Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
TGGGARTTGTAGTYC 15 TGGGAGTTGTAGTCC
GCRGDGCMTKCTGGGA 16 GCGGGGCATGCTGGGA
GGGAVTTGTAGT 12 GGGAGTTGTAGT
GCTGCTTCGCCACGAAGGAGTTCCCGTGCYGTGGGAGCRAGTCCRGGACC 50 GCTGCTTCGCCACGAAGGAGTTCCCGTGCCGTGGGAGCGAGTCCGGGACC
AAARANAAAANHWADW 16 AAAAACAAAACTAAGT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC 31 TCAGTGGAGTCGCGGGCACTTTGGCTCAGGC
TYCNACCTCCTTCCCA 16 TCCCACCTCCTTCCCA
AASATGGCGGCS 12 AAGATGGCGGCC
CMTWTTTCYTWCAAWSTMTMTT 22 CCTTTTTCTTTCAATGTATCTT
KTYTSCCMGCSGCRCCMCRGGTSCKCSCRSCYGCRGAGAM 40 TTTTCCCAGCCGCACCCCGGGTGCTCCCAGCCGCGGAGAA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.195 C 0.305 G 0.305 T 0.195


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44094283 44094313 2.92e-16 1.64e-10 TCAGTGGAGTCGCGGTCAGTTTGGCTCCGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 43984106 43984136 8.93e-16 2.52e-10 TCTGTGGAGTCGTGGGAACTTTGGCTCAGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44113268 44113298 1.5e-14 2.81e-09 TCAGTGGAGTCTCGGTCAATTTGACTCCGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44141551 44141581 1.1e-13 1.56e-08 TCAGTGGAGTCGCGGGCACTTCCGCTCCAGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44002860 44002890 1.13e-12 1.28e-07 TTCATGGAATGGCGGACCCTTTGGCTCAAGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44113197 44113227 6.17e-12 5.8e-07 TCAGTGGAGTAGCGGTCAGCTTGGCTCCGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 43951162 43951192 1.36e-11 1.09e-06 TCGGTGGGGTTGCGGGCACTTCCGGTCAGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44051933 44051963 3.44e-11 2.26e-06 TCTGCGGAGTCCCGGGCCCTTTGGCTCAGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 - 43983902 43983932 3.61e-11 2.26e-06 TCTGTGGAGGCGTGAGAATTTTGGCTCAGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44072043 44072073 7.32e-11 4.13e-06 TCTGTTGAATGACGAGCAAGTAGGCTCAGGA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44141480 44141510 9.02e-11 4.63e-06 TCAGTGGAGTCGTGGTCCATTTGACCCACGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44094355 44094385 1.8e-10 8.46e-06 TCGGTGGAGTCGCGGACACTTCCGCTCGGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44051863 44051893 2.37e-10 1.03e-05 CTCGTGGAACACTGGGTATTTTGGCTCTGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44094211 44094241 2.56e-10 1.03e-05 TCAGTGGAATCGCGGTCGGTTTAGCTCCGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr6 - 2765310 2765340 1.12e-09 4.22e-05 TAAGTGTAGTCCGTGGCCGTTTGCCCCAATC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44002790 44002820 2.75e-08 0.00097 CACTCTGAGTCGCGGGCAAGTTGGCTCAGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44113340 44113370 1.28e-07 0.00424 TCGGGGTCGTCGCGGTCAGTTTGTCTCAGGA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44002930 44002960 1.37e-07 0.00428 TCTGTGGAGACGCGAGCACTTCCGGTGTGTG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 43951233 43951263 1.6e-07 0.00475 TCTGTGGAGTCGCGGGAGCTACGGCTGCGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44113442 44113472 1.63e-06 0.0459 GCAGTTTTGTCCCTGGTAGTTTGGGTCAGTT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 43984036 43984066 2.44e-06 0.0655 GCTTGGGAGGCGTGGGAATTTTGGCCCAGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr10 - 102132851 102132881 3.29e-06 0.0843 TCCCTTTAAGTGGGGACCGTTTGGCACTAGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr8 - 123041815 123041845 4.21e-06 0.103 GCGGTTTAGGGCGGGGTCCTTTGGGCCCGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44051772 44051802 4.92e-06 0.116 CTTGCGGGATTCCTGATACTTCAGCTCAGGT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 - 43935439 43935469 5.27e-06 0.119 TCAGTGGGTTCGGTGGTACTTCGACTATTTG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 6199833 6199863 9.49e-06 0.206 TTTATTTATCTTTGGGCTCGTCCAGTCTGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr6 - 11093622 11093652 1.09e-05 0.227 TGCCTTTGGTCTTGCTCAAGTCGCCTCAGTC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr20 + 2509084 2509114 1.24e-05 0.249 CGAGTGAAGTCTCTGTCCCCTTGGCCCATTC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44207469 44207499 