Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
TGGGARTTGTAGTYC | 15 | TGGGAGTTGTAGTCC |
GCRGDGCMTKCTGGGA | 16 | GCGGGGCATGCTGGGA |
GGGAVTTGTAGT | 12 | GGGAGTTGTAGT |
GCTGCTTCGCCACGAAGGAGTTCCCGTGCYGTGGGAGCRAGTCCRGGACC | 50 | GCTGCTTCGCCACGAAGGAGTTCCCGTGCCGTGGGAGCGAGTCCGGGACC |
AAARANAAAANHWADW | 16 | AAAAACAAAACTAAGT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | 31 | TCAGTGGAGTCGCGGGCACTTTGGCTCAGGC |
TYCNACCTCCTTCCCA | 16 | TCCCACCTCCTTCCCA |
AASATGGCGGCS | 12 | AAGATGGCGGCC |
CMTWTTTCYTWCAAWSTMTMTT | 22 | CCTTTTTCTTTCAATGTATCTT |
KTYTSCCMGCSGCRCCMCRGGTSCKCSCRSCYGCRGAGAM | 40 | TTTTCCCAGCCGCACCCCGGGTGCTCCCAGCCGCGGAGAA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.195 C 0.305 G 0.305 T 0.195
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44094283 | 44094313 | 2.92e-16 | 1.64e-10 | TCAGTGGAGTCGCGGTCAGTTTGGCTCCGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 43984106 | 43984136 | 8.93e-16 | 2.52e-10 | TCTGTGGAGTCGTGGGAACTTTGGCTCAGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44113268 | 44113298 | 1.5e-14 | 2.81e-09 | TCAGTGGAGTCTCGGTCAATTTGACTCCGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44141551 | 44141581 | 1.1e-13 | 1.56e-08 | TCAGTGGAGTCGCGGGCACTTCCGCTCCAGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44002860 | 44002890 | 1.13e-12 | 1.28e-07 | TTCATGGAATGGCGGACCCTTTGGCTCAAGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44113197 | 44113227 | 6.17e-12 | 5.8e-07 | TCAGTGGAGTAGCGGTCAGCTTGGCTCCGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 43951162 | 43951192 | 1.36e-11 | 1.09e-06 | TCGGTGGGGTTGCGGGCACTTCCGGTCAGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44051933 | 44051963 | 3.44e-11 | 2.26e-06 | TCTGCGGAGTCCCGGGCCCTTTGGCTCAGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | - | 43983902 | 43983932 | 3.61e-11 | 2.26e-06 | TCTGTGGAGGCGTGAGAATTTTGGCTCAGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44072043 | 44072073 | 7.32e-11 | 4.13e-06 | TCTGTTGAATGACGAGCAAGTAGGCTCAGGA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44141480 | 44141510 | 9.02e-11 | 4.63e-06 | TCAGTGGAGTCGTGGTCCATTTGACCCACGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44094355 | 44094385 | 1.8e-10 | 8.46e-06 | TCGGTGGAGTCGCGGACACTTCCGCTCGGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44051863 | 44051893 | 2.37e-10 | 1.03e-05 | CTCGTGGAACACTGGGTATTTTGGCTCTGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44094211 | 44094241 | 2.56e-10 | 1.03e-05 | TCAGTGGAATCGCGGTCGGTTTAGCTCCGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr6 | - | 2765310 | 2765340 | 1.12e-09 | 4.22e-05 | TAAGTGTAGTCCGTGGCCGTTTGCCCCAATC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44002790 | 44002820 | 2.75e-08 | 0.00097 | CACTCTGAGTCGCGGGCAAGTTGGCTCAGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44113340 | 44113370 | 1.28e-07 | 0.00424 | TCGGGGTCGTCGCGGTCAGTTTGTCTCAGGA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44002930 | 44002960 | 1.37e-07 | 0.00428 | TCTGTGGAGACGCGAGCACTTCCGGTGTGTG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 43951233 | 43951263 | 1.6e-07 | 0.00475 | TCTGTGGAGTCGCGGGAGCTACGGCTGCGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44113442 | 44113472 | 1.63e-06 | 0.0459 | GCAGTTTTGTCCCTGGTAGTTTGGGTCAGTT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 43984036 | 43984066 | 2.44e-06 | 0.0655 | GCTTGGGAGGCGTGGGAATTTTGGCCCAGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr10 | - | 102132851 | 102132881 | 3.29e-06 | 0.0843 | TCCCTTTAAGTGGGGACCGTTTGGCACTAGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr8 | - | 123041815 | 123041845 | 4.21e-06 | 0.103 | GCGGTTTAGGGCGGGGTCCTTTGGGCCCGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44051772 | 44051802 | 4.92e-06 | 0.116 | CTTGCGGGATTCCTGATACTTCAGCTCAGGT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | - | 43935439 | 43935469 | 5.27e-06 | 0.119 | TCAGTGGGTTCGGTGGTACTTCGACTATTTG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 6199833 | 6199863 | 9.49e-06 | 0.206 | TTTATTTATCTTTGGGCTCGTCCAGTCTGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr6 | - | 11093622 | 11093652 | 1.09e-05 | 0.227 | TGCCTTTGGTCTTGCTCAAGTCGCCTCAGTC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr20 | + | 2509084 | 2509114 | 1.24e-05 | 0.249 | CGAGTGAAGTCTCTGTCCCCTTGGCCCATTC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44207469 | 44207499 | 1.33e-05 | 0.252 | CCCGCGTAGCCTGGGGCACTTCCGCTTTTGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44113396 | 44113426 | 1.39e-05 | 0.252 | TCAGTGGAGTAGCGGGCCACTTCCGCTCCGT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | - | 36139780 | 36139810 | 1.41e-05 | 0.252 | CGAGTGTCGTAGTGTGAATTTTCACCCTAGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr6 | - | 2765368 | 2765398 | 1.43e-05 | 0.252 | GAAGTGTAGTTCGTGGCCGTTTGCCCCGGCG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | - | 36573162 | 36573192 | 1.55e-05 | 0.264 | CACGTGGAGCCGGGAGCCTGAGGCCTCTGTA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 49085918 | 49085948 | 1.63e-05 | 0.27 | TTTGCGGGGTCCAGGTCTGTTACCCACAAGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 43983989 | 43984019 | 1.72e-05 | 0.277 | CCGGTCGATGCGCAGGAAATTTGGCTCCCGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr7 | - | 94004553 | 94004583 | 1.82e-05 | 0.286 | CGAGCGGAACAGCGGGAACGTTGGATCAGAG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | + | 244452426 | 244452456 | 1.92e-05 | 0.293 | TAAGTGTAGAATTGGAAATTAAAAGTCCGGA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 16496257 | 16496287 | 1.99e-05 | 0.295 | TCGCTGCGGCGCGGGGCACGTTGGGCCCGCC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr22 | + | 36529614 | 36529644 | 2.35e-05 | 0.34 | cctttatagttgtggaaactgaggctcagaa |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr5 | + | 173616813 | 173616843 | 2.44e-05 | 0.344 | GCGGGGTAATATGGGAACTGTAGGCGCAGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 37218186 | 37218216 | 2.53e-05 | 0.348 | TCATTTGCCTGCTGGACCCTCCGCCTCAAGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | + | 202348804 | 202348834 | 2.88e-05 | 0.379 | GTAATTTAGTGTTGGTAGTTTTGGCAGCAGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr6 | - | 2765248 | 2765278 | 2.92e-05 | 0.379 | GAAGTGTAGTCCGCGGCCATTCGCCCCAGCT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 38899926 | 38899956 | 2.96e-05 | 0.379 | CAGGGGGCGTGGTGGGGAATTTCCCGCAGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr17 | + | 28952425 | 28952455 | 3.2e-05 | 0.401 | TCTGATGGATTGTGGGAACTGTAGTTCCATG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr12 | + | 75511770 | 75511800 | 3.49e-05 | 0.428 | CCAATGAAGAGCCGGAGACTTTCTCCCAGTA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr17 | + | 7215015 | 7215045 | 4.05e-05 | 0.462 | TTTGGGGAAGCAGGAGCCATGTGCCCCCTGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr11 | + | 36594424 | 36594454 | 4.07e-05 | 0.462 | TTCTGGGAATTGTAGTCCTTTTCCGTAAAGA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr17 | - | 80544899 | 80544929 | 4.07e-05 | 0.462 | CTTATTGGGTCATGGGAGCTTTGCCCTCTGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 5308688 | 5308718 | 4.2e-05 | 0.462 | CCTTGGGGGTAGGGGAACTGTGGGCTCCAGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44164912 | 44164942 | 4.26e-05 | 0.462 | TCCGTGTAGTCGCGCATAGCTCAGCTGCAGT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 43951200 | 43951230 | 4.31e-05 | 0.462 | TCCGGGGAATTCTGGGAAATGTAGTCCAGAC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | - | 44356547 | 44356577 | 4.34e-05 | 0.462 | TTCGTTTTGTTGGGGTCCAGTAGCAACCGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | - | 53520896 | 53520926 | 4.43e-05 | 0.462 | CAAATGGAGCCGTGACCCAGAGGCCTCTGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr16 | - | 23596262 | 23596292 | 4.61e-05 | 0.465 | GCCATGGCGTCTCGTGTCCTTTCAGCCTATG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 43984176 | 43984206 | 4.62e-05 | 0.465 | CCTGTGGCATCATCGACACTTCCGGTCTCCG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 5790538 | 5790568 | 4.72e-05 | 0.467 | TGCGCGAAACTATTATCAGGTTCAGTCAAGA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44207384 | 44207414 | 4.86e-05 | 0.473 | TCAGGTTACTCGGAAGTATTTCCGCTCCAAG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44165068 | 44165098 | 5.12e-05 | 0.489 | TCCTGATACTCGCAGGCACTTCCGCCCAGGA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 1375392 | 1375422 | 5.25e-05 | 0.491 | ATTGTGGGAAATGTAGTTTTTTGCCTCCGTA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr16 | + | 30698018 | 30698048 | 5.39e-05 | 0.491 | TCCGAGGAAGGGCGAGCGCGCAGCCTCTGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr15 | + | 77420488 | 77420518 | 5.45e-05 | 0.491 | CCAGGGGAGTCTGGGCCCATTTGGGCGTCGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr2 | + | 69644091 | 69644121 | 5.49e-05 | 0.491 | TTTGTGGGGTGGCGCGTATGTGGGGACTCGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr3 | - | 15065510 | 15065540 | 5.72e-05 | 0.504 | TTATTGCAATGTCTGACTTTTAGCCTATGTA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 27234374 | 27234404 | 5.97e-05 | 0.517 | CCAGTGGGCGGGCGGGAAAGCTGGGCTAAGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44141518 | 44141548 | 6.06e-05 | 0.518 | TCCGGGGAATTCTGGGAAATGTAGTCCCGCC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr14 | - | 20343580 | 20343610 | 6.22e-05 | 0.523 | TCCAAGGAATCGCGGGCCCAGTGTCACTAGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | - | 50333415 | 50333445 | 6.57e-05 | 0.545 | TCTAAGGGGCGGGGATACCGTTCCCTCGGAC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 45500331 | 45500361 | 6.78e-05 | 0.546 | CTGCTTCAGCTCTGCGACTTTCGGCTCCATA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44164961 | 44164991 | 6.82e-05 | 0.546 | CCTGCGGAATCCTGGGAACTGTAGGTCCAAT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 49085877 | 49085907 | 6.88e-05 | 0.546 | TCTATGTTGTCCTGGACCCTTACCCATAATT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr15 | + | 77420570 | 77420600 | 7.08e-05 | 0.555 | AATATGTAGTCATGACCAATTTCAGTTCTTC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44259872 | 44259902 | 7.28e-05 | 0.562 | CCGTTGCAACCTTGTGTACTTCCGCTGCAGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | + | 156767100 | 156767130 | 7.5e-05 | 0.565 | TCACTTTGCCTTTAAGCAATTTTCCTCAATC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr17 | - | 7687438 | 7687468 | 7.52e-05 | 0.565 | TCCAGGGAGCAGGTAGCTGCTGGGCTCCGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 1375309 | 1375339 | 7.76e-05 | 0.573 | TAACCGGAAACCGTCGCCTTTCGGGCCCGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 44164995 | 44165025 | 7.95e-05 | 0.573 | TCTAGGTAGTTGTAGGCACTTCCGGCTCGAG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr10 | + | 124801802 | 124801832 | 8.08e-05 | 0.573 | ATGATGGGGTAGCTGGAGATTTCCATCATGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 45340362 | 45340392 | 8.19e-05 | 0.573 | CTTGAGGAGCCTCTAGAACTATGAGCCCGAG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr9 | + | 113410629 | 113410659 | 8.21e-05 | 0.573 | TCAATGGAGCTTCCGTCCGTTTCCCATGGTG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr7 | - | 107168710 | 107168740 | 8.4e-05 | 0.573 | CGAAATGGATTGTGGGTTCGTAGTCTCAAGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr17 | - | 45061252 | 45061282 | 8.51e-05 | 0.573 | CCTATTGGACAAGGGGAATTTGCGCTGCATT |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr16 | + | 29996260 | 29996290 | 8.61e-05 | 0.573 | TGCTTGGGGTAGCGGGAGGGCAGACTCTGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 234676219 | 234676249 | 8.61e-05 | 0.573 | AAGGTTGGATGGGTAGTATTCAGACTCCCTC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | + | 54053580 | 54053610 | 8.64e-05 | 0.573 | TCTGGGGAATGTGGTTCGCTGTGGCCCAGAG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr11 | - | 134253291 | 134253321 | 9.06e-05 | 0.594 | GCAGTCGAGTCTGCAGAGTGTTGGGTCTGTA |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr9 | - | 132080075 | 132080105 | 9.18e-05 | 0.595 | TTTGGGGAAATGCGGGAACTTTCTGTATTTC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr2 | + | 74529844 | 74529874 | 9.45e-05 | 0.596 | TTCGTGGGGCAGGGAGGAGTCGGCCTCCCGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr5 | + | 40755995 | 40756025 | 9.48e-05 | 0.596 | CTTCTGGGATTTGTAGTAGTCAGGGCCACGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr17 | + | 4731478 | 4731508 | 9.52e-05 | 0.596 | CCAGAGTGATAATGGCTACCTACAGCCTGGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr5 | + | 139439386 | 139439416 | 9.65e-05 | 0.598 | TCAGGCGGGGACCTAGTACCTTCCGTCCAGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 146052152 | 146052182 | 9.8e-05 | 0.6 | TCCATTGCACTCCGGATCTGCTGACCCCTGC |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr19 | + | 36838694 | 36838724 | 9.93e-05 | 0.6 | TGGAAGTAACCTTGGTCCCGACGGCCCTGGG |
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC | MEME-6 | chr1 | - | 169894093 | 169894123 | 9.99e-05 | 0.6 | TTCGTGGACTAACTAGACCACTGGGGCAGTG |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_9 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_9 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.