0000 100 chr1:93179876-93180376 1.0000 100 chr19:43503609-43504109 1.0000 100 chrUn_KI270466v1:187-687 1.0000 100 chr8:120444998-120445498 1.0000 100 chr12:389156-389656 1.0000 100 chr22:20858950-20859450 1.0000 100 chr19:35154679-35155179 1.0000 100 chr19:32675847-32676347 1.0000 100 chr19:43462908-43463408 1.0000 100 chr19:40090512-40091012 1.0000 100 chr16:3157539-3158039 1.0000 100 chr19:43984094-43984594 1.0000 100 chr19:42387082-42387582 1.0000 100 chr19:46638760-46639260 1.0000 100 chr12:12266913-12267413 1.0000 100 chrUn_KI270467v1:1995-24 1.0000 100 chr1:125179940-125180440 1.0000 100 chrUn_KI270467v1:3101-36 1.0000 100 chrUn_KI270467v1:2896-33 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.174 C 0.326 G 0.326 T 0.174 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF777.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.177 C 0.323 G 0.323 T 0.177 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTRTGTGTGTGTGTGTG MEME-1 width = 22 sites = 48 llr = 961 E-value = 3.1e-185 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::3:::1:::::::::1 pos.-specific C :11::13:111:21::1:1:21 probability G 37:919:6:9:9:9:a1a:a:8 matrix T 71819:819:9:81a:8:9:81 bits 2.5 2.2 * 2.0 * * 1.7 * * * * ** Relative 1.5 * * * * * ****** Entropy 1.2 * * * * *** ******* (28.9 bits) 1.0 * ***** ************* 0.7 * ***** ************* 0.5 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus G CA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:39320105-39320605 - 2 3.30e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG T chr21:8420215-8420715 + 36 3.30e-14 tgtgtgtgtg tgtgtgtatgtgtgtgtgtgtg tgtgtgtgtg chr19:36837913-36838413 - 2 3.30e-14 TGTGTGTGTG TGTGTGTATGTGTGTGTGTGTG T chr16:981060-981560 + 23 3.30e-14 CGAGACGGGC tgtgtgtgtgtgtgtgtgtgtg agagagagag chr6:134052050-134052550 - 2 3.30e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG T chr12:57111955-57112455 - 69 3.30e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TGGTGTTGTG chr15:34515070-34515570 + 64 3.30e-14 tctctctctg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr6:27651288-27651788 + 72 3.30e-14 ACTGAAGGGg tgtgtgtgtgtgtgtgtgtgtg tgtgCCT chr6:40587267-40587767 - 27 3.30e-14 TGTGTGTGCG TGTGTGTGTGTGTGTGTGTGTG GAGCGGAGAG chr17:76671155-76671655 + 40 3.30e-14 AAAGCAAGGg tgtgtgtgtgtgtgtgtgtgtg tgtCTTGGCG chr3:134374626-134375126 + 78 3.30e-14 ACTCCGGCtg tgtgtgtgtgtgtgtgtgtgtg t chr19:8610172-8610672 - 52 3.30e-14 GTTTGCGCTG TGTGTGTGTGTGTGTGTGTGTG TCCGTCCACG chr5:93582516-93583016 + 63 3.30e-14 TAAgtgtgtg tgtgtgtatgtgtgtgtgtgtg tgACCATAGA chr10:79445990-79446490 + 6 3.30e-14 CTCCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtATG chr20:52972202-52972702 + 22 3.82e-13 tgtgcgaggg tgtgtgtgtgtgtttgtgtgtg tgtgcatatg chr12:24562182-24562682 + 67 6.57e-13 TTTTTCACTC tgtgtgtgtgtgtctgtgtgtg tgcgtgtgtg chr9:14322061-14322561 + 63 4.37e-12 cgcgtgtgcg tgtgtgcatgtatgtgtgtgtg tggtgggtTT chr1:154607553-154608053 - 53 2.08e-11 GTGCGTCTTG TGAGTGTGTGTGTGTGGGTGTG TGTCGTCTTG chr6:166008665-166009165 + 61 2.67e-11 tgtgtgtgca tgtgtgtatgtgcgtgtgtgca tgtgtgtgtg chr6:157221378-157221878 - 68 3.75e-11 TGTGTGTGAA AGTGTGTATGTGTGTGTGTGCG CGCGCGTGTA chr1:85576410-85576910 - 1 4.78e-11 AGGGTGTGGG GCTGTGTGTGTATGTGTGTGTG chr19:32746642-32747142 + 27 6.64e-11 GCTGATGTGG TTATTCTGTGTGTGTGTGTGTg agagagagag chr20:36092883-36093383 + 25 4.17e-10 GTGTGCGCCG GGTGTGCATCTGTGTGTGCGTG TGTGAGGGTG chr7:66920784-66921284 - 26 5.06e-10 CCGGTCTGGT GTTGTGCGTGTGCGTGTGTGCG TAGTGCGTGT chr17:6069708-6070208 + 18 8.08e-10 GCCCAGAGAg tgtgtgtgtgagtgtgggtgtc ggtgtCTCTG chr22:50628412-50628912 + 37 8.86e-10 ggtgcggggg gctgtgtacgtgtctgtgtgtg gtgtgtgtgg chr19:41218486-41218986 + 72 1.17e-09 cgtctaagag tgtgtgtgcgtgcgtgcgtgcg tgcgtgt chr19:43901252-43901752 - 63 1.28e-09 AATGAACAGG GTTGTGTACGTGTGTGTGCGTT AGACAAATGA chr19:12994870-12995370 + 32 1.40e-09 CCCAGACTGC tgtgtgtgtgtgcccgtgtgta ggggttgtgt chr19:37594915-37595415 + 78 1.67e-09 ACGCATTCTT TGCGGCCAtgtgtgtgtgtgtg c chr19:32745696-32746196 + 35 2.18e-09 GCTGATGTGG TTATTCTGTGTGTGTGTGTGAG AGAGAGAGAG chr19:37293457-37293957 - 12 3.65e-09 TCTTTCTGTC TCTGTCCGTCTGTGTGTGCGTG CGCCTTGGGA chr8:28401326-28401826 + 28 4.31e-09 tgcacgcgcg cgtgtgtatccgtgtgtgtgcg cgtgtatttg chr19:47229133-47229633 - 44 4.31e-09 TGTTGAGGTC TGATGGCATGTGTCTGTGTGTG CCTGATCTAC chr22:38202493-38202993 + 3 5.10e-09 gt gttgtgcttgtgtgtgcgtgtc cgcgcgcgCG chr19:33778289-33778789 - 72 6.00e-09 GCATGCA TTTGTGTTTGCGCGTGTGCGTT CGTGTTGTGG chr1:108877076-108877576 + 17 6.51e-09 GTGACAGGGA GGGGTGCGTGTGCGTGCGTGTG GGGCTTCTGT chr22:19717643-19718143 - 68 1.14e-08 CGTGCGTGCG TGCGTGCGCGCGTTTGTGTGTG CGCGTCCGTG chr19:39498171-39498671 - 66 1.23e-08 GCTGTGTGGC TGCTTCTCTGTGCGTGTGTGTT TATGGGAGAT chr7:140639953-140640453 - 19 1.33e-08 GGCGCGAGTG TGAGTGTGTGTGTGTCCGCGCG CGCGCGTGTG chr19:39996386-39996886 - 48 1.81e-08 GCTCTGGCGG GTTGTGTTTCCGCGTGTGTGTA ATTTGAGTGT chr3:160756446-160756946 + 79 1.22e-07 CTACCCCGGG GCTTTGTATTTGTGTCCGTGTA chr1:157992994-157993494 + 23 1.30e-07 GTTCCAGCGA GGGGGGTATGTGTGTGCGCGCG TTGTGGGGGG chr9:34522404-34522904 + 57 1.80e-07 CGGTGGTTCC TGTGTCTCTGTCTTTGTGTTCG TCTCTCTCCG chr19:38224255-38224755 - 23 6.43e-07 AGGCTGTGAG TATCCGCGTGAATGTGTGTGTA AACTGCCATG chr19:40090512-40091012 - 19 1.01e-06 CGGATCCCCA GGCGTGTGTGTGCGCGGGTATC AGAGGAGGGG chr19:43619582-43620082 + 47 1.01e-06 GAAGCTGAAG GGTTCGCGCGTGCGTGTGCGGG GCAGGAACGC chr7:151277150-151277650 - 72 1.73e-06 GCGCGCC CACGTGCATGCGCGTGTGTGGT CCTAGTGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:39320105-39320605 3.3e-14 1_[-1]_77 chr21:8420215-8420715 3.3e-14 35_[+1]_43 chr19:36837913-36838413 3.3e-14 1_[-1]_77 chr16:981060-981560 3.3e-14 22_[+1]_56 chr6:134052050-134052550 3.3e-14 1_[-1]_77 chr12:57111955-57112455 3.3e-14 68_[-1]_10 chr15:34515070-34515570 3.3e-14 63_[+1]_15 chr6:27651288-27651788 3.3e-14 71_[+1]_7 chr6:40587267-40587767 3.3e-14 26_[-1]_52 chr17:76671155-76671655 3.3e-14 39_[+1]_39 chr3:134374626-134375126 3.3e-14 77_[+1]_1 chr19:8610172-8610672 3.3e-14 51_[-1]_27 chr5:93582516-93583016 3.3e-14 62_[+1]_16 chr10:79445990-79446490 3.3e-14 5_[+1]_73 chr20:52972202-52972702 3.8e-13 21_[+1]_57 chr12:24562182-24562682 6.6e-13 66_[+1]_12 chr9:14322061-14322561 4.4e-12 62_[+1]_16 chr1:154607553-154608053 2.1e-11 52_[-1]_26 chr6:166008665-166009165 2.7e-11 60_[+1]_18 chr6:157221378-157221878 3.8e-11 67_[-1]_11 chr1:85576410-85576910 4.8e-11 [-1]_78 chr19:32746642-32747142 6.6e-11 26_[+1]_52 chr20:36092883-36093383 4.2e-10 24_[+1]_54 chr7:66920784-66921284 5.1e-10 25_[-1]_53 chr17:6069708-6070208 8.1e-10 17_[+1]_61 chr22:50628412-50628912 8.9e-10 36_[+1]_42 chr19:41218486-41218986 1.2e-09 71_[+1]_7 chr19:43901252-43901752 1.3e-09 62_[-1]_16 chr19:12994870-12995370 1.4e-09 31_[+1]_47 chr19:37594915-37595415 1.7e-09 77_[+1]_1 chr19:32745696-32746196 2.2e-09 34_[+1]_44 chr19:37293457-37293957 3.6e-09 11_[-1]_67 chr8:28401326-28401826 4.3e-09 27_[+1]_51 chr19:47229133-47229633 4.3e-09 43_[-1]_35 chr22:38202493-38202993 5.1e-09 2_[+1]_76 chr19:33778289-33778789 6e-09 71_[-1]_7 chr1:108877076-108877576 6.5e-09 16_[+1]_62 chr22:19717643-19718143 1.1e-08 67_[-1]_11 chr19:39498171-39498671 1.2e-08 65_[-1]_13 chr7:140639953-140640453 1.3e-08 18_[-1]_60 chr19:39996386-39996886 1.8e-08 47_[-1]_31 chr3:160756446-160756946 1.2e-07 78_[+1] chr1:157992994-157993494 1.3e-07 22_[+1]_56 chr9:34522404-34522904 1.8e-07 56_[+1]_22 chr19:38224255-38224755 6.4e-07 22_[-1]_56 chr19:40090512-40091012 1e-06 18_[-1]_60 chr19:43619582-43620082 1e-06 46_[+1]_32 chr7:151277150-151277650 1.7e-06 71_[-1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTRTGTGTGTGTGTGTG width=22 seqs=48 chr19:39320105-39320605 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr21:8420215-8420715 ( 36) TGTGTGTATGTGTGTGTGTGTG 1 chr19:36837913-36838413 ( 2) TGTGTGTATGTGTGTGTGTGTG 1 chr16:981060-981560 ( 23) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:134052050-134052550 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111955-57112455 ( 69) TGTGTGTGTGTGTGTGTGTGTG 1 chr15:34515070-34515570 ( 64) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:27651288-27651788 ( 72) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:40587267-40587767 ( 27) TGTGTGTGTGTGTGTGTGTGTG 1 chr17:76671155-76671655 ( 40) TGTGTGTGTGTGTGTGTGTGTG 1 chr3:134374626-134375126 ( 78) TGTGTGTGTGTGTGTGTGTGTG 1 chr19:8610172-8610672 ( 52) TGTGTGTGTGTGTGTGTGTGTG 1 chr5:93582516-93583016 ( 63) TGTGTGTATGTGTGTGTGTGTG 1 chr10:79445990-79446490 ( 6) TGTGTGTGTGTGTGTGTGTGTG 1 chr20:52972202-52972702 ( 22) TGTGTGTGTGTGTTTGTGTGTG 1 chr12:24562182-24562682 ( 67) TGTGTGTGTGTGTCTGTGTGTG 1 chr9:14322061-14322561 ( 63) TGTGTGCATGTATGTGTGTGTG 1 chr1:154607553-154608053 ( 53) TGAGTGTGTGTGTGTGGGTGTG 1 chr6:166008665-166009165 ( 61) TGTGTGTATGTGCGTGTGTGCA 1 chr6:157221378-157221878 ( 68) AGTGTGTATGTGTGTGTGTGCG 1 chr1:85576410-85576910 ( 1) GCTGTGTGTGTATGTGTGTGTG 1 chr19:32746642-32747142 ( 27) TTATTCTGTGTGTGTGTGTGTG 1 chr20:36092883-36093383 ( 25) GGTGTGCATCTGTGTGTGCGTG 1 chr7:66920784-66921284 ( 26) GTTGTGCGTGTGCGTGTGTGCG 1 chr17:6069708-6070208 ( 18) TGTGTGTGTGAGTGTGGGTGTC 1 chr22:50628412-50628912 ( 37) GCTGTGTACGTGTCTGTGTGTG 1 chr19:41218486-41218986 ( 72) TGTGTGTGCGTGCGTGCGTGCG 1 chr19:43901252-43901752 ( 63) GTTGTGTACGTGTGTGTGCGTT 1 chr19:12994870-12995370 ( 32) TGTGTGTGTGTGCCCGTGTGTA 1 chr19:37594915-37595415 ( 78) TGCGGCCATGTGTGTGTGTGTG 1 chr19:32745696-32746196 ( 35) TTATTCTGTGTGTGTGTGTGAG 1 chr19:37293457-37293957 ( 12) TCTGTCCGTCTGTGTGTGCGTG 1 chr8:28401326-28401826 ( 28) CGTGTGTATCCGTGTGTGTGCG 1 chr19:47229133-47229633 ( 44) TGATGGCATGTGTCTGTGTGTG 1 chr22:38202493-38202993 ( 3) GTTGTGCTTGTGTGTGCGTGTC 1 chr19:33778289-33778789 ( 72) TTTGTGTTTGCGCGTGTGCGTT 1 chr1:108877076-108877576 ( 17) GGGGTGCGTGTGCGTGCGTGTG 1 chr22:19717643-19718143 ( 68) TGCGTGCGCGCGTTTGTGTGTG 1 chr19:39498171-39498671 ( 66) TGCTTCTCTGTGCGTGTGTGTT 1 chr7:140639953-140640453 ( 19) TGAGTGTGTGTGTGTCCGCGCG 1 chr19:39996386-39996886 ( 48) GTTGTGTTTCCGCGTGTGTGTA 1 chr3:160756446-160756946 ( 79) GCTTTGTATTTGTGTCCGTGTA 1 chr1:157992994-157993494 ( 23) GGGGGGTATGTGTGTGCGCGCG 1 chr9:34522404-34522904 ( 57) TGTGTCTCTGTCTTTGTGTTCG 1 chr19:38224255-38224755 ( 23) TATCCGCGTGAATGTGTGTGTA 1 chr19:40090512-40091012 ( 19) GGCGTGTGTGTGCGCGGGTATC 1 chr19:43619582-43620082 ( 47) GGTTCGCGCGTGCGTGTGCGGG 1 chr7:151277150-151277650 ( 72) CACGTGCATGCGCGTGTGTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.0465 E= 3.1e-185 -309 -295 -37 196 -209 -195 118 -28 -77 -163 -295 208 -1223 -395 140 -50 -1223 -295 -237 234 -1223 -137 144 -1223 -1223 -37 -1223 208 82 -295 85 -150 -1223 -163 -1223 234 -1223 -195 147 -309 -209 -163 -1223 227 -150 -395 151 -1223 -1223 -49 -1223 212 -1223 -195 140 -150 -1223 -295 -1223 243 -1223 -295 157 -1223 -1223 -137 -237 220 -1223 -1223 163 -1223 -1223 -115 -1223 227 -309 -1223 157 -309 -309 -95 -295 212 -77 -237 122 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 48 E= 3.1e-185 0.020833 0.041667 0.250000 0.687500 0.041667 0.083333 0.729167 0.145833 0.104167 0.104167 0.041667 0.750000 0.000000 0.020833 0.854167 0.125000 0.000000 0.041667 0.062500 0.895833 0.000000 0.125000 0.875000 0.000000 0.000000 0.250000 0.000000 0.750000 0.312500 0.041667 0.583333 0.062500 0.000000 0.104167 0.000000 0.895833 0.000000 0.083333 0.895833 0.020833 0.041667 0.104167 0.000000 0.854167 0.062500 0.020833 0.916667 0.000000 0.000000 0.229167 0.000000 0.770833 0.000000 0.083333 0.854167 0.062500 0.000000 0.041667 0.000000 0.958333 0.000000 0.041667 0.958333 0.000000 0.000000 0.125000 0.062500 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.145833 0.000000 0.854167 0.020833 0.000000 0.958333 0.020833 0.020833 0.166667 0.041667 0.770833 0.104167 0.062500 0.750000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTRTGTGTGTGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- [TG]GTGTG[TC][GA]TGTG[TC]GTGTGTGTG -------------------------------------------------------------------------------- Time 784.23 secs. ******************************************************************************** ******************************************************************************** MOTIF ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 width = 29 sites = 60 llr = 846 E-value = 1.2e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 84616363925372625252827364535 pos.