1.33e-05 0.252 CCCGCGTAGCCTGGGGCACTTCCGCTTTTGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44113396 44113426 1.39e-05 0.252 TCAGTGGAGTAGCGGGCCACTTCCGCTCCGT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 - 36139780 36139810 1.41e-05 0.252 CGAGTGTCGTAGTGTGAATTTTCACCCTAGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr6 - 2765368 2765398 1.43e-05 0.252 GAAGTGTAGTTCGTGGCCGTTTGCCCCGGCG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 - 36573162 36573192 1.55e-05 0.264 CACGTGGAGCCGGGAGCCTGAGGCCTCTGTA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 49085918 49085948 1.63e-05 0.27 TTTGCGGGGTCCAGGTCTGTTACCCACAAGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 43983989 43984019 1.72e-05 0.277 CCGGTCGATGCGCAGGAAATTTGGCTCCCGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr7 - 94004553 94004583 1.82e-05 0.286 CGAGCGGAACAGCGGGAACGTTGGATCAGAG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 + 244452426 244452456 1.92e-05 0.293 TAAGTGTAGAATTGGAAATTAAAAGTCCGGA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 16496257 16496287 1.99e-05 0.295 TCGCTGCGGCGCGGGGCACGTTGGGCCCGCC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr22 + 36529614 36529644 2.35e-05 0.34 cctttatagttgtggaaactgaggctcagaa
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr5 + 173616813 173616843 2.44e-05 0.344 GCGGGGTAATATGGGAACTGTAGGCGCAGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 37218186 37218216 2.53e-05 0.348 TCATTTGCCTGCTGGACCCTCCGCCTCAAGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 + 202348804 202348834 2.88e-05 0.379 GTAATTTAGTGTTGGTAGTTTTGGCAGCAGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr6 - 2765248 2765278 2.92e-05 0.379 GAAGTGTAGTCCGCGGCCATTCGCCCCAGCT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 38899926 38899956 2.96e-05 0.379 CAGGGGGCGTGGTGGGGAATTTCCCGCAGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr17 + 28952425 28952455 3.2e-05 0.401 TCTGATGGATTGTGGGAACTGTAGTTCCATG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr12 + 75511770 75511800 3.49e-05 0.428 CCAATGAAGAGCCGGAGACTTTCTCCCAGTA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr17 + 7215015 7215045 4.05e-05 0.462 TTTGGGGAAGCAGGAGCCATGTGCCCCCTGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr11 + 36594424 36594454 4.07e-05 0.462 TTCTGGGAATTGTAGTCCTTTTCCGTAAAGA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr17 - 80544899 80544929 4.07e-05 0.462 CTTATTGGGTCATGGGAGCTTTGCCCTCTGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 5308688 5308718 4.2e-05 0.462 CCTTGGGGGTAGGGGAACTGTGGGCTCCAGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44164912 44164942 4.26e-05 0.462 TCCGTGTAGTCGCGCATAGCTCAGCTGCAGT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 43951200 43951230 4.31e-05 0.462 TCCGGGGAATTCTGGGAAATGTAGTCCAGAC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 - 44356547 44356577 4.34e-05 0.462 TTCGTTTTGTTGGGGTCCAGTAGCAACCGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 - 53520896 53520926 4.43e-05 0.462 CAAATGGAGCCGTGACCCAGAGGCCTCTGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr16 - 23596262 23596292 4.61e-05 0.465 GCCATGGCGTCTCGTGTCCTTTCAGCCTATG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 43984176 43984206 4.62e-05 0.465 CCTGTGGCATCATCGACACTTCCGGTCTCCG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 5790538 5790568 4.72e-05 0.467 TGCGCGAAACTATTATCAGGTTCAGTCAAGA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44207384 44207414 4.86e-05 0.473 TCAGGTTACTCGGAAGTATTTCCGCTCCAAG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44165068 44165098 5.12e-05 0.489 TCCTGATACTCGCAGGCACTTCCGCCCAGGA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 1375392 1375422 5.25e-05 0.491 ATTGTGGGAAATGTAGTTTTTTGCCTCCGTA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr16 + 30698018 30698048 5.39e-05 0.491 TCCGAGGAAGGGCGAGCGCGCAGCCTCTGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr15 + 77420488 77420518 5.45e-05 0.491 CCAGGGGAGTCTGGGCCCATTTGGGCGTCGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr2 + 69644091 69644121 5.49e-05 0.491 