# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF707.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF707.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF707.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF707.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:12:09 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF707.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:12:09 PDT 2018) # host: kadru # when: Thu May 10 18:53:10 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.268 C 0.225 G 0.227 T 0.279 MOTIF AGTRGGG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGTRGGG CCCYACT 430 26 4.7e-146 1.2e-141 # AGTGGGG CCCCACT 406 18 4.4e-141 1.2e-136 # AGTAGGG CCCTACT 25 8 2.0e-003 5.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 439 E= 1.2e-141 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.056948 0.000000 0.943052 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTACCARD DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GTACCARD HYTGGTAC 339 16 1.0e-107 2.7e-103 # GTACCAGG CCTGGTAC 233 1 5.6e-081 1.4e-076 # GTACCAAT ATTGGTAC 231 4 4.9e-075 1.3e-070 # GTACCAGA TCTGGTAC 52 2 2.8e-014 7.3e-010 # GTACCAGT ACTGGTAC 21 3 1.2e-004 3.1e+000 # GTACCAAA TTTGGTAC 23 4 1.3e-004 3.5e+000 # GTACCAAG CTTGGTAC 21 4 4.0e-004 1.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 345 E= 2.7e-103 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.434783 0.000000 0.565217 0.000000 0.136232 0.000000 0.466667 0.397101 MOTIF CAKTTYCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAKTTYCA TGRAAMTG 241 14 8.5e-067 2.2e-062 # CAGTTCCA TGGAACTG 139 0 1.6e-046 4.2e-042 # CATTTTCA TGAAAATG 140 6 2.9e-038 7.4e-034 # CATTTCCA TGGAAATG 20 4 7.0e-004 1.8e+001 # CAGTTTCA TGAAACTG 15 4 9.1e-003 2.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 327 E= 2.2e-062 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.477064 0.522936 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.495413 0.000000 0.504587 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTAATAYA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CTAATAYA TRTATTAG 174 1 1.7e-057 4.2e-053 # CTAATACA TGTATTAG 151 1 5.9e-049 1.5e-044 # CTAATATA TATATTAG 23 0 9.6e-008 2.4e-003 letter-probability matrix: alength= 4 w= 8 nsites= 175 E= 4.2e-053 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.868571 0.000000 0.131429 1.000000 0.000000 0.000000 0.000000 MOTIF AAAGATAH DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAAGATAH DTATCTTT 188 6 1.9e-055 4.9e-051 # AAAGATAC GTATCTTT 155 3 2.8e-047 7.1e-043 # AAAGATAT ATATCTTT 15 0 2.8e-005 7.1e-001 # AAAGATAA TTATCTTT 18 3 6.8e-004 1.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 189 E= 4.9e-051 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.095238 0.825397 0.000000 0.079365 MOTIF GYTGCTD DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GYTGCTD HAGCARC 247 43 2.9e-046 7.3e-042 # GCTGCTG CAGCAGC 101 5 2.0e-026 5.0e-022 # GTTGCTT AAGCAAC 71 12 2.6e-012 6.4e-008 # GTTGCTG CAGCAAC 63 11 8.1e-011 2.0e-006 # GCTGCTT AAGCAGC 28 6 8.0e-005 2.0e+000 # GCTGCTA TAGCAGC 28 7 2.1e-004 5.3e+000 # GTTGCTA TAGCAAC 23 7 2.3e-003 5.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 320 E= 7.3e-042 0.000000 0.000000 1.000000 0.000000 0.000000 0.503125 0.000000 0.496875 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.162500 0.000000 0.528125 0.309375 MOTIF AAGTSRCT DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AAGTSRCT AGYSACTT 105 3 5.7e-030 1.4e-025 # AAGTCACT AGTGACTT 65 0 4.3e-021 1.1e-016 # AAGTGACT AGTCACTT 64 1 3.2e-019 7.9e-015 # AAGTCGCT AGCGACTT 21 0 4.0e-007 9.8e-003 # AAGTGGCT AGCCACTT 16 2 6.1e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 1.4e-025 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.518868 0.481132 0.000000 0.650943 0.000000 0.349057 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AAAATRTG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AAAATRTG CAYATTTT 133 13 1.7e-029 4.3e-025 # AAAATGTG CACATTTT 110 11 5.8e-024 1.4e-019 # AAAATATG CATATTTT 23 3 3.7e-005 9.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 133 E= 4.3e-025 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.172932 0.000000 0.827068 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCTGWTAC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CCTGWTAC GTAWCAGG 87 2 2.6e-025 6.3e-021 # CCTGTTAC GTAACAGG 76 2 9.1e-022 2.2e-017 # CCTGATAC GTATCAGG 13 0 1.1e-004 2.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 6.3e-021 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.146067 0.000000 0.000000 0.853933 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAATTTWC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CAATTTWC GWAAATTG 88 7 1.6e-020 3.9e-016 # CAATTTAC GTAAATTG 68 5 3.0e-016 7.3e-012 # CAATTTTC GAAAATTG 20 2 5.3e-005 1.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 3.9e-016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.775281 0.000000 0.000000 0.224719 0.000000 1.000000 0.000000 0.000000 MOTIF YACTGCTR DREME-11 # Word RC Word Pos Neg P-value E-value # BEST YACTGCTR YAGCAGTR 65 7 8.0e-014 1.9e-009 # CACTGCTG CAGCAGTG 27 3 3.3e-006 8.1e-002 # CACTGCTA TAGCAGTG 21 1 4.7e-006 1.1e-001 # TACTGCTA TAGCAGTA 14 3 6.1e-003 1.5e+002 # TACTGCTG CAGCAGTA 7 0 7.7e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 1.9e-009 0.000000 0.712329 0.000000 0.287671 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.520548 0.000000 0.479452 0.000000 MOTIF AACCTCTG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AACCTCTG CAGAGGTT 49 2 2.3e-013 5.6e-009 # AACCTCTG CAGAGGTT 49 2 2.3e-013 5.6e-009 letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 5.6e-009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ARAACAGA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ARAACAGA TCTGTTYT 49 5 8.5e-011 2.1e-006 # AGAACAGA TCTGTTCT 23 1 1.2e-006 3.0e-002 # AAAACAGA TCTGTTTT 26 4 2.4e-005 5.9e-001 letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 2.1e-006 1.000000 0.000000 0.000000 0.000000 0.530612 0.000000 0.469388 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATAAAGAC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST ATAAAGAC GTCTTTAT 41 4 2.6e-009 6.3e-005 # ATAAAGAC GTCTTTAT 41 4 2.6e-009 6.3e-005 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 6.3e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TTACTGTR DREME-15 # Word RC Word Pos Neg P-value E-value # BEST TTACTGTR YACAGTAA 27 1 8.2e-008 2.0e-003 # TTACTGTA TACAGTAA 20 1 9.1e-006 2.2e-001 # TTACTGTG CACAGTAA 7 0 7.7e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.0e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.740741 0.000000 0.259259 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 64.62 seconds