-specific C ::13:::::3:1121:3:11:2:1:2212 probability G 26253646143626371746262643262 matrix T 1:1111:2:22:1:111112::11:12:1 bits 2.5 2.2 2.0 1.7 * Relative 1.5 * * Entropy 1.2 * * * * * (20.3 bits) 1.0 ** * * * * * * * 0.7 *** * * * * * ** * * * * 0.5 *** ***** ********* * * * ** 0.2 *** ***** ******************* 0.0 ----------------------------- Multilevel AGAGAGAGAGAGAGAGAGAGAGAGAAAGA consensus AGCGAGA CGA AGAC GTGCGAGGGAG sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr16:981060-981560 + 45 3.26e-17 tgtgtgtgtg agagagagagagagagagagagagagaga gagagagaga chr15:34515070-34515570 - 14 3.26e-17 AGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGTTAGTGG chr21:8230446-8230946 - 35 3.26e-17 AGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA AACAGACAGG chr21:8228475-8228975 - 36 3.26e-17 AGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGA GACAGACAGA chr5:160312660-160313160 - 59 7.36e-15 CAAAAACAGG AAAAAAAAAAAAAGAGAGAGAGAAAGAAA AACAGGTGGA chr19:51688631-51689131 + 65 9.57e-15 aggaggaggg aaagagggagagagagagagagagaacga gagagaa chr7:76281021-76281521 - 26 9.57e-15 GAAAGAGAGG AGAGAGAGAGAGACAGAGAGACAGAAAAA GAGCGAGAGA chr9:136133407-136133907 + 45 4.25e-14 GGGCGGGgag agacagagatagagagagatagagaggga gagagagaga chr19:37293457-37293957 + 68 8.54e-14 gagcgagaag ggagagagacagagagagagagagagaga gaga chr19:32746642-32747142 + 49 5.97e-13 TGTGTGTGTg agagagagagagagagagggagagactgg ctgatgtggc chr10:79445990-79446490 - 38 2.87e-12 AGAAGAAAGG AGACAAGAAGAGTGAGAGAAAGAGAAGGA CATACACACA chr22:20496072-20496572 - 4 1.21e-10 GAAGGGAAGG AATGAGAGAGTGAAGGAGGGAGGGAATGA GAG chr21:8420215-8420715 - 71 1.22e-09 C AGGCAGAGAAAGAGAGTAAGACAGAAGGC AGACACACAC chr22:44332071-44332571 - 47 5.11e-09 CAGAGGAAGG AAGGAAGGAGGAAGGGAGGGAGGAAGGAA ACGGGGCAGG chr17:59964216-59964716 + 22 6.55e-09 CTTCATGCAC AGACAAGAAAGAGGAGAAAAAAGGGAAGA AAATTCAACA chr5:77644686-77645186 - 51 1.52e-08 GGGAAGGAGA AAAAGGGGAGAGAGAAAGGGAAAGGAGCG AAAAGGGGAA chr19:32745696-32746196 + 1 3.79e-08 . TGACAGAGAGTGGGAGAGAGACTGGCTGA TGTGGTTATT chr19:38336502-38337002 + 18 4.23e-08 GGGGAACTTA AGAGGGGGACTGTCAAAGCGAGAAATAGA AACCAAGACC chr22:36481103-36481603 + 27 4.72e-08 GCAACAATTC AAGGAGGAACTAAGAGTGTGAGAGGAACC AAAAACGAAG chr19:35986947-35987447 - 4 6.53e-08 GGAGGGTCAG GGACAGAGACAGAGAGAGGTGGGGGAGAC ATA chr10:95183831-95184331 + 9 7.27e-08 aggccagg agcagaagatggagagatggagaagcagc aggtgcggag chr6:83853374-83853874 - 5 1.23e-07 GGCACCGGGC AGTGGGGGATGGAGAGTTGGAGGGGAGGA GCTG chrUn_KI270467v1:3101-36 - 53 1.50e-07 AAAGTACCCA AAATATATATTGTAAACTGTACATAAAAT ATCAAAGTAG chr17:67993803-67994303 + 68 1.50e-07 GAGGAAGCCG AGAAGGAAGAAGAGGGAAGGGGAGGCTGA GACG chr6:132401553-132402053 + 9 1.84e-07 GGCTTCCC GGAAAGAAAGggaggaggaggcaggagga ggcagacgcc chr19:43503609-43504109 - 6 2.03e-07 ACAGGTGGCC AGACAGGTAGACAGGTAGAGGGAAACCAG AAAGA chr14:64986748-64987248 - 25 2.48e-07 ACCAGACGGG GGAGGAAGATGGAGGGCAATAGTAGGTGA AAGAACTCGG chr10:100654882-10065538 - 48 2.48e-07 GACTCCAGAG AGACCGAGACGCAGAGTGACAGACAGAAA GACAACAGCC chr19:46638760-46639260 + 17 3.01e-07 AGAAGGAGCG AGCTAGGGACTCAGAGAGACAGAGACGGG GAGGGCGCTG chr12:107317719-10731821 + 65 3.65e-07 TGCGTACCCG AAGTGGGAATAGAGAGGGAGGAAAACCAT GTTTCAG chr17:50272762-50273262 + 25 3.65e-07 AGAGGGGTTA AATATAAGACAGAGAACATGACTGGGAGA GATGAGGGAG chr10:91410311-91410811 + 2 4.01e-07 A AGGGAAGGAGTCAGAGCGCGAGAAGCTGC CGCCCATCGT chr17:5191925-5192425 - 63 5.32e-07 CCATCTCAA AAACAAAACAAAAGGGCAGAACAAAAACG TAGTTACTTG chr2:61016978-61017478 + 28 5.84e-07 CCGGCCCTCG AAGGGAAGAGGGAAGACTAAAGACAACGC ACCTATTGCG chr5:132490378-132490878 + 53 6.40e-07 CGCGACTCCG AGTGGAAGAGGGAAGAAGGCAGAGGTTGC CGGGTTCTTA chr16:29816015-29816515 - 43 8.40e-07 CCACTTTCCG AAAGAGGGAAAGGGGGAGGAGAGGGACGG GCCACTCTTC chr4:77075873-77076373 - 15 8.40e-07 GGAAGGCGGC GGGGAGGAACAGGAAGGGTGAAAGACCAA GTCCGCGTAG chr19:41940432-41940932 + 44 8.40e-07 AGAAGTCCCC GAAGGAAAAGAGAAAGCGGGAGGGGGCCG TCGGGGACGC chr11:112024957-11202545 - 37 9.19e-07 GTTTGGGAGA AATAACAGACGGAAAGGGGTGGAAAGTGG TAGGGTTCTA chrUn_GL000216v2:312-812 - 60 1.00e-06 AGTGAAATGG AATGGAATGGAATCAACGGGAGTGGAAAA GAATGGAATG chrUn_KI270466v1:187-687 - 64 1.20e-06 AATACCCC AAATATATATTATATGCTGTACATAAAAT ATCAAAGTAC chr16:2883255-2883755 - 69 1.43e-06 GGG GGTGGGGAAGGAGGGGCGAGAGGCAAAGA GGGAATCGCG chr18:49561322-49561822 + 38 1.69e-06 GGCCCTCGCT AGGCGGGAAGGGAGGGAGAAGAGGAGGAC AAAGGGGATG chrUn_KI270467v1:1995-24 - 33 2.37e-06 AAGGTACATG AAAGATATATTATATTCTGTACATAAAAT CTCAAAGTAC chr1:125179940-125180440 - 38 3.56e-06 TATCAACACC AAACGGAAAAAAACGGAATTATCGAATGG AATCGAAGAG chr6:159169708-159170208 + 69 3.56e-06 CGGGAGATTC AGGCACAGCGGGGAAAAAAGGAAAAGAAA GGC chr2:196593412-196593912 + 7 3.56e-06 GAAGGG AGGCGGGGGCAGAGGACAGGAGGGACAGC CAGACCTTGG chr12:65278090-65278590 - 17 3.86e-06 CCGCTGAAGG AGTGGGAAACGGACAAACCAACACGAAGA GACCGGACAG chr2:176188134-176188634 - 62 4.52e-06 GCCTGCTCTC GGACAGGTATTGGGCGAGGTGGGGGGAGA AAGGCAGGAC chr17:77373599-77374099 - 27 5.71e-06 CGCTGTCGCT TGGCAAACACAAACAACAATAAAAGGAAG GAAACCCAGG chrUn_KI270467v1:2896-33 - 49 6.66e-06 CAAATACTCA AAATATATATTACATACTGTACATAAAAT ATCAAAGTAC chr19:45862594-45863094 + 8 7.18e-06 ggctgtt agaggtgggggaaaaagcaaagaggccga gtcgaagcaa chr19:37779000-37779500 - 57 7.75e-06 TGAGAGTGTG TGACAGAGAAACTGCGTGTGAGAGGCTGG GATGTGCCTC chr17:38751701-38752201 + 42 1.20e-05 CCATCGGGCG AAATAAGTGGAACCCGGGGGAGAAAGGGA AGGATCCTGA chr12:68686216-68686716 - 51 1.20e-05 CCTGTATTAA AAAGTAGAAAGGCAAGCGTGAAATATGAT GGTATTGCCC chr19:41218486-41218986 - 19 1.39e-05 TGACACACAC AGGCTAGGACAAGCAGAGACACGCAGAGG GACCCAGACG chr6:44246458-44246958 - 72 2.11e-05 . AGGGCGGGACTGGGGGGGACACCGAAAAA GAGCGGAGGC chr6:28725750-28726250 + 25 2.11e-05 CCACAAATAC CAAGGTATACTCTGATAGAAGGAAACCAA AAACAGTCTC chr1:32292127-32292627 + 53 3.36e-05 GGGAGGAGGC TGCGAGGAAGGGAGATCGAGGCTGAGACC AAGAGGGGAT chr20:2840211-2840711 - 59 3.58e-05 GCTCAGGGCG GGACATGGGTGAACGGAAGTGGAAGCTGT GAGCGTCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:981060-981560 3.3e-17 44_[+2]_27 chr15:34515070-34515570 3.3e-17 13_[-2]_58 chr21:8230446-8230946 3.3e-17 34_[-2]_37 chr21:8228475-8228975 3.3e-17 35_[-2]_36 chr5:160312660-160313160 7.4e-15 58_[-2]_13 chr19:51688631-51689131 9.6e-15 64_[+2]_7 chr7:76281021-76281521 9.6e-15 25_[-2]_46 chr9:136133407-136133907 4.2e-14 44_[+2]_27 chr19:37293457-37293957 8.5e-14 67_[+2]_4 chr19:32746642-32747142 6e-13 48_[+2]_23 chr10:79445990-79446490 2.9e-12 37_[-2]_34 chr22:20496072-20496572 1.2e-10 3_[-2]_68 chr21:8420215-8420715 1.2e-09 70_[-2]_1 chr22:44332071-44332571 5.1e-09 46_[-2]_25 chr17:59964216-59964716 6.6e-09 21_[+2]_50 chr5:77644686-77645186 1.5e-08 50_[-2]_21 chr19:32745696-32746196 3.8e-08 [+2]_71 chr19:38336502-38337002 4.2e-08 17_[+2]_54 chr22:36481103-36481603 4.7e-08 26_[+2]_45 chr19:35986947-35987447 6.5e-08 3_[-2]_68 chr10:95183831-95184331 7.3e-08 8_[+2]_63 chr6:83853374-83853874 1.2e-07 4_[-2]_67 chrUn_KI270467v1:3101-36 1.5e-07 52_[-2]_19 chr17:67993803-67994303 1.5e-07 67_[+2]_4 chr6:132401553-132402053 1.8e-07 8_[+2]_63 chr19:43503609-43504109 2e-07 5_[-2]_66 chr14:64986748-64987248 2.5e-07 24_[-2]_47 chr10:100654882-10065538 2.5e-07 47_[-2]_24 chr19:46638760-46639260 3e-07 16_[+2]_55 chr12:107317719-10731821 3.6e-07 64_[+2]_7 chr17:50272762-50273262 3.6e-07 24_[+2]_47 chr10:91410311-91410811 4e-07 1_[+2]_70 chr17:5191925-5192425 5.3e-07 62_[-2]_9 chr2:61016978-61017478 5.8e-07 27_[+2]_44 chr5:132490378-132490878 6.4e-07 52_[+2]_19 chr16:29816015-29816515 8.4e-07 42_[-2]_29 chr4:77075873-77076373 8.4e-07 14_[-2]_57 chr19:41940432-41940932 8.4e-07 43_[+2]_28 chr11:112024957-11202545 9.2e-07 36_[-2]_35 chrUn_GL000216v2:312-812 1e-06 59_[-2]_12 chrUn_KI270466v1:187-687 1.2e-06 63_[-2]_8 chr16:2883255-2883755 1.4e-06 68_[-2]_3 chr18:49561322-49561822 1.7e-06 37_[+2]_34 chrUn_KI270467v1:1995-24 2.4e-06 32_[-2]_39 chr1:125179940-125180440 3.6e-06 37_[-2]_34 chr6:159169708-159170208 3.6e-06 68_[+2]_3 chr2:196593412-196593912 3.6e-06 6_[+2]_65 chr12:65278090-65278590 3.9e-06 16_[-2]_55 chr2:176188134-176188634 4.5e-06 61_[-2]_10 chr17:77373599-77374099 5.7e-06 26_[-2]_45 chrUn_KI270467v1:2896-33 6.7e-06 48_[-2]_23 chr19:45862594-45863094 7.2e-06 7_[+2]_64 chr19:37779000-37779500 7.7e-06 56_[-2]_15 chr17:38751701-38752201 1.2e-05 41_[+2]_30 chr12:68686216-68686716 1.2e-05 50_[-2]_21 chr19:41218486-41218986 1.4e-05 18_[-2]_53 chr6:44246458-44246958 2.1e-05 71_[-2] chr6:28725750-28726250 2.1e-05 24_[+2]_47 chr1:32292127-32292627 3.4e-05 52_[+2]_19 chr20:2840211-2840711 3.6e-05 58_[-2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARASARRGASRGAGAGMGRGAGAGRVARA width=29 seqs=60 chr16:981060-981560 ( 45) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr15:34515070-34515570 ( 14) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr21:8230446-8230946 ( 35) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr21:8228475-8228975 ( 36) AGAGAGAGAGAGAGAGAGAGAGAGAGAGA 1 chr5:160312660-160313160 ( 59) AAAAAAAAAAAAAGAGAGAGAGAAAGAAA 1 chr19:51688631-51689131 ( 65) AAAGAGGGAGAGAGAGAGAGAGAGAACGA 1 chr7:76281021-76281521 ( 26) AGAGAGAGAGAGACAGAGAGACAGAAAAA 1 chr9:136133407-136133907 ( 45) AGACAGAGATAGAGAGAGATAGAGAGGGA 1 chr19:37293457-37293957 ( 68) GGAGAGAGACAGAGAGAGAGAGAGAGAGA 1 chr19:32746642-32747142 ( 49) AGAGAGAGAGAGAGAGAGGGAGAGACTGG 1 chr10:79445990-79446490 ( 38) AGACAAGAAGAGTGAGAGAAAGAGAAGGA 1 chr22:20496072-20496572 ( 4) AATGAGAGAGTGAAGGAGGGAGGGAATGA 1 chr21:8420215-8420715 ( 71) AGGCAGAGAAAGAGAGTAAGACAGAAGGC 1 chr22:44332071-44332571 ( 47) AAGGAAGGAGGAAGGGAGGGAGGAAGGAA 1 chr17:59964216-59964716 ( 22) AGACAAGAAAGAGGAGAAAAAAGGGAAGA 1 chr5:77644686-77645186 ( 51) AAAAGGGGAGAGAGAAAGGGAAAGGAGCG 1 chr19:32745696-32746196 ( 1) TGACAGAGAGTGGGAGAGAGACTGGCTGA 1 chr19:38336502-38337002 ( 18) AGAGGGGGACTGTCAAAGCGAGAAATAGA 1 chr22:36481103-36481603 ( 27) AAGGAGGAACTAAGAGTGTGAGAGGAACC 1 chr19:35986947-35987447 ( 4) GGACAGAGACAGAGAGAGGTGGGGGAGAC 1 chr10:95183831-95184331 ( 9) AGCAGAAGATGGAGAGATGGAGAAGCAGC 1 chr6:83853374-83853874 ( 5) AGTGGGGGATGGAGAGTTGGAGGGGAGGA 1 chrUn_KI270467v1:3101-36 ( 53) AAATATATATTGTAAACTGTACATAAAAT 1 chr17:67993803-67994303 ( 68) AGAAGGAAGAAGAGGGAAGGGGAGGCTGA 1 chr6:132401553-132402053 ( 9) GGAAAGAAAGGGAGGAGGAGGCAGGAGGA 1 chr19:43503609-43504109 ( 6) AGACAGGTAGACAGGTAGAGGGAAACCAG 1 chr14:64986748-64987248 ( 25) GGAGGAAGATGGAGGGCAATAGTAGGTGA 1 chr10:100654882-10065538 ( 48) AGACCGAGACGCAGAGTGACAGACAGAAA 1 chr19:46638760-46639260 ( 17) AGCTAGGGACTCAGAGAGACAGAGACGGG 1 chr12:107317719-10731821 ( 65) AAGTGGGAATAGAGAGGGAGGAAAACCAT 1 chr17:50272762-50273262 ( 25) AATATAAGACAGAGAACATGACTGGGAGA 1 chr10:91410311-91410811 ( 2) AGGGAAGGAGTCAGAGCGCGAGAAGCTGC 1 chr17:5191925-5192425 ( 63) AAACAAAACAAAAGGGCAGAACAAAAACG 1 chr2:61016978-61017478 ( 28) AAGGGAAGAGGGAAGACTAAAGACAACGC 1 chr5:132490378-132490878 ( 53) AGTGGAAGAGGGAAGAAGGCAGAGGTTGC 1 chr16:29816015-29816515 ( 43) AAAGAGGGAAAGGGGGAGGAGAGGGACGG 1 chr4:77075873-77076373 ( 15) GGGGAGGAACAGGAAGGGTGAAAGACCAA 1 chr19:41940432-41940932 ( 44) GAAGGAAAAGAGAAAGCGGGAGGGGGCCG 1 chr11:112024957-11202545 ( 37) AATAACAGACGGAAAGGGGTGGAAAGTGG 1 chrUn_GL000216v2:312-812 ( 60) AATGGAATGGAATCAACGGGAGTGGAAAA 1 chrUn_KI270466v1:187-687 ( 64) AAATATATATTATATGCTGTACATAAAAT 1 chr16:2883255-2883755 ( 