# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF697.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF697.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF697.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF697.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:44:43 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF697.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:44:43 PST 2017) # host: kali # when: Mon Dec 18 16:59:19 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.393 C 0.108 G 0.111 T 0.388 MOTIF AATAAATA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AATAAATA TATTTATT 600 155 2.6e-195 5.2e-191 # AATAAATA TATTTATT 600 155 2.6e-195 5.2e-191 letter-probability matrix: alength= 4 w= 8 nsites= 3140 E= 5.2e-191 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWC GWCTC 437 26 2.9e-150 5.8e-146 # GAGAC GTCTC 381 15 1.3e-130 2.6e-126 # GAGTC GACTC 262 11 1.2e-078 2.3e-074 letter-probability matrix: alength= 4 w= 5 nsites= 651 E= 5.8e-146 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.700461 0.000000 0.000000 0.299539 0.000000 1.000000 0.000000 0.000000 MOTIF CAGWG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAGWG CWCTG 276 32 1.6e-064 2.9e-060 # CAGAG CTCTG 240 16 2.3e-064 4.3e-060 # CAGTG CACTG 44 16 1.4e-004 2.5e+000 letter-probability matrix: alength= 4 w= 5 nsites= 301 E= 2.9e-060 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.850498 0.000000 0.000000 0.149502 0.000000 0.000000 1.000000 0.000000 MOTIF CATCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CATCTC GAGATG 128 9 2.9e-031 5.1e-027 # CATCTC GAGATG 128 9 2.9e-031 5.1e-027 letter-probability matrix: alength= 4 w= 6 nsites= 129 E= 5.1e-027 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GRGYGA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GRGYGA TCRCYC 118 11 2.1e-026 3.7e-022 # GGGTGA TCACCC 50 2 1.1e-013 2.0e-009 # GAGTGA TCACTC 31 3 2.8e-007 4.8e-003 # GAGCGA TCGCTC 20 2 5.3e-005 9.2e-001 # GGGCGA TCGCCC 21 4 4.0e-004 7.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 125 E= 3.7e-022 0.000000 0.000000 1.000000 0.000000 0.416000 0.000000 0.584000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.336000 0.000000 0.664000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CADGAGC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CADGAGC GCTCHTG 32 0 1.5e-010 2.6e-006 # CAAGAGC GCTCTTG 16 0 1.4e-005 2.3e-001 # CAGGAGC GCTCCTG 9 0 1.9e-003 3.2e+001 # CATGAGC GCTCATG 7 0 7.7e-003 1.3e+002 letter-probability matrix: alength= 4 w= 7 nsites= 32 E= 2.6e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.281250 0.218750 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CYGGGC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CYGGGC GCCCRG 44 4 3.8e-010 6.4e-006 # CTGGGC GCCCAG 34 4 2.1e-007 3.5e-003 # CCGGGC GCCCGG 10 0 9.4e-004 1.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 45 E= 6.4e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAAGWC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAAGWC GWCTTG 45 6 4.8e-009 7.9e-005 # CAAGAC GTCTTG 35 4 1.1e-007 1.8e-003 # CAAGTC GACTTG 12 2 6.2e-003 1.0e+002 letter-probability matrix: alength= 4 w= 6 nsites= 47 E= 7.9e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.765957 0.000000 0.000000 0.234043 0.000000 1.000000 0.000000 0.000000 MOTIF GHCAC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GHCAC GTGDC 74 28 1.1e-006 1.8e-002 # GACAC GTGTC 27 8 8.1e-004 1.3e+001 # GCCAC GTGGC 28 10 2.2e-003 3.6e+001 # GTCAC GTGAC 26 10 5.1e-003 8.3e+001 letter-probability matrix: alength= 4 w= 5 nsites= 80 E= 1.8e-002 0.000000 0.000000 1.000000 0.000000 0.337500 0.362500 0.000000 0.300000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 37.04 seconds