# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF76.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:26 PDT 2018) # host: indra # when: Mon Jun 11 07:39:43 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.192 C 0.303 G 0.315 T 0.191 MOTIF RACTACR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST RACTACR YGTAGTY 290 6 1.7e-097 5.2e-093 # GACTACA TGTAGTC 147 2 7.4e-046 2.3e-041 # AACTACA TGTAGTT 123 3 5.0e-036 1.5e-031 # GACTACG CGTAGTC 29 1 2.1e-008 6.4e-004 # AACTACG CGTAGTT 24 0 4.7e-008 1.5e-003 letter-probability matrix: alength= 4 w= 7 nsites= 346 E= 5.2e-093 0.456647 0.000000 0.543353 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.843931 0.000000 0.156069 0.000000 MOTIF MTGGGA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST MTGGGA TCCCAK 351 66 2.6e-071 7.8e-067 # CTGGGA TCCCAG 305 45 2.2e-066 6.6e-062 # ATGGGA TCCCAT 67 22 3.8e-007 1.2e-002 letter-probability matrix: alength= 4 w= 6 nsites= 464 E= 7.8e-067 0.153017 0.846983 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCCCGGCR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCCCGGCR YGCCGGGA 74 7 2.2e-016 6.4e-012 # TCCCGGCA TGCCGGGA 47 2 9.2e-013 2.7e-008 # TCCCGGCG CGCCGGGA 31 5 4.9e-006 1.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 6.4e-012 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.609756 0.000000 0.390244 0.000000 MOTIF CGCRGWG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CGCRGWG CWCYGCG 152 53 1.0e-014 3.0e-010 # CGCGGTG CACCGCG 48 15 1.2e-005 3.4e-001 # CGCAGAG CTCTGCG 40 11 2.0e-005 5.8e-001 # CGCAGTG CACTGCG 32 11 7.9e-004 2.3e+001 # CGCGGAG CTCCGCG 44 19 8.4e-004 2.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 166 E= 3.0e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.451807 0.000000 0.548193 0.000000 0.000000 0.000000 1.000000 0.000000 0.518072 0.000000 0.000000 0.481928 0.000000 0.000000 1.000000 0.000000 MOTIF TCCCACAR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TCCCACAR YTGTGGGA 47 3 8.1e-012 2.3e-007 # TCCCACAA TTGTGGGA 29 3 9.7e-007 2.8e-002 # TCCCACAG CTGTGGGA 18 0 3.4e-006 9.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 2.3e-007 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.640000 0.000000 0.360000 0.000000 MOTIF CGCGGSG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CGCGGSG CSCCGCG 113 46 6.3e-009 1.8e-004 # CGCGGCG CGCCGCG 57 20 8.0e-006 2.3e-001 # CGCGGGG CCCCGCG 69 28 8.9e-006 2.5e-001 letter-probability matrix: alength= 4 w= 7 nsites= 127 E= 1.8e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.448819 0.551181 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF SGGAAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST SGGAAA TTTCCS 106 48 3.4e-007 9.6e-003 # GGGAAA TTTCCC 66 26 8.9e-006 2.5e-001 # CGGAAA TTTCCG 47 24 3.4e-003 9.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 121 E= 9.6e-003 0.000000 0.429752 0.570248 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAKGCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AAKGCA TGCMTT 93 40 6.6e-007 1.9e-002 # AATGCA TGCATT 43 17 4.0e-004 1.1e+001 # AAGGCA TGCCTT 51 23 5.3e-004 1.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 97 E= 1.9e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.536082 0.463918 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 35.59 seconds