# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:49:43 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:49:43 PST 2017) # host: kadru # when: Mon Dec 18 17:07:35 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.202 C 0.293 G 0.307 T 0.198 MOTIF GGAGGCY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GGAGGCY RGCCTCC 501 79 1.7e-144 4.7e-140 # GGAGGCT AGCCTCC 353 41 3.7e-090 1.0e-085 # GGAGGCC GGCCTCC 220 40 4.3e-039 1.2e-034 letter-probability matrix: alength= 4 w= 7 nsites= 728 E= 4.7e-140 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.366758 0.000000 0.633242 MOTIF ATYCTCC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATYCTCC GGAGRAT 242 25 4.2e-057 1.1e-052 # ATCCTCC GGAGGAT 189 17 1.1e-044 3.0e-040 # ATTCTCC GGAGAAT 53 8 6.2e-010 1.6e-005 letter-probability matrix: alength= 4 w= 7 nsites= 243 E= 1.1e-052 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.781893 0.000000 0.218107 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGTGAGY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAGTGAGY RCTCACTG 124 3 2.3e-036 5.9e-032 # CAGTGAGC GCTCACTG 114 2 2.6e-034 6.7e-030 # CAGTGAGT ACTCACTG 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 5.9e-032 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.919355 0.000000 0.080645 MOTIF CTTGARCC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CTTGARCC GGYTCAAG 127 7 7.7e-033 2.0e-028 # CTTGAGCC GGCTCAAG 84 5 4.4e-021 1.1e-016 # CTTGAACC GGTTCAAG 43 2 1.4e-011 3.7e-007 letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 2.0e-028 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.338583 0.000000 0.661417 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CRRCCTC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CRRCCTC GAGGYYG 220 52 1.1e-032 2.8e-028 # CAGCCTC GAGGCTG 127 24 1.3e-020 3.3e-016 # CAACCTC GAGGTTG 75 16 2.8e-011 7.1e-007 # CGGCCTC GAGGCCG 30 8 1.9e-004 4.9e+000 # CGACCTC GAGGTCG 21 7 5.8e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 236 E= 2.8e-028 0.000000 1.000000 0.000000 0.000000 0.796610 0.000000 0.203390 0.000000 0.377119 0.000000 0.622881 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TARTCCCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TARTCCCA TGGGAYTA 109 2 1.3e-032 3.3e-028 # TAATCCCA TGGGATTA 73 1 4.1e-022 1.0e-017 # TAGTCCCA TGGGACTA 36 1 1.7e-010 4.2e-006 letter-probability matrix: alength= 4 w= 8 nsites= 109 E= 3.3e-028 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.669725 0.000000 0.330275 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCTACTY DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCTACTY RAGTAGC 111 10 4.8e-025 1.2e-020 # GCTACTC GAGTAGC 75 7 1.1e-016 2.8e-012 # GCTACTT AAGTAGC 36 3 1.1e-008 2.9e-004 letter-probability matrix: alength= 4 w= 7 nsites= 111 E= 1.2e-020 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.675676 0.000000 0.324324 MOTIF AMCTCCTG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AMCTCCTG CAGGAGKT 80 3 7.2e-022 1.8e-017 # AACTCCTG CAGGAGTT 52 0 7.0e-017 1.7e-012 # ACCTCCTG CAGGAGGT 28 3 1.8e-006 4.5e-002 letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 1.8e-017 1.000000 0.000000 0.000000 0.000000 0.650000 0.350000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GAGGY DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GAGGY RCCTC 447 303 4.6e-018 1.2e-013 # GAGGC GCCTC 349 215 5.6e-015 1.4e-010 # GAGGT ACCTC 175 129 1.4e-003 3.5e+001 letter-probability matrix: alength= 4 w= 5 nsites= 701 E= 1.2e-013 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.704708 0.000000 0.295292 MOTIF AGGCTGGW DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGGCTGGW WCCAGCCT 69 4 1.9e-017 4.6e-013 # AGGCTGGA TCCAGCCT 40 2 1.1e-010 2.7e-006 # AGGCTGGT ACCAGCCT 29 2 1.7e-007 4.1e-003 letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 4.6e-013 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.579710 0.000000 0.000000 0.420290 MOTIF TGCAGTGR DREME-11 # Word RC Word Pos Neg P-value E-value # BEST TGCAGTGR YCACTGCA 56 3 1.8e-014 4.2e-010 # TGCAGTGG CCACTGCA 50 3 1.1e-012 2.5e-008 # TGCAGTGA TCACTGCA 8 0 3.8e-003 9.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 4.2e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.137931 0.000000 0.862069 0.000000 MOTIF CACTWTG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CACTWTG CAWAGTG 52 5 1.2e-011 2.9e-007 # CACTTTG CAAAGTG 42 4 1.4e-009 3.3e-005 # CACTATG CATAGTG 16 1 1.3e-004 3.0e+000 letter-probability matrix: alength= 4 w= 7 nsites= 59 E= 2.9e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.271186 0.000000 0.000000 0.728814 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAGGCRTG DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CAGGCRTG CAYGCCTG 49 5 8.5e-011 2.0e-006 # CAGGCATG CATGCCTG 34 4 2.1e-007 4.9e-003 # CAGGCGTG CACGCCTG 16 1 1.3e-004 3.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 2.0e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.680000 0.000000 0.320000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAAATWA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAAATWA TWATTTT 27 0 5.5e-009 1.3e-004 # AAAATTA TAATTTT 17 0 6.8e-006 1.6e-001 # AAAATAA TTATTTT 10 0 9.4e-004 2.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 29 E= 1.3e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.379310 0.000000 0.000000 0.620690 1.000000 0.000000 0.000000 0.000000 MOTIF AGATYGCG DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AGATYGCG CGCRATCT 27 1 8.2e-008 1.9e-003 # AGATCGCG CGCGATCT 20 1 9.1e-006 2.1e-001 # AGATTGCG CGCAATCT 7 0 7.7e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.9e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.740741 0.000000 0.259259 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGGCAACA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST GGGCAACA TGTTGCCC 29 2 1.7e-007 4.0e-003 # GGGCAACA TGTTGCCC 29 2 1.7e-007 4.0e-003 letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 4.0e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCTACWA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CTCTACWA TWGTAGAG 20 0 8.1e-007 1.9e-002 # CTCTACAA TTGTAGAG 10 0 9.4e-004 2.2e+001 # CTCTACTA TAGTAGAG 10 0 9.4e-004 2.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.9e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 72.77 seconds