69) GGTGGGGAAGGAGGGGCGAGAGGCAAAGA 1 chr18:49561322-49561822 ( 38) AGGCGGGAAGGGAGGGAGAAGAGGAGGAC 1 chrUn_KI270467v1:1995-24 ( 33) AAAGATATATTATATTCTGTACATAAAAT 1 chr1:125179940-125180440 ( 38) AAACGGAAAAAAACGGAATTATCGAATGG 1 chr6:159169708-159170208 ( 69) AGGCACAGCGGGGAAAAAAGGAAAAGAAA 1 chr2:196593412-196593912 ( 7) AGGCGGGGGCAGAGGACAGGAGGGACAGC 1 chr12:65278090-65278590 ( 17) AGTGGGAAACGGACAAACCAACACGAAGA 1 chr2:176188134-176188634 ( 62) GGACAGGTATTGGGCGAGGTGGGGGGAGA 1 chr17:77373599-77374099 ( 27) TGGCAAACACAAACAACAATAAAAGGAAG 1 chrUn_KI270467v1:2896-33 ( 49) AAATATATATTACATACTGTACATAAAAT 1 chr19:45862594-45863094 ( 8) AGAGGTGGGGGAAAAAGCAAAGAGGCCGA 1 chr19:37779000-37779500 ( 57) TGACAGAGAAACTGCGTGTGAGAGGCTGG 1 chr17:38751701-38752201 ( 42) AAATAAGTGGAACCCGGGGGAGAAAGGGA 1 chr12:68686216-68686716 ( 51) AAAGTAGAAAGGCAAGCGTGAAATATGAT 1 chr19:41218486-41218986 ( 19) AGGCTAGGACAAGCAGAGACACGCAGAGG 1 chr6:44246458-44246958 ( 72) AGGGCGGGACTGGGGGGGACACCGAAAAA 1 chr6:28725750-28726250 ( 25) CAAGGTATACTCTGATAGAAGGAAACCAA 1 chr1:32292127-32292627 ( 53) TGCGAGGAAGGGAGATCGAGGCTGAGACC 1 chr20:2840211-2840711 ( 59) GGACATGGGTGAACGGAAGTGGAAGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.7656 E= 1.2e-079 211 -427 -111 -141 105 -1255 97 -1255 176 -269 -58 -41 -60 -11 58 -83 180 -327 -11 -182 68 -327 81 -60 172 -1255 37 -1255 59 -427 81 -24 229 -327 -169 -1255 -24 -37 37 5 145 -1255 -11 29 59 -169 97 -1255 191 -269 -111 -41 29 -111 97 -1255 184 -269 -28 -182 40 -1255 112 -141 159 -28 -147 -109 5 -327 105 -60 145 -269 18 -83 -24 -195 81 17 214 -1255 -58 -1255 -24 -47 89 -341 195 -327 -69 -109 50 -195 85 -109 184 -1255 18 -1255 111 -47 5 -182 140 -111 -69 5 84 -195 89 -1255 154 -95 -69 -60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 60 E= 1.2e-079 0.766667 0.016667 0.150000 0.066667 0.366667 0.000000 0.633333 0.000000 0.600000 0.050000 0.216667 0.133333 0.116667 0.300000 0.483333 0.100000 0.616667 0.033333 0.300000 0.050000 0.283333 0.033333 0.566667 0.116667 0.583333 0.000000 0.416667 0.000000 0.266667 0.016667 0.566667 0.150000 0.866667 0.033333 0.100000 0.000000 0.150000 0.250000 0.416667 0.183333 0.483333 0.000000 0.300000 0.216667 0.266667 0.100000 0.633333 0.000000 0.666667 0.050000 0.150000 0.133333 0.216667 0.150000 0.633333 0.000000 0.633333 0.050000 0.266667 0.050000 0.233333 0.000000 0.700000 0.066667 0.533333 0.266667 0.116667 0.083333 0.183333 0.033333 0.666667 0.116667 0.483333 0.050000 0.366667 0.100000 0.150000 0.083333 0.566667 0.200000 0.783333 0.000000 0.216667 0.000000 0.150000 0.233333 0.600000 0.016667 0.683333 0.033333 0.200000 0.083333 0.250000 0.083333 0.583333 0.083333 0.633333 0.000000 0.366667 0.000000 0.383333 0.233333 0.333333 0.050000 0.466667 0.150000 0.200000 0.183333 0.316667 0.083333 0.600000 0.000000 0.516667 0.166667 0.200000 0.116667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARASARRGASRGAGAGMGRGAGAGRVARA MEME-2 regular expression -------------------------------------------------------------------------------- A[GA][AG][GC][AG][GA][AG][GA]A[GC][AGT][GA]A[GA][AG][GA][AC]G[AG][GT][AG][GC][AG][GA][AG][AGC][AG][GA][AG] -------------------------------------------------------------------------------- Time 1491.47 secs. ******************************************************************************** ******************************************************************************** MOTIF KRTGTRTGDGWKTGTGTGYRTG MEME-3 width = 22 sites = 30 llr = 443 E-value = 5.7e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1211231:2:312:2::213:3 pos.-specific C :222::1::11::3::::3:2: probability G 351716:7371517:9:7:6:6 matrix T 616:718252547:8:a16:81 bits 2.5 2.2 * 2.0 * 1.7 * * Relative 1.5 * * * * * Entropy 1.2 * * * *** * (21.3 bits) 1.0 * * * * *** * * 0.7 * * ****************** 0.5 * ******************** 0.2 * ******************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus GACCAA TGTATAC ACACA sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:134052050-134052550 - 24 8.63e-14 TTGAGTCCCG TGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTG chr12:57111955-57112455 - 1 8.63e-14 TGCCTGCACG TGTGTGTGTGTGTGTGTGTGTG chr6:166008665-166009165 + 1 6.68e-11 . tgtatgtgtgtgtgtgtgagtg cgcgcgcgcg chr6:40587267-40587767 - 49 8.52e-10 GAGCGTGTGA TCCGTGTGTGTGTGTGTGTGCG TGTGTGTGTG chr21:8420215-8420715 + 14 2.23e-09 tgtctctctc tctctgtgggggtgtgtgtgtg tgtgtgtatg chr19:39320105-39320605 - 24 4.77e-09 CCCGCTCGGG TGTCCATTTGTGTGTGTGTGTG TGTGTGTGTG chr19:39996386-39996886 - 25 4.77e-09 GTGTGTGTAA TTTGAGTGTGAGTCAGTGTGTA GTGAGTGAAG chr19:36686883-36687383 - 22 6.86e-09 GAGCCTTTTA GGTCTGTGGTGTTGTGTGTGTA ACGGGTAAAG chr22:19717643-19718143 - 42 7.72e-09 TGTGTGCGCG TCCGTGCGGGTGTGTGTGTGTA ATGTGTGTGT chr20:52972202-52972702 + 57 1.53e-08 gcatatgtgg ggggtgtgagtgtgtgtgtgcg aggaagcggg chrUn_KI270467v1:2896-33 - 11 2.37e-08 GTACCCAAAT TATGTATTATATACTGTACGTA AATTATCAGA chr8:28401326-28401826 + 2 2.37e-08 g ggtgtatgtgcttgtgtgcacg cgcgcgtgtg chr19:38224255-38224755 - 57 3.99e-08 TCCGTGCGAA GGTGTGTGAGTAGGAGTGTGTG GGAGGCTGTG chr19:32745696-32746196 + 79 5.95e-08 TGGCTGATGT GGTCATTCTGTGTGTGTGTGTG chr16:981060-981560 + 79 6.56e-08 agagagagag agagagagagtgtgtgtgtgtg chr6:157221378-157221878 - 38 7.95e-08 CGCGCGCGTG TACGTGTGTCTGAGTGTGCACG TGTGAGTGTG chrUn_KI270467v1:3101-36 - 15 8.74e-08 GTAGCCAAAA TATATATTGTATACTGTACATA AAATATAAAA chrUn_KI270467v1:1995-24 - 79 8.74e-08 . TATATATTGTATACTGTACATA AAATATGAAG chrUn_KI270466v1:187-687 - 26 9.60e-08 GTACACAAAA TATGTATTATGTACTGTACATA CAATATCAAA chr6:17101393-17101893 + 2 3.03e-07 C ATCGTGTTGGTTTCTGTTCGTG CGACCGTCTT chr19:34253930-34254430 + 30 3.03e-07 cccggatatg tgacaatggtattgtgtattta ccactaagga chr17:59220602-59221102 + 51 3.57e-07 AGAGTTTGAG GAAGAATGGGGTTGTGTGAATT GAGGGCTCTT chr19:37371075-37371575 + 53 4.21e-07 CGCTGGGGAG GCCGTGTGTGTTTCACTGTATT ACCAACTATG chr17:6069708-6070208 + 68 4.94e-07 TGATTCGGGA TGTGTGTGTCAGGCAGTGTGCG GCTGTCGCTG chr9:14322061-14322561 + 27 6.24e-07 TTGAACGCCG TCCAGGATGgtgtgtgtgtgtg cgcccgcgtg chr18:33579003-33579503 + 73 9.80e-07 GTGGCTCCAG TTCGTTTGTGTTTGTAGGTATT GTGCTC chr5:93582516-93583016 + 41 1.22e-06 TTCCCCCTCT GGGGTGTGAGCGTAAgtgtgtg tgtgtgtatg chr19:7691982-7692482 - 73 1.51e-06 TGTGTT GATGGACGTGAATGTGTTCATG ACAGTGGTGT chr1:108746183-108746683 + 8 2.12e-06 ATCCTCC AGTCTTCGTGTATGTGTGAACT CGGAATTTCA chr6:53651744-53652244 - 8 2.12e-06 GCGCGGTCAC GCTGAGCGACAGAGTGTACGTG ATGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:134052050-134052550 8.6e-14 23_[-3]_55 chr12:57111955-57112455 8.6e-14 [-3]_78 chr6:166008665-166009165 6.7e-11 [+3]_78 chr6:40587267-40587767 8.5e-10 48_[-3]_30 chr21:8420215-8420715 2.2e-09 13_[+3]_65 chr19:39320105-39320605 4.8e-09 23_[-3]_55 chr19:39996386-39996886 4.8e-09 24_[-3]_54 chr19:36686883-36687383 6.9e-09 21_[-3]_57 chr22:19717643-19718143 7.7e-09 41_[-3]_37 chr20:52972202-52972702 1.5e-08 56_[+3]_22 chrUn_KI270467v1:2896-33 2.4e-08 10_[-3]_68 chr8:28401326-28401826 2.4e-08 1_[+3]_77 chr19:38224255-38224755 4e-08 56_[-3]_22 chr19:32745696-32746196 5.9e-08 78_[+3] chr16:981060-981560 6.6e-08 78_[+3] chr6:157221378-157221878 7.9e-08 37_[-3]_41 chrUn_KI270467v1:3101-36 8.7e-08 14_[-3]_64 chrUn_KI270467v1:1995-24 8.7e-08 78_[-3] chrUn_KI270466v1:187-687 9.6e-08 25_[-3]_53 chr6:17101393-17101893 3e-07 1_[+3]_77 chr19:34253930-34254430 3e-07 29_[+3]_49 chr17:59220602-59221102 3.6e-07 50_[+3]_28 chr19:37371075-37371575 4.2e-07 52_[+3]_26 chr17:6069708-6070208 4.9e-07 67_[+3]_11 chr9:14322061-14322561 6.2e-07 26_[+3]_52 chr18:33579003-33579503 9.8e-07 72_[+3]_6 chr5:93582516-93583016 1.2e-06 40_[+3]_38 chr19:7691982-7692482 1.5e-06 72_[-3]_6 chr1:108746183-108746683 2.1e-06 7_[+3]_71 chr6:53651744-53652244 2.1e-06 7_[-3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KRTGTRTGDGWKTGTGTGYRTG width=22 seqs=30 chr6:134052050-134052550 ( 24) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111955-57112455 ( 1) TGTGTGTGTGTGTGTGTGTGTG 1 chr6:166008665-166009165 ( 1) TGTATGTGTGTGTGTGTGAGTG 1 chr6:40587267-40587767 ( 49) TCCGTGTGTGTGTGTGTGTGCG 1 chr21:8420215-8420715 ( 14) TCTCTGTGGGGGTGTGTGTGTG 1 chr19:39320105-39320605 ( 24) TGTCCATTTGTGTGTGTGTGTG 1 chr19:39996386-39996886 ( 25) TTTGAGTGTGAGTCAGTGTGTA 1 chr19:36686883-36687383 ( 22) GGTCTGTGGTGTTGTGTGTGTA 1 chr22:19717643-19718143 ( 42) TCCGTGCGGGTGTGTGTGTGTA 1 chr20:52972202-52972702 ( 57) GGGGTGTGAGTGTGTGTGTGCG 1 chrUn_KI270467v1:2896-33 ( 11) TATGTATTATATACTGTACGTA 1 chr8:28401326-28401826 ( 2) GGTGTATGTGCTTGTGTGCACG 1 chr19:38224255-38224755 ( 57) GGTGTGTGAGTAGGAGTGTGTG 1 chr19:32745696-32746196 ( 79) GGTCATTCTGTGTGTGTGTGTG 1 chr16:981060-981560 ( 79) AGAGAGAGAGTGTGTGTGTGTG 1 chr6:157221378-157221878 ( 38) TACGTGTGTCTGAGTGTGCACG 1 chrUn_KI270467v1:3101-36 ( 15) TATATATTGTATACTGTACATA 1 chrUn_KI270467v1:1995-24 ( 79) TATATATTGTATACTGTACATA 1 chrUn_KI270466v1:187-687 ( 26) TATGTATTATGTACTGTACATA 1 chr6:17101393-17101893 ( 2) ATCGTGTTGGTTTCTGTTCGTG 1 chr19:34253930-34254430 ( 30) TGACAATGGTATTGTGTATTTA 1 chr17:59220602-59221102 ( 51) GAAGAATGGGGTTGTGTGAATT 1 chr19:37371075-37371575 ( 53) GCCGTGTGTGTTTCACTGTATT 1 chr17:6069708-6070208 ( 68) TGTGTGTGTCAGGCAGTGTGCG 1 chr9:14322061-14322561 ( 27) TCCAGGATGGTGTGTGTGTGTG 1 chr18:33579003-33579503 ( 73) TTCGTTTGTGTTTGTAGGTATT 1 chr5:93582516-93583016 ( 41) GGGGTGTGAGCGTAAGTGTGTG 1 chr19:7691982-7692482 ( 73) GATGGACGTGAATGTGTTCATG 1 chr1:108746183-108746683 ( 8) AGTCTTCGTGTATGTGTGAACT 1 chr6:53651744-53652244 ( 8) GCTGAGCGACAGAGTGTACGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.9 E= 5.7e-027 -83 -1155 5 168 40 -69 53 -83 -83 -47 -227 176 -41 -69 105 -1155 17 -327 -227 198 76 -1155 89 -83 -141 -127 -1155 217 -1155 -327 118 40 40 -1155 -11 140 -1155 -169 112 17 59 -227 -127 159 -83 -1155 72 105 17 -1155 -227 205 -241 -28 112 -1155 -9 -1155 -1155 223 -241 -327 153 -1155 -1155 -1155 -327 245 17 -1155 118 -141 -83 -11 -1155 176 91 -1155 97 -241 -1155 -69 -1155 217 59 -1155 89 -41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 30 E= 5.7e-027 0.100000 0.000000 0.333333 0.566667 0.233333 0.200000 0.466667 0.100000 0.100000 0.233333 0.066667 0.600000 0.133333 0.200000 0.666667 0.000000 0.200000 0.033333 0.066667 0.700000 0.300000 0.000000 0.600000 0.100000 0.066667 0.133333 0.000000 0.800000 0.000000 0.033333 0.733333 0.233333 0.233333 0.000000 0.300000 0.466667 0.000000 0.100000 0.700000 0.200000 0.266667 0.066667 0.133333 0.533333 0.100000 0.000000 0.533333 0.366667 0.200000 0.000000 0.066667 0.733333 0.033333 0.266667 0.700000 0.000000 0.166667 0.000000 0.000000 0.833333 0.033333 0.033333 0.933333 0.000000 0.000000 0.000000 0.033333 0.966667 0.200000 0.000000 0.733333 0.066667 0.100000 0.300000 0.000000 0.600000 0.333333 0.000000 0.633333 0.033333 0.000000 0.200000 0.000000 0.800000 0.266667 0.000000 0.600000 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KRTGTRTGDGWKTGTGTGYRTG MEME-3 regular expression -------------------------------------------------------------------------------- [TG][GAC][TC][GC][TA][GA]T[GT][TGA][GT][TA][GT][TA][GC]TGT[GA][TC][GA][TC][GA] -------------------------------------------------------------------------------- Time 2171.18 secs. ******************************************************************************** ******************************************************************************** MOTIF YCYCYSTCYCTYYCTC MEME-4 width = 16 sites = 79 llr = 768 E-value = 3.2e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCYCYSTCYCTYYCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::11::1:::21:: pos.