# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF704.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF704.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF704.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF704.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 18:11:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF704.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 18:11:25 PDT 2018) # host: wotan # when: Thu May 10 19:58:25 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.211 C 0.295 G 0.291 T 0.204 MOTIF CVGCCGGC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CVGCCGGC GCCGGCBG 114 15 2.7e-022 7.8e-018 # CGGCCGGC GCCGGCCG 82 7 9.9e-019 2.9e-014 # CCGCCGGC GCCGGCGG 33 6 5.3e-006 1.5e-001 # CAGCCGGC GCCGGCTG 23 4 1.3e-004 3.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 7.8e-018 0.000000 1.000000 0.000000 0.000000 0.135593 0.262712 0.601695 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RTCTCAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RTCTCAAA TTTGAGAY 51 1 4.0e-015 1.2e-010 # GTCTCAAA TTTGAGAC 39 1 2.0e-011 5.9e-007 # ATCTCAAA TTTGAGAT 12 0 2.3e-004 6.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.2e-010 0.235294 0.000000 0.764706 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAATAAAT DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAATAAAT ATTTATTT 98 20 4.7e-015 1.4e-010 # AAATAAAT ATTTATTT 98 20 4.7e-015 1.4e-010 letter-probability matrix: alength= 4 w= 8 nsites= 469 E= 1.4e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACAGAGY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACAGAGY RCTCTGT 49 7 1.7e-009 5.0e-005 # ACAGAGC GCTCTGT 31 2 4.6e-008 1.3e-003 # ACAGAGT ACTCTGT 22 5 6.7e-004 1.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 58 E= 5.0e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.603448 0.000000 0.396552 MOTIF CACGTGAC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CACGTGAC GTCACGTG 27 0 5.5e-009 1.6e-004 # CACGTGAC GTCACGTG 27 0 5.5e-009 1.6e-004 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.6e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGSTGA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGSTGA TCASCT 89 35 1.7e-007 4.9e-003 # AGCTGA TCAGCT 53 17 5.4e-006 1.5e-001 # AGGTGA TCACCT 40 20 5.6e-003 1.6e+002 letter-probability matrix: alength= 4 w= 6 nsites= 97 E= 4.9e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.556701 0.443299 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGGMG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATGGMG CKCCAT 83 32 3.3e-007 9.2e-003 # ATGGCG CGCCAT 46 15 2.9e-005 8.2e-001 # ATGGAG CTCCAT 40 17 1.3e-003 3.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 90 E= 9.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.511111 0.488889 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCCGGTK DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GCCGGTK MACCGGC 47 12 1.5e-006 4.2e-002 # GCCGGTG CACCGGC 31 8 1.2e-004 3.3e+000 # GCCGGTT AACCGGC 16 4 5.6e-003 1.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 48 E= 4.2e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 # Stopping reason: E-value threshold exceeded # Running time: 115.23 seconds