# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF692.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF692.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF692.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF692.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:43:58 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF692.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:43:58 PST 2017)
#        host: surya
#        when: Mon Dec 18 16:59:21 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.188 C 0.306 G 0.315 T 0.190


MOTIF GGNCCCAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGNCCCAC   GTGGGNCC        342         25   2.2e-099   6.8e-095
#         GGGCCCAC   GTGGGCCC        197          8   2.2e-056   6.7e-052
#         GGCCCCAC   GTGGGGCC        126         10   9.9e-030   3.0e-025
#         GGACCCAC   GTGGGTCC         41          5   1.3e-008   3.9e-004
#         GGTCCCAC   GTGGGACC         33          3   7.8e-008   2.4e-003

letter-probability matrix: alength= 4 w= 8 nsites= 356 E= 6.8e-095
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.098315 0.308989 0.508427 0.084270
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TTTAARR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TTTAARR    YYTTAAA        110         16   1.6e-020   5.0e-016
#          TTTAAGA    TCTTAAA         39          3   1.6e-009   4.9e-005
#          TTTAAGG    CCTTAAA         40          5   2.3e-008   7.1e-004
#          TTTAAAG    CTTTAAA         22          4   2.3e-004   7.1e+000
#          TTTAAAA    TTTTAAA         20          6   4.3e-003   1.3e+002

letter-probability matrix: alength= 4 w= 7 nsites= 118 E= 5.0e-016
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.305085 0.000000 0.694915 0.000000
0.491525 0.000000 0.508475 0.000000


MOTIF GGAAATD DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGAAATD    HATTTCC         47         10   2.1e-007   6.2e-003
#          GGAAATG    CATTTCC         25          7   9.2e-004   2.8e+001
#          GGAAATA    TATTTCC         11          1   3.1e-003   9.2e+001
#          GGAAATT    AATTTCC         12          2   6.2e-003   1.9e+002

letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 6.2e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.220000 0.000000 0.540000 0.240000


# Stopping reason: E-value threshold exceeded
#    Running time: 15.46 seconds