-specific C 6757532647364818 probability G :::3:4:1:1:1:::2 matrix T 434:42835273419: bits 2.5 2.2 2.0 * 1.7 * * Relative 1.5 * * * Entropy 1.2 * * * (14.0 bits) 1.0 * * * ** 0.7 ***** * ******** 0.5 ***** ********** 0.2 ***** ********** 0.0 ---------------- Multilevel CCCCCGTCTCTCTCTC consensus TTTGTC TCTCTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYCYSTCYCTYYCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr15:34515070-34515570 + 44 8.69e-10 tctctctctc tctctctctctctctc tctgtgtgtg chr9:136133407-136133907 - 74 6.69e-09 TCTCTCCCTC TCTCCCTCTCTCTCTC TCCCTCTCTA chr7:76281021-76281521 + 67 6.69e-09 tctctttctg tctctgtctctccctc tttcctcttt chr21:8228475-8228975 + 70 1.47e-08 tctctctctc tctctgtctctcactc tctgtgtgta chr19:46638760-46639260 - 58 8.90e-08 GTCTCTGCCT CTCCTGTCCCTCTCTC CGCAGCGCCC chr5:77644686-77645186 + 80 3.18e-07 CTCCCCTTTT TCTCCTTCCCTCCCTC TCTTC chr10:100654882-10065538 + 7 3.18e-07 CTAGCC CTCCCCTCTTTCTCTC TGCAGTGTTT chr19:51688631-51689131 - 4 5.33e-07 TTTTGCTGCC TCTCTGTGTCTCTTTC CGT chr10:100655804-10065630 + 29 6.40e-07 ctgcctcaaa cctccatccttctctc cCTGGCCAGC chr21:8230446-8230946 + 79 1.21e-06 tctctgtctg tctgtttctctctatc tctcgc chr17:6651806-6652306 + 59 1.21e-06 AGCGAGGGGC CCTCCCTCTCCCCCTC GGGGAAGCGG chr12:389156-389656 + 31 1.40e-06 GTGTCTGGCC TTTCCTTCTTCTTCTC TTCCCCGGCA chr9:34522404-34522904 + 18 1.40e-06 CATGGACGTG TCCCTATCCCCTTCTC CGTGGGGTCT chr7:33129447-33129947 + 13 1.40e-06 TTCACCGCCT CCTCCATCCTTTCCTC CTCGGTGTGA chr3:11096289-11096789 + 68 1.63e-06 ATTCAAGCCC TTTCTGTTCCTTCATC CTGCCTGGAT chr22:44332071-44332571 + 15 1.63e-06 ccttctactt ttcccttccctctttc cgctttcctg chr8:120444998-120445498 + 24 2.18e-06 CACTTGTCGG CTTCTCCCTCTTCCTC GAGTTTCCTC chr1:171741522-171742022 + 2 2.18e-06 C CTCGTCTTCCTTCCTC ACGGCACCCC chr15:89690305-89690805 - 37 2.18e-06 GTGCCAGCGG CCTCCGCCCCTTTCTC GCCCTAACTC chr19:35900135-35900635 + 53 2.18e-06 GTCTTTCGAT CCTCAGTCCCTCACTC TCTTAGGGGG chr14:30559082-30559582 - 27 3.29e-06 ACCCCACGGT CCTGCTTCTCTCTCTG GAACGTTCTG chr20:58650983-58651483 - 16 3.74e-06 CCTGGCCCTC TTCCTGTCCGTCCCTC GCGAGTGCCC chr13:46211796-46212296 - 78 4.26e-06 TTTTCGT CTCCTATCTCCTTTTC CTCGGAATCT chr16:30021265-30021765 - 19 4.26e-06 GCTCCCTGCA CCTCCGTTTCCTCTTC TGTGGCCGGC chr1:151790100-151790600 + 57 4.26e-06 TGCCCATGAC CCTGTCTTTCCCACTC CCCAAACCTT chr19:37906698-37907198 - 16 4.82e-06 CGGCGGAACC TCTCCCTCACTCTCTG CCAGGCTCGA chr12:24562182-24562682 + 51 5.47e-06 GTTTTGGTGG CTCGCCTTTTTCACTC tgtgtgtgtg chr17:50272762-50273262 - 6 5.47e-06 TTATATTTAA CCCCTCTGTGTCTCTC CCCGT chr7:100852760-100853260 + 37 6.14e-06 TGGGAGCCGG TCTGTGTTTCTGTTTC GCTAGGGTGT chr19:38335835-38336335 - 20 6.94e-06 ACGTTCGGCT CCCCCTTTCCCTCCTC TGCCAGCTCC chr6:132401553-132402053 - 74 7.76e-06 CTCTTGCCCT CCTCCTTTTCCCTCTG CCTCTGGCCT chr8:7092049-7092549 - 70 7.76e-06 GACCCCCGCG CCCGCGTCACTTACTC CTCTGCCGTC chr22:20496072-20496572 + 65 7.76e-06 ccattccctt cctccctcactcattc actccctccc chr16:54284918-54285418 + 39 7.76e-06 aggccctcgc cccccgtgtcctcctc ctcccccccg chr1:168137106-168137606 + 25 8.73e-06 CTCCGCACAG TCCCATTCTCCTCCTC CAGTCCCGCC chr1:145927019-145927519 - 59 9.72e-06 ATAGGAAAAT TTACTCTTTTTTCCTC GGTCGTAAGG chr19:29525417-29525917 - 77 1.09e-05 ATCCCTGC TCCCCGTGTGTCCCTC GGTCCTCTCT chr19:12790045-12790545 - 41 1.09e-05 GGAGCCCGGC CCTGTCTCCGTCACTC GGATCCTACG chr3:133038346-133038846 + 40 1.09e-05 GTTGCCTTGG TTTCCCTTTTCCTATC CTCTCAGGCA chr19:40420971-40421471 + 41 1.21e-05 ACCGTCCAGC CCCCTGCGCCTCTCTC CATGCGCACC chr12:6533958-6534458 + 30 1.35e-05 CGTGTAAGGG TCCCCGTCCTTGACTC CCTAGTGTCC chr12:64404505-64405005 - 82 1.35e-05 CCT TCCCTATCACTCCATC CCGCCTCCCA chr19:37293457-37293957 - 36 1.66e-05 GCTCTTTCGG TCGCCCTCTCTTTCTG TCTCTGTCCG chr19:35717054-35717554 - 71 1.66e-05 AGGGTCGGAG CACGCGTTCCTCTCTC TCCCGGGCCG chr22_KI270733v1_random: + 48 1.66e-05 AGAGGACCCT CCTCCGCTTCCCCCTC GACGGGGTTG chr17:77528686-77529186 + 64 1.83e-05 GGGGCTGGGA TCCGCGTGCCCCTCTC TGCCTCGGTG chr19:33293429-33293929 + 4 1.83e-05 CAT CCCCACCCCCTTTCTC TGAGCAGGGG chr12:53499060-53499560 + 15 2.03e-05 GGGTCCAGGT CCCCAGTTCCTCCATC CCCACAGCCT chr17:38558990-38559490 - 26 2.03e-05 TCCTTCCTGC CCTGCATCCCTTTCCC TGAGTCAGCG chr12:123457989-12345848 - 69 2.23e-05 CTGGGCCGCA CTCCCTCTTCCTTCTC TCCGGCGTGG chr20:62972382-62972882 - 5 2.23e-05 TCCCTCGCAA CCCGTTCCCTTCTCTC ACAG chr12:109995852-10999635 - 80 2.69e-05 CCGCT CCCCTCTGCTTTCCTG GCCCGGACCC chr1:110407546-110408046 + 13 2.69e-05 CGGTGCAACG TCCGCGTTCTTTACTG GAAAACATCA chr19:38336502-38337002 - 70 3.24e-05 TTCCGCCCCC TCCCTGTATTCCACTC TTGCTCTTCA chr19:32746642-32747142 - 2 3.24e-05 ACCACATCAG CCAGTCTCTCTCCTTC T chr6:158869949-158870449 - 81 3.55e-05 CACC CTTCTGTCCCCCACCC ACAACTGTGA chr19:53537501-53538001 - 75 3.55e-05 TCCCATCCCT TTCCCTCCTCCCACTC TCCCAAAGCC chr2:109128473-109128973 - 34 3.55e-05 GCGGCGTTAT CCCGACTGCCTTCCTC GCCAGCGCCG chr17:38751701-38752201 - 82 3.87e-05 TCT TTCGCCTCCCTCCCCC ATCAGGATCC chr3:50226955-50227455 - 1 3.87e-05 CCCAGTGACA CCCGCCTTTCTGCTTC chr6:43454637-43455137 - 7 3.87e-05 TCCGGCCGTC CATCCGTCCGTCCCTC CTGGGG chr17:59619484-59619984 + 47 3.87e-05 GTCCCTCCGG TTCCTCTGTTTCCCCC CATGTGGCGT chr12:53006524-53007024 - 44 3.87e-05 CCCGCACACC TTTCTGCGCCTCCTTC CCCAATTCAA chr7:112790001-112790501 - 28 4.23e-05 AGGCTGAAGC CTTGTCTGCTCTCCTC CTTTTTGGTT chr15:70100421-70100921 - 7 4.23e-05 AGAGACAGAG CTGCTGTCCTTTTCTG TACACA chr6:70956040-70956540 - 64 4.60e-05 TCACCCCGCG CCCCTACTTCTCTCCC TACGCGGTGG chr2:71226561-71227061 - 80 4.60e-05 GGCGC CCTGCGCCTCCCTTTC TGCCGCCGTC chr18:57434064-57434564 + 77 5.01e-05 CGTCTGCCCA CCGCCGTTTCTCTCCC GGGATTTG chr10:79445990-79446490 + 72 5.01e-05 TGTCTCCTTT CTTCTATTTCCGTCTG GTCTGATGTT chr19:35154679-35155179 + 49 5.44e-05 CCCACATCTC TCTGCCTCCTCTCCTG GGCTACAGTG chr17:67993803-67994303 - 26 6.91e-05 CCCCGACGGC CTCCCCTCACTGCTTC TCCTCCCCCA chr1:151008466-151008966 + 14 6.91e-05 AGGTAACGAA TCCCTGTCTGTGACTG TAAGGAATGG chr20:2207034-2207534 + 18 6.91e-05 TCCTCCAGCC CCCGCTTCCCTTCATG TCGGAGGTCC chr14:22982544-22983044 - 24 6.91e-05 GCCCCAACTG CCCCTGCCCGCCTCTC ACGTCCAGTC chr18:267641-268141 + 24 7.47e-05 CGGACACACC TCTGTCTCACTTTACC CCAGGGCAAA chr3:160756446-160756946 - 53 7.47e-05 CCCGGGGTAG CTCCTACCTCTCCCCC GTGCCCGTCG chr17:48817215-48817715 - 31 8.05e-05 ATTCAAGGTG CCCCCCTCCCTCACCG CAGCCCCGCG chr17:56594430-56594930 - 19 9.34e-05 ACCACAGCCA CATCTGTAACTTCCTC CGCAGCTTCT chr12:12266913-12267413 - 82 1.52e-04 CCC TCCCAGTTCGCCTCTG CTAGCCCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYCYSTCYCTYYCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:34515070-34515570 8.7e-10 43_[+4]_41 chr9:136133407-136133907 6.7e-09 73_[-4]_11 chr7:76281021-76281521 6.7e-09 66_[+4]_18 chr21:8228475-8228975 1.5e-08 69_[+4]_15 chr19:46638760-46639260 8.9e-08 57_[-4]_27 chr5:77644686-77645186 3.2e-07 79_[+4]_5 chr10:100654882-10065538 3.2e-07 6_[+4]_78 chr19:51688631-51689131 5.3e-07 3_[-4]_81 chr10:100655804-10065630 6.4e-07 28_[+4]_56 chr21:8230446-8230946 1.2e-06 78_[+4]_6 chr17:6651806-6652306 1.2e-06 58_[+4]_26 chr12:389156-389656 1.4e-06 30_[+4]_54 chr9:34522404-34522904 1.4e-06 17_[+4]_67 chr7:33129447-33129947 1.4e-06 12_[+4]_72 chr3:11096289-11096789 1.6e-06 67_[+4]_17 chr22:44332071-44332571 1.6e-06 14_[+4]_70 chr8:120444998-120445498 2.2e-06 23_[+4]_61 chr1:171741522-171742022 2.2e-06 1_[+4]_83 chr15:89690305-89690805 2.2e-06 36_[-4]_48 chr19:35900135-35900635 2.2e-06 52_[+4]_32 chr14:30559082-30559582 3.3e-06 26_[-4]_58 chr20:58650983-58651483 3.7e-06 15_[-4]_69 chr13:46211796-46212296 4.3e-06 77_[-4]_7 chr16:30021265-30021765 4.3e-06 18_[-4]_66 chr1:151790100-151790600 4.3e-06 56_[+4]_28 chr19:37906698-37907198 4.8e-06 15_[-4]_69 chr12:24562182-24562682 5.5e-06 50_[+4]_34 chr17:50272762-50273262 5.5e-06 5_[-4]_79 chr7:100852760-100853260 6.1e-06 36_[+4]_48 chr19:38335835-38336335 6.9e-06 19_[-4]_65 chr6:132401553-132402053 7.8e-06 73_[-4]_11 chr8:7092049-7092549 7.8e-06 69_[-4]_15 chr22:20496072-20496572 7.8e-06 64_[+4]_20 chr16:54284918-54285418 7.8e-06 38_[+4]_46 chr1:168137106-168137606 8.7e-06 24_[+4]_60 chr1:145927019-145927519 9.7e-06 58_[-4]_26 chr19:29525417-29525917 1.1e-05 76_[-4]_8 chr19:12790045-12790545 1.1e-05 40_[-4]_44 chr3:133038346-133038846 1.1e-05 39_[+4]_45 chr19:40420971-40421471 1.2e-05 40_[+4]_44 chr12:6533958-6534458 1.3e-05 29_[+4]_55 chr12:64404505-64405005 1.3e-05 81_[-4]_3 chr19:37293457-37293957 1.7e-05 35_[-4]_49 chr19:35717054-35717554 1.7e-05 70_[-4]_14 chr22_KI270733v1_random: 1.7e-05 47_[+4]_37 chr17:77528686-77529186 1.8e-05 63_[+4]_21 chr19:33293429-33293929 1.8e-05 3_[+4]_81 chr12:53499060-53499560 2e-05 14_[+4]_70 chr17:38558990-38559490 2e-05 25_[-4]_59 chr12:123457989-12345848 2.2e-05 68_[-4]_16 chr20:62972382-62972882 2.2e-05 4_[-4]_80 chr12:109995852-10999635 2.7e-05 79_[-4]_5 chr1:110407546-110408046 2.7e-05 12_[+4]_72 chr19:38336502-38337002 3.2e-05 69_[-4]_15 chr19:32746642-32747142 3.2e-05 1_[-4]_83 chr6:158869949-158870449 3.6e-05 80_[-4]_4 chr19:53537501-53538001 3.6e-05 74_[-4]_10 chr2:109128473-109128973 3.6e-05 33_[-4]_51 chr17:38751701-38752201 3.9e-05 81_[-4]_3 chr3:50226955-50227455 3.9e-05 [-4]_84 chr6:43454637-43455137 3.9e-05 6_[-4]_78 chr17:59619484-59619984 3.9e-05 46_[+4]_38 chr12:53006524-53007024 3.9e-05 43_[-4]_41 chr7:112790001-112790501 4.2e-05 27_[-4]_57 chr15:70100421-70100921 4.2e-05 6_[-4]_78 chr6:70956040-70956540 4.6e-05 63_[-4]_21 chr2:71226561-71227061 4.6e-05 79_[-4]_5 chr18:57434064-57434564 5e-05 76_[+4]_8 chr10:79445990-79446490 5e-05 71_[+4]_13 chr19:35154679-35155179 5.4e-05 48_[+4]_36 chr17:67993803-67994303 6.9e-05 25_[-4]_59 chr1:151008466-151008966 6.9e-05 13_[+4]_71 chr20:2207034-2207534 6.9e-05 17_[+4]_67 chr14:22982544-22983044 6.9e-05 23_[-4]_61 chr18:267641-268141 7.5e-05 23_[+4]_61 chr3:160756446-160756946 7.5e-05 52_[-4]_32 chr17:48817215-48817715 8.1e-05 30_[-4]_54 chr17:56594430-56594930 9.3e-05 18_[-4]_66 chr12:12266913-12267413 0.00015 81_[-4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYCYSTCYCTYYCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCYCYSTCYCTYYCTC width=16 seqs=79 chr15:34515070-34515570 ( 44) TCTCTCTCTCTCTCTC 1 chr9:136133407-136133907 ( 74) TCTCCCTCTCTCTCTC 1 chr7:76281021-76281521 ( 67) TCTCTGTCTCTCCCTC 1 chr21:8228475-8228975 ( 70) TCTCTGTCTCTCACTC 1 chr19:46638760-46639260 ( 58) CTCCTGTCCCTCTCTC 1 chr5:77644686-77645186 ( 80) TCTCCTTCCCTCCCTC 1 chr10:100654882-10065538 ( 7) CTCCCCTCTTTCTCTC 1 chr19:51688631-51689131 ( 4) TCTCTGTGTCTCTTTC 1 chr10:100655804-10065630 ( 29) CCTCCATCCTTCTCTC 1 chr21:8230446-8230946 ( 79) TCTGTTTCTCTCTATC 1 chr17:6651806-6652306 ( 59) CCTCCCTCTCCCCCTC 1 chr12:389156-389656 ( 31) TTTCCTTCTTCTTCTC 1 chr9:34522404-34522904 ( 18) TCCCTATCCCCTTCTC 1 chr7:33129447-33129947 ( 13) CCTCCATCCTTTCCTC 1 chr3:11096289-11096789 ( 68) TTTCTGTTCCTTCATC 1 chr22:44332071-44332571 ( 15) TTCCCTTCCCTCTTTC 1 chr8:120444998-120445498 ( 24) CTTCTCCCTCTTCCTC 1 chr1:171741522-171742022 ( 2) CTCGTCTTCCTTCCTC 1 chr15:89690305-89690805 ( 37) CCTCCGCCCCTTTCTC 1 chr19:35900135-35900635 ( 53) CCTCAGTCCCTCACTC 1 chr14:30559082-30559582 ( 27) CCTGCTTCTCTCTCTG 1 chr20:58650983-58651483 ( 16) TTCCTGTCCGTCCCTC 1 chr13:46211796-46212296 ( 78) CTCCTATCTCCTTTTC 1 chr16:30021265-30021765 ( 19) CCTCCGTTTCCTCTTC 1 chr1:151790100-151790600 ( 57) CCTGTCTTTCCCACTC 1 chr19:37906698-37907198 ( 16) TCTCCCTCACTCTCTG 1 chr12:24562182-24562682 ( 51) CTCGCCTTTTTCACTC 1 chr17:50272762-50273262 ( 6) CCCCTCTGTGTCTCTC 1 chr7:100852760-100853260 ( 37) TCTGTGTTTCTGTTTC 1 chr19:38335835-38336335 ( 20) CCCCCTTTCCCTCCTC 1 chr6:132401553-132402053 ( 74) CCTCCTTTTCCCTCTG 1 chr8:7092049-7092549 ( 70) CCCGCGTCACTTACTC 1 chr22:20496072-20496572 ( 65) CCTCCCTCACTCATTC 1 chr16:54284918-54285418 ( 39) CCCCCGTGTCCTCCTC 1 chr1:168137106-168137606 ( 25) TCCCATTCTCCTCCTC 1 chr1:145927019-145927519 ( 59) TTACTCTTTTTTCCTC 1 chr19:29525417-29525917 ( 77) TCCCCGTGTGTCCCTC 1 chr19:12790045-12790545 ( 41) CCTGTCTCCGTCACTC 1 chr3:133038346-133038846 ( 40) TTTCCCTTTTCCTATC 1 chr19:40420971-40421471 ( 41) CCCCTGCGCCTCTCTC 1 chr12:6533958-6534458 ( 30) TCCCCGTCCTTGACTC 1 chr12:64404505-64405005 ( 82) TCCCTATCACTCCATC 1 chr19:37293457-37293957 ( 36) TCGCCCTCTCTTTCTG 1 chr19:35717054-35717554 ( 71) CACGCGTTCCTCTCTC 1 chr22_KI270733v1_random: ( 48) CCTCCGCTTCCCCCTC 1 chr17:77528686-77529186 ( 64) TCCGCGTGCCCCTCTC 1 chr19:33293429-33293929 ( 4) CCCCACCCCCTTTCTC 1 chr12:53499060-53499560 ( 15) CCCCAGTTCCTCCATC 1 chr17:38558990-38559490 ( 26) CCTGCATCCCTTTCCC 1 chr12:123457989-12345848 ( 69) CTCCCTCTTCCTTCTC 1 chr20:62972382-62972882 ( 5) CCCGTTCCCTTCTCTC 1 chr12:109995852-10999635 ( 80) CCCCTCTGCTTTCCTG 1 chr1:110407546-110408046 ( 13) TCCGCGTTCTTTACTG 1 chr19:38336502-38337002 ( 70) TCCCTGTATTCCACTC 1 chr19:32746642-32747142 ( 2) CCAGTCTCTCTCCTTC 1 chr6:158869949-158870449 ( 81) CTTCTGTCCCCCACCC 1 chr19:53537501-53538001 ( 75) TTCCCTCCTCCCACTC 1 chr2:109128473-109128973 ( 34) CCCGACTGCCTTCCTC 1 chr17:38751701-38752201 ( 82) TTCGCCTCCCTCCCCC 1 chr3:50226955-50227455 ( 1) CCCGCCTTTCTGCTTC 1 chr6:43454637-43455137 ( 7) CATCCGTCCGTCCCTC 1 chr17:59619484-59619984 ( 47) TTCCTCTGTTTCCCCC 1 chr12:53006524-53007024 ( 44) TTTCTGCGCCTCCTTC 1 chr7:112790001-112790501 ( 28) CTTGTCTGCTCTCCTC 1 chr15:70100421-70100921 ( 7) CTGCTGTCCTTTTCTG 1 chr6:70956040-70956540 ( 64) CCCCTACTTCTCTCCC 1 chr2:71226561-71227061 ( 80) CCTGCGCCTCCCTTTC 1 chr18:57434064-57434564 ( 77) CCGCCGTTTCTCTCCC 1 chr10:79445990-79446490 ( 72) CTTCTATTTCCGTCTG 1 chr19:35154679-35155179 ( 49) TCTGCCTCCTCTCCTG 1 chr17:67993803-67994303 ( 26) CTCCCCTCACTGCTTC 1 chr1:151008466-151008966 ( 14) TCCCTGTCTGTGACTG 1 chr20:2207034-2207534 ( 18) CCCGCTTCCCTTCATG 1 chr14:22982544-22983044 ( 24) CCCCTGCCCGCCTCTC 1 chr18:267641-268141 ( 24) TCTGTCTCACTTTACC 1 chr3:160756446-160756946 ( 53) CTCCTACCTCTCCCCC 1 chr17:48817215-48817715 ( 31) CCCCCCTCCCTCACCG 1 chr17:56594430-56594930 ( 19) CATCTGTAACTTCCTC 1 chr12:12266913-12267413 ( 82) TCCCAGTTCGCCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYCYSTCYCTYYCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.7995 E= 3.2e-013 -1295 88 -1295 119 -222 106 -1295 72 -281 61 -309 132 -1295 116 -21 -1295 -122 58 -1295 132 -64 8 28 -22 -1295 -97 -1295 224 -281 85 -121 51 -100 46 -1295 140 -1295 111 -167 19 -1295 -15 -1295 200 -1295 85 -209 95 0 28 -1295 128 -100 126 -1295 -35 -1295 -150 -1295 232 -1295 137 -97 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYCYSTCYCTYYCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 79 E= 3.2e-013 0.000000 0.594937 0.000000 0.405063 0.037975 0.670886 0.000000 0.291139 0.025316 0.493671 0.037975 0.443038 0.000000 0.721519 0.278481 0.000000 0.075949 0.481013 0.000000 0.443038 0.113924 0.341772 0.392405 0.151899 0.000000 0.164557 0.000000 0.835443 0.025316 0.582278 0.139241 0.253165 0.088608 0.443038 0.000000 0.468354 0.000000 0.696203 0.101266 0.202532 0.000000 0.291139 0.000000 0.708861 0.000000 0.582278 0.075949 0.341772 0.177215 0.392405 0.000000 0.430380 0.088608 0.772152 0.000000 0.139241 0.000000 0.113924 0.000000 0.886076 0.000000 0.835443 0.164557 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYCYSTCYCTYYCTC MEME-4 regular expression -------------------------------------------------------------------------------- [CT][CT][CT][CG][CT][GC]T[CT][TC][CT][TC][CT][TC]CTC -------------------------------------------------------------------------------- Time 2847.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGTGTG MEME-5 width = 12 sites = 23 llr = 277 E-value = 6.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::12::: pos.-specific C ::2:::22::31 probability G :91a:a:7:a:9 matrix T 917:a:8:8:7: bits 2.5 2.2 * 2.0 * * 1.7 * ** ** Relative 1.5 * **** *** Entropy 1.2 ** **** *** (17.4 bits) 1.0 ******* **** 0.7 ******* **** 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel TGTGTGTGTGTG consensus C CC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr20:52972202-52972702 + 4 3.49e-08 TCT tgtgtgtgtgtg cgagggtgtg chr7:140639953-140640453 - 1 3.49e-08 CGCGCGCGCG TGTGTGTGTGTG chr15:34515070-34515570 + 86 3.49e-08 tgtgtgtgtg tgtgtgtgtgtg tgt chr22:19717643-19718143 - 29 3.49e-08 GTGTGTGTAA TGTGTGTGTGTG TAATGCCTGC chr19:12994870-12995370 + 59 8.90e-08 gtgtaggggt tgtgtgtctgtg ccttgtgtgc chr21:8420215-8420715 + 58 3.80e-07 tgtgtgtgtg tgtgtgtgtgtc tgccttctgt chr19:8610172-8610672 - 2 5.26e-07 GCATTACATG TGTGTGTCAGTG C chr19:41218486-41218986 + 49 5.26e-07 TCCTAGCCtg tgtgtgtcagtg acgtctaaga chr19:36772267-36772767 - 83 6.53e-07 CCGGAG TGGGTGTGTGTG TCCTGGACGA chr7:66920784-66921284 - 11 7.07e-07 GTGTGCGTAG TGCGTGTATGTG GCTTGTAGTG chr18:33579003-33579503 + 2 8.41e-07 T TGCGTGTCTGTG TGCCATGTCG chr6:166008665-166009165 + 37 8.41e-07 cgcgcgctca tgtgtgcatgtg cctgtgtgtg chr6:157221378-157221878 - 26 1.04e-06 AGTGTGCACG TGTGAGTGTGTG GTGAAGTGAG chr20:36092883-36093383 + 10 1.34e-06 GCGCGCGCG TGCGTGTGTGCG CCGGGTGTGC chr8:28401326-28401826 + 56 2.71e-06 tgcgcgtgta tttgtgcatgtg tgagcgcgcc chr22:50628412-50628912 + 4 2.96e-06 gtc tgtgtgcgtgta agctgtggct chr19:34677017-34677517 + 78 3.21e-06 GAGGGAAACG TTTGTGTGAGCG CAGGAATGAC chr19:36837913-36838413 - 24 4.70e-06 GCGACGGGAG CTTGTGTGTGTG TGTGTGTATG chr5:140564360-140564860 - 89 4.70e-06 . TGCGTGTGAGCG CACTCACGAC chr5:116573642-116574142 - 27 5.92e-06 TCCTCCTGGG GGTGTGTGTGCG AGACCCAAGG chr19:43901252-43901752 - 34 7.78e-06 TGAACAGTGT TGTGTACCTGTG TGAATTGTCA chr12:24562182-24562682 + 89 8.61e-06 tctgtgtgtg tgcgtgtgtgcc chr12:2004062-2004562 - 11 1.20e-05 GGCCAACGAG TGGGTGCGTGCG GACGCGGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52972202-52972702 3.5e-08 3_[+5]_85 chr7:140639953-140640453 3.5e-08 [-5]_88 chr15:34515070-34515570 3.5e-08 85_[+5]_3 chr22:19717643-19718143 3.5e-08 28_[-5]_60 chr19:12994870-12995370 8.9e-08 58_[+5]_30 chr21:8420215-8420715 3.8e-07 57_[+5]_31 chr19:8610172-8610672 5.3e-07 1_[-5]_87 chr19:41218486-41218986 5.3e-07 48_[+5]_40 chr19:36772267-36772767 6.5e-07 82_[-5]_6 chr7:66920784-66921284 7.1e-07 10_[-5]_78 chr18:33579003-33579503 8.4e-07 1_[+5]_87 chr6:166008665-166009165 8.4e-07 36_[+5]_52 chr6:157221378-157221878 1e-06 25_[-5]_63 chr20:36092883-36093383 1.3e-06 9_[+5]_79 chr8:28401326-28401826 2.7e-06 55_[+5]_33 chr22:50628412-50628912 3e-06 3_[+5]_85 chr19:34677017-34677517 3.2e-06 77_[+5]_11 chr19:36837913-36838413 4.7e-06 23_[-5]_65 chr5:140564360-140564860 4.7e-06 88_[-5] chr5:116573642-116574142 5.9e-06 26_[-5]_62 chr19:43901252-43901752 7.8e-06 33_[-5]_55 chr12:24562182-24562682 8.6e-06 88_[+5] chr12:2004062-2004562 1.2e-05 10_[-5]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGTGTG width=12 seqs=23 chr20:52972202-52972702 ( 4) TGTGTGTGTGTG 1 chr7:140639953-140640453 ( 1) TGTGTGTGTGTG 1 chr15:34515070-34515570 ( 86) TGTGTGTGTGTG 1 chr22:19717643-19718143 ( 29) TGTGTGTGTGTG 1 chr19:12994870-12995370 ( 59) TGTGTGTCTGTG 1 chr21:8420215-8420715 ( 58) TGTGTGTGTGTC 1 chr19:8610172-8610672 ( 2) TGTGTGTCAGTG 1 chr19:41218486-41218986 ( 49) TGTGTGTCAGTG 1 chr19:36772267-36772767 ( 83) TGGGTGTGTGTG 1 chr7:66920784-66921284 ( 11) TGCGTGTATGTG 1 chr18:33579003-33579503 ( 2) TGCGTGTCTGTG 1 chr6:166008665-166009165 ( 37) TGTGTGCATGTG 1 chr6:157221378-157221878 ( 26) TGTGAGTGTGTG 1 chr20:36092883-36093383 ( 10) TGCGTGTGTGCG 1 chr8:28401326-28401826 ( 56) TTTGTGCATGTG 1 chr22:50628412-50628912 ( 4) TGTGTGCGTGTA 1 chr19:34677017-34677517 ( 78) TTTGTGTGAGCG 1 chr19:36837913-36838413 ( 24) CTTGTGTGTGTG 1 chr5:140564360-140564860 ( 89) TGCGTGTGAGCG 1 chr5:116573642-116574142 ( 27) GGTGTGTGTGCG 1 chr19:43901252-43901752 ( 34) TGTGTACCTGTG 1 chr12:24562182-24562682 ( 89) TGCGTGTGTGCC 1 chr12:2004062-2004562 ( 11) TGGGTGCGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 12.7409 E= 6.0e-004 -1117 -289 -289 236 -1117 -1117 143 -44 -1117 -57 -189 197 -1117 -1117 163 -1117 -203 -1117 -1117 243 -203 -1117 157 -1117 -1117 -57 -1117 214 -44 -57 101 -1117 -3 -1117 -1117 222 -1117 -1117 163 -1117 -1117 -31 -1117 206 -203 -189 143 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 23 E= 6.0e-004 0.000000 0.043478 0.043478 0.913043 0.000000 0.000000 0.869565 0.130435 0.000000 0.217391 0.086957 0.695652 0.000000 0.000000 1.000000 0.000000 0.043478 0.000000 0.000000 0.956522 0.043478 0.000000 0.956522 0.000000 0.000000 0.217391 0.000000 0.782609 0.130435 0.217391 0.652174 0.000000 0.173913 0.000000 0.000000 0.826087 0.000000 0.000000 1.000000 0.000000 0.000000 0.260870 0.000000 0.739130 0.043478 0.086957 0.869565 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 regular expression -------------------------------------------------------------------------------- TG[TC]GTG[TC][GC]TG[TC]G -------------------------------------------------------------------------------- Time 3495.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCGACGK MEME-6 width = 9 sites = 45 llr = 446 E-value = 6.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCGACGK MEME-6 Description -------------------------------------------------------------------------------- Simplified A :::::a::: pos.-specific C aa8a::a:: probability G ::::a::a6 matrix T ::2:::::4 bits 2.5 * 2.2 * 2.0 * 1.7 * ***** Relative 1.5 ** ***** Entropy 1.2 ******** (14.3 bits) 1.0 ********* 0.7 ********* 0.5 ********* 0.2 ********* 0.0 --------- Multilevel CCCCGACGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGACGK MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr19:40403886-40404386 - 76 1.15e-05 AGTGGGTGTG CCCCGACGT CCTGCGAGGG chr16:1413664-1414164 - 33 1.15e-05 TCAACTACAG CCCCGACGT GTACTGCTCC chr19:58361809-58362309 + 11 1.15e-05 GCTCCAGCCT CCCCGACGT CCTCACGTCC chr19:8209559-8210059 + 58 1.15e-05 CGCCCCGTTT CCCCGACGT GCCAGGGCTG chr15:70100421-70100921 + 52 1.15e-05 GTCCCTCCTG CCCCGACGT CCACGCCCCC chr19:35748508-35749008 - 63 1.15e-05 CCCGACAGGC CCCCGACGT CAGGGTCCTC chr17:46267196-46267696 + 40 1.15e-05 CCTCACTCAC CCCCGACGT CTTCTTCTTC chr12:121400477-12140097 - 65 1.15e-05 TAGTTCGCGG CCCCGACGT GCAGCCTACG chr19:3761326-3761826 + 71 1.15e-05 CCACGGACGG CCCCGACGT AGCCCGGGCC chr11:43311752-43312252 - 15 1.15e-05 GCGGCTGCGC CCCCGACGT CTACGTAAAG chr17:14301734-14302234 + 64 1.15e-05 TGCGCGTGCA CCCCGACGT GCGCGCCGTG chr5:112419298-112419798 + 1 1.15e-05 . CCCCGACGT CCTGGCGTCC chr3:10992843-10993343 + 68 1.15e-05 GCCGCTCGGA CCCCGACGT GCGCCCAGGC chr7:12570698-12571198 - 10 1.15e-05 AGGTAGGCAT CCCCGACGT AGAAGTCGC chr22:20858950-20859450 + 53 3.25e-05 CCCGAGACCT CCCCGACGG GCCCGACGCG chr17:67993803-67994303 - 43 3.25e-05 CCTCGGCTTT CCCCGACGG CCTCCCCTCA chr20:2840211-2840711 + 15 3.25e-05 GTCGCTGTGG CCCCGACGG CGCCTCAGGC chr17:42422746-42423246 + 41 3.25e-05 CTGAGCCGGC CCCCGACGG CTCCTCCGCT chr5:95731628-95732128 - 89 3.25e-05 AAG CCCCGACGG CCGGTTGTCC chr1:150010342-150010842 + 9 3.25e-05 GGCCCCTC CCCCGACGG CGATGGAGGT chr7:101815137-101815637 - 52 3.25e-05 GTGGGAGGCG CCCCGACGG TGGACGGCAA chr4:152045639-152046139 - 56 3.25e-05 GTCCCTCTGG CCCCGACGG CTGCAGCGGC chr20:20363889-20364389 + 80 3.25e-05 CGTGCAGTGG CCCCGACGG TACTCTCGGG chr12:98645247-98645747 - 4 3.25e-05 GGCGCCCTTC CCCCGACGG CGG chr14:102139206-10213970 - 45 3.25e-05 AAGAGCGCCA CCCCGACGG CCACCGCTTC chr6:79631119-79631619 + 26 3.25e-05 cagcgatctt ccccgacgg cagcgcttta chr8:37700302-37700802 + 19 3.25e-05 CCCGCACTAG CCCCGACGG CACCTTGGTT chr11:73141617-73142117 + 84 3.25e-05 CATCAATCCT CCCCGACGG CAGCGTTA chr7:32957534-32958034 + 34 3.25e-05 TGGGGACGTT CCCCGACGG CCAGAAGTTC chr6:13013904-13014404 - 50 3.25e-05 GCCGCCGCCG CCCCGACGG GCCCCGGCAC chr2:71226561-71227061 + 66 3.25e-05 CCCTTCACAG CCCCGACGG CGGCAGAAAG chr16:74984532-74985032 + 76 3.25e-05 GTCTTCCCTC CCCCGACGG GGCCTAAGAG chr17:57085953-57086453 + 35 3.25e-05 CGCCCGGGGG CCCCGACGG TCACGTGTCC chr6:28923124-28923624 + 45 3.25e-05 CGCCGCCGGG CCCCGACGG CCGCTCGGTG chr17:3754999-3755499 + 35 3.25e-05 CAGTCAAAGG