TTTGTGGGGTGGCGCGTATGTGGGGACTCGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr3 - 15065510 15065540 5.72e-05 0.504 TTATTGCAATGTCTGACTTTTAGCCTATGTA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 27234374 27234404 5.97e-05 0.517 CCAGTGGGCGGGCGGGAAAGCTGGGCTAAGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44141518 44141548 6.06e-05 0.518 TCCGGGGAATTCTGGGAAATGTAGTCCCGCC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr14 - 20343580 20343610 6.22e-05 0.523 TCCAAGGAATCGCGGGCCCAGTGTCACTAGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 - 50333415 50333445 6.57e-05 0.545 TCTAAGGGGCGGGGATACCGTTCCCTCGGAC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 45500331 45500361 6.78e-05 0.546 CTGCTTCAGCTCTGCGACTTTCGGCTCCATA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44164961 44164991 6.82e-05 0.546 CCTGCGGAATCCTGGGAACTGTAGGTCCAAT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 49085877 49085907 6.88e-05 0.546 TCTATGTTGTCCTGGACCCTTACCCATAATT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr15 + 77420570 77420600 7.08e-05 0.555 AATATGTAGTCATGACCAATTTCAGTTCTTC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44259872 44259902 7.28e-05 0.562 CCGTTGCAACCTTGTGTACTTCCGCTGCAGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 + 156767100 156767130 7.5e-05 0.565 TCACTTTGCCTTTAAGCAATTTTCCTCAATC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr17 - 7687438 7687468 7.52e-05 0.565 TCCAGGGAGCAGGTAGCTGCTGGGCTCCGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 1375309 1375339 7.76e-05 0.573 TAACCGGAAACCGTCGCCTTTCGGGCCCGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 44164995 44165025 7.95e-05 0.573 TCTAGGTAGTTGTAGGCACTTCCGGCTCGAG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr10 + 124801802 124801832 8.08e-05 0.573 ATGATGGGGTAGCTGGAGATTTCCATCATGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 45340362 45340392 8.19e-05 0.573 CTTGAGGAGCCTCTAGAACTATGAGCCCGAG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr9 + 113410629 113410659 8.21e-05 0.573 TCAATGGAGCTTCCGTCCGTTTCCCATGGTG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr7 - 107168710 107168740 8.4e-05 0.573 CGAAATGGATTGTGGGTTCGTAGTCTCAAGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr17 - 45061252 45061282 8.51e-05 0.573 CCTATTGGACAAGGGGAATTTGCGCTGCATT
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr16 + 29996260 29996290 8.61e-05 0.573 TGCTTGGGGTAGCGGGAGGGCAGACTCTGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 234676219 234676249 8.61e-05 0.573 AAGGTTGGATGGGTAGTATTCAGACTCCCTC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 + 54053580 54053610 8.64e-05 0.573 TCTGGGGAATGTGGTTCGCTGTGGCCCAGAG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr11 - 134253291 134253321 9.06e-05 0.594 GCAGTCGAGTCTGCAGAGTGTTGGGTCTGTA
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr9 - 132080075 132080105 9.18e-05 0.595 TTTGGGGAAATGCGGGAACTTTCTGTATTTC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr2 + 74529844 74529874 9.45e-05 0.596 TTCGTGGGGCAGGGAGGAGTCGGCCTCCCGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr5 + 40755995 40756025 9.48e-05 0.596 CTTCTGGGATTTGTAGTAGTCAGGGCCACGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr17 + 4731478 4731508 9.52e-05 0.596 CCAGAGTGATAATGGCTACCTACAGCCTGGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr5 + 139439386 139439416 9.65e-05 0.598 TCAGGCGGGGACCTAGTACCTTCCGTCCAGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 146052152 146052182 9.8e-05 0.6 TCCATTGCACTCCGGATCTGCTGACCCCTGC
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr19 + 36838694 36838724 9.93e-05 0.6 TGGAAGTAACCTTGGTCCCGACGGCCCTGGG
TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC MEME-6 chr1 - 169894093 169894123 9.99e-05 0.6 TTCGTGGACTAACTAGACCACTGGGGCAGTG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_9 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif TCHGTGGARTCGCGGGCAVTTTGGCTCMRGC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_9 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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