Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CAGAGARG | 8 | CAGAGAGG |
CACACAGC | 8 | CACACAGC |
ACCTTRG | 7 | ACCTTGG |
AAGTNAC | 7 | AAGTCAC |
TCTGYAAA | 8 | TCTGTAAA |
ACYGAGGC | 8 | ACTGAGGC |
GCACAGM | 7 | GCACAGC |
GAGGAAA | 7 | GAGGAAA |
CTGGGM | 6 | CTGGGC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.222 C 0.278 G 0.278 T 0.222
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
ACCTTRG | DREME-3 | chr20 | + | 653000 | 653006 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr16 | + | 1163028 | 1163034 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr20 | - | 1895696 | 1895702 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr7 | - | 2403125 | 2403131 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr7 | + | 2403857 | 2403863 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr11 | + | 2893062 | 2893068 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 3321162 | 3321168 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr4 | + | 3881039 | 3881045 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr19 | - | 4060762 | 4060768 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | + | 4296165 | 4296171 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr17 | - | 4507348 | 4507354 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | - | 4507593 | 4507599 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 4601091 | 4601097 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 5622215 | 5622221 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 5622364 | 5622370 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | - | 6095028 | 6095034 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | + | 6095236 | 6095242 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr5 | - | 6486217 | 6486223 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr3 | - | 9422885 | 9422891 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr3 | - | 9951816 | 9951822 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 10103178 | 10103184 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | + | 10754355 | 10754361 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | + | 11523322 | 11523328 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr3 | + | 12995272 | 12995278 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr3 | - | 13479914 | 13479920 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr16 | + | 15055633 | 15055639 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | - | 16125526 | 16125532 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | - | 16125855 | 16125861 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | + | 17209744 | 17209750 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr19 | - | 17306110 | 17306116 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | - | 17710850 | 17710856 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 18278995 | 18279001 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | + | 18342254 | 18342260 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | - | 18358787 | 18358793 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | - | 18379932 | 18379938 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 19062892 | 19062898 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | + | 19063039 | 19063045 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | + | 21648092 | 21648098 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | + | 21648456 | 21648462 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr16 | + | 23149919 | 23149925 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | - | 24995851 | 24995857 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | - | 25027301 | 25027307 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | - | 26658401 | 26658407 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | - | 27378085 | 27378091 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr6 | - | 27389070 | 27389076 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | - | 28551614 | 28551620 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | + | 29109259 | 29109265 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr17 | + | 29212481 | 29212487 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr22 | + | 29307258 | 29307264 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr7 | - | 29990305 | 29990311 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | + | 30842973 | 30842979 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | - | 30901963 | 30901969 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr16 | - | 30951403 | 30951409 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr16 | - | 30984897 | 30984903 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | + | 31123393 | 31123399 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | + | 31240145 | 31240151 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | + | 31694141 | 31694147 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | + | 31754217 | 31754223 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr22 | + | 31754266 | 31754272 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr19 | - | 33762821 | 33762827 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr20 | + | 33915696 | 33915702 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | - | 35383394 | 35383400 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr6 | - | 36122154 | 36122160 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr6 | + | 37051974 | 37051980 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr22 | - | 38453321 | 38453327 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | + | 39195090 | 39195096 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr22 | + | 39621004 | 39621010 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr19 | - | 40553243 | 40553249 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | + | 40715799 | 40715805 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | + | 40739305 | 40739311 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 40739402 | 40739408 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr21 | + | 42086619 | 42086625 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr22 | + | 42297179 | 42297185 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | - | 42554127 | 42554133 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | - | 43861863 | 43861869 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr22 | + | 43861990 | 43861996 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | + | 44208839 | 44208845 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr19 | - | 44748111 | 44748117 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 45405145 | 45405151 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | + | 45405162 | 45405168 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr19 | - | 45727612 | 45727618 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr11 | - | 46238929 | 46238935 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr20 | - | 47359689 | 47359695 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr17 | + | 47649093 | 47649099 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr17 | + | 47649165 | 47649171 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr17 | + | 49875103 | 49875109 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr20 | + | 49916125 | 49916131 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr17 | + | 49979927 | 49979933 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr20 | + | 50629907 | 50629913 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr12 | - | 52327881 | 52327887 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | - | 53318127 | 53318133 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr12 | - | 53740304 | 53740310 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chrX | + | 54494377 | 54494383 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chrX | + | 54494592 | 54494598 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr19 | + | 55391603 | 55391609 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr19 | + | 55643318 | 55643324 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr16 | - | 58488131 | 58488137 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | - | 61149870 | 61149876 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr15 | - | 65330147 | 65330153 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr10 | + | 71236173 | 71236179 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr15 | - | 74781289 | 74781295 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr10 | - | 75235542 | 75235548 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr10 | - | 79124083 | 79124089 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr10 | + | 79124190 | 79124196 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr10 | - | 79124371 | 79124377 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr16 | + | 85113342 | 85113348 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr16 | + | 85585915 | 85585921 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr16 | + | 85592758 | 85592764 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr16 | + | 87493455 | 87493461 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr15 | - | 90184661 | 90184667 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr7 | + | 101856868 | 101856874 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr12 | - | 111396868 | 111396874 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chrX | - | 120309645 | 120309651 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr12 | - | 124510536 | 124510542 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr12 | - | 124516994 | 124517000 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr12 | - | 124517167 | 124517173 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr12 | + | 124563963 | 124563969 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr5 | - | 126595132 | 126595138 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr9 | - | 129495809 | 129495815 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr9 | + | 129603320 | 129603326 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr8 | - | 130015455 | 130015461 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr8 | + | 130518335 | 130518341 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr8 | + | 135457113 | 135457119 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr9 | - | 135992493 | 135992499 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr9 | + | 135992589 | 135992595 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr6 | + | 158026339 | 158026345 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr1 | - | 171644896 | 171644902 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr1 | - | 234983770 | 234983776 | 6.54e-05 | 0.294 | ACCTTGG |
ACCTTRG | DREME-3 | chr2 | + | 239730442 | 239730448 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr2 | + | 239730534 | 239730540 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr2 | + | 239730626 | 239730632 | 6.54e-05 | 0.294 | accttgg |
ACCTTRG | DREME-3 | chr2 | + | 239730725 | 239730731 | 6.54e-05 | 0.294 | accttgg |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_7 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif ACCTTRG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_7 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.