Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CAGAGARG | 8 | CAGAGAGG |
CACACAGC | 8 | CACACAGC |
ACCTTRG | 7 | ACCTTGG |
AAGTNAC | 7 | AAGTCAC |
TCTGYAAA | 8 | TCTGTAAA |
ACYGAGGC | 8 | ACTGAGGC |
GCACAGM | 7 | GCACAGC |
GAGGAAA | 7 | GAGGAAA |
CTGGGM | 6 | CTGGGC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.222 C 0.278 G 0.278 T 0.222
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
GAGGAAA | DREME-8 | chr20 | + | 652798 | 652804 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr1 | - | 1282263 | 1282269 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | - | 2231784 | 2231790 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 2285652 | 2285658 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr20 | + | 2658911 | 2658917 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 2981967 | 2981973 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | - | 3320993 | 3320999 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 3357363 | 3357369 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | - | 3357540 | 3357546 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr4 | + | 3880883 | 3880889 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr4 | + | 3880931 | 3880937 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr4 | + | 3881150 | 3881156 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | + | 4296266 | 4296272 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr17 | + | 4507559 | 4507565 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | + | 5622181 | 5622187 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | - | 8525966 | 8525972 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 10897276 | 10897282 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | - | 11156308 | 11156314 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 11344831 | 11344837 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 11352293 | 11352299 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr3 | + | 12995308 | 12995314 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr3 | + | 13248770 | 13248776 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr3 | - | 14423513 | 14423519 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr3 | + | 14438438 | 14438444 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | + | 16147729 | 16147735 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | + | 16161019 | 16161025 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | - | 17692749 | 17692755 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 18279077 | 18279083 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 18301657 | 18301663 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr16 | + | 23149650 | 23149656 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr16 | + | 23435504 | 23435510 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr22 | + | 26428914 | 26428920 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr22 | - | 27405924 | 27405930 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | - | 27556440 | 27556446 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr8 | - | 27772812 | 27772818 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 29212447 | 29212453 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr7 | + | 29990489 | 29990495 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr16 | - | 30598150 | 30598156 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr6 | + | 30743959 | 30743965 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr16 | + | 30805497 | 30805503 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr16 | + | 30951367 | 30951373 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr22 | - | 31123227 | 31123233 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr22 | - | 31123410 | 31123416 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | - | 31694335 | 31694341 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr6 | - | 37019769 | 37019775 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr22 | - | 37167229 | 37167235 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr6 | - | 37514872 | 37514878 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 37656028 | 37656034 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr22 | + | 37681873 | 37681879 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr22 | - | 37682015 | 37682021 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr2 | - | 37925680 | 37925686 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 38252698 | 38252704 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 38667402 | 38667408 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | - | 38667491 | 38667497 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 39304916 | 39304922 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr22 | - | 39436471 | 39436477 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 40374314 | 40374320 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 40417975 | 40417981 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 40552803 | 40552809 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr21 | - | 41602307 | 41602313 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr21 | - | 42086518 | 42086524 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 42222276 | 42222282 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 42682039 | 42682045 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | + | 43527351 | 43527357 | 5.21e-05 | 0.251 | gaggAAA |
GAGGAAA | DREME-8 | chr19 | - | 43669433 | 43669439 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 44208796 | 44208802 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 44748079 | 44748085 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr17 | + | 45148567 | 45148573 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | - | 45585231 | 45585237 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 46394726 | 46394732 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | + | 46529918 | 46529924 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | + | 48184719 | 48184725 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr20 | - | 50284241 | 50284247 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 50376302 | 50376308 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chrX | + | 53093534 | 53093540 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr19 | + | 53881617 | 53881623 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | + | 53881807 | 53881813 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr19 | - | 55643546 | 55643552 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 58631594 | 58631600 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | - | 66929937 | 66929943 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr11 | + | 67382829 | 67382835 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr10 | - | 72079052 | 72079058 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr15 | - | 74781188 | 74781194 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 75525200 | 75525206 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr17 | + | 76014800 | 76014806 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr17 | - | 76275004 | 76275010 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr10 | - | 79416643 | 79416649 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr10 | - | 79416788 | 79416794 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr16 | - | 88521871 | 88521877 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr12 | - | 94875485 | 94875491 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr9 | - | 97804217 | 97804223 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr7 | - | 101856758 | 101856764 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr14 | - | 102537930 | 102537936 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr14 | - | 105248087 | 105248093 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr14 | + | 105248094 | 105248100 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr5 | + | 107673220 | 107673226 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr12 | + | 109775199 | 109775205 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr12 | - | 124435901 | 124435907 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr12 | + | 124517131 | 124517137 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr12 | - | 124721307 | 124721313 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr5 | - | 126595047 | 126595053 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr9 | + | 126705773 | 126705779 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr9 | - | 129495610 | 129495616 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr9 | + | 129603495 | 129603501 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr9 | - | 130339607 | 130339613 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr8 | - | 130518369 | 130518375 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr9 | + | 135992528 | 135992534 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr5 | - | 139635647 | 139635653 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr7 | + | 148987618 | 148987624 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr7 | + | 149065791 | 149065797 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr5 | - | 150436560 | 150436566 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | + | 154767876 | 154767882 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr3 | + | 157088831 | 157088837 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | + | 171644860 | 171644866 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr1 | + | 171645123 | 171645129 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr2 | + | 176106295 | 176106301 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr5 | + | 177363729 | 177363735 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr5 | + | 177390943 | 177390949 | 5.21e-05 | 0.251 | gaggaaa |
GAGGAAA | DREME-8 | chr5 | - | 177453283 | 177453289 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr5 | + | 177497889 | 177497895 | 5.21e-05 | 0.251 | GAGGAAA |
GAGGAAA | DREME-8 | chr1 | - | 223712186 | 223712192 | 5.21e-05 | 0.251 | GAGGAAA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif GAGGAAA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.