# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:14:40 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF770.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:14:40 PDT 2018) # host: wotan # when: Thu May 10 19:35:42 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.189 C 0.309 G 0.312 T 0.190 MOTIF BRGCCTCC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST BRGCCTCC GGAGGCYV 501 52 8.4e-168 2.3e-163 # CAGCCTCC GGAGGCTG 274 13 2.0e-081 5.5e-077 # CGGCCTCC GGAGGCCG 133 9 7.0e-033 1.9e-028 # TGGCCTCC GGAGGCCA 91 5 3.0e-023 8.2e-019 # GAGCCTCC GGAGGCTC 54 8 3.4e-010 9.5e-006 # GGGCCTCC GGAGGCCC 65 15 2.3e-009 6.5e-005 # TAGCCTCC GGAGGCTA 12 2 6.2e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 720 E= 2.3e-163 0.000000 0.672222 0.172222 0.155556 0.559722 0.000000 0.440278 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATYCTCC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATYCTCC GGAGRAT 189 14 2.6e-047 7.0e-043 # ATCCTCC GGAGGAT 156 9 1.4e-040 3.7e-036 # ATTCTCC GGAGAAT 33 5 1.5e-006 4.1e-002 letter-probability matrix: alength= 4 w= 7 nsites= 191 E= 7.0e-043 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.827225 0.000000 0.172775 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CRRCCTC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CRRCCTC GAGGYYG 203 53 2.4e-027 6.3e-023 # CAGCCTC GAGGCTG 118 25 1.0e-017 2.7e-013 # CAACCTC GAGGTTG 49 9 2.2e-008 5.9e-004 # CGGCCTC GAGGCCG 41 15 2.6e-004 6.7e+000 # CGACCTC GAGGTCG 20 5 1.9e-003 4.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 220 E= 6.3e-023 0.000000 1.000000 0.000000 0.000000 0.718182 0.000000 0.281818 0.000000 0.295455 0.000000 0.704545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TARTCCCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TARTCCCA TGGGAYTA 78 0 2.3e-025 5.9e-021 # TAATCCCA TGGGATTA 51 0 1.5e-016 3.8e-012 # TAGTCCCA TGGGACTA 27 0 5.5e-009 1.4e-004 letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 5.9e-021 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.653846 0.000000 0.346154 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGBCTCAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GGBCTCAA TTGAGVCC 86 5 1.1e-021 2.8e-017 # GGGCTCAA TTGAGCCC 39 2 2.2e-010 5.7e-006 # GGCCTCAA TTGAGGCC 38 2 4.3e-010 1.1e-005 # GGTCTCAA TTGAGACC 15 1 2.4e-004 6.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 2.8e-017 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.432990 0.412371 0.154639 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGTGAGY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAGTGAGY RCTCACTG 82 5 1.8e-020 4.7e-016 # CAGTGAGC GCTCACTG 75 5 2.5e-018 6.3e-014 # CAGTGAGT ACTCACTG 7 0 7.7e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 4.7e-016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.914634 0.000000 0.085366 MOTIF GCTACTY DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCTACTY RAGTAGC 78 15 1.6e-012 4.2e-008 # GCTACTC GAGTAGC 54 9 1.3e-009 3.3e-005 # GCTACTT AAGTAGC 24 6 6.3e-004 1.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 78 E= 4.2e-008 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.692308 0.000000 0.307692 MOTIF GGAGGY DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GGAGGY RCCTCC 233 126 9.1e-012 2.3e-007 # GGAGGC GCCTCC 155 78 1.2e-008 3.0e-004 # GGAGGT ACCTCC 96 53 1.1e-004 2.8e+000 letter-probability matrix: alength= 4 w= 6 nsites= 302 E= 2.3e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.632450 0.000000 0.367550 MOTIF CCACTGCA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CCACTGCA TGCAGTGG 33 1 1.3e-009 3.4e-005 # CCACTGCA TGCAGTGG 33 1 1.3e-009 3.4e-005 letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.4e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTTGARCC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CTTGARCC GGYTCAAG 47 6 1.4e-009 3.6e-005 # CTTGAACC GGTTCAAG 24 2 4.3e-006 1.1e-001 # CTTGAGCC GGCTCAAG 23 4 1.3e-004 3.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 3.6e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.510638 0.000000 0.489362 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTTGSCCA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GTTGSCCA TGGSCAAC 41 4 2.6e-009 6.6e-005 # GTTGCCCA TGGGCAAC 30 4 2.3e-006 5.8e-002 # GTTGGCCA TGGCCAAC 11 0 4.7e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 6.6e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.731707 0.268293 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAHTA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AAAHTA TADTTT 39 4 9.3e-009 2.3e-004 # AAATTA TAATTT 18 1 3.4e-005 8.5e-001 # AAACTA TAGTTT 9 0 1.9e-003 4.8e+001 # AAAATA TATTTT 16 3 2.1e-003 5.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 46 E= 2.3e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.413043 0.195652 0.000000 0.391304 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAGTGC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AAAGTGC GCACTTT 35 3 2.2e-008 5.4e-004 # AAAGTGC GCACTTT 35 3 2.2e-008 5.4e-004 letter-probability matrix: alength= 4 w= 7 nsites= 35 E= 5.4e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAYTCCT DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAYTCCT AGGARTT 47 9 6.9e-008 1.7e-003 # AACTCCT AGGAGTT 36 8 9.1e-006 2.3e-001 # AATTCCT AGGAATT 11 1 3.1e-003 7.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 47 E= 1.7e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.765957 0.000000 0.234043 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CAGGCRTG DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CAGGCRTG CAYGCCTG 40 7 3.4e-007 8.3e-003 # CAGGCATG CATGCCTG 23 4 1.3e-004 3.3e+000 # CAGGCGTG CACGCCTG 17 3 1.2e-003 2.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 8.3e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.575000 0.000000 0.425000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGGCTGGW DREME-16 # Word RC Word Pos Neg P-value E-value # BEST AGGCTGGW WCCAGCCT 36 6 9.7e-007 2.4e-002 # AGGCTGGA TCCAGCCT 23 5 4.0e-004 9.8e+000 # AGGCTGGT ACCAGCCT 13 1 8.7e-004 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.4e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.638889 0.000000 0.000000 0.361111 # Stopping reason: E-value threshold exceeded # Running time: 209.34 seconds