# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF776.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF776.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF776.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF776.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:15:09 PDT 2018)
#   negatives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF776.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:15:10 PDT 2018)
#        host: kadru
#        when: Thu May 10 19:05:08 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.250 C 0.243 G 0.256 T 0.252


MOTIF SYTGGCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     SYTGGCA    TGCCARS        113         32   1.9e-013   5.3e-009
#          CTTGGCA    TGCCAAG         41          7   1.9e-007   5.3e-003
#          CCTGGCA    TGCCAGG         42          9   1.1e-006   3.0e-002
#          GCTGGCA    TGCCAGC         40         11   2.0e-005   5.6e-001
#          GTTGGCA    TGCCAAC         19          6   6.8e-003   1.9e+002

letter-probability matrix: alength= 4 w= 7 nsites= 156 E= 5.3e-009
0.000000 0.602564 0.397436 0.000000
0.000000 0.576923 0.000000 0.423077
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAGGCCTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGGCCTC   GAGGCCTC         26          0   1.1e-008   3.1e-004
#         GAGGCCTC   GAGGCCTC         26          0   1.1e-008   3.1e-004

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.1e-004
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAGAAGCM DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGAAGCM   KGCTTCTG         26          1   1.6e-007   4.5e-003
#         CAGAAGCA   TGCTTCTG         14          0   5.7e-005   1.6e+000
#         CAGAAGCC   GGCTTCTG         12          1   1.6e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 4.5e-003
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.538462 0.461538 0.000000 0.000000


MOTIF GAGCCAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GAGCCAA    TTGGCTC         32          4   7.0e-007   1.9e-002
#          GAGCCAA    TTGGCTC         32          4   7.0e-007   1.9e-002

letter-probability matrix: alength= 4 w= 7 nsites= 35 E= 1.9e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 22.27 seconds