Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues
MOTIFS /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CAGAGAVG | 8 | CAGAGAGG |
CACACAGY | 8 | CACACAGC |
ACCTTRG | 7 | ACCTTGG |
AAGTHACT | 8 | AAGTCACT |
AAAMTGR | 7 | AAAATGA |
ACAGATGM | 8 | ACAGATGA |
GCTYTGCC | 8 | GCTCTGCC |
GCCTCR | 6 | GCCTCA |
GGGCAAGK | 8 | GGGCAAGT |
Random model letter frequencies (/srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.239 C 0.261 G 0.261 T 0.239
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
ACAGATGM | DREME-6 | chr6 | - | 3162360 | 3162367 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | - | 3357545 | 3357552 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | + | 10908545 | 10908552 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr19 | - | 11352298 | 11352305 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr1 | - | 12540875 | 12540882 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr1 | + | 16147723 | 16147730 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr1 | + | 16931666 | 16931673 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr1 | + | 17669459 | 17669466 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr19 | - | 18030290 | 18030297 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | - | 18278774 | 18278781 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr1 | + | 19326096 | 19326103 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr17 | + | 21296704 | 21296711 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr16 | - | 21553905 | 21553912 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr22 | + | 27194530 | 27194537 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr17 | + | 28551574 | 28551581 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr16 | - | 30951316 | 30951323 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr16 | + | 30951361 | 30951368 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr22 | + | 31123304 | 31123311 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr20 | - | 33792132 | 33792139 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr21 | - | 34865041 | 34865048 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr8 | - | 37613122 | 37613129 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | - | 39316132 | 39316139 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | + | 39845224 | 39845231 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | - | 40465193 | 40465200 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr22 | - | 41567352 | 41567359 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr22 | - | 46038324 | 46038331 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | + | 46394720 | 46394727 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr19 | + | 48489716 | 48489723 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr17 | - | 49875143 | 49875150 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr19 | - | 55391644 | 55391651 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr16 | - | 56610789 | 56610796 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr7 | - | 73645870 | 73645877 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr15 | + | 89335762 | 89335769 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr9 | - | 89598466 | 89598473 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr15 | + | 90184504 | 90184511 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr2 | + | 96534059 | 96534066 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr12 | - | 109093845 | 109093852 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr12 | - | 109718051 | 109718058 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr12 | + | 110744726 | 110744733 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr12 | + | 113100929 | 113100936 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr3 | + | 120596118 | 120596125 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr12 | - | 122960425 | 122960432 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr3 | + | 129602881 | 129602888 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr9 | - | 132266245 | 132266252 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr10 | + | 132336653 | 132336660 | 1.39e-05 | 0.166 | acagatga |
ACAGATGM | DREME-6 | chr5 | - | 171693154 | 171693161 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr1 | - | 223032389 | 223032396 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr1 | - | 226950537 | 226950544 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr1 | - | 234983759 | 234983766 | 1.39e-05 | 0.166 | ACAGATGA |
ACAGATGM | DREME-6 | chr17 | + | 7712654 | 7712661 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr19 | + | 16141136 | 16141143 | 2.91e-05 | 0.266 | acagatgc |
ACAGATGM | DREME-6 | chr20 | + | 25237708 | 25237715 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr17 | + | 26603909 | 26603916 | 2.91e-05 | 0.266 | acagatgc |
ACAGATGM | DREME-6 | chr22 | - | 36239514 | 36239521 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr19 | + | 39159358 | 39159365 | 2.91e-05 | 0.266 | acagatgc |
ACAGATGM | DREME-6 | chr19 | + | 40335925 | 40335932 | 2.91e-05 | 0.266 | acagatgc |
ACAGATGM | DREME-6 | chr15 | - | 66787485 | 66787492 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr1 | + | 66925655 | 66925662 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr10 | + | 71975264 | 71975271 | 2.91e-05 | 0.266 | acagatgc |
ACAGATGM | DREME-6 | chr16 | - | 85586127 | 85586134 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr14 | - | 102537886 | 102537893 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr5 | - | 107672928 | 107672935 | 2.91e-05 | 0.266 | ACAGATGC |
ACAGATGM | DREME-6 | chr12 | + | 111396826 | 111396833 | 2.91e-05 | 0.266 | acagatgc |
ACAGATGM | DREME-6 | chr1 | + | 235917317 | 235917324 | 2.91e-05 | 0.266 | acagatgc |
ACAGATGM | DREME-6 | chr3 | - | 14423698 | 14423705 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr16 | - | 21509383 | 21509390 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr16 | - | 29602568 | 29602575 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr22 | - | 39146667 | 39146674 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr17 | - | 39664423 | 39664430 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr13 | - | 50082662 | 50082669 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr11 | - | 64847501 | 64847508 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr11 | - | 64847648 | 64847655 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr15 | - | 66786320 | 66786327 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr7 | - | 73646054 | 73646061 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr16 | - | 85445937 | 85445944 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr16 | - | 87858404 | 87858411 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr1 | - | 113389878 | 113389885 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr10 | - | 132336771 | 132336778 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr1 | - | 226950702 | 226950709 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr19 | + | 3720106 | 3720113 | 5.81e-05 | 0.337 | acagatgt |
ACAGATGM | DREME-6 | chr8 | + | 17802374 | 17802381 | 5.81e-05 | 0.337 | acagatgt |
ACAGATGM | DREME-6 | chr16 | + | 23317008 | 23317015 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr1 | + | 23514340 | 23514347 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr19 | + | 30605071 | 30605078 | 5.81e-05 | 0.337 | acagatgg |
ACAGATGM | DREME-6 | chr1 | + | 30886872 | 30886879 | 5.81e-05 | 0.337 | acagatgg |
ACAGATGM | DREME-6 | chr22 | + | 37106139 | 37106146 | 5.81e-05 | 0.337 | acagatgg |
ACAGATGM | DREME-6 | chr5 | + | 38193221 | 38193228 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr1 | + | 38724875 | 38724882 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr22 | + | 39247136 | 39247143 | 5.81e-05 | 0.337 | acagatgg |
ACAGATGM | DREME-6 | chr19 | + | 41234934 | 41234941 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr22 | + | 42297008 | 42297015 | 5.81e-05 | 0.337 | acagatgt |
ACAGATGM | DREME-6 | chr19 | + | 43480738 | 43480745 | 5.81e-05 | 0.337 | acagatgt |
ACAGATGM | DREME-6 | chr19 | + | 48290816 | 48290823 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr19 | + | 53881597 | 53881604 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr19 | + | 55391796 | 55391803 | 5.81e-05 | 0.337 | ACAGATGT |
ACAGATGM | DREME-6 | chr14 | + | 74218097 | 74218104 | 5.81e-05 | 0.337 | acagatgt |
ACAGATGM | DREME-6 | chr17 | + | 77468572 | 77468579 | 5.81e-05 | 0.337 | acagatgt |
ACAGATGM | DREME-6 | chr11 | + | 82901003 | 82901010 | 5.81e-05 | 0.337 | acagatgt |
ACAGATGM | DREME-6 | chr10 | + | 88992036 | 88992043 | 5.81e-05 | 0.337 | acagatgg |
ACAGATGM | DREME-6 | chr14 | + | 100695234 | 100695241 | 5.81e-05 | 0.337 | ACAGATGG |
ACAGATGM | DREME-6 | chr9 | + | 130936168 | 130936175 | 5.81e-05 | 0.337 | acagatgg |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_19 --bgfile /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif ACAGATGM /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_19 | MEME file name = /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF768.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.