# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:47:43 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:47:44 PST 2017) # host: indra # when: Mon Dec 18 17:02:23 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.226 C 0.273 G 0.277 T 0.224 MOTIF CAGAGARG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAGAGARG CYTCTCTG 317 25 8.3e-088 2.5e-083 # CAGAGAGG CCTCTCTG 286 15 2.4e-084 7.2e-080 # CAGAGAAG CTTCTCTG 33 10 2.4e-004 7.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 325 E= 2.5e-083 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.101538 0.000000 0.898462 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CACACAGC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CACACAGC GCTGTGTG 291 21 2.8e-080 8.2e-076 # CACACAGC GCTGTGTG 291 21 2.8e-080 8.2e-076 letter-probability matrix: alength= 4 w= 8 nsites= 309 E= 8.2e-076 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACCTTRG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACCTTRG CYAAGGT 88 10 3.2e-018 9.5e-014 # ACCTTGG CCAAGGT 69 5 1.5e-016 4.5e-012 # ACCTTAG CTAAGGT 20 5 1.9e-003 5.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 89 E= 9.5e-014 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.224719 0.000000 0.775281 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAGTNAC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AAGTNAC GTNACTT 96 19 4.8e-015 1.4e-010 # AAGTCAC GTGACTT 46 4 1.1e-010 3.1e-006 # AAGTGAC GTCACTT 41 6 5.3e-008 1.5e-003 # AAGTTAC GTAACTT 32 6 9.2e-006 2.7e-001 # AAGTAAC GTTACTT 23 4 1.3e-004 3.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 104 E= 1.4e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.153846 0.346154 0.269231 0.230769 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCTGYAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TCTGYAAA TTTRCAGA 37 1 8.2e-011 2.4e-006 # TCTGTAAA TTTACAGA 25 0 2.3e-008 6.7e-004 # TCTGCAAA TTTGCAGA 12 1 1.6e-003 4.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 2.4e-006 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.324324 0.000000 0.675676 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACYGAGGC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ACYGAGGC GCCTCRGT 38 2 4.3e-010 1.3e-005 # ACTGAGGC GCCTCAGT 32 2 2.4e-008 6.9e-004 # ACCGAGGC GCCTCGGT 7 0 7.7e-003 2.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.3e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.214286 0.000000 0.785714 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCACAGM DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCACAGM KCTGTGC 109 45 1.8e-008 5.3e-004 # GCACAGC GCTGTGC 72 30 8.7e-006 2.5e-001 # GCACAGA TCTGTGC 42 15 1.7e-004 4.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 136 E= 5.3e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.397059 0.602941 0.000000 0.000000 MOTIF GAGGAAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GAGGAAA TTTCCTC 33 4 3.8e-007 1.1e-002 # GAGGAAA TTTCCTC 33 4 3.8e-007 1.1e-002 letter-probability matrix: alength= 4 w= 7 nsites= 34 E= 1.1e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGGGM DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CTGGGM KCCCAG 167 97 6.8e-007 2.0e-002 # CTGGGC GCCCAG 107 63 1.8e-004 5.0e+000 # CTGGGA TCCCAG 72 39 6.7e-004 1.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 194 E= 2.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.386598 0.613402 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 41.91 seconds