# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF747.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF747.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF747.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF747.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:47:30 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF747.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:47:33 PST 2017) # host: wotan # when: Mon Dec 18 17:12:48 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.240 C 0.247 G 0.264 T 0.249 MOTIF GRTARTGA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GRTARTGA TCAYTAYC 54 8 3.4e-010 9.2e-006 # GATAGTGA TCACTATC 24 1 6.2e-007 1.7e-002 # GATAATGA TCATTATC 19 3 3.9e-004 1.0e+001 # GGTAATGA TCATTACC 14 2 2.0e-003 5.3e+001 # GGTAGTGA TCACTACC 13 2 3.5e-003 9.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 9.2e-006 0.000000 0.000000 1.000000 0.000000 0.559524 0.000000 0.440476 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.488095 0.000000 0.511905 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AMCACCAT DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AMCACCAT ATGGTGKT 63 18 1.1e-007 2.8e-003 # ACCACCAT ATGGTGGT 56 17 1.3e-006 3.6e-002 # AACACCAT ATGGTGTT 11 1 3.1e-003 8.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 117 E= 2.8e-003 1.000000 0.000000 0.000000 0.000000 0.119658 0.880342 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF TAGRTGGA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TAGRTGGA TCCAYCTA 32 3 1.5e-007 3.9e-003 # TAGATGGA TCCATCTA 24 2 4.3e-006 1.2e-001 # TAGGTGGA TCCACCTA 11 1 3.1e-003 8.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.9e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.733333 0.000000 0.266667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTCTCRAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GTCTCRAA TTYGAGAC 25 1 3.2e-007 8.5e-003 # GTCTCAAA TTTGAGAC 15 0 2.8e-005 7.5e-001 # GTCTCGAA TTCGAGAC 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 8.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACWMAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACWMAAA TTTKWGT 79 27 6.3e-008 1.7e-003 # ACAAAAA TTTTTGT 33 7 1.6e-005 4.2e-001 # ACTAAAA TTTTAGT 16 3 2.1e-003 5.5e+001 # ACTCAAA TTTGAGT 10 1 5.7e-003 1.5e+002 # ACACAAA TTTGTGT 33 16 9.4e-003 2.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 98 E= 1.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.734694 0.000000 0.000000 0.265306 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGGAYTA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGGAYTA TARTCCC 31 3 2.8e-007 7.3e-003 # GGGATTA TAATCCC 22 3 6.8e-005 1.8e+000 # GGGACTA TAGTCCC 9 0 1.9e-003 5.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 31 E= 7.3e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.290323 0.000000 0.709677 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGCCTCCY DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGCCTCCY RGGAGGCT 19 0 1.7e-006 4.4e-002 # AGCCTCCC GGGAGGCT 12 0 2.3e-004 6.1e+000 # AGCCTCCT AGGAGGCT 7 0 7.7e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.4e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.631579 0.000000 0.368421 # Stopping reason: E-value threshold exceeded # Running time: 100.41 seconds