# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:24 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018)
#        host: indra
#        when: Mon Jun 11 07:45:12 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.212 C 0.285 G 0.286 T 0.217


MOTIF TTCCCR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TTCCCR     YGGGAA        224         63   8.3e-029   2.6e-024
#           TTCCCA     TGGGAA        180         47   8.8e-024   2.8e-019
#           TTCCCG     CGGGAA         57         16   3.6e-007   1.2e-002

letter-probability matrix: alength= 4 w= 6 nsites= 319 E= 2.6e-024
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.799373 0.000000 0.200627 0.000000


MOTIF CCCANAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCCANAA    TTNTGGG        107         26   1.7e-014   5.3e-010
#          CCCACAA    TTGTGGG         42         10   2.9e-006   9.1e-002
#          CCCAGAA    TTCTGGG         41         12   2.8e-005   8.8e-001
#          CCCATAA    TTATGGG         19          2   9.8e-005   3.1e+000
#          CCCAAAA    TTTTGGG         15          2   1.1e-003   3.4e+001

letter-probability matrix: alength= 4 w= 7 nsites= 145 E= 5.3e-010
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.103448 0.386207 0.379310 0.131034
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGGGW DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CTGGGW     WCCCAG        165         80   6.6e-010   2.0e-005
#           CTGGGA     TCCCAG        113         52   1.9e-007   5.9e-003
#           CTGGGT     ACCCAG         62         34   1.9e-003   5.9e+001

letter-probability matrix: alength= 4 w= 6 nsites= 224 E= 2.0e-005
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.691964 0.000000 0.000000 0.308036


MOTIF AAMTACA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AAMTACA    TGTAKTT         27          1   8.2e-008   2.5e-003
#          AACTACA    TGTAGTT         16          0   1.4e-005   4.2e-001
#          AAATACA    TGTATTT         11          1   3.1e-003   9.3e+001

letter-probability matrix: alength= 4 w= 7 nsites= 27 E= 2.5e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.407407 0.592593 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.74 seconds