Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
CAGAGARG 8 CAGAGAGG
CACACAGC 8 CACACAGC
ACCTTRG 7 ACCTTGG
AAGTNAC 7 AAGTCAC
TCTGYAAA 8 TCTGTAAA
ACYGAGGC 8 ACTGAGGC
GCACAGM 7 GCACAGC
GAGGAAA 7 GAGGAAA
CTGGGM 6 CTGGGC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.222 C 0.278 G 0.278 T 0.222


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
ACCTTRG DREME-3 chr20 + 653000 653006 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr16 + 1163028 1163034 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr20 - 1895696 1895702 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr7 - 2403125 2403131 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr7 + 2403857 2403863 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr11 + 2893062 2893068 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 3321162 3321168 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr4 + 3881039 3881045 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr19 - 4060762 4060768 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 + 4296165 4296171 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr17 - 4507348 4507354 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 - 4507593 4507599 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 4601091 4601097 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 5622215 5622221 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 5622364 5622370 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 - 6095028 6095034 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 + 6095236 6095242 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr5 - 6486217 6486223 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr3 - 9422885 9422891 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr3 - 9951816 9951822 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 10103178 10103184 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 + 10754355 10754361 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 + 11523322 11523328 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr3 + 12995272 12995278 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr3 - 13479914 13479920 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr16 + 15055633 15055639 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 - 16125526 16125532 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 - 16125855 16125861 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 + 17209744 17209750 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr19 - 17306110 17306116 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 - 17710850 17710856 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 18278995 18279001 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 + 18342254 18342260 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 - 18358787 18358793 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 - 18379932 18379938 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 19062892 19062898 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 + 19063039 19063045 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 + 21648092 21648098 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 + 21648456 21648462 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr16 + 23149919 23149925 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 - 24995851 24995857 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 - 25027301 25027307 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 - 26658401 26658407 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 - 27378085 27378091 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr6 - 27389070 27389076 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 - 28551614 28551620 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 + 29109259 29109265 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr17 + 29212481 29212487 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr22 + 29307258 29307264 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr7 - 29990305 29990311 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 + 30842973 30842979 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 - 30901963 30901969 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr16 - 30951403 30951409 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr16 - 30984897 30984903 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 + 31123393 31123399 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 + 31240145 31240151 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 + 31694141 31694147 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 + 31754217 31754223 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr22 + 31754266 31754272 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr19 - 33762821 33762827 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr20 + 33915696 33915702 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 - 35383394 35383400 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr6 - 36122154 36122160 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr6 + 37051974 37051980 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr22 - 38453321 38453327 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 + 39195090 39195096 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr22 + 39621004 39621010 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr19 - 40553243 40553249 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 + 40715799 40715805 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 + 40739305 40739311 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 40739402 40739408 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr21 + 42086619 42086625 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr22 + 42297179 42297185 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 - 42554127 42554133 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 - 43861863 43861869 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr22 + 43861990 43861996 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 + 44208839 44208845 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr19 - 44748111 44748117 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 45405145 45405151 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 + 45405162 45405168 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr19 - 45727612 45727618 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr11 - 46238929 46238935 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr20 - 47359689 47359695 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr17 + 47649093 47649099 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr17 + 47649165 47649171 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr17 + 49875103 49875109 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr20 + 49916125 49916131 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr17 + 49979927 49979933 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr20 + 50629907 50629913 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr12 - 52327881 52327887 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 - 53318127 53318133 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr12 - 53740304 53740310 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chrX + 54494377 54494383 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chrX + 54494592 54494598 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr19 + 55391603 55391609 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr19 + 55643318 55643324 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr16 - 58488131 58488137 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 - 61149870 61149876 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr15 - 65330147 65330153 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr10 + 71236173 71236179 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr15 - 74781289 74781295 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr10 - 75235542 75235548 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr10 - 79124083 79124089 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr10 + 79124190 79124196 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr10 - 79124371 79124377 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr16 + 85113342 85113348 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr16 + 85585915 85585921 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr16 + 85592758 85592764 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr16 + 87493455 87493461 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr15 - 90184661 90184667 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr7 + 101856868 101856874 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr12 - 111396868 111396874 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chrX - 120309645 120309651 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr12 - 124510536 124510542 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr12 - 124516994 124517000 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr12 - 124517167 124517173 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr12 + 124563963 124563969 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr5 - 126595132 126595138 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr9 - 129495809 129495815 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr9 + 129603320 129603326 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr8 - 130015455 130015461 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr8 + 130518335 130518341 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr8 + 135457113 135457119 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr9 - 135992493 135992499 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr9 + 135992589 135992595 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr6 + 158026339 158026345 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr1 - 171644896 171644902 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr1 - 234983770 234983776 6.54e-05 0.294 ACCTTGG
ACCTTRG DREME-3 chr2 + 239730442 239730448 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr2 + 239730534 239730540 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr2 + 239730626 239730632 6.54e-05 0.294 accttgg
ACCTTRG DREME-3 chr2 + 239730725 239730731 6.54e-05 0.294 accttgg

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_7 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif ACCTTRG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_7 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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