CCCCGACGG CGCCGAGCAG chr18:49561322-49561822 + 91 3.25e-05 GGTGGCTCTC CCCCGACGG A chr11:73308847-73309347 + 47 3.25e-05 GAACGCCCAG CCCCGACGG TGCCGCGTGG chr19:32675847-32676347 - 39 3.88e-05 CGCCCGGGAC CCTCGACGT GCGCCTCTGC chr17:36544382-36544882 - 36 3.88e-05 GGGGCAAGCC CCTCGACGT CAGGGTGTCG chr19:33177332-33177832 + 40 3.88e-05 GGGTGCCGAT CCTCGACGT TCGCCGGGCT chr1:151008466-151008966 + 83 5.02e-05 TCTGGGGGAG CCTCGACGG TCCGTGTGG chr2:26033999-26034499 + 72 5.02e-05 CGCTGCGCCT CCTCGACGG CAGAGCAGGC chr6:116371222-116371722 + 54 5.02e-05 GCCGCGATTT CCTCGACGG TCCTTGGGGC chr1:110407546-110408046 - 92 5.02e-05 . CCTCGACGG TCACCGCGCG chr17:35587329-35587829 - 39 6.80e-05 CAATGGTCAC ACCCGACGG TTCCCTGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGACGK MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40403886-40404386 1.1e-05 75_[-6]_16 chr16:1413664-1414164 1.1e-05 32_[-6]_59 chr19:58361809-58362309 1.1e-05 10_[+6]_81 chr19:8209559-8210059 1.1e-05 57_[+6]_34 chr15:70100421-70100921 1.1e-05 51_[+6]_40 chr19:35748508-35749008 1.1e-05 62_[-6]_29 chr17:46267196-46267696 1.1e-05 39_[+6]_52 chr12:121400477-12140097 1.1e-05 64_[-6]_27 chr19:3761326-3761826 1.1e-05 70_[+6]_21 chr11:43311752-43312252 1.1e-05 14_[-6]_77 chr17:14301734-14302234 1.1e-05 63_[+6]_28 chr5:112419298-112419798 1.1e-05 [+6]_91 chr3:10992843-10993343 1.1e-05 67_[+6]_24 chr7:12570698-12571198 1.1e-05 9_[-6]_82 chr22:20858950-20859450 3.2e-05 52_[+6]_39 chr17:67993803-67994303 3.2e-05 42_[-6]_49 chr20:2840211-2840711 3.2e-05 14_[+6]_77 chr17:42422746-42423246 3.2e-05 40_[+6]_51 chr5:95731628-95732128 3.2e-05 88_[-6]_3 chr1:150010342-150010842 3.2e-05 8_[+6]_83 chr7:101815137-101815637 3.2e-05 51_[-6]_40 chr4:152045639-152046139 3.2e-05 55_[-6]_36 chr20:20363889-20364389 3.2e-05 79_[+6]_12 chr12:98645247-98645747 3.2e-05 3_[-6]_88 chr14:102139206-10213970 3.2e-05 44_[-6]_47 chr6:79631119-79631619 3.2e-05 25_[+6]_66 chr8:37700302-37700802 3.2e-05 18_[+6]_73 chr11:73141617-73142117 3.2e-05 83_[+6]_8 chr7:32957534-32958034 3.2e-05 33_[+6]_58 chr6:13013904-13014404 3.2e-05 49_[-6]_42 chr2:71226561-71227061 3.2e-05 65_[+6]_26 chr16:74984532-74985032 3.2e-05 75_[+6]_16 chr17:57085953-57086453 3.2e-05 34_[+6]_57 chr6:28923124-28923624 3.2e-05 44_[+6]_47 chr17:3754999-3755499 3.2e-05 34_[+6]_57 chr18:49561322-49561822 3.2e-05 90_[+6]_1 chr11:73308847-73309347 3.2e-05 46_[+6]_45 chr19:32675847-32676347 3.9e-05 38_[-6]_53 chr17:36544382-36544882 3.9e-05 35_[-6]_56 chr19:33177332-33177832 3.9e-05 39_[+6]_52 chr1:151008466-151008966 5e-05 82_[+6]_9 chr2:26033999-26034499 5e-05 71_[+6]_20 chr6:116371222-116371722 5e-05 53_[+6]_38 chr1:110407546-110408046 5e-05 91_[-6] chr17:35587329-35587829 6.8e-05 38_[-6]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGACGK MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCGACGK width=9 seqs=45 chr19:40403886-40404386 ( 76) CCCCGACGT 1 chr16:1413664-1414164 ( 33) CCCCGACGT 1 chr19:58361809-58362309 ( 11) CCCCGACGT 1 chr19:8209559-8210059 ( 58) CCCCGACGT 1 chr15:70100421-70100921 ( 52) CCCCGACGT 1 chr19:35748508-35749008 ( 63) CCCCGACGT 1 chr17:46267196-46267696 ( 40) CCCCGACGT 1 chr12:121400477-12140097 ( 65) CCCCGACGT 1 chr19:3761326-3761826 ( 71) CCCCGACGT 1 chr11:43311752-43312252 ( 15) CCCCGACGT 1 chr17:14301734-14302234 ( 64) CCCCGACGT 1 chr5:112419298-112419798 ( 1) CCCCGACGT 1 chr3:10992843-10993343 ( 68) CCCCGACGT 1 chr7:12570698-12571198 ( 10) CCCCGACGT 1 chr22:20858950-20859450 ( 53) CCCCGACGG 1 chr17:67993803-67994303 ( 43) CCCCGACGG 1 chr20:2840211-2840711 ( 15) CCCCGACGG 1 chr17:42422746-42423246 ( 41) CCCCGACGG 1 chr5:95731628-95732128 ( 89) CCCCGACGG 1 chr1:150010342-150010842 ( 9) CCCCGACGG 1 chr7:101815137-101815637 ( 52) CCCCGACGG 1 chr4:152045639-152046139 ( 56) CCCCGACGG 1 chr20:20363889-20364389 ( 80) CCCCGACGG 1 chr12:98645247-98645747 ( 4) CCCCGACGG 1 chr14:102139206-10213970 ( 45) CCCCGACGG 1 chr6:79631119-79631619 ( 26) CCCCGACGG 1 chr8:37700302-37700802 ( 19) CCCCGACGG 1 chr11:73141617-73142117 ( 84) CCCCGACGG 1 chr7:32957534-32958034 ( 34) CCCCGACGG 1 chr6:13013904-13014404 ( 50) CCCCGACGG 1 chr2:71226561-71227061 ( 66) CCCCGACGG 1 chr16:74984532-74985032 ( 76) CCCCGACGG 1 chr17:57085953-57086453 ( 35) CCCCGACGG 1 chr6:28923124-28923624 ( 45) CCCCGACGG 1 chr17:3754999-3755499 ( 35) CCCCGACGG 1 chr18:49561322-49561822 ( 91) CCCCGACGG 1 chr11:73308847-73309347 ( 47) CCCCGACGG 1 chr19:32675847-32676347 ( 39) CCTCGACGT 1 chr17:36544382-36544882 ( 36) CCTCGACGT 1 chr19:33177332-33177832 ( 40) CCTCGACGT 1 chr1:151008466-151008966 ( 83) CCTCGACGG 1 chr2:26033999-26034499 ( 72) CCTCGACGG 1 chr6:116371222-116371722 ( 54) CCTCGACGG 1 chr1:110407546-110408046 ( 92) CCTCGACGG 1 chr17:35587329-35587829 ( 39) ACCCGACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGACGK MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 10.6388 E= 6.1e-003 -299 160 -1214 -1214 -1214 163 -1214 -1214 -1214 139 -1214 -19 -1214 163 -1214 -1214 -1214 -1214 163 -1214 250 -1214 -1214 -1214 -1214 163 -1214 -1214 -1214 -1214 163 -1214 -1214 -1214 95 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGACGK MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 45 E= 6.1e-003 0.022222 0.977778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.844444 0.000000 0.155556 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.622222 0.377778 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCGACGK MEME-6 regular expression -------------------------------------------------------------------------------- CCCCGACG[GT] -------------------------------------------------------------------------------- Time 4128.78 secs. ******************************************************************************** ******************************************************************************** MOTIF WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 width = 45 sites = 9 llr = 240 E-value = 2.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 Description -------------------------------------------------------------------------------- Simplified A 6::23:3::7::41:31172:a211::4113:166:8312113:3 pos.-specific C :868393871:8169:64:2a:786682:2:9642a::9:97:94 probability G ::1:::1:1:4:31:33316:::1:12263313:2:14:1:16:: matrix T 423:312222621213:12:::1:33:1333:::::12:7:1112 bits 2.5 * 2.2 * 2.0 * 1.7 ** * Relative 1.5 * ** ** Entropy 1.2 * * * * * ** * ** *** * (38.5 bits) 1.0 ** * * * *** * * ** * * ** *** * 0.7 ** * * * *** * * ***** * * * **** *** ** 0.5 ****** ***** *** ********* * *************** 0.2 ***************** *********** *************** 0.0 --------------------------------------------- Multilevel ACCCACACCATCACCACCAGCACCCCCAGGACCAACAGCTCCGCC consensus TTTAC CTTTGTGT GGGTA A TTGCTTG GCC A A A A sequence T T T C G CT G T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------------------------- chr12:63668692-63669192 + 4 1.13e-16 CAC ACTCTCCCCAGCGCCTGCAGCACCCCCAGTGCGCACAGCTCTGCC AGTCGCTTCC chr7:103280462-103280962 + 3 2.32e-16 AC ACTCTCCCCAGCGCCTGCAGCACCCGCAGTGCGCACAGCTCCGCC AGTAGCTTCC chr19:7691982-7692482 + 11 4.66e-16 CACATCAACT ACCAACACCATCACCACGAGCACATTCATGTCCAACAACAAATCA ACTACCAACA chr5:176591625-176592125 - 34 5.63e-14 TCACCTCAAC ACCAACACCATCATCACCACCATCACCATCACAACCATCACCATC ACCTCAACAC chr11:123430824-12343132 + 15 4.96e-12 CATCGAGATC ACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACA CCCAGCGCGT chr11:76444174-76444674 + 23 5.31e-12 ACGCTCGGAT TTCCCCTTCTTTACTTGCAACAACTCCGTAACCCGCAAATCGGCT ACGGACAACT chr12:49842731-49843231 - 12 5.68e-12 TTCGGAAATT TTCCTCATTATTCTCGCTTCCACCCTCCGGAGCAACGGCTCCGCC TCCTGCCCCC chr19:43639922-43640422 - 29 1.08e-11 CCTGCCACCC TCCCCTCCGCGCAGCGCAAGCACCCTGCATGCCAGCAACTCCGCA CCCTCGCGCG chr3:15860011-15860511 - 16 1.47e-11 AGGGGCACAT TCTCACGCTTTCTCCACGTGCAAGTCCGGCTCGCCCATCGCCACT CGCCGCAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:63668692-63669192 1.1e-16 3_[+7]_52 chr7:103280462-103280962 2.3e-16 2_[+7]_53 chr19:7691982-7692482 4.7e-16 10_[+7]_45 chr5:176591625-176592125 5.6e-14 33_[-7]_22 chr11:123430824-12343132 5e-12 14_[+7]_41 chr11:76444174-76444674 5.3e-12 22_[+7]_33 chr12:49842731-49843231 5.7e-12 11_[-7]_44 chr19:43639922-43640422 1.1e-11 28_[-7]_27 chr3:15860011-15860511 1.5e-11 15_[-7]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH width=45 seqs=9 chr12:63668692-63669192 ( 4) ACTCTCCCCAGCGCCTGCAGCACCCCCAGTGCGCACAGCTCTGCC 1 chr7:103280462-103280962 ( 3) ACTCTCCCCAGCGCCTGCAGCACCCGCAGTGCGCACAGCTCCGCC 1 chr19:7691982-7692482 ( 11) ACCAACACCATCACCACGAGCACATTCATGTCCAACAACAAATCA 1 chr5:176591625-176592125 ( 34) ACCAACACCATCATCACCACCATCACCATCACAACCATCACCATC 1 chr11:123430824-12343132 ( 15) ACGCCCTCCAGCGACGAGGACACCCCGTGGTCCAACTGCTCCACA 1 chr11:76444174-76444674 ( 23) TTCCCCTTCTTTACTTGCAACAACTCCGTAACCCGCAAATCGGCT 1 chr12:49842731-49843231 ( 12) TTCCTCATTATTCTCGCTTCCACCCTCCGGAGCAACGGCTCCGCC 1 chr19:43639922-43640422 ( 29) TCCCCTCCGCGCAGCGCAAGCACCCTGCATGCCAGCAACTCCGCA 1 chr3:15860011-15860511 ( 16) TCTCACGCTTTCTCCACGTGCAAGTCCGGCTCGCCCATCGCCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 45 n= 33600 bayes= 13.2705 E= 2.5e+002 165 -982 -982 133 -982 127 -982 33 -982 78 -154 91 33 127 -982 -982 91 5 -982 91 -982 146 -982 -67 91 5 -154 33 -982 127 -982 33 -982 105 -154 33 191 -154 -982 33 -982 -982 46 165 -982 127 -982 33 133 -154 5 -67 -67 78 -154 33 -982 146 -982 -67 91 -982 5 91 -67 78 5 -982 -67 46 5 -67 191 -982 -154 33 33 -54 78 -982 -982 163 -982 -982 250 -982 -982 -982 33 105 -982 -67 -67 127 -154 -982 -67 78 -982 91 -982 78 -154 91 -982 127 -54 -982 133 -54 -54 -67 -67 -982 78 91 -67 -54 5 91 91 -982 5 91 -982 146 -154 -982 -67 78 5 -982 165 46 -982 -982 165 -54 -54 -982 -982 163 -982 -982 213 -982 -154 -67 91 -982 46 33 -67 146 -982 -982 33 -982 -154 191 -67 146 -982 -982 -67 105 -154 -67 91 -982 78 -67 -982 146 -982 -67 91 46 -982 33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 45 nsites= 9 E= 2.5e+002 0.555556 0.000000 0.000000 0.444444 0.000000 0.777778 0.000000 0.222222 0.000000 0.555556 0.111111 0.333333 0.222222 0.777778 0.000000 0.000000 0.333333 0.333333 0.000000 0.333333 0.000000 0.888889 0.000000 0.111111 0.333333 0.333333 0.111111 0.222222 0.000000 0.777778 0.000000 0.222222 0.000000 0.666667 0.111111 0.222222 0.666667 0.111111 0.000000 0.222222 0.000000 0.000000 0.444444 0.555556 0.000000 0.777778 0.000000 0.222222 0.444444 0.111111 0.333333 0.111111 0.111111 0.555556 0.111111 0.222222 0.000000 0.888889 0.000000 0.111111 0.333333 0.000000 0.333333 0.333333 0.111111 0.555556 0.333333 0.000000 0.111111 0.444444 0.333333 0.111111 0.666667 0.000000 0.111111 0.222222 0.222222 0.222222 0.555556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.666667 0.000000 0.111111 0.111111 0.777778 0.111111 0.000000 0.111111 0.555556 0.000000 0.333333 0.000000 0.555556 0.111111 0.333333 0.000000 0.777778 0.222222 0.000000 0.444444 0.222222 0.222222 0.111111 0.111111 0.000000 0.555556 0.333333 0.111111 0.222222 0.333333 0.333333 0.333333 0.000000 0.333333 0.333333 0.000000 0.888889 0.111111 0.000000 0.111111 0.555556 0.333333 0.000000 0.555556 0.444444 0.000000 0.000000 0.555556 0.222222 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.000000 0.111111 0.111111 0.333333 0.000000 0.444444 0.222222 0.111111 0.888889 0.000000 0.000000 0.222222 0.000000 0.111111 0.666667 0.111111 0.888889 0.000000 0.000000 0.111111 0.666667 0.111111 0.111111 0.333333 0.000000 0.555556 0.111111 0.000000 0.888889 0.000000 0.111111 0.333333 0.444444 0.000000 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCYCHCHCCAKCRCCDSSAGCACCYYCVKBDCSMACADCTCCRCH MEME-7 regular expression -------------------------------------------------------------------------------- [AT][CT][CT][CA][ACT]C[ACT][CT][CT][AT][TG][CT][AG][CT]C[AGT][CG][CG][AT][GAC]CA[CA]C[CT][CT][CG][ACG][GT][GTC][AGT]C[CG][AC][ACG]CA[GAT]C[TA]CC[GA]C[CAT] -------------------------------------------------------------------------------- Time 4752.