Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GGAGGCY 7 GGAGGCT
ATYCTCC 7 ATCCTCC
CAGTGAGY 8 CAGTGAGC
CTTGARCC 8 CTTGAGCC
CRRCCTC 7 CAGCCTC
TARTCCCA 8 TAATCCCA
GCTACTY 7 GCTACTC
AMCTCCTG 8 AACTCCTG
GAGGY 5 GAGGC
AGGCTGGW 8 AGGCTGGA
TGCAGTGR 8 TGCAGTGG
CACTWTG 7 CACTTTG
CAGGCRTG 8 CAGGCATG
AAAATWA 7 AAAATTA
AGATYGCG 8 AGATCGCG
GGGCAACA 8 GGGCAACA
CTCTACWA 8 CTCTACTA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.227 C 0.273 G 0.273 T 0.227


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CACTWTG DREME-12 chr10 - 1085230 1085236 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr7 + 1137551 1137557 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 - 1203316 1203322 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 1318409 1318415 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 - 1318630 1318636 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 - 2096002 2096008 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr16 - 2129119 2129125 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr10 + 3784063 3784069 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 + 4143278 4143284 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 - 4624877 4624883 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr10 + 5853858 5853864 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr7 + 6447230 6447236 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr10 + 8271966 8271972 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 + 8378082 8378088 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 9802854 9802860 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 - 9803081 9803087 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 10055671 10055677 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr2 - 10121747 10121753 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 - 11180163 11180169 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr18 + 12378461 12378467 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr18 - 12378524 12378530 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr18 + 12518379 12518385 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 + 12919820 12919826 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 15863592 15863598 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 16386583 16386589 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr21 + 17455007 17455013 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr8 + 17496045 17496051 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr8 + 17496208 17496214 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 17813227 17813233 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 17865349 17865355 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 18182830 18182836 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 - 18365602 18365608 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 + 19506966 19506972 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 19800392 19800398 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 - 19800406 19800412 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 + 21322706 21322712 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 24043860 24043866 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr4 - 26373030 26373036 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr8 + 26374184 26374190 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr6 + 26384393 26384399 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 + 27331725 27331731 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 - 28373684 28373690 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 28865124 28865130 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr22 - 29764761 29764767 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr21 + 31658604 31658610 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr18 - 32020306 32020312 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr11 - 32583455 32583461 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 32963467 32963473 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 + 33064095 33064101 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr6 + 33621682 33621688 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 - 34218262 34218268 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 + 34223872 34223878 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 - 34415941 34415947 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr20 - 34709667 34709673 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 - 35454326 35454332 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr22 - 35589940 35589946 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 + 37192314 37192320 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr22 - 37844826 37844832 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 38316257 38316263 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 + 38316407 38316413 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 + 38402487 38402493 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr22 + 38461961 38461967 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 + 38517870 38517876 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 38846605 38846611 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 39338045 39338051 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr21 - 39349976 39349982 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 39432089 39432095 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 39432130 39432136 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 39486210 39486216 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 - 40404062 40404068 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 - 40416627 40416633 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 - 40416757 40416763 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 40604595 40604601 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr22 - 40711422 40711428 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 + 41006216 41006222 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr15 - 42738066 42738072 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr21 + 42893939 42893945 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr5 - 43043382 43043388 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 - 43092119 43092125 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 - 43092427 43092433 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 - 43368652 43368658 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 43594585 43594591 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 + 43908486 43908492 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr20 + 44117032 44117038 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 + 44261191 44261197 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr15 - 44728596 44728602 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 45556630 45556636 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 45556941 45556947 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 + 46101503 46101509 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 46108919 46108925 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 - 46145988 46145994 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 46785133 46785139 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 - 47251104 47251110 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 47251183 47251189 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 + 49491466 49491472 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 + 49491586 49491592 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr19 + 49503029 49503035 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr19 + 49817675 49817681 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 51637242 51637248 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 + 53046243 53046249 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr18 + 54269047 54269053 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr3 - 57014943 57014949 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr12 + 57487600 57487606 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 59154028 59154034 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 - 59292194 59292200 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 + 60088574 60088580 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 62470791 62470797 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr18 - 62579026 62579032 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr20 + 62823088 62823094 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr15 + 65532377 65532383 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr15 - 66357183 66357189 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr8 - 66473396 66473402 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr18 - 70286127 70286133 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr18 - 70286392 70286398 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr15 - 72183131 72183137 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr10 + 74047183 74047189 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr15 - 74223305 74223311 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 + 75009655 75009661 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr10 - 75111071 75111077 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 - 75368481 75368487 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 - 75368804 75368810 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr15 + 75544285 75544291 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr15 - 75574265 75574271 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr15 + 75641163 75641169 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr5 + 75717859 75717865 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 + 75905337 75905343 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 + 75905669 75905675 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 + 76556792 76556798 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 76727458 76727464 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr17 - 76727655 76727661 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 77677090 77677096 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr15 + 80060675 80060681 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 - 81338229 81338235 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr5 + 81393443 81393449 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr17 + 81892224 81892230 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 84620965 84620971 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr16 - 85297654 85297660 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr16 + 85297707 85297713 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr16 - 85297769 85297775 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr16 + 85403541 85403547 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr2 - 85445700 85445706 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr9 + 86348504 86348510 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr16 - 86519990 86519996 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr16 + 87384926 87384932 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr6 - 89353541 89353547 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr12 + 93467040 93467046 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 - 98517069 98517075 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr7 + 99375814 99375820 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr7 + 100118409 100118415 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr8 - 100157770 100157776 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr7 + 101214589 101214595 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr7 - 101218534 101218540 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr10 + 101275537 101275543 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr3 + 101675846 101675852 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr10 - 102064920 102064926 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr11 - 103110270 103110276 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr10 + 103760320 103760326 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr10 - 103971530 103971536 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr4 + 107827737 107827743 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr6 + 107952509 107952515 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 - 109216881 109216887 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr5 + 110739720 110739726 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr12 + 113184576 113184582 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 + 121210531 121210537 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 - 123234060 123234066 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr12 + 123583761 123583767 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr5 + 124744520 124744526 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr12 + 124924764 124924770 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr9 + 127387897 127387903 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr12 - 132599608 132599614 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chrX + 136058601 136058607 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr4 + 139301167 139301173 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr8 - 144767470 144767476 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 - 146035938 146035944 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 - 146036235 146036241 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 146036314 146036320 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr5 - 150442956 150442962 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr6 + 150752863 150752869 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr6 + 156817387 156817393 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 - 160978509 160978515 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 160978685 160978691 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr3 + 171943509 171943515 5.41e-05 0.165 cACTTTG
CACTWTG DREME-12 chr3 - 171943818 171943824 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr5 + 172941030 172941036 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr5 + 181218581 181218587 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr3 + 186105891 186105897 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 - 210336386 210336392 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 210336535 210336541 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 + 223726813 223726819 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 225809594 225809600 5.41e-05 0.165 cactttg
CACTWTG DREME-12 chr1 - 225809657 225809663 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 - 226405564 226405570 5.41e-05 0.165 CACTTTG
CACTWTG DREME-12 chr1 + 226405867 226405873 5.41e-05 0.165 cactttg

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_24 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CACTWTG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_24 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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