Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
CAGAGARG 8 CAGAGAGG
CACACAGC 8 CACACAGC
ACCTTRG 7 ACCTTGG
AAGTNAC 7 AAGTCAC
TCTGYAAA 8 TCTGTAAA
ACYGAGGC 8 ACTGAGGC
GCACAGM 7 GCACAGC
GAGGAAA 7 GAGGAAA
CTGGGM 6 CTGGGC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.222 C 0.278 G 0.278 T 0.222


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GAGGAAA DREME-8 chr20 + 652798 652804 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr1 - 1282263 1282269 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 - 2231784 2231790 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 2285652 2285658 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr20 + 2658911 2658917 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 2981967 2981973 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 - 3320993 3320999 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 3357363 3357369 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 - 3357540 3357546 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr4 + 3880883 3880889 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr4 + 3880931 3880937 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr4 + 3881150 3881156 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 + 4296266 4296272 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr17 + 4507559 4507565 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 + 5622181 5622187 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 - 8525966 8525972 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 10897276 10897282 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 - 11156308 11156314 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 11344831 11344837 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 11352293 11352299 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr3 + 12995308 12995314 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr3 + 13248770 13248776 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr3 - 14423513 14423519 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr3 + 14438438 14438444 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 + 16147729 16147735 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 + 16161019 16161025 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 - 17692749 17692755 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 18279077 18279083 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 18301657 18301663 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr16 + 23149650 23149656 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr16 + 23435504 23435510 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr22 + 26428914 26428920 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr22 - 27405924 27405930 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 - 27556440 27556446 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr8 - 27772812 27772818 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 29212447 29212453 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr7 + 29990489 29990495 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr16 - 30598150 30598156 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr6 + 30743959 30743965 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr16 + 30805497 30805503 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr16 + 30951367 30951373 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr22 - 31123227 31123233 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr22 - 31123410 31123416 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 - 31694335 31694341 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr6 - 37019769 37019775 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr22 - 37167229 37167235 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr6 - 37514872 37514878 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 37656028 37656034 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr22 + 37681873 37681879 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr22 - 37682015 37682021 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr2 - 37925680 37925686 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 38252698 38252704 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 38667402 38667408 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 - 38667491 38667497 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 39304916 39304922 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr22 - 39436471 39436477 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 40374314 40374320 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 40417975 40417981 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 40552803 40552809 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr21 - 41602307 41602313 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr21 - 42086518 42086524 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 42222276 42222282 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 42682039 42682045 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 + 43527351 43527357 5.21e-05 0.251 gaggAAA
GAGGAAA DREME-8 chr19 - 43669433 43669439 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 44208796 44208802 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 44748079 44748085 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr17 + 45148567 45148573 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 - 45585231 45585237 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 46394726 46394732 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 + 46529918 46529924 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 + 48184719 48184725 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr20 - 50284241 50284247 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 50376302 50376308 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chrX + 53093534 53093540 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr19 + 53881617 53881623 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 + 53881807 53881813 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr19 - 55643546 55643552 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 58631594 58631600 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 - 66929937 66929943 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr11 + 67382829 67382835 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr10 - 72079052 72079058 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr15 - 74781188 74781194 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 75525200 75525206 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr17 + 76014800 76014806 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr17 - 76275004 76275010 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr10 - 79416643 79416649 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr10 - 79416788 79416794 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr16 - 88521871 88521877 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr12 - 94875485 94875491 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr9 - 97804217 97804223 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr7 - 101856758 101856764 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr14 - 102537930 102537936 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr14 - 105248087 105248093 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr14 + 105248094 105248100 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr5 + 107673220 107673226 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr12 + 109775199 109775205 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr12 - 124435901 124435907 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr12 + 124517131 124517137 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr12 - 124721307 124721313 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr5 - 126595047 126595053 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr9 + 126705773 126705779 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr9 - 129495610 129495616 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr9 + 129603495 129603501 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr9 - 130339607 130339613 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr8 - 130518369 130518375 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr9 + 135992528 135992534 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr5 - 139635647 139635653 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr7 + 148987618 148987624 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr7 + 149065791 149065797 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr5 - 150436560 150436566 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 + 154767876 154767882 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr3 + 157088831 157088837 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 + 171644860 171644866 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr1 + 171645123 171645129 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr2 + 176106295 176106301 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr5 + 177363729 177363735 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr5 + 177390943 177390949 5.21e-05 0.251 gaggaaa
GAGGAAA DREME-8 chr5 - 177453283 177453289 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr5 + 177497889 177497895 5.21e-05 0.251 GAGGAAA
GAGGAAA DREME-8 chr1 - 223712186 223712192 5.21e-05 0.251 GAGGAAA

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif GAGGAAA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_13 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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