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 width = 43 sites = 13 llr = 290 E-value = 4.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 Description -------------------------------------------------------------------------------- Simplified A 12:25:126::1:5::::5:12:22:::131:37:2113:4:: pos.-specific C 15151221:16323258:::2:18:2::228:2:23:144:2: probability G 8481375748:68174292a879186a852285275983557a matrix T 1:22122::24::122112::2:::2:224:2:121:::121: bits 2.5 2.2 2.0 1.7 * * * Relative 1.5 * * * Entropy 1.2 * * * * * ** * * * (32.2 bits) 1.0 * * * * * * ** * * ** * 0.7 * **** * ********* ** ** * ** * * 0.5 * * ** ******** ************ ** ** ** **** 0.2 ****** ********************* ****** ******* 0.0 ------------------------------------------- Multilevel GCGCAGGGAGCGGAGCCGAGGGGCGGGGGTCGGAGGGGCGGGG consensus G TG CAG TCCC G G T CA TAG C ACAC sequence T T T C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr19:17419985-17420485 + 36 1.01e-16 CGGGGGTTCA GCGCGGTGAGCGGCGTCGAGGGGCGGGGGTCGAATGGGGGAGG CAGTCGCTGT chr16:55509109-55509609 + 29 1.12e-13 GATCGGCTCC GCGAGGCGGGTCCAGGTGAGGGGCGTGGGTCTGAGGGGAGAGG TGGTCTGAGG chr12:57726178-57726678 + 46 4.07e-13 GCCCTCGTGG GGGTAGGAAGTGCTCCCGTGGGGCGGGGTGCGGATCGGAGAGG TGAGTGGGTG chr19:58573017-58573517 - 31 8.07e-12 GCGCATGCCG ACGCACGGATTCGAGGCGGGGAGCATGGGAAGAAGCGGCCAGG AGTATGACCT chr2:229921912-229922412 - 37 1.28e-11 ATCGGAGGCT GCTGAGAGAGTCGAGCCGGGAGGCGTGGGAGGGAGGGGCGATG TGATGGGCCG chr16:29862772-29863272 + 50 1.28e-11 CAGCCGTCGG GAGCATGGACCGGCCCCGAGGTGCGCGGGACGCAGGGGGCGCG CGCAGTCC chr16:56191339-56191839 - 56 1.83e-11 TT GGGCAGGGGGCCGGGCCGAGGGGCAGGTCTCTAGCGGGAGGCG GCGTCGCTGT chr17:77528686-77529186 + 20 2.60e-11 AGGCAATGCG GGGTGTGAAGTGGCGGCGGGCAGAGGGGCTCGCAGGGGCTGGG ATCCGCGTGC chr12:64404505-64405005 - 14 1.23e-10 CACTCCAGAT GGTCAGCCAGCGGAGCGGAGCGGCGCGGCACGCAGAGAGCTGG GAGAGCGGCC chr16:401804-402304 + 53 7.77e-10 AGCGGGGCCT GGGAAGCGAGCGCAGCCTTGGTGCGGGGTCCGGTCCGCGGGCG CCGGC chr17:45247860-45248360 + 28 8.85e-10 TCAGAACGGG TCCTGGGGGTCGGAGGCGAGGGCGGGGGTTGTAAGTGGCCGGG AGAGGTCCCT chr19:36054826-36055326 - 35 9.44e-10 GTCGCGTCCG CCGCCGTAGGCAGATTGGTGGGGCGGGGGGCGGGGAGGACTGG CCCCTCCGCG chr16:89490896-89491396 + 11 1.07e-09 GGGGCATGAA GAGCTCTGGGCGGCTGCGAGGGGAGGGTACCGGGGCAGCGGGG CGGTCGCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:17419985-17420485 1e-16 35_[+8]_22 chr16:55509109-55509609 1.1e-13 28_[+8]_29 chr12:57726178-57726678 4.1e-13 45_[+8]_12 chr19:58573017-58573517 8.1e-12 30_[-8]_27 chr2:229921912-229922412 1.3e-11 36_[-8]_21 chr16:29862772-29863272 1.3e-11 49_[+8]_8 chr16:56191339-56191839 1.8e-11 55_[-8]_2 chr17:77528686-77529186 2.6e-11 19_[+8]_38 chr12:64404505-64405005 1.2e-10 13_[-8]_44 chr16:401804-402304 7.8e-10 52_[+8]_5 chr17:45247860-45248360 8.9e-10 27_[+8]_30 chr19:36054826-36055326 9.4e-10 34_[-8]_23 chr16:89490896-89491396 1.1e-09 10_[+8]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG width=43 seqs=13 chr19:17419985-17420485 ( 36) GCGCGGTGAGCGGCGTCGAGGGGCGGGGGTCGAATGGGGGAGG 1 chr16:55509109-55509609 ( 29) GCGAGGCGGGTCCAGGTGAGGGGCGTGGGTCTGAGGGGAGAGG 1 chr12:57726178-57726678 ( 46) GGGTAGGAAGTGCTCCCGTGGGGCGGGGTGCGGATCGGAGAGG 1 chr19:58573017-58573517 ( 31) ACGCACGGATTCGAGGCGGGGAGCATGGGAAGAAGCGGCCAGG 1 chr2:229921912-229922412 ( 37) GCTGAGAGAGTCGAGCCGGGAGGCGTGGGAGGGAGGGGCGATG 1 chr16:29862772-29863272 ( 50) GAGCATGGACCGGCCCCGAGGTGCGCGGGACGCAGGGGGCGCG 1 chr16:56191339-56191839 ( 56) GGGCAGGGGGCCGGGCCGAGGGGCAGGTCTCTAGCGGGAGGCG 1 chr17:77528686-77529186 ( 20) GGGTGTGAAGTGGCGGCGGGCAGAGGGGCTCGCAGGGGCTGGG 1 chr12:64404505-64405005 ( 14) GGTCAGCCAGCGGAGCGGAGCGGCGCGGCACGCAGAGAGCTGG 1 chr16:401804-402304 ( 53) GGGAAGCGAGCGCAGCCTTGGTGCGGGGTCCGGTCCGCGGGCG 1 chr17:45247860-45248360 ( 28) TCCTGGGGGTCGGAGGCGAGGGCGGGGGTTGTAAGTGGCCGGG 1 chr19:36054826-36055326 ( 35) CCGCCGTAGGCAGATTGGTGGGGCGGGGGGCGGGGAGGACTGG 1 chr16:89490896-89491396 ( 11) GAGCTCTGGGCGGCTGCGAGGGGAGGGTACCGGGGCAGCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34800 bayes= 11.9165 E= 4.1e-001 -120 -207 125 -120 -20 52 25 -1035 -1035 -207 125 -20 -20 74 -207 38 160 -207 -7 -120 -1035 -107 110 -20 -120 -48 52 38 38 -207 110 -1035 180 -1035 25 -1035 -1035 -207 125 -20 -1035 93 -1035 112 -120 -7 93 -1035 -1035 -48 125 -1035 160 -7 -207 -120 -1035 -107 110 -20 -1035 52 25 -20 -1035 125 -107 -120 -1035 -1035 152 -120 160 -1035 -48 38 -1035 -1035 163 -1035 -120 -107 125 -1035 -20 -1035 110 -20 -1035 -207 152 -1035 -20 125 -207 -1035 -20 -1035 139 -1035 -1035 -107 93 38 -1035 -1035 163 -1035 -1035 -1035 139 -20 -120 -48 52 38 80 -107 -107 112 -120 125 -107 -1035 -1035 -1035 125 38 80 -48 52 -1035 197 -1035 -48 -120 -1035 -107 110 -20 -20 -7 52 -120 -120 -1035 152 -1035 -120 -207 139 -1035 80 25 -7 -1035 -1035 25 74 -120 112 -1035 52 -20 -1035 -48 110 -120 -1035 -1035 163 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 13 E= 4.1e-001 0.076923 0.076923 0.769231 0.076923 0.153846 0.461538 0.384615 0.000000 0.000000 0.076923 0.769231 0.153846 0.153846 0.538462 0.076923 0.230769 0.538462 0.076923 0.307692 0.076923 0.000000 0.153846 0.692308 0.153846 0.076923 0.230769 0.461538 0.230769 0.230769 0.076923 0.692308 0.000000 0.615385 0.000000 0.384615 0.000000 0.000000 0.076923 0.769231 0.153846 0.000000 0.615385 0.000000 0.384615 0.076923 0.307692 0.615385 0.000000 0.000000 0.230769 0.769231 0.000000 0.538462 0.307692 0.076923 0.076923 0.000000 0.153846 0.692308 0.153846 0.000000 0.461538 0.384615 0.153846 0.000000 0.769231 0.153846 0.076923 0.000000 0.000000 0.923077 0.076923 0.538462 0.000000 0.230769 0.230769 0.000000 0.000000 1.000000 0.000000 0.076923 0.153846 0.769231 0.000000 0.153846 0.000000 0.692308 0.153846 0.000000 0.076923 0.923077 0.000000 0.153846 0.769231 0.076923 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.153846 0.615385 0.230769 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.846154 0.153846 0.076923 0.230769 0.461538 0.230769 0.307692 0.153846 0.153846 0.384615 0.076923 0.769231 0.153846 0.000000 0.000000 0.000000 0.769231 0.230769 0.307692 0.230769 0.461538 0.000000 0.692308 0.000000 0.230769 0.076923 0.000000 0.153846 0.692308 0.153846 0.153846 0.307692 0.461538 0.076923 0.076923 0.000000 0.923077 0.000000 0.076923 0.076923 0.846154 0.000000 0.307692 0.384615 0.307692 0.000000 0.000000 0.384615 0.538462 0.076923 0.384615 0.000000 0.461538 0.153846 0.000000 0.230769 0.692308 0.076923 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGBGRGYSGMGSCGAGGGGCGGGGBWCGVAGSGGVSRGG MEME-8 regular expression -------------------------------------------------------------------------------- G[CG]G[CT][AG]G[GCT][GA][AG]G[CT][GC][GC][AC]G[CG]CG[AGT]GGGGCG[GT]GG[GCT][TA]C[GT][GAC][AG]G[GC]GG[CAG][GC][GA][GC]G -------------------------------------------------------------------------------- Time 5364.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTGKGTACTTTGAT MEME-9 width = 16 sites = 4 llr = 87 E-value = 6.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTGKGTACTTTGAT MEME-9 Description -------------------------------------------------------------------------------- Simplified A 3:::::::a:::::a: pos.-specific C ::::::3::a:::::: probability G :::3a58::::::a:3 matrix T 8aa8:5:a::aaa::8 bits 2.5 ** ** *** * 2.2 ** ** *** * 2.0 ** ** *** * 1.7 *** * ******** Relative 1.5 ***** ********* Entropy 1.2 ***** ********* (31.4 bits) 1.0 ****** ********* 0.7 **************** 0.5 **************** 0.2 **************** 0.0 ---------------- Multilevel TTTTGGGTACTTTGAT consensus A G TC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGKGTACTTTGAT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chrUn_KI270466v1:187-687 + 48 1.03e-11 ataatacata ttttgtgtactttgat attttatgta chrUn_KI270467v1:2896-33 + 33 1.06e-10 ataatacata atttgggtactttgat attttatgta chrUn_KI270467v1:3101-36 + 37 1.25e-10 acaatatata ttttggctactttgat attttatgta chrUn_KI270467v1:1995-24 + 17 4.00e-10 ataatatata tttggtgtactttgag attttatgta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGKGTACTTTGAT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270466v1:187-687 1e-11 47_[+9]_37 chrUn_KI270467v1:2896-33 1.1e-10 32_[+9]_52 chrUn_KI270467v1:3101-36 1.2e-10 36_[+9]_48 chrUn_KI270467v1:1995-24 4e-10 16_[+9]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGKGTACTTTGAT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTGKGTACTTTGAT width=16 seqs=4 chrUn_KI270466v1:187-687 ( 48) TTTTGTGTACTTTGAT 1 chrUn_KI270467v1:2896-33 ( 33) ATTTGGGTACTTTGAT 1 chrUn_KI270467v1:3101-36 ( 37) TTTTGGCTACTTTGAT 1 chrUn_KI270467v1:1995-24 ( 17) TTTGGTGTACTTTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGKGTACTTTGAT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.79 E= 6.1e+002 50 -865 -865 208 -865 -865 -865 249 -865 -865 -865 249 -865 -865 -37 208 -865 -865 163 -865 -865 -865 63 149 -865 -37 121 -865 -865 -865 -865 249 249 -865 -865 -865 -865 163 -865 -865 -865 -865 -865 249 -865 -865 -865 249 -865 -865 -865 249 -865 -865 163 -865 249 -865 -865 -865 -865 -865 -37 208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGKGTACTTTGAT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 4 E= 6.1e+002 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGKGTACTTTGAT MEME-9 regular expression -------------------------------------------------------------------------------- [TA]TT[TG]G[GT][GC]TACTTTGA[TG] -------------------------------------------------------------------------------- Time 5942.74 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 width = 41 sites = 9 llr = 221 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 Description -------------------------------------------------------------------------------- Simplified A 7::a1:8::22:43:421144:638122::7::96:61:1: pos.-specific C ::2::21:12141:22::63:11113618313:11:::4:1 probability G 1a8:77:996163673823:6733:4:327169:3a48489 matrix T 2:::2111::6:111::7:2:2:21123::111::::111: bits 2.5 * 2.2 * 2.0 * * 1.7 * * * * Relative 1.5 * * * * * * Entropy 1.2 ** * *** * ** * * (35.5 bits) 1.0 ** * *** ** * * ** ** * 0.7 ***** *** ** * ** ** * * *** ****** ** 0.5 ************ ********** * * ********** ** 0.2 ************************* *************** 0.0 ----------------------------------------- Multilevel AGGAGGAGGGTGAGGAGTCAGGAAAGCGCGAGGAAGAGCGG consensus T C TC AACGACGAGGCATGG CATGC C G G G sequence C C T T TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------- chr17:59565477-59565977 + 38 3.60e-19 CCAAGGCGGC AGGAGGAGGGTGAGCGGTCAAGAGACCTCCAGGAAGAGCGG CTCTCGGCTG chr17:50200879-50201379 - 21 1.09e-12 CGGGGAAGTG GGGATCTGGGTGCAGAGTGAGGAAAGCACGTCGAAGATGGG ATGGGGGCGC chr3:58306137-58306637 + 40 1.57e-12 TGCGGCGAAT AGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGG GTAGGTGGAA chr2:113583623-113584123 + 6 2.05e-12 GGTCT AGGAAGAGGGTCTGCAGAGCAGAAAGCACGGGTAGGGGCGG CCTGACGCTC chr12:66302483-66302983 + 18 3.74e-12 AACGACGACG TGGAGGAGGATGAAGAGTCCGTGTTCATCGACGCCGAGGAG CTCTGCAGTG chr2:24360518-24361018 - 40 9.17e-12 TACCTCGGGG AGGAGGAGCCAGGTGGGTCTGTGCAACTCCAGGAAGGGCTG CCAGGTCTGG chr22:21657069-21657569 + 20 2.29e-11 GGGCGTTGCC TGGATGAGGCCCGGGAGGCTACAGACAGCGAGGAGGGGCGC CCGTCGGAGG chr12:65121096-65121596 + 60 3.53e-11 AGCCTGCGAg agcaggaggagggggcaggcaggacgcgggaggaggagggg chr3:27369000-27369500 - 42 8.04e-11 AGCAGGTGAC AGCAGCAGGGACAATGATAAGGAGATTGGCCTGAAGGAGGG ACCGTCCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:59565477-59565977 3.6e-19 37_[+10]_22 chr17:50200879-50201379 1.1e-12 20_[-10]_39 chr3:58306137-58306637 1.6e-12 39_[+10]_20 chr2:113583623-113584123 2e-12 5_[+10]_54 chr12:66302483-66302983 3.7e-12 17_[+10]_42 chr2:24360518-24361018 9.2e-12 39_[-10]_20 chr22:21657069-21657569 2.3e-11 19_[+10]_40 chr12:65121096-65121596 3.5e-11 59_[+10] chr3:27369000-27369500 8e-11 41_[-10]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG width=41 seqs=9 chr17:59565477-59565977 ( 38) AGGAGGAGGGTGAGCGGTCAAGAGACCTCCAGGAAGAGCGG 1 chr17:50200879-50201379 ( 21) GGGATCTGGGTGCAGAGTGAGGAAAGCACGTCGAAGATGGG 1 chr3:58306137-58306637 ( 40) AGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGG 1 chr2:113583623-113584123 ( 6) AGGAAGAGGGTCTGCAGAGCAGAAAGCACGGGTAGGGGCGG 1 chr12:66302483-66302983 ( 18) TGGAGGAGGATGAAGAGTCCGTGTTCATCGACGCCGAGGAG 1 chr2:24360518-24361018 ( 40) AGGAGGAGCCAGGTGGGTCTGTGCAACTCCAGGAAGGGCTG 1 chr22:21657069-21657569 ( 20) TGGATGAGGCCCGGGAGGCTACAGACAGCGAGGAGGGGCGC 1 chr12:65121096-65121596 ( 60) AGCAGGAGGAGGGGGCAGGCAGGACGCGGGAGGAGGAGGGG 1 chr3:27369000-27369500 ( 42) AGCAGCAGGGACAATGATAAGGAGATTGGCCTGAAGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 36000 bayes= 12.0998 E= 2.3e+004 191 -982 -154 33 -982 -982 163 -982 -982 -54 127 -982 250 -982 -982 -982 -67 -982 105 33 -982 -54 105 -67 213 -154 -982 -67 -982 -982 146 -67 -982 -154 146 -982 33 -54 78 -982 33 -154 -154 165 -982 46 78 -982 133 -154 5 -67 91 -982 78 -67 -982 -54 105 -67 133 -54 5 -982 33 -982 127 -982 -67 -982 -54 191 -67 78 5 -982 133 5 -982 33 133 -982 78 -982 -982 -154 105 33 165 -154 5 -982 91 -154 5 33 213 -154 -982 -67 -67 5 46 -67 33 78 -982 33 33 -154 5 91 -982 127 -54 -982 -982 5 105 -982 191 -154 -154 -67 -982 5 78 -67 -982 -982 146 -67 233 -154 -982 -982 165 -154 5 -982 -982 -982 163 -982 165 -982 46 -982 -67 -982 127 -67 -982 46 46 -67 -67 -982 127 -67 -982 -154 146 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 9 E= 2.3e+004 0.666667 0.000000 0.111111 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.777778 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.666667 0.222222 0.000000 0.222222 0.666667 0.111111 0.777778 0.111111 0.000000 0.111111 0.000000 0.000000 0.888889 0.111111 0.000000 0.111111 0.888889 0.000000 0.222222 0.222222 0.555556 0.000000 0.222222 0.111111 0.111111 0.555556 0.000000 0.444444 0.555556 0.000000 0.444444 0.111111 0.333333 0.111111 0.333333 0.000000 0.555556 0.111111 0.000000 0.222222 0.666667 0.111111 0.444444 0.222222 0.333333 0.000000 0.222222 0.000000 0.777778 0.000000 0.111111 0.000000 0.222222 0.666667 0.111111 0.555556 0.333333 0.000000 0.444444 0.333333 0.000000 0.222222 0.444444 0.000000 0.555556 0.000000 0.000000 0.111111 0.666667 0.222222 0.555556 0.111111 0.333333 0.000000 0.333333 0.111111 0.333333 0.222222 0.777778 0.111111 0.000000 0.111111 0.111111 0.333333 0.444444 0.111111 0.222222 0.555556 0.000000 0.222222 0.222222 0.111111 0.333333 0.333333 0.000000 0.777778 0.222222 0.000000 0.000000 0.333333 0.666667 0.000000 0.666667 0.111111 0.111111 0.111111 0.000000 0.333333 0.555556 0.111111 0.000000 0.000000 0.888889 0.111111 0.888889 0.111111 0.000000 0.000000 0.555556 0.111111 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.555556 0.000000 0.444444 0.000000 0.111111 0.000000 0.777778 0.111111 0.000000 0.444444 0.444444 0.111111 0.111111 0.000000 0.777778 0.111111 0.000000 0.111111 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAGGAGGGTSRRGVGTSHRGRDASCDCSASGARGRGSGG MEME-10 regular expression -------------------------------------------------------------------------------- [AT]G[GC]A[GT][GC]AGG[GAC][TA][GC][AG][GA][GC][AGC][GA][TG][CG][ACT][GA][GT][AG][AGT]A[GC][CAT][GTA][CG][GC]A[GC]GA[AG]G[AG]G[CG]GG -------------------------------------------------------------------------------- Time 6501.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18224060-18224560 1.73e-01 100 chr6:157274261-157274761 8.49e-02 100 chr7:12570698-12571198 3.00e-02 9_[-6(1.15e-05)]_82 chr7:65981920-65982420 4.46e-01 100 chr5:134738416-134738916 8.02e-01 100 chr17:38869348-38869848 3.27e-01 100 chr19:43619582-43620082 1.73e-03 46_[+1(1.01e-06)]_32 chr20:63657997-63658497 4.29e-01 100 chr12:53006524-53007024 1.04e-02 43_[-4(3.87e-05)]_41 chr6:33299559-33300059 6.58e-01 100 chr18:49813402-49813902 5.55e-01 100 chr3:10992843-10993343 5.74e-03 40_[-4(8.05e-05)]_11_[+6(1.15e-05)]_\ 24 chr6:69867410-69867910 1.01e-01 100 chr17:45894573-45895073 3.27e-01 100 chr8:38787408-38787908 1.26e-01 100 chr7:73522236-73522736 1.08e-01 100 chr11:64449066-64449566 7.34e-01 100 chr5:80960627-80961127 3.31e-03 47_[+7(3.41e-05)]_8 chr7:66920784-66921284 1.38e-10 10_[-5(7.07e-07)]_3_[-1(5.06e-10)]_\ 2_[-1(5.27e-05)]_29 chr12:110468783-11046928 2.78e-01 100 chr19:32746642-32747142 3.29e-26 1_[-4(3.24e-05)]_15_[+5(3.49e-08)]_\ 4_[+2(5.97e-13)]_23 chr5:113487877-113488377 5.85e-01 100 chr11:73308847-73309347 3.51e-01 46_[+6(3.25e-05)]_45 chr19:35986947-35987447 1.92e-06 3_[-2(6.53e-08)]_68 chr19:13149939-13150439 5.45e-02 [-9(2.60e-05)]_29_[-8(4.82e-05)]_12 chr16:15055405-15055905 5.04e-01 100 chr11:125887676-12588817 2.85e-01 100 chr5:132490378-132490878 3.32e-05 52_[+2(6.40e-07)]_19 chr2:112055666-112056166 7.49e-01 100 chr18:59696665-59697165 1.76e-01 100 chr20:46013885-46014385 1.71e-01 100 chr8:11201499-11201999 9.65e-01 100 chr1:168137106-168137606 3.07e-03 24_[+4(8.73e-06)]_60 chr2:153871302-153871802 8.35e-01 100 chr12:68686216-68686716 1.40e-01 50_[-2(1.20e-05)]_21 chr5:177403265-177403765 1.31e-01 100 chr14_GL000225v1_random: 7.72e-01 100 chr16:54284918-54285418 3.60e-05 38_[+4(7.76e-06)]_46 chr16:52547301-52547801 6.64e-04 48_[-2(1.84e-05)]_1_[+5(3.55e-05)]_\ 10 chr15:89893960-89894460 7.49e-01 100 chr7:76281021-76281521 1.97e-14 25_[-2(9.57e-15)]_2_[-2(2.38e-12)]_\ 15 chr6:157221378-157221878 3.09e-14 25_[-5(1.04e-06)]_[-3(7.95e-08)]_8_\ [-1(3.75e-11)]_11 chr5:139518087-139518587 4.28e-01 100 chr3:160756446-160756946 8.62e-06 52_[-4(7.47e-05)]_10_[+1(1.22e-07)] chr2:37325009-37325509 7.92e-02 100 chr6:83853374-83853874 1.15e-04 4_[-2(1.23e-07)]_67 chr19:29605829-29606329 1.84e-02 100 chr4:102827389-102827889 9.16e-01 100 chr19:41940432-41940932 1.11e-04 43_[+2(8.40e-07)]_28 chr4:77075873-77076373 4.13e-06 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chr1:151790100-151790600 2.98e-03 16_[+4(4.60e-05)]_24_[+4(4.26e-06)]_\ 28 chr19:35643349-35643849 8.31e-01 100 chr6:109455269-109455769 8.45e-03 26_[+10(1.61e-05)]_33 chr16:31032890-31033390 7.61e-01 100 chr7:112790001-112790501 1.01e-02 16_[+2(8.35e-06)]_55 chr1:224929318-224929818 1.18e-01 100 chr1:111990060-111990560 2.18e-02 85_[+5(6.65e-05)]_3 chr19:12994870-12995370 3.07e-08 31_[+1(1.40e-09)]_5_[+5(8.90e-08)]_\ 30 chr7:140639953-140640453 1.87e-09 [-5(3.49e-08)]_6_[-1(1.33e-08)]_60 chr1:95072620-95073120 4.77e-01 100 chr19:33373105-33373605 7.66e-01 100 chr7:76318147-76318647 5.78e-01 100 chr20:46307171-46307671 1.07e-01 [-8(1.53e-05)]_57 chr19:8209559-8210059 4.38e-01 57_[+6(1.15e-05)]_34 chr16:23452716-23453216 2.42e-01 100 chr19:984229-984729 8.15e-01 100 chr2:176188134-176188634 7.47e-04 61_[-2(4.52e-06)]_10 chr1:93847109-93847609 9.66e-01 100 chr18:33577740-33578240 4.30e-02 100 chr19:35248854-35249354 4.29e-01 100 chr8:28401326-28401826 1.83e-08 1_[+3(2.37e-08)]_4_[+1(4.31e-09)]_2_\ [+3(3.29e-07)]_27 chr10:75111508-75112008 6.53e-02 16_[+8(5.16e-05)]_41 chr18:267641-268141 1.02e-02 23_[+4(7.47e-05)]_10_[+9(2.72e-05)]_\ 35 chr15:89334830-89335330 6.90e-01 100 chr1:94418417-94418917 2.59e-01 100 chr6:158869949-158870449 7.12e-02 80_[-4(3.55e-05)]_4 chr5:55226875-55227375 2.15e-01 45_[-10(2.55e-05)]_14 chr6:132401553-132402053 1.65e-05 8_[+2(1.84e-07)]_11_[+2(1.10e-06)]_\ 23 chr19:33778289-33778789 4.86e-06 71_[-1(6.00e-09)]_7 chr19:14137148-14137648 8.41e-01 100 chr16:30021265-30021765 1.80e-03 18_[-4(4.26e-06)]_66 chr17:75516048-75516548 1.90e-01 100 chr20:52972202-52972702 1.67e-21 3_[+5(3.49e-08)]_8_[+3(1.81e-14)]_9_\ [+1(8.29e-09)]_10_[+5(7.76e-05)]_2 chr10:92690033-92690533 4.38e-03 80_[-5(7.44e-05)]_8 chr20:58650983-58651483 1.16e-02 15_[-4(3.74e-06)]_69 chr19:36797489-36797989 2.72e-01 100 chr13:46211796-46212296 5.01e-03 16_[+10(4.65e-05)]_20_\ [-4(4.26e-06)]_7 chr17:60525773-60526273 5.30e-02 100 chr19:1261056-1261556 8.37e-02 100 chr19:40190956-40191456 9.86e-01 100 chr6:159169708-159170208 3.53e-03 68_[+2(3.56e-06)]_3 chr12:6533958-6534458 6.74e-02 29_[+4(1.35e-05)]_55 chr5:95731628-95732128 4.83e-04 88_[-6(3.25e-05)]_3 chr22:28741990-28742490 7.29e-01 100 chr17:42422746-42423246 1.60e-02 40_[+6(3.25e-05)]_51 chr19:36837913-36838413 1.23e-23 1_[-1(3.30e-14)]_[-5(4.70e-06)]_16_\ [-2(6.29e-05)]_20 chr3:194672261-194672761 7.03e-01 100 chr11:123654109-12365460 7.58e-01 100 chrX:21839287-21839787 1.06e-01 100 chr17:74736837-74737337 3.56e-02 100 chr19:15555934-15556434 2.58e-02 100 chr9:133459847-133460347 7.89e-01 100 chr12:27710749-27711249 3.61e-04 100 chr1:83998943-83999443 1.43e-01 52_[+8(4.93e-05)]_5 chr19:58361809-58362309 2.00e-02 10_[+6(1.15e-05)]_81 chr5:139765579-139766079 6.99e-02 100 chr17:38751701-38752201 8.79e-03 56_[-4(8.73e-06)]_9_[-4(3.87e-05)]_\ 3 chr19:38224255-38224755 1.36e-08 26_[-5(6.04e-05)]_18_[-3(3.99e-08)]_\ [-1(1.16e-05)] chr20:2840211-2840711 2.55e-02 14_[+6(3.25e-05)]_35_[-2(3.58e-05)]_\ 13 chr10:93702411-93702911 2.01e-01 61_[+2(5.92e-05)]_10 chr21:8420215-8420715 1.31e-28 13_[+3(2.23e-09)]_[+1(3.30e-14)]_\ [+5(3.80e-07)]_1_[-2(1.22e-09)]_1 chr16:1413664-1414164 4.07e-04 10_[+9(7.23e-06)]_6_[-6(1.15e-05)]_\ 59 chr19:58573017-58573517 4.12e-06 30_[-8(8.07e-12)]_27 chr17:26603650-26604150 2.65e-01 75_[+3(1.39e-05)]_3 chr16:56191339-56191839 3.27e-05 55_[-8(1.83e-11)]_2 chr1:157992994-157993494 1.19e-07 22_[+1(1.30e-07)]_56 chr7:100896008-100896508 1.13e-02 1_[-1(2.66e-05)]_1_[-1(7.47e-06)]_\ 54 chr17:67993803-67994303 1.39e-06 1_[+2(2.41e-05)]_12_[-6(3.25e-05)]_\ 16_[+2(1.50e-07)]_4 chr19:43639922-43640422 4.22e-07 28_[-7(1.08e-11)]_27 chr18:70205603-70206103 9.38e-01 100 chr19:37779000-37779500 2.98e-05 1_[-5(3.73e-05)]_43_[-2(7.75e-06)]_\ 15 chr5:108727899-108728399 8.42e-01 100 chr16:1308987-1309487 5.13e-01 100 chr1:32292127-32292627 1.36e-03 26_[+10(2.80e-05)]_33 chr4:139453395-139453895 7.78e-01 100 chr11:18394401-18394901 2.69e-01 100 chr19:40528911-40529411 6.90e-01 100 chr1:30718676-30719176 8.07e-01 100 chr9:105244112-105244612 7.67e-01 100 chr22:29314814-29315314 7.84e-01 100 chr16:75433112-75433612 4.51e-01 100 chr5:139341719-139342219 9.45e-01 100 chr19:39320105-39320605 1.03e-19 1_[-1(3.30e-14)]_2_[-1(6.10e-10)]_\ 53 chr3:111859266-111859766 4.67e-01 23_[+6(6.80e-05)]_68 chr19:40403886-40404386 3.26e-01 75_[-6(1.15e-05)]_16 chr19:39507219-39507719 7.05e-01 100 chr22:36386837-36387337 2.17e-01 100 chr1:93179876-93180376 7.13e-02 100 chr19:43503609-43504109 6.85e-05 5_[-2(2.03e-07)]_66 chrUn_KI270466v1:187-687 1.69e-10 5_[+9(2.72e-09)]_4_[-3(9.60e-08)]_\ [+9(1.03e-11)]_4_[-3(3.29e-07)]_11 chr8:120444998-120445498 1.47e-04 23_[+4(2.18e-06)]_61 chr12:389156-389656 7.97e-06 30_[+4(1.40e-06)]_54 chr22:20858950-20859450 1.17e-01 52_[+6(3.25e-05)]_39 chr19:35154679-35155179 2.61e-02 48_[+4(5.44e-05)]_36 chr19:32675847-32676347 1.67e-01 38_[-6(3.88e-05)]_53 chr19:43462908-43463408 8.21e-01 100 chr19:40090512-40091012 3.53e-05 18_[-1(1.01e-06)]_60 chr16:3157539-3158039 8.82e-02 100 chr19:43984094-43984594 7.15e-02 100 chr19:42387082-42387582 5.64e-01 100 chr19:46638760-46639260 1.03e-06 16_[+2(3.01e-07)]_12_[-4(8.90e-08)]_\ 27 chr12:12266913-12267413 4.60e-02 100 chrUn_KI270467v1:1995-24 4.35e-08 16_[+9(4.00e-10)]_4_[-3(5.39e-08)]_\ [+9(1.49e-05)]_4_[-3(8.74e-08)] chr1:125179940-125180440 3.57e-02 37_[-2(3.56e-06)]_34 chrUn_KI270467v1:3101-36 6.67e-10 14_[-3(8.74e-08)]_[+9(1.25e-10)]_26_\ [+9(2.91e-11)]_6 chrUn_KI270467v1:2896-33 9.36e-10 10_[-3(2.37e-08)]_[+9(1.06e-10)]_4_\ [-3(2.35e-07)]_[+9(1.